[ { "uniprot_canonical_ac": "F4JHW4-1", "uniprot_ac": "F4JHW4", "uniprot_id": "F4JHW4_ARATH", "mass": { "chemical_mass": 60791.0, "monoisotopic_mass": 60791.0 }, "refseq": {}, "gene_names": [ { "name": "T5J8.20", "type": "synonym", "evidence": [ { "id": "F4JHW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JHW4" } ] }, { "name": "T5J8_20", "type": "synonym", "evidence": [ { "id": "F4JHW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JHW4" } ] } ], "protein_names": [ { "name": "ELKS/Rab6-interacting/CAST family protein", "type": "synonym", "evidence": [ { "id": "F4JHW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JHW4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JHW4", "url": "https://www.uniprot.org/uniprotkb/F4JHW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JHW4", "locus": {} } ], "crossref": [ { "id": "F4JHW4", "url": "https://alphafold.ebi.ac.uk/entry/F4JHW4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G02880", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G02880", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828150", "url": "https://www.ncbi.nlm.nih.gov/gene/828150", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G02880", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G02880", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F4JHW4", "url": "https://www.orthodb.org/?gene=F4JHW4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48459", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48459", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48459:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48459:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT4G02880", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G02880", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JHW4", "url": "https://www.uniprot.org/uniprotkb/F4JHW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JHW4-1", "url": "https://www.uniprot.org/uniprotkb/F4JHW4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGYKAVYRSLTELFPQIDARLLKAVAIEHPKDVNEAAAVVVSEIVPFFYPNLADSSTQPENKTPGNVPTEVENAVERDMPFSVLSGSEMGGSYSGSASMAFEYHETRAPVTESVSKRNQLTHVMPNVVVDIQRKGKIGLSGSDESGVVSSEPPVSCQAGAKSTGDDWQGVEFHSTGNQAEASTSADSEDAVHKLVYPADNLAITQNSHPLQIRFGSIDVVNETSSGSLAVENSDAELSGSNLVDEISKGSLADENGDPELDGAVSSVGNRSTQGCNMVHLEQIIEDAKSNKRTLFTVMESIMNLMREVELQEKEAEKAKEDASIGGFDTLDKVEELKKMLEHAKEANDMAAGEVYGERSILTTEVNELENRLISLSEERDNSLSVLDEMRVDLEIRLATALGIKNAAEQEKQEKEGSARKAFAEQEAIMERVVQESKLLQQEAEENSKLREFLMDHGRIVDSLQGEISVICQDIRHLKEKFDNRVPLSQSISSSQTSCKLASSASSMKSLLTEKPLEASYETPEASSNNKSPKASVNERKELLDDGWDFFDKETEL", "length": 556, "header": "tr|F4JHW4-1|F4JHW4_ARATH Isoform 1 of ELKS/Rab6-interacting/CAST family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JHW4-1" }, "isoforms": [ { "isoform_ac": "F4JHW4-1", "url": "https://www.uniprot.org/uniprotkb/F4JHW4/entry", "sequence": { "sequence": "MGYKAVYRSLTELFPQIDARLLKAVAIEHPKDVNEAAAVVVSEIVPFFYPNLADSSTQPENKTPGNVPTEVENAVERDMPFSVLSGSEMGGSYSGSASMAFEYHETRAPVTESVSKRNQLTHVMPNVVVDIQRKGKIGLSGSDESGVVSSEPPVSCQAGAKSTGDDWQGVEFHSTGNQAEASTSADSEDAVHKLVYPADNLAITQNSHPLQIRFGSIDVVNETSSGSLAVENSDAELSGSNLVDEISKGSLADENGDPELDGAVSSVGNRSTQGCNMVHLEQIIEDAKSNKRTLFTVMESIMNLMREVELQEKEAEKAKEDASIGGFDTLDKVEELKKMLEHAKEANDMAAGEVYGERSILTTEVNELENRLISLSEERDNSLSVLDEMRVDLEIRLATALGIKNAAEQEKQEKEGSARKAFAEQEAIMERVVQESKLLQQEAEENSKLREFLMDHGRIVDSLQGEISVICQDIRHLKEKFDNRVPLSQSISSSQTSCKLASSASSMKSLLTEKPLEASYETPEASSNNKSPKASVNERKELLDDGWDFFDKETEL", "length": 556, "header": "tr|F4JHW4-1|F4JHW4_ARATH Isoform 1 of ELKS/Rab6-interacting/CAST family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JHW4-1" }, "locus": { "chromosome": "4", "start_pos": 1274465, "end_pos": 1278718, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G02880.2", "url": "https://www.ensemblgenomes.org/id/AT4G02880.2" }, { "database": "Ensembl Peptide", "id": "AT4G02880.2", "url": "https://www.ensemblgenomes.org/id/AT4G02880.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JHW4", "url": "https://www.uniprot.org/uniprotkb/F4JHW4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JHW4", "url": "https://www.uniprot.org/uniprotkb/F4JHW4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G02880", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G02880", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4JHW4", "url": "https://www.uniprot.org/uniprotkb/F4JHW4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JHW4", "url": "https://www.uniprot.org/uniprotkb/F4JHW4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F4JHW4", "url": "https://www.uniprot.org/uniprotkb/F4JHW4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F4JHW4", "url": "https://www.uniprot.org/uniprotkb/F4JHW4" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F4JHW4", "url": "https://www.uniprot.org/uniprotkb/F4JHW4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 269, "end_pos": 271, "annotation": "n_glycosylation_sequon" }, { "start_pos": 529, "end_pos": 531, "annotation": "n_glycosylation_sequon" }, { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JHW4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 556, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JHW4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JHW4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 221, "end_pos": 223 }, { "start_pos": 269, "end_pos": 271 }, { "start_pos": 529, "end_pos": 531 }, { "start_pos": 61, "end_pos": 63 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JI00-1", "uniprot_ac": "F4JI00", "uniprot_id": "F4JI00_ARATH", "mass": { "chemical_mass": 13829.0, "monoisotopic_mass": 13829.0 }, "refseq": { "ac": "NP_680551", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680551" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4JI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI00/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_680551", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680551" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JI00", "url": "https://www.uniprot.org/uniprotkb/F4JI00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JI00", "locus": {} } ], "crossref": [ { "id": "F4JI00", "url": "https://alphafold.ebi.ac.uk/entry/F4JI00", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G01245", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G01245", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828185", "url": "https://www.ncbi.nlm.nih.gov/gene/828185", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G01245", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G01245", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR47344", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47344", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47344:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47344:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_680551", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680551", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G01245", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G01245", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JI00", "url": "https://www.uniprot.org/uniprotkb/F4JI00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JI00-1", "url": "https://www.uniprot.org/uniprotkb/F4JI00-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVIHLSSSCYSCRVEYFVRFLVSYNNLLNYAISSYKELLAKCNQLGRGEAQSSEKLEKALEKIEKLKKRMRELELITEENRAIRDINVSKKCSYTEVSLKRPDIVNVTLQQWYFCCTS", "length": 118, "header": "tr|F4JI00-1|F4JI00_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JI00-1" }, "isoforms": [ { "isoform_ac": "F4JI00-1", "url": "https://www.uniprot.org/uniprotkb/F4JI00/entry", "sequence": { "sequence": 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Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, 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"sequence": { "sequence": "MSQQRTRSRNPFKILFTKKNNARLSPKLLSLLNNFETNLTVSIRELVPKDKNDIVSVSWMIQAMQSLCETHKSIRTLVKDLEVPVSDLEENFIYIFSDFSLKRELCNAFTSEIYHLEHGNLLLKFAFSKLETNSGNILQRWNQHMVSKNPSIENWGAVLSRLVESMDHHHHISKKGKKKYSAEGKVLLRVLYGVKVKTLYIFSVFDASFSGSSKNLFYLTIPKEMEELPWVQAFMELQNTINPEIKNTFLSDGFTVIKDLEAVETGVKKLYTAVQEGSVPILLVEPLEKSVIELSERFELVSKETRCLSKMVISARDALLESLWTKCAEELGVTLPTMVKSVNIEEKS", "length": 348, "header": "tr|F4JI15-1|F4JI15_ARATH Isoform 1 of BPS1-like protein OS=Arabidopsis thaliana OX=3702 GN=BPS3 PE=4 SV=1 CANONICAL=F4JI15-1" }, "isoforms": [ { "isoform_ac": "F4JI15-1", "url": "https://www.uniprot.org/uniprotkb/F4JI15/entry", "sequence": { "sequence": "MSQQRTRSRNPFKILFTKKNNARLSPKLLSLLNNFETNLTVSIRELVPKDKNDIVSVSWMIQAMQSLCETHKSIRTLVKDLEVPVSDLEENFIYIFSDFSLKRELCNAFTSEIYHLEHGNLLLKFAFSKLETNSGNILQRWNQHMVSKNPSIENWGAVLSRLVESMDHHHHISKKGKKKYSAEGKVLLRVLYGVKVKTLYIFSVFDASFSGSSKNLFYLTIPKEMEELPWVQAFMELQNTINPEIKNTFLSDGFTVIKDLEAVETGVKKLYTAVQEGSVPILLVEPLEKSVIELSERFELVSKETRCLSKMVISARDALLESLWTKCAEELGVTLPTMVKSVNIEEKS", "length": 348, "header": "tr|F4JI15-1|F4JI15_ARATH Isoform 1 of BPS1-like protein OS=Arabidopsis thaliana OX=3702 GN=BPS3 PE=4 SV=1 CANONICAL=F4JI15-1" }, "locus": { "chromosome": "4", "start_pos": 564760, "end_pos": 566408, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G01360.1", "url": "https://www.ensemblgenomes.org/id/AT4G01360.1" }, { "database": "Ensembl Peptide", "id": "AT4G01360.1", "url": "https://www.ensemblgenomes.org/id/AT4G01360.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JI15", "url": "https://www.uniprot.org/uniprotkb/F4JI15" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JI15", "url": "https://www.uniprot.org/uniprotkb/F4JI15" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G01360", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G01360", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cellular response to hypoxia", "id": "GO:0071456", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071456", "evidence": [ { "database": "UniProtKB", "id": "F4JI15", "url": "https://www.uniprot.org/uniprotkb/F4JI15" } ], "pmid": "" }, { "name": "embryo development ending in seed dormancy", "id": "GO:0009793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009793", "evidence": [ { "database": "UniProtKB", "id": "F4JI15", "url": "https://www.uniprot.org/uniprotkb/F4JI15" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JI15", "url": "https://www.uniprot.org/uniprotkb/F4JI15" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JI15-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 348, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JI15-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JI15" } ], 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}, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JI18-1", "uniprot_ac": "F4JI18", "uniprot_id": "F4JI18_ARATH", "mass": { "chemical_mass": 34272.0, "monoisotopic_mass": 34272.0 }, "refseq": {}, "gene_names": [ { "name": "F2N1.33", "type": "synonym", "evidence": [ { "id": "F4JI18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI18" } ] }, { "name": "F2N1_33", "type": "synonym", "evidence": [ { "id": "F4JI18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI18" } ] } ], "protein_names": [ { 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"MFPLYLYKTQTQGPFSSKTRNYKLGNDKDRSIYISRSNIASTNMFQIGKNALFKNVSKNFLIKGISSSSSSHSTSRKLEGKVALITGGASGIGKATAGKFISHGAKVIIADIQPQIGRETEQELGPSCAYFPCDVTKESDIANAVDFAVSLHTKLDIMYNNAGIPCKTPPSIVDLDLNVFDKVINTNVRGVMAGIKHAARVMIPRNSGSIICAGSVTGMMGGLAQHTYSVSKSAVIGIVRSTASELCKHRIRVNCISPFAITTSFVMDEMRQIYPGVDDSRLIQIVQSTGVLNGEVCEPTDVANAAVYLASDDSKYVNGHNLVVDGGFTTVKTLDFPAPDQVK", "length": 343, "header": "tr|F4JI53-1|F4JI53_ARATH Isoform 1 of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JI53-1" }, "locus": { "chromosome": "4", "start_pos": 1392121, "end_pos": 1393842, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G03140.1", "url": "https://www.ensemblgenomes.org/id/AT4G03140.1" }, { "database": "Ensembl Peptide", "id": "AT4G03140.1", "url": "https://www.ensemblgenomes.org/id/AT4G03140.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of 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"journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JI53", "url": "https://www.uniprot.org/uniprotkb/F4JI53" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G03140", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G03140", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "F4JI53", "url": "https://www.uniprot.org/uniprotkb/F4JI53" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "oxidoreductase activity", "id": 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"https://www.uniprot.org/uniprotkb/F4JI64/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JI64", "url": "https://www.uniprot.org/uniprotkb/F4JI64" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JI64", "locus": {} } ], "crossref": [ { "id": "F4JI64", "url": "https://alphafold.ebi.ac.uk/entry/F4JI64", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G03200", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G03200", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd02955", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02955", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "828041", "url": "https://www.ncbi.nlm.nih.gov/gene/828041", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008928", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008928", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G03200", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G03200", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PFYFGTY", "url": "https://omabrowser.org/oma/group/PFYFGTY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR42899", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42899", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42899:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42899:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03190", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03190", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G03200", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G03200", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JI63", "url": "https://www.uniprot.org/uniprotkb/F4JI63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JI63-1", "url": "https://www.uniprot.org/uniprotkb/F4JI63-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JI64", "url": "https://www.uniprot.org/uniprotkb/F4JI64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JI64-1", "url": "https://www.uniprot.org/uniprotkb/F4JI64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVESFEDEEVAKLLNNSFVSIKVDREERPDVDKVYMSFVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPNDNYGRPGFKTLLKKVKDAWNSKRDTLVKSGTYAIEELSKALSASTGADKLSDGISREAVSTCAKQLSRSYDSEFGGFGSAPKFPRPVEIQLMLYHYKKLKESGKTSEADEEKSMVLFSLQGMANGGMHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANVYLDGFSITKDVMYSYVARDILDYLRRDMIAPEGGIFSAEDADSFEFEGAKRKKEGAFYIWTSDEIDEVLGENADLFKEHYYVKKSGNCDLSSRSDPHNEFAGKNVLIERNETSAMASKFSLSVEKYQEILGECRRKLFDVRLKRPKPHLDDKIIVSWNGLVISSFARASKILKAEPESTKYYFPVVNSQPEDYIEVAEKAALFIRGNLYDEQSRRLQHSYRQGPSKAPAFLDDYAFLISGLLDLYENGGGIEWLKWAIKLQETQDELYLDREGGAYFNTEGQDPSVLLRVKEDHDGAEPSGNSVSAINLVRLASIVAGEKAESYLNTAHRLLAVFELRLRELAVAVPLMCCSADMISVPSRKQVVLVGSKSSPELTNMLSAAHSVYDPNKTVIHIDPSSSDEIEFWEEHNSNVAEMAKKNRNSEKVVALVCQHFTCSPPVFDSSSLTRLLSK", "length": 685, "header": "tr|F4JI64-1|F4JI64_ARATH Isoform 1 of Catalytics OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JI64-1" }, "isoforms": [ { "isoform_ac": "F4JI63-1", "url": "https://www.uniprot.org/uniprotkb/F4JI63/entry", "sequence": { "sequence": "MLMKSLHLLSSSILLHRFASRSIASLSTLPRRRNIVRIHNPSFSSPFPPILSRPISSGKVLAMAEESSSSSTSSTSQKHTNRLAAEHSPYLLQHAHNPVDWYPWGEEAFEEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEEVAKLLNNSFVSIKVDREERPDVDKVYMSFVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPNDNYGRPGFKTLLKKVKDAWNSKRDTLVKSGTYAIEELSKALSASTGADKLSDGISREAVSTCAKQLSRSYDSEFGGFGSAPKFPRPVEIQLMLYHYKKLKESGKTSEADEEKSMVLFSLQGMANGGMHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANVYLDGFSITKDVMYSYVARDILDYLRRDMIAPEGGIFSAEDADSFEFEGAKRKKEGAFYIWTSDEIDEVLGENADLFKEHYYVKKSGNCDLSSRSDPHNEFAGKNVLIERNETSAMASKFSLSVEKYQEILGECRRKLFDVRLKRPKPHLDDKIIVSWNGLVISSFARASKILKAEPESTKYYFPVVNSQPEDYIEVAEKAALFIRGNLYDEQSRRLQHSYRQGPSKAPAFLDDYAFLISGLLDLYENGGGIEWLKWAIKLQETQDELYLDREGGAYFNTEGQDPSVLLRVKEDHDGAEPSGNSVSAINLVRLASIVAGEKAESYLNTAHRLLAVFELRLRELAVAVPLMCCSADMISVPSRKQVVLVGSKSSPELTNMLSAAHSVYDPNKTVIHIDPSSSDEIEFWEEHNSNVAEMAKKNRNSEKVVALVCQHFTCSPPVFDSSSLTRLLSK", "length": 818, "header": "tr|F4JI63-1|F4JI64_ARATH Computationally mapped isoform of Catalytics OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JI64-1" }, "locus": { "chromosome": "4", "start_pos": 1408159, "end_pos": 1412756, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G03200.1", "url": "https://www.ensemblgenomes.org/id/AT4G03200.1" }, { "database": "Ensembl Peptide", "id": "AT4G03200.1", "url": "https://www.ensemblgenomes.org/id/AT4G03200.1" } ] } }, { "isoform_ac": "F4JI64-1", "url": "https://www.uniprot.org/uniprotkb/F4JI64/entry", "sequence": { "sequence": "MEVESFEDEEVAKLLNNSFVSIKVDREERPDVDKVYMSFVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPNDNYGRPGFKTLLKKVKDAWNSKRDTLVKSGTYAIEELSKALSASTGADKLSDGISREAVSTCAKQLSRSYDSEFGGFGSAPKFPRPVEIQLMLYHYKKLKESGKTSEADEEKSMVLFSLQGMANGGMHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANVYLDGFSITKDVMYSYVARDILDYLRRDMIAPEGGIFSAEDADSFEFEGAKRKKEGAFYIWTSDEIDEVLGENADLFKEHYYVKKSGNCDLSSRSDPHNEFAGKNVLIERNETSAMASKFSLSVEKYQEILGECRRKLFDVRLKRPKPHLDDKIIVSWNGLVISSFARASKILKAEPESTKYYFPVVNSQPEDYIEVAEKAALFIRGNLYDEQSRRLQHSYRQGPSKAPAFLDDYAFLISGLLDLYENGGGIEWLKWAIKLQETQDELYLDREGGAYFNTEGQDPSVLLRVKEDHDGAEPSGNSVSAINLVRLASIVAGEKAESYLNTAHRLLAVFELRLRELAVAVPLMCCSADMISVPSRKQVVLVGSKSSPELTNMLSAAHSVYDPNKTVIHIDPSSSDEIEFWEEHNSNVAEMAKKNRNSEKVVALVCQHFTCSPPVFDSSSLTRLLSK", "length": 685, "header": "tr|F4JI64-1|F4JI64_ARATH Isoform 1 of Catalytics OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JI64-1" }, "locus": { "chromosome": "4", "start_pos": 1408159, "end_pos": 1412756, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G03200.2", "url": "https://www.ensemblgenomes.org/id/AT4G03200.2" }, { "database": "Ensembl Peptide", "id": "AT4G03200.2", "url": "https://www.ensemblgenomes.org/id/AT4G03200.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 103, "end_pos": 103, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JI63", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JI63" } ], "site_lbl": "Tyr103" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JI63", "url": "https://www.uniprot.org/uniprotkb/F4JI63" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "F4JI63", "url": "https://www.uniprot.org/uniprotkb/F4JI63" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JI63", "url": "https://www.uniprot.org/uniprotkb/F4JI63" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G03200", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G03200", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1RT97-1", "protein_name": "Spermatogenesis-associated protein 20", "gene_name": "SPATA20", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSHLSSPPPKHKGEHKGHGLPRGSERGSSPRDKDRSVTVSSSVPMPAGGKGSRTNCSQSAPQKTPNRLINEKSPYLLQHAYNPVDWYPWGQEAFDKARKENKPIFLSVGYSTCHWCHMMEEESFQNEEIGRLLSEDFVSVKVDREERPDVDKVYMTFVQATSSGGGWPMSVWLTPNLQPFVGGTYFPPEDGLTRVGFRTVLLRIREQWKQNKKTLLENSQRVTTALLARSEISMGDRQLPPSAATMNSRCFQQLDEGYDEEYGGFAEAPKFPTPVILSFLFSYWLSHRLTQDGSRAQQMALHTLKMMANGGIRDHVGQGFHRYSTDRQWHVPHFEKMLYDQAQLTVAYSQAFQISGDEFYSDVAKGILQYVARNLSHRSGGFYSAEDADSPPERGMRPKEGAFYLWTVKEVQQLLPEHVPGATEPLTSGQLLMKHYGLTEAGNISPSQDPKGELQGQNVLTVRYSLELTAARFGLDVEAVQTLLNTGLEKLFQARKHRPKPHLDSKMLAAWNGLMVSGFAVTGAVLGQERLINYAINGAKFLKRHMFDVASGRLMRTCYAGSGGTVEHSNPPCWGFLEDYTFVVRGLLDLYEASQESAWLEWALRLQDTQDRLFWDSRGGGYFCSEAELGAGLPLRLKDDQDGAEPSANSVSAHNLLRLHGFTGHKDWMDKCVCLLTAFSERMRRVPVALPEMVRALSAHQQTLKQIVICGDPQAKDTKALLQCVHSIYIPNKVLILADGDPSSFLSRQLPFLGTLRRLEDRATAYVCENQACSMPITEPCELRKLLHQ", "length": 789 }, "evidence": [ { "id": "F4JI64", "url": "https://omabrowser.org/oma/group/F4JI64/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q55BX2-1", "protein_name": "DUF255 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSSKFFSLYSKTKLLKSTTSNFILFNKLKYSSNNQDFEKRFFKMSDNKTTTTTTTATSTSTPTPSTLNDKSTIKTTPITDNNNNNENFKYTNKLINEKSPYLLKHAHNPVDWLPWGEEAFKIARDNDKLIFLSVGYMACHWCNVMERECFENVEIAKVMNEYCVNIKIDREERPDIDKIYMTYLTEISGSGGWPMSIWLTPQLHPITGGTYFAPEAKYGRPGFPDLIKKLDKLWRKDREMVQERADSFIKFLKEEKPMGNINNALSSQTIEKCFQQIMKGYDPIDGGYSDAPKFPRCSIFNLLLMTLKEDYSKQVGSLDKLVFTLEKMANGGMYDQVGGGFHRYSVTSDWMIPHFEKMLYDNAQLASVYLDAYQITKSPLFERVAKEILHYVSTKLTHTLGGFFSAEDADSLNLEINEKQEGAFYVWSYQDIKKAIQDKDDIEIYSFHHGLIENGNVDPKDDPHNEFKDKNVITIVKSLKETAAYFKKTQEEIEKSLNQSKEKLFKFREQFKPKPQLDDKIIVSWNGLMVSSFCKAYQLFKDEKYLNSAIKSIEFIKTHLYDSVGDDNDYDDEDDKLNNCRLIRNYKDGPSKIHAFTDDYSFLIQALLDLYQVTFDYKHLEWAMKLQKQQDNLFYDLENGGYYSTSGLDKSILSRMKEEHDGAEPSPQSISVSNLLKLYSITYNEAYKEKAKKTLENCSLYLEKAPLVFPQMVCSLYLYLNSINTIILSTNSNDNQQKQQLLSILDEIHSNYIPNKLILLNDHSNNSITQFFEKSTSNLNLSLSTPVYDKTTFSLCNPNGCTISTNQLQQIKSNLINQIYPKY", "length": 824 }, "evidence": [ { "id": "F4JI64", "url": "https://omabrowser.org/oma/group/F4JI64/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6T393-1", "protein_name": "Spermatogenesis-associated protein 20", "gene_name": "Spata20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHHSPPPPKHKGEHKGHGLPRGSERGSSSRGKDRSASVSNSVPMPAGGKASRTNCPPPAPQKTANRLINEKSPYLLQHAHNPVDWYPWGQEAFDKAKKENKPIFLSVGYSTCHWCHMMEEESFQNEEIGHLLNENFVSVMVDREERPDVDKVYMTFVQATSSGGGWPMNVWLTPSLQPFVGGTYFPPEDGLTRVGFRTVLMRICDQWKQNKNTLLENSQRVTTALLARSEISVGDRQLPPSAATMNSRCFQQLDEGYDEEYGGFAEAPKFPTPVILNFLFSYWLSHRVTQDGSRAQQMALHTLKMMANGGIRDHVGQGFHRYSTDRQWHIPHFEKMLYDQAQLSVVYCQAFQISGDEFFSDVAKGILQYVTRNLSHRSGGFYSAEDADSPPERGVKPQEGALYLWTVKEVQQLLPEPVGGASEPLTSGQLLMKHYGLSEAGNINPTQDVNGEMHGQNVLTVRDSLELTGARYGLEVEAVRALLNTGLEKLFQARKHRPKAHLDNKMLAAWNGLMVSGFAVAGSVLGMEKLVTQATNGAKFLKRHMFDVSSGRLKRTCYAGAGGTVEQSNPPCWGFLEDYAFVVRGLLDLYEASQESSWLEWALRLQDIQDKLFWDSHGGGYFCSEAELGTDLPLRLKDDQDGAEPSANSVSAHNLLRLHGLTGHKDWMDKCVCLLTAFSERMRRVPVALPEMVRALSAQQQTLKQIVICGDPQAKDTKALLQCVHSIYIPNKVLILADGDPSSFLSRQLPFLSNLRRVEDRATVYIFENQACSMPITDPCELRKLLHQ", "length": 789 }, "evidence": [ { "id": "F4JI64", "url": "https://omabrowser.org/oma/group/F4JI64/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80YT5-1", "protein_name": "Spermatogenesis-associated protein 20", "gene_name": "Spata20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSHHSSPPPKHKGEHKGHGLPRGSERGSSSRDKDRSATTVSSSAPMPAGGKSSRTNCPPPAPPKTVNRLINEKSPYLLQHAYNPVDWYPWGQEAFDKAKKENKPIFLSVGYSTCHWCHMMEEESFQNEEIGRLLNENFICVMVDREERPDVDKVYMTFVQATSSGGGWPMNVWLTPGLQPFVGGTYFPPEDGLTRVGFRTVLMRICDQWKLNKNTLLENSQRVTTALLARSEISVGDRQIPASAATMNSRCFQQLDEGYDEEYGGFAEAPKFPTPVILNFLFSYWLSHRLTQDGSRAQQMALHTLKMMANGGIQDHVGQGFHRYSTDRQWHIPHFEKMLYDQAQLSVVYTQAFQISGDEFYADVAKGILQYVTRTLSHRSGGFYSAEDADSPPERGMKPQEGAYYVWTVKEVQQLLPEPVVGASEPLTSGQLLMKHYGLSEVGNINSSQDPNGELHGQNVLMVRYSLELTAARYGLEVEAVRALLNTGLEKLFQARKHRPKAHLDNKMLAAWNGLMVSGFAVTGAALGMEKLVAQATSGAKFLKRHMFDVSSGRLKRTCYAGTGGTVEQSNPPCWGFLEDYAFVVRGLLDLYEASQESSWLEWALRLQDTQDKLFWDPRGGGYFCSEAELGADLPLRLKDDQDGAEPSANSVSAHNLLRLHSFTGHKDWMDKCVCLLTAFSERMRRVPVALPEMVRTLSAQQQTLKQIVICGDPQAKDTKALLQCVHSIYVPNKVLILADGDPSSFLSRQLPFLSSLRRVEDRATVYIFENQACSMPITDPCELRKLLHQ", "length": 790 }, "evidence": [ { "id": "F4JI64", "url": "https://omabrowser.org/oma/group/F4JI64/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TB22-1", "protein_name": "Spermatogenesis-associated protein 20", "gene_name": "SPATA20", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLGARAWLGRVLLLPRAGAGLAASRRGSSSRDKDRSATVSSSVPMPAGGKGSHPSSTPQRVPNRLIHEKSPYLLQHAYNPVDWYPWGQEAFDKARKENKPIFLSVGYSTCHWCHMMEEESFQNEEIGRLLSEDFVSVKVDREERPDVDKVYMTFVQATSSGGGWPMNVWLTPNLQPFVGGTYFPPEDGLTRVGFRTVLLRIREQWKQNKNTLLENSQRVTTALLARSEISVGDRQLPPSAATVNNRCFQQLDEGYDEEYGGFAEAPKFPTPVILSFLFSYWLSHRLTQDGSRAQQMALHTLKMMANGGIRDHVGQGFHRYSTDRQWHVPHFEKMLYDQAQLAVAYSQAFQLSGDEFYSDVAKGILQYVARSLSHRSGGFYSAEDADSPPERGQRPKEGAYYVWTVKEVQQLLPEPVLGATEPLTSGQLLMKHYGLTEAGNISPSQDPKGELQGQNVLTVRYSLELTAARFGLDVEAVRTLLNSGLEKLFQARKHRPKPHLDSKMLAAWNGLMVSGYAVTGAVLGQDRLINYATNGAKFLKRHMFDVASGRLMRTCYTGPGGTVEHSNPPCWGFLEDYAFVVRGLLDLYEASQESAWLEWALRLQDTQDKLFWDSQGGGYFCSEAELGAGLPLRLKDDQDGAEPSANSVSAHNLLRLHGFTGHKDWMDKCVCLLTAFSERMRRVPVALPEMVRALSAQQQTLKQIVICGDRQAKDTKALVQCVHSVYIPNKVLILADGDPSSFLSRQLPFLSTLRRLEDQATAYVCENQACSVPITDPCELRKLLHP", "length": 786 }, "evidence": [ { "id": "F4JI64", "url": "https://omabrowser.org/oma/group/F4JI64/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ 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"n_glycosylation_sequon" }, { "start_pos": 622, "end_pos": 624, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JI64-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 685, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JI64-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JI64" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JI64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI64" }, { "id": "PF03190", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03190" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Spermatogenesis-associated protein 20-like TRX", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 108, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 103 ], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 }, { "start_pos": 343, "end_pos": 345 }, { "start_pos": 622, "end_pos": 624 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JI85-1", "uniprot_ac": "F4JI85", "uniprot_id": "F4JI85_ARATH", "mass": { "chemical_mass": 36370.0, "monoisotopic_mass": 36370.0 }, "refseq": {}, "gene_names": [ { "name": "F4C21.30", "type": "synonym", "evidence": [ { "id": "F4JI85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI85" } ] }, { "name": "F4C21_30", "type": "synonym", "evidence": [ { "id": "F4JI85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI85" } ] } ], "protein_names": [ { "name": "Ubiquitin family protein", "type": "synonym", "evidence": [ { "id": "F4JI85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI85/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JI85", "url": "https://www.uniprot.org/uniprotkb/F4JI85" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JI85", "locus": {} } ], "crossref": [ { "id": "F4JI85", "url": "https://alphafold.ebi.ac.uk/entry/F4JI85", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G03360", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G03360", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827958", "url": "https://www.ncbi.nlm.nih.gov/gene/827958", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G03360", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G03360", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR10621", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10621", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10621:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10621:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G03360", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G03360", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JI85", "url": "https://www.uniprot.org/uniprotkb/F4JI85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JI85-1", "url": "https://www.uniprot.org/uniprotkb/F4JI85-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFEYGIFHNSRILLSISPDDNPTQNQVPQSPSNPIHDTMIKVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQIRHNSRILLSISPDDNPTQNQVPQTNQSPSTPSNPIHEFVNNQDSPLSPKSSALTMEKFSKNQQDRPPLMRVVAKRIDNGSSRPSYSLDELLAPRDSSTVAVGSIRNRDQEVKNRVSSPSDSVEEVINITDSLAMKMIVMVQPYGYTRMIQVEVTADDNVEELRKELVKMQERGELNLPQGMYYLIHKHKQAVLHEDQSFLTNGVAYGDTIQISQGYVKLTSG", "length": 322, "header": "tr|F4JI85-1|F4JI85_ARATH Isoform 1 of Ubiquitin family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JI85-1" }, "isoforms": [ { "isoform_ac": "F4JI85-1", "url": "https://www.uniprot.org/uniprotkb/F4JI85/entry", "sequence": { "sequence": "MFEYGIFHNSRILLSISPDDNPTQNQVPQSPSNPIHDTMIKVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQIRHNSRILLSISPDDNPTQNQVPQTNQSPSTPSNPIHEFVNNQDSPLSPKSSALTMEKFSKNQQDRPPLMRVVAKRIDNGSSRPSYSLDELLAPRDSSTVAVGSIRNRDQEVKNRVSSPSDSVEEVINITDSLAMKMIVMVQPYGYTRMIQVEVTADDNVEELRKELVKMQERGELNLPQGMYYLIHKHKQAVLHEDQSFLTNGVAYGDTIQISQGYVKLTSG", "length": 322, "header": "tr|F4JI85-1|F4JI85_ARATH Isoform 1 of Ubiquitin family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JI85-1" }, "locus": { "chromosome": "4", "start_pos": 1474869, "end_pos": 1475968, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G03360.1", "url": "https://www.ensemblgenomes.org/id/AT4G03360.1" }, { "database": "Ensembl Peptide", "id": "AT4G03360.1", "url": "https://www.ensemblgenomes.org/id/AT4G03360.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 130, "start_aa": "Thr", "end_pos": 130, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr130", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JI85", "url": "https://www.uniprot.org/uniprotkb/F4JI85" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JI85", "url": "https://www.uniprot.org/uniprotkb/F4JI85" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G03360", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G03360", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": 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"F4JIB4-1", "uniprot_ac": "F4JIB4", "uniprot_id": "F4JIB4_ARATH", "mass": { "chemical_mass": 30643.0, "monoisotopic_mass": 30643.0 }, "refseq": { "ac": "NP_680661", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680661" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4JIB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JIB4/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_680661", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680661" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JIB4", "url": "https://www.uniprot.org/uniprotkb/F4JIB4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JIB4", "locus": {} } ], "crossref": [ { "id": "F4JIB4", "url": "https://alphafold.ebi.ac.uk/entry/F4JIB4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G08593", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G08593", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "826421", "url": "https://www.ncbi.nlm.nih.gov/gene/826421", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G08593", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G08593", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_680661", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680661", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G08593", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G08593", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JIB4", "url": "https://www.uniprot.org/uniprotkb/F4JIB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JIB4-1", "url": "https://www.uniprot.org/uniprotkb/F4JIB4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQSRDIGELLFVWEQWLDGEGDGERQNPNLEVGCGLQSCKVATPSVWPISYHEGSALRISLTTGLYLGPLLASYSESLSRTHDIASFWIIRTPIKQPQVRLVQSLTWPPTVSQPIECVWQVLDPCIKALQRILLVLEAILLYGEKKLFSFMERTIPSCLFFLTILLTCVEDVMRLDPARPTVMESFLTSRCRMTVTTHQPPELFVEVLATNHDVACGKMLFSSCLQLFVDLQSFYPNYLYVASTCALSLSFKALMFWELFSIFVIFCFG", "length": 270, "header": "tr|F4JIB4-1|F4JIB4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JIB4-1" }, "isoforms": [ { "isoform_ac": "F4JIB4-1", "url": "https://www.uniprot.org/uniprotkb/F4JIB4/entry", "sequence": { "sequence": "MSQSRDIGELLFVWEQWLDGEGDGERQNPNLEVGCGLQSCKVATPSVWPISYHEGSALRISLTTGLYLGPLLASYSESLSRTHDIASFWIIRTPIKQPQVRLVQSLTWPPTVSQPIECVWQVLDPCIKALQRILLVLEAILLYGEKKLFSFMERTIPSCLFFLTILLTCVEDVMRLDPARPTVMESFLTSRCRMTVTTHQPPELFVEVLATNHDVACGKMLFSSCLQLFVDLQSFYPNYLYVASTCALSLSFKALMFWELFSIFVIFCFG", "length": 270, "header": "tr|F4JIB4-1|F4JIB4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JIB4-1" }, "locus": { "chromosome": "4", "start_pos": 5469345, "end_pos": 5470466, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G08593.1", "url": "https://www.ensemblgenomes.org/id/AT4G08593.1" }, { "database": "Ensembl Peptide", "id": "AT4G08593.1", "url": "https://www.ensemblgenomes.org/id/AT4G08593.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JIB4", "url": "https://www.uniprot.org/uniprotkb/F4JIB4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JIB4", "url": "https://www.uniprot.org/uniprotkb/F4JIB4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G08593", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G08593", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JIB4", "url": "https://www.uniprot.org/uniprotkb/F4JIB4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JIB4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 270, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JIB4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JIB4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JIB7-1", "uniprot_ac": "F4JIB7", "uniprot_id": "F4JIB7_ARATH", "mass": { "chemical_mass": 19126.0, "monoisotopic_mass": 19126.0 }, "refseq": { "ac": "NP_192604", "name": "ATP binding protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192604" }, "gene_names": [ { "name": "T3F12.5", "type": "synonym", "evidence": [ { "id": "NP_192604", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192604" }, { "id": "F4JIB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JIB7" } ] }, { "name": "T3F12_5", "type": "synonym", "evidence": [ { "id": "NP_192604", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192604" }, { "id": "F4JIB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JIB7" } ] } ], "protein_names": [ { "name": "ATP binding protein", "type": "synonym", "evidence": [ { "id": "NP_192604", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192604" }, { "id": "F4JIB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JIB7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JIB7", "url": "https://www.uniprot.org/uniprotkb/F4JIB7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JIB7", "locus": {} } ], "crossref": [ { "id": "F4JIB7", "url": "https://alphafold.ebi.ac.uk/entry/F4JIB7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G08640", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G08640", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "826429", "url": "https://www.ncbi.nlm.nih.gov/gene/826429", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G08640", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G08640", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PF00118", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00118", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_192604", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192604", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G08640", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G08640", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JIB7", "url": "https://www.uniprot.org/uniprotkb/F4JIB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JIB7-1", "url": "https://www.uniprot.org/uniprotkb/F4JIB7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTMNIDDVHVAKILGVDSRKSCVVCGIVFKSDDVGNIRHPLKNAKVHNFGKSKEAMLETLVKDIAFSNVKVIVSRSSICEMTLRFCKIYKIMVLQISSDIDINSLCSIVGAIDSSQHFQPHHLGYMDSTSLSEIAKRAVKKAERDAERAERASQKKAEKFKSKLQAEKKKD", "length": 171, "header": "tr|F4JIB7-1|F4JIB7_ARATH Isoform 1 of ATP binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JIB7-1" }, "isoforms": [ { "isoform_ac": "F4JIB7-1", "url": "https://www.uniprot.org/uniprotkb/F4JIB7/entry", "sequence": { "sequence": "MTMNIDDVHVAKILGVDSRKSCVVCGIVFKSDDVGNIRHPLKNAKVHNFGKSKEAMLETLVKDIAFSNVKVIVSRSSICEMTLRFCKIYKIMVLQISSDIDINSLCSIVGAIDSSQHFQPHHLGYMDSTSLSEIAKRAVKKAERDAERAERASQKKAEKFKSKLQAEKKKD", "length": 171, "header": "tr|F4JIB7-1|F4JIB7_ARATH Isoform 1 of ATP binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JIB7-1" }, "locus": { "chromosome": "4", "start_pos": 5513313, "end_pos": 5514174, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G08640.1", 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"categories": [ "Protein" ] }, { "id": "AT4G21140", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G21140", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JIM4", "url": "https://www.uniprot.org/uniprotkb/F4JIM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JIM4-1", "url": "https://www.uniprot.org/uniprotkb/F4JIM4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIRFARPKPIIDSVSYNLLQKCYASGTPKGKSKLKTGQSLKRNKLTIKKGGGNGGGRGGDEVDKGKGRISDQCINAPCPVRYLRPKEREREARREKLGLISKARQKEIDFQKKGGSFTMGVTTAPMRIGTPGLDYISLGIFTEDELPKYKVTVEDGIRLAKEYSRVLMREHRARRVAEISLMKMRNAAVEALPENLKKAALVRDLTPFPVSRGTATLTPPIEGYLERIMNAAARKSSGKEKLR", "length": 243, "header": "tr|F4JIM4-1|F4JIM4_ARATH Isoform 1 of Copper ion-binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JIM4-1" }, "isoforms": [ { "isoform_ac": "F4JIM4-1", "url": "https://www.uniprot.org/uniprotkb/F4JIM4/entry", "sequence": { "sequence": "MIRFARPKPIIDSVSYNLLQKCYASGTPKGKSKLKTGQSLKRNKLTIKKGGGNGGGRGGDEVDKGKGRISDQCINAPCPVRYLRPKEREREARREKLGLISKARQKEIDFQKKGGSFTMGVTTAPMRIGTPGLDYISLGIFTEDELPKYKVTVEDGIRLAKEYSRVLMREHRARRVAEISLMKMRNAAVEALPENLKKAALVRDLTPFPVSRGTATLTPPIEGYLERIMNAAARKSSGKEKLR", "length": 243, "header": "tr|F4JIM4-1|F4JIM4_ARATH Isoform 1 of Copper ion-binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JIM4-1" }, "locus": { "chromosome": "4", "start_pos": 11277185, "end_pos": 11278318, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G21140.1", "url": "https://www.ensemblgenomes.org/id/AT4G21140.1" }, { "database": "Ensembl Peptide", "id": "AT4G21140.1", "url": "https://www.ensemblgenomes.org/id/AT4G21140.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JIM4", "url": "https://www.uniprot.org/uniprotkb/F4JIM4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JIM4", "url": "https://www.uniprot.org/uniprotkb/F4JIM4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G21140", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G21140", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrial large ribosomal subunit", "id": "GO:0005762", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005762", "evidence": [ { "database": "UniProtKB", "id": "F4JIM4", "url": "https://www.uniprot.org/uniprotkb/F4JIM4" } ], "pmid": "" }, { "name": "mitochondrial ribosome", "id": "GO:0005761", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005761", "evidence": [ { "database": "UniProtKB", "id": "F4JIM4", "url": "https://www.uniprot.org/uniprotkb/F4JIM4" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JIM4", "url": "https://www.uniprot.org/uniprotkb/F4JIM4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JIM4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 243, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JIM4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JIM4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], 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{ "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JIW2-1", "uniprot_ac": "F4JIW2", "uniprot_id": "F4JIW2_ARATH", "mass": { "chemical_mass": 47812.0, "monoisotopic_mass": 47812.0 }, "refseq": { "ac": "NP_194478", "name": "Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194478" }, "gene_names": [ { "name": "F27G19.80", "type": "synonym", "evidence": [ { "id": "NP_194478", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194478" }, { "id": "F4JIW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JIW2" } ] }, { "name": "F27G19_80", "type": "synonym", "evidence": [ { "id": "NP_194478", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194478" }, { "id": "F4JIW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JIW2" } ] } ], "protein_names": [ { "name": "Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein", "type": "synonym", "evidence": [ { "id": "NP_194478", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194478" }, { "id": "F4JIW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JIW2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JIW2", "url": "https://www.uniprot.org/uniprotkb/F4JIW2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JIW2", "locus": {} } ], "crossref": [ { "id": "828857", "url": "https://www.ncbi.nlm.nih.gov/gene/828857", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003406", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003406", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044610", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044610", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G27480", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G27480", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KTPVFLW", "url": "https://omabrowser.org/oma/group/KTPVFLW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45719", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45719", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45719:SF20", "url": 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"MASSNSEKRWIFPLAMASLMFIFLIAASFNMGLLSSVRSINSLIFSYNLSTTNETRVEFAESKINQSSHPPPVQPSLPRFGYLVSGSRGDLESLWRVLRTLYHPRNQYVVHLDLESPAEERLELAKRVSQDPVFSDVGNVHMITKANLVTYRGPTMVANTLHACAILLKQSKEWDWFINLSASDYPLVTQDDLIDTFSGLDRNLNFIDHSSKLGWKEEKRAKPLIIDPGLYSTKKSDVFWVTPRRTMPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFLSTPEGYFHTVICNAPEYSSTVLNHDLHFISWDRPPKQHPRALTINDTERMIASGSAFSRKFRHNDPALDKIDKELLGRGNGNFTPGGWCAGEPKCSRVGDPSKIKPGPGANRLRVLVSRLVLTSKLTQRQCR", "length": 421, "header": "tr|F4JIW2-1|F4JIW2_ARATH Isoform 1 of Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JIW2-1" }, "isoforms": [ { "isoform_ac": "F4JIW2-1", "url": "https://www.uniprot.org/uniprotkb/F4JIW2/entry", "sequence": { "sequence": "MASSNSEKRWIFPLAMASLMFIFLIAASFNMGLLSSVRSINSLIFSYNLSTTNETRVEFAESKINQSSHPPPVQPSLPRFGYLVSGSRGDLESLWRVLRTLYHPRNQYVVHLDLESPAEERLELAKRVSQDPVFSDVGNVHMITKANLVTYRGPTMVANTLHACAILLKQSKEWDWFINLSASDYPLVTQDDLIDTFSGLDRNLNFIDHSSKLGWKEEKRAKPLIIDPGLYSTKKSDVFWVTPRRTMPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFLSTPEGYFHTVICNAPEYSSTVLNHDLHFISWDRPPKQHPRALTINDTERMIASGSAFSRKFRHNDPALDKIDKELLGRGNGNFTPGGWCAGEPKCSRVGDPSKIKPGPGANRLRVLVSRLVLTSKLTQRQCR", "length": 421, "header": "tr|F4JIW2-1|F4JIW2_ARATH Isoform 1 of Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JIW2-1" }, "locus": { "chromosome": "4", "start_pos": 13736655, "end_pos": 13738915, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G27480.1", "url": "https://www.ensemblgenomes.org/id/AT4G27480.1" }, { "database": "Ensembl Peptide", "id": "AT4G27480.1", "url": "https://www.ensemblgenomes.org/id/AT4G27480.1" } ] } } ], "glycosylation": [ { 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"https://www.ncbi.nlm.nih.gov/protein/NP_001190975" }, { "id": "F4JJ40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JJ40/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JJ40", "url": "https://www.uniprot.org/uniprotkb/F4JJ40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JJ40", "locus": {} } ], "crossref": [ { "id": "F4JJ40", "url": "https://alphafold.ebi.ac.uk/entry/F4JJ40", "database": "AlphaFoldDB", "categories": [] }, { "id": "10723046", "url": "https://www.ncbi.nlm.nih.gov/gene/10723046", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G39925", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G39925", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001190975", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190975", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G39925", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G39925", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JJ40", "url": "https://www.uniprot.org/uniprotkb/F4JJ40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JJ40-1", "url": "https://www.uniprot.org/uniprotkb/F4JJ40-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRQANNSNPTGTVKYEGRFEIISLSGSFLNSERNENHGGVLDHTLSHPAYLHRWSSWHEGP", "length": 62, "header": "tr|F4JJ40-1|F4JJ40_ARATH Isoform 1 of AT hook motif DNA-binding family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JJ40-1" }, "isoforms": [ { "isoform_ac": "F4JJ40-1", "url": "https://www.uniprot.org/uniprotkb/F4JJ40/entry", "sequence": { "sequence": "MLRQANNSNPTGTVKYEGRFEIISLSGSFLNSERNENHGGVLDHTLSHPAYLHRWSSWHEGP", "length": 62, "header": "tr|F4JJ40-1|F4JJ40_ARATH Isoform 1 of AT hook motif DNA-binding family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JJ40-1" }, "locus": { "chromosome": "4", "start_pos": 18517409, "end_pos": 18518052, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G39925.1", "url": "https://www.ensemblgenomes.org/id/AT4G39925.1" }, { "database": "Ensembl Peptide", "id": "AT4G39925.1", "url": "https://www.ensemblgenomes.org/id/AT4G39925.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JJ40", "url": "https://www.uniprot.org/uniprotkb/F4JJ40" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JJ40", "url": "https://www.uniprot.org/uniprotkb/F4JJ40" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G39925", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G39925", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F4JJ40", "url": "https://www.uniprot.org/uniprotkb/F4JJ40" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JJ40", "url": "https://www.uniprot.org/uniprotkb/F4JJ40" } ], "pmid": "" } ] } ] }, 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], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JJ77-1", "uniprot_ac": "F4JJ77", "uniprot_id": "F4JJ77_ARATH", "mass": { "chemical_mass": 30901.0, "monoisotopic_mass": 30901.0 }, "refseq": { "ac": "NP_680668", "name": "Major facilitator superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680668" }, "gene_names": [], "protein_names": [ { "name": "Major facilitator superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_680668", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680668" }, { "id": "F4JJ77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JJ77/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JJ77", "url": "https://www.uniprot.org/uniprotkb/F4JJ77" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JJ77", "locus": {} } ], "crossref": [ { "id": "F4JJ77", "url": "https://alphafold.ebi.ac.uk/entry/F4JJ77", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G08878", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G08878", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "826464", "url": "https://www.ncbi.nlm.nih.gov/gene/826464", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G08878", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G08878", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QTHERKH", "url": "https://omabrowser.org/oma/group/QTHERKH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24064", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24064", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00083", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00083", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_680668", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680668", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G08878", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G08878", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JJ77", "url": "https://www.uniprot.org/uniprotkb/F4JJ77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JJ77-1", "url": "https://www.uniprot.org/uniprotkb/F4JJ77-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVPFHGGCSRRYGFFTDSYDLFVISLITKLLGRIYYQVPGSSSPGSLPDGISVAVSGVAFAGTFLGQIFFGCLGDKLGRKRVYGLTLLIMTICSIASSLSFGKDPKTVMVTLCFFRFWLGFGIGGDYPLSATIMFEYANKRTRGAFIASVFAMQGVGILAAGGVSLLVSYLFEIEFPSRAYILDGAASTVPQADYVWRIILMVGALPALLTYYWRMKMPETARYTALVAKNAEQAALDMNKEIFTEVDEKRFALTICQSENWFSRFVFSFNFGPNYPGKT", "length": 280, "header": "tr|F4JJ77-1|F4JJ77_ARATH Isoform 1 of Major facilitator superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JJ77-1" }, "isoforms": [ { "isoform_ac": "F4JJ77-1", "url": "https://www.uniprot.org/uniprotkb/F4JJ77/entry", "sequence": { "sequence": "MVPFHGGCSRRYGFFTDSYDLFVISLITKLLGRIYYQVPGSSSPGSLPDGISVAVSGVAFAGTFLGQIFFGCLGDKLGRKRVYGLTLLIMTICSIASSLSFGKDPKTVMVTLCFFRFWLGFGIGGDYPLSATIMFEYANKRTRGAFIASVFAMQGVGILAAGGVSLLVSYLFEIEFPSRAYILDGAASTVPQADYVWRIILMVGALPALLTYYWRMKMPETARYTALVAKNAEQAALDMNKEIFTEVDEKRFALTICQSENWFSRFVFSFNFGPNYPGKT", "length": 280, "header": "tr|F4JJ77-1|F4JJ77_ARATH Isoform 1 of Major facilitator superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JJ77-1" }, "locus": { "chromosome": "4", "start_pos": 5683180, "end_pos": 5684022, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G08878.1", "url": "https://www.ensemblgenomes.org/id/AT4G08878.1" }, { "database": "Ensembl Peptide", "id": "AT4G08878.1", "url": "https://www.ensemblgenomes.org/id/AT4G08878.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21338:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21338:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001319886", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319886", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G09012", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G09012", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JJ97", "url": "https://www.uniprot.org/uniprotkb/F4JJ97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JJ97-1", "url": "https://www.uniprot.org/uniprotkb/F4JJ97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGLASTKSIRPPPSRYHDDFIEEGSLGRGGYGKVVQCVFKMDQKVYAVKGILMTSVDPLLMPSTAEILTEFWKMTLGLLFGIGRTFRRKRASSLDILSPKRAPRDFYKGKNCKPPGFHTRKAR", "length": 124, "header": "tr|F4JJ97-1|F4JJ97_ARATH Isoform 1 of Mitochondrial ribosomal protein L27 OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=2 CANONICAL=F4JJ97-1" }, "isoforms": [ { "isoform_ac": "F4JJ97-1", "url": "https://www.uniprot.org/uniprotkb/F4JJ97/entry", "sequence": { "sequence": "MVGLASTKSIRPPPSRYHDDFIEEGSLGRGGYGKVVQCVFKMDQKVYAVKGILMTSVDPLLMPSTAEILTEFWKMTLGLLFGIGRTFRRKRASSLDILSPKRAPRDFYKGKNCKPPGFHTRKAR", "length": 124, "header": "tr|F4JJ97-1|F4JJ97_ARATH Isoform 1 of Mitochondrial ribosomal protein L27 OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=2 CANONICAL=F4JJ97-1" }, "locus": { "chromosome": "4", "start_pos": 5780311, "end_pos": 5783464, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G09012.1", "url": "https://www.ensemblgenomes.org/id/AT4G09012.1" }, { "database": "Ensembl Peptide", "id": "AT4G09012.1", "url": "https://www.ensemblgenomes.org/id/AT4G09012.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JJ97", "url": "https://www.uniprot.org/uniprotkb/F4JJ97" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JJ97", "url": "https://www.uniprot.org/uniprotkb/F4JJ97" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G09012", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G09012", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial large ribosomal subunit", "id": "GO:0005762", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005762", "evidence": [ { "database": "UniProtKB", "id": "F4JJ97", "url": "https://www.uniprot.org/uniprotkb/F4JJ97" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JJ97", "url": "https://www.uniprot.org/uniprotkb/F4JJ97" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F4JJ97", "url": "https://www.uniprot.org/uniprotkb/F4JJ97" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F4JJ97", "url": "https://www.uniprot.org/uniprotkb/F4JJ97" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F4JJ97", "url": "https://www.uniprot.org/uniprotkb/F4JJ97" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JJ97-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 124, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JJ97-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JJ97" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"length": 1098, "header": "tr|F4JJB2-1|F4JJB2_ARATH Isoform 1 of T-complex protein 11 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JJB2-1" }, "isoforms": [ { "isoform_ac": "F4JJB2-1", "url": "https://www.uniprot.org/uniprotkb/F4JJB2/entry", "sequence": { "sequence": 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"length": 1098, "header": "tr|F4JJB2-1|F4JJB2_ARATH Isoform 1 of T-complex protein 11 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JJB2-1" }, "locus": { "chromosome": "4", "start_pos": 5828519, "end_pos": 5833676, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G09150.2", "url": "https://www.ensemblgenomes.org/id/AT4G09150.2" }, { "database": "Ensembl Peptide", "id": "AT4G09150.2", "url": "https://www.ensemblgenomes.org/id/AT4G09150.2" } ] } }, { "isoform_ac": "Q9M0R3-1", "url": "https://www.uniprot.org/uniprotkb/Q9M0R3/entry", "sequence": { "sequence": 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"length": 1097, "header": "tr|Q9M0R3-1|F4JJB2_ARATH Computationally mapped isoform of T-complex protein 11 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JJB2-1" }, "locus": { "chromosome": "4", "start_pos": 5828505, "end_pos": 5833725, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G09150.1", "url": "https://www.ensemblgenomes.org/id/AT4G09150.1" }, { "database": "Ensembl Peptide", "id": "AT4G09150.1", "url": "https://www.ensemblgenomes.org/id/AT4G09150.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 377, "end_pos": 377, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9M0R3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M0R3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser377" }, { "start_pos": 43, "end_pos": 43, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9M0R3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M0R3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser43" }, { "start_pos": 83, "end_pos": 83, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9M0R3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M0R3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser83" }, { "start_pos": 88, "end_pos": 88, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9M0R3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M0R3" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser88" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, 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[ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9M0R3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M0R3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9M0R3", "url": "https://www.uniprot.org/uniprotkb/Q9M0R3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9M0R3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M0R3" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "pathway": [ { "id": "ath:AT4G09150", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G09150", "resource": "KEGG Pathway" } ], "orthologs": [], 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Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "F4JJC1", "url": "https://www.uniprot.org/uniprotkb/F4JJC1" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4JJC1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JJC1" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4JJC1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JJC1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": 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S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JJC3", "url": "https://www.uniprot.org/uniprotkb/F4JJC3" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4JJC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JJC3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": 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"MEVRGPVIWMLLMCCIFGNIIGSHNNDFVEAKSFSKSKDLEIEKRLKTINKPAVKVIKTIDGEIYGCVDFFKQPAFDHTSMKNHTYHYKMLSIWKGMRERETNNTAFGYLWENGVGVPLKNIGKRFNGVSMEVCVTAPKVKPAQWSSSRLHFQIGNGFLQVGFLQVGLTSGGRSCFNNYCDAGMIVIRHDYPLGMALPASIRGAETSNYAKFNVYKVFLFLNTSH", "length": 225, "header": "tr|F4JJC8-1|F4JJC8_ARATH Isoform 1 of Neprosin PEP catalytic domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JJC8-1" }, "locus": { "chromosome": "4", "start_pos": 8595985, "end_pos": 8597430, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15056.1", "url": "https://www.ensemblgenomes.org/id/AT4G15056.1" }, { "database": "Ensembl Peptide", "id": "AT4G15056.1", "url": "https://www.ensemblgenomes.org/id/AT4G15056.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller 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A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JJC8", "url": "https://www.uniprot.org/uniprotkb/F4JJC8" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JJD2-1", "uniprot_ac": "F4JJD2", "uniprot_id": "F4JJD2_ARATH", "mass": { "chemical_mass": 19152.0, "monoisotopic_mass": 19152.0 }, "refseq": { "ac": "NP_680691", "name": "FBD-like domain family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680691" }, "gene_names": [], "protein_names": [ { "name": "FBD-like domain family protein", "type": "synonym", "evidence": [ { "id": "NP_680691", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680691" }, { "id": "F4JJD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JJD2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, 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"Organism-specific" ] }, { "id": "827888", "url": "https://www.ncbi.nlm.nih.gov/gene/827888", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G21366", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G21366", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WNANEAT", "url": "https://omabrowser.org/oma/group/WNANEAT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR27002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR27002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR27002:SF150", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR27002:SF150", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07714", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07714", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_680732", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680732", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G21366", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G21366", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JJH9", "url": "https://www.uniprot.org/uniprotkb/F4JJH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JJH9-1", "url": "https://www.uniprot.org/uniprotkb/F4JJH9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPEYAMEGIFSVKSDVFSFGVLVLEIVSGKRNRGFHNSGQDNNLLGYTWENWKEGKGLEIVDSIIVDSSSSMSLFQPHEVLRCIQIGLLCVQERAEDRPKMSSVIVPFCTR", "length": 112, "header": "tr|F4JJH9-1|F4JJH9_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JJH9-1" }, "isoforms": [ { "isoform_ac": "F4JJH9-1", "url": "https://www.uniprot.org/uniprotkb/F4JJH9/entry", "sequence": { "sequence": "MSPEYAMEGIFSVKSDVFSFGVLVLEIVSGKRNRGFHNSGQDNNLLGYTWENWKEGKGLEIVDSIIVDSSSSMSLFQPHEVLRCIQIGLLCVQERAEDRPKMSSVIVPFCTR", "length": 112, "header": "tr|F4JJH9-1|F4JJH9_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JJH9-1" }, "locus": { "chromosome": "4", "start_pos": 11383541, "end_pos": 11383955, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G21366.1", "url": "https://www.ensemblgenomes.org/id/AT4G21366.1" }, { "database": "Ensembl Peptide", "id": "AT4G21366.1", "url": 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Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JJH9", "url": "https://www.uniprot.org/uniprotkb/F4JJH9" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JJH9", "url": "https://www.uniprot.org/uniprotkb/F4JJH9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G21366", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G21366", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": 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"crossref": [ { "id": "F4JJN9", "url": "https://alphafold.ebi.ac.uk/entry/F4JJN9", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G27590", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G27590", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00371", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00371", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "828869", "url": "https://www.ncbi.nlm.nih.gov/gene/828869", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G27590", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G27590", "database": "KEGG 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"F4JJN9-1", "url": "https://www.uniprot.org/uniprotkb/F4JJN9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JJP0", "url": "https://www.uniprot.org/uniprotkb/F4JJP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JJP0-1", "url": "https://www.uniprot.org/uniprotkb/F4JJP0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDLQIVPVYNKVEAQYVEMMVPLYSYGCEKKVKRALSHLKGIYSVKVDYYNQKVTVWGICNKLDVLAMVKKKRKEARFWNVEEEENNNPESVDDCIVVKEDTIIKTSFDTDKSSAFYTYSTTPPRFSIRPPMSLIRTSSFTWKAVKKFNGHRIVRKIFLGTHMLSRKKKTESFEKNKVITLYLPVHCTELRRSSTIFSDKALVPLSETEVTDTKTIIRTRSGRSTKTRSVPSHPIPIAVAESANPESDNDSVATTTEVRTQRRPRQSVGESSRPKQNTLNKKKEEEENDSTQVIDEEEEENARRKKRCIHNLRKAIQNLKECVDILEGFVF", "length": 332, "header": "tr|F4JJN9-1|F4JJN9_ARATH Isoform 1 of Heavy metal transport/detoxification superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JJN9-1" }, "isoforms": [ { "isoform_ac": "F4JJN9-1", "url": "https://www.uniprot.org/uniprotkb/F4JJN9/entry", "sequence": { "sequence": "MGDLQIVPVYNKVEAQYVEMMVPLYSYGCEKKVKRALSHLKGIYSVKVDYYNQKVTVWGICNKLDVLAMVKKKRKEARFWNVEEEENNNPESVDDCIVVKEDTIIKTSFDTDKSSAFYTYSTTPPRFSIRPPMSLIRTSSFTWKAVKKFNGHRIVRKIFLGTHMLSRKKKTESFEKNKVITLYLPVHCTELRRSSTIFSDKALVPLSETEVTDTKTIIRTRSGRSTKTRSVPSHPIPIAVAESANPESDNDSVATTTEVRTQRRPRQSVGESSRPKQNTLNKKKEEEENDSTQVIDEEEEENARRKKRCIHNLRKAIQNLKECVDILEGFVF", "length": 332, "header": "tr|F4JJN9-1|F4JJN9_ARATH Isoform 1 of Heavy metal transport/detoxification superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JJN9-1" }, "locus": { "chromosome": "4", "start_pos": 13771185, "end_pos": 13772594, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G27590.2", "url": "https://www.ensemblgenomes.org/id/AT4G27590.2" }, { "database": "Ensembl Peptide", "id": "AT4G27590.2", "url": "https://www.ensemblgenomes.org/id/AT4G27590.2" } ] } }, { "isoform_ac": "F4JJP0-1", "url": "https://www.uniprot.org/uniprotkb/F4JJP0/entry", "sequence": { "sequence": "MGDLQIVPVYNKVEAQYVEMMVPLYSYGCEKKVKRALSHLKGIYSVKVDYYNQKVTVWGICNKLDVLAMVKKKRKEARFWNVEEEENNNPESVDDCIVVKEDTIIKTSFDTDKSSAFYTYSTTPPRFSIRPPMSLIRTSSFTWKAVKKVFTRSLSF", "length": 156, "header": "tr|F4JJP0-1|F4JJP0_ARATH Computationally mapped isoform of Heavy metal transport/detoxification superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JJN9-1" }, "locus": { "chromosome": "4", "start_pos": 13771089, "end_pos": 13771885, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G27590.1", "url": "https://www.ensemblgenomes.org/id/AT4G27590.1" }, { "database": "Ensembl Peptide", "id": "AT4G27590.1", "url": "https://www.ensemblgenomes.org/id/AT4G27590.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JJN9", "url": "https://www.uniprot.org/uniprotkb/F4JJN9" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JJN9", "url": "https://www.uniprot.org/uniprotkb/F4JJN9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G27590", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G27590", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JJN9", "url": "https://www.uniprot.org/uniprotkb/F4JJN9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F4JJN9", "url": "https://www.uniprot.org/uniprotkb/F4JJN9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JJN9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 332, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JJN9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JJN9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JJN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JJN9" }, { "id": "PS50846", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50846" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HMA", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 82, "start_aa": "Ala", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 250, "end_pos": 252 }, { "start_pos": 289, "end_pos": 291 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JJU7-1", "uniprot_ac": "F4JJU7", "uniprot_id": "F4JJU7_ARATH", "mass": { "chemical_mass": 64870.0, "monoisotopic_mass": 64870.0 }, "refseq": {}, "gene_names": [ { "name": "F17I5.20", "type": "synonym", "evidence": [ { "id": "F4JJU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JJU7" } ] }, { "name": "F17I5_20", "type": "synonym", "evidence": [ { "id": "F4JJU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JJU7" } ] } ], "protein_names": [ { "name": "Glycosyl hydrolase family 10 protein", "type": "synonym", "evidence": [ { "id": "F4JJU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JJU7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JJU7", "url": "https://www.uniprot.org/uniprotkb/F4JJU7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JJU7", "locus": {} } ], "crossref": [ { "id": "F4JJU7", "url": "https://alphafold.ebi.ac.uk/entry/F4JJU7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G33830", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G33830", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "829525", "url": "https://www.ncbi.nlm.nih.gov/gene/829525", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G33830", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G33830", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NIFAMAH", "url": "https://omabrowser.org/oma/group/NIFAMAH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31490", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31490", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31490:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31490:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00331", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00331", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G33830", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G33830", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JJU7", "url": "https://www.uniprot.org/uniprotkb/F4JJU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JJU7-1", "url": "https://www.uniprot.org/uniprotkb/F4JJU7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLLLLLPLAFCCLSLSRCEEILVPYDYSATIECLEIPYKPQYNGGIIVNPDMQNGSQGWSQFENAKVNFREFGGNKFVVATQRNQSSDSVSQKVYLEKGILYTFSAWLQVSTGKAPVSAVFKKNGEYKHAGSVVAESKCWSMLKGGLTVDESGPAELFVESEDTTVEIWVDSVSLQPFTQDEWNAHQEQSIDNSRKGPVRIRVVNNKGEKIPNASITIEQKRLGFPFGSAVAQNILGNQAYQNWFTQRFTVTTFENEMKWYSTESVRGIENYTVADAMLRFFNQHGIAVRGHNVVWDHPKYQSKWVTSLSRNDLYNAVKRRVFSVVSRYKGQLAGWDVVNENLHHSFFESKFGPNASNNIFAMAHAIDPSTTMFMNEFYTLEDPTDLKASPAKYLEKLRELQSIRVRGNIPLGIGLESHFSTPNIPYMRSALDTLGATGLPIWLTEIDVKAPSSDQAKYFEQVLREGHAHPHVKGMVTWTAYAPNCYHMCLTDGNFKNLPTGDVVDKLIREWGGLRSQTTEVTDADGFFEASLFHGDYDLNISHPLTNSSVSHNFTLTSDDSSLHTQPSTFVFRV", "length": 576, "header": "tr|F4JJU7-1|F4JJU7_ARATH Isoform 1 of Glycosyl hydrolase family 10 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JJU7-1" }, "isoforms": [ { "isoform_ac": "F4JJU7-1", "url": "https://www.uniprot.org/uniprotkb/F4JJU7/entry", "sequence": { "sequence": "MKLLLLLPLAFCCLSLSRCEEILVPYDYSATIECLEIPYKPQYNGGIIVNPDMQNGSQGWSQFENAKVNFREFGGNKFVVATQRNQSSDSVSQKVYLEKGILYTFSAWLQVSTGKAPVSAVFKKNGEYKHAGSVVAESKCWSMLKGGLTVDESGPAELFVESEDTTVEIWVDSVSLQPFTQDEWNAHQEQSIDNSRKGPVRIRVVNNKGEKIPNASITIEQKRLGFPFGSAVAQNILGNQAYQNWFTQRFTVTTFENEMKWYSTESVRGIENYTVADAMLRFFNQHGIAVRGHNVVWDHPKYQSKWVTSLSRNDLYNAVKRRVFSVVSRYKGQLAGWDVVNENLHHSFFESKFGPNASNNIFAMAHAIDPSTTMFMNEFYTLEDPTDLKASPAKYLEKLRELQSIRVRGNIPLGIGLESHFSTPNIPYMRSALDTLGATGLPIWLTEIDVKAPSSDQAKYFEQVLREGHAHPHVKGMVTWTAYAPNCYHMCLTDGNFKNLPTGDVVDKLIREWGGLRSQTTEVTDADGFFEASLFHGDYDLNISHPLTNSSVSHNFTLTSDDSSLHTQPSTFVFRV", "length": 576, "header": "tr|F4JJU7-1|F4JJU7_ARATH Isoform 1 of Glycosyl hydrolase family 10 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JJU7-1" }, "locus": { "chromosome": "4", "start_pos": 16220189, "end_pos": 16222681, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G33830.1", "url": "https://www.ensemblgenomes.org/id/AT4G33830.1" }, { "database": "Ensembl Peptide", "id": "AT4G33830.1", "url": "https://www.ensemblgenomes.org/id/AT4G33830.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 316, "end_pos": 316, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JJU7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JJU7" } ], "site_lbl": "Tyr316" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber 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A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JJU7", "url": "https://www.uniprot.org/uniprotkb/F4JJU7" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JJU7", "url": "https://www.uniprot.org/uniprotkb/F4JJU7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G33830", "name": "", "url": 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"reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JJU9", "locus": {} } ], "crossref": [ { "id": "F4JJU9", "url": "https://alphafold.ebi.ac.uk/entry/F4JJU9", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G33860", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G33860", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "829528", "url": "https://www.ncbi.nlm.nih.gov/gene/829528", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ 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"id": "IPR044974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G09430", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G09430", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WKGALTQ", "url": "https://omabrowser.org/oma/group/WKGALTQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017:SF501", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017:SF501", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G09430", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G09430", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JK03", "url": "https://www.uniprot.org/uniprotkb/F4JK03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JK03-1", "url": "https://www.uniprot.org/uniprotkb/F4JK03-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSSTSSPTRVKEYDVFLSFRGADTRNNIVSYLHKALVDVGIRTFKDDKELEEGDIISEKLVNAIQTSWFAVVVLSEKYVTSSWCLEELRHIMELSIQDDIIVVPIFYKVEPSDVRYQKNSFEVKLQHYRDPEKILKWKGALTQVGNMSGKHFQTCSDEATNIAEIVSKISNRLRKMKPTDLINLVGMDAHMEKMQLLLDKEPKSEVRMIGILGMGGIGKTAIANYLYNQFSHEYWAHCFIEDAWNTNDPTHLQRKLLSHICNDENAKLFTREAGAMKIKGILKHKKFFLVIDGVNKAEQVHALAKERSWFGPGSLIIITTRDRGLLNSCGVNNVYEVKCLDSKDALQVFEKFAFGGRNPPFHGSERLFTRASQLAHGLPYALVAFASHLSEQTTIEGWEDELFRLEDYPQKNVEEILRASYDDLDYYEQSVFLQVACLFNGSFLWLIRAFLGKLGSRINSLRAKSLLDISNDGRLIMHFLVEQIGKEIVRQQSNCIPSEQKFLWKPEEIYDVLARNIGTSKIHGVSLEMCDLSDTLRIGSSAGQCVISHFSSF", "length": 555, "header": "tr|F4JK03-1|F4JK03_ARATH Isoform 1 of Disease resistance protein (TIR-NBS-LRR class) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JK03-1" }, "isoforms": [ { "isoform_ac": "F4JK03-1", "url": "https://www.uniprot.org/uniprotkb/F4JK03/entry", "sequence": { "sequence": "MASSSTSSPTRVKEYDVFLSFRGADTRNNIVSYLHKALVDVGIRTFKDDKELEEGDIISEKLVNAIQTSWFAVVVLSEKYVTSSWCLEELRHIMELSIQDDIIVVPIFYKVEPSDVRYQKNSFEVKLQHYRDPEKILKWKGALTQVGNMSGKHFQTCSDEATNIAEIVSKISNRLRKMKPTDLINLVGMDAHMEKMQLLLDKEPKSEVRMIGILGMGGIGKTAIANYLYNQFSHEYWAHCFIEDAWNTNDPTHLQRKLLSHICNDENAKLFTREAGAMKIKGILKHKKFFLVIDGVNKAEQVHALAKERSWFGPGSLIIITTRDRGLLNSCGVNNVYEVKCLDSKDALQVFEKFAFGGRNPPFHGSERLFTRASQLAHGLPYALVAFASHLSEQTTIEGWEDELFRLEDYPQKNVEEILRASYDDLDYYEQSVFLQVACLFNGSFLWLIRAFLGKLGSRINSLRAKSLLDISNDGRLIMHFLVEQIGKEIVRQQSNCIPSEQKFLWKPEEIYDVLARNIGTSKIHGVSLEMCDLSDTLRIGSSAGQCVISHFSSF", "length": 555, "header": "tr|F4JK03-1|F4JK03_ARATH Isoform 1 of Disease resistance protein (TIR-NBS-LRR class) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JK03-1" }, "locus": { "chromosome": "4", "start_pos": 5970908, "end_pos": 5973113, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G09430.1", "url": "https://www.ensemblgenomes.org/id/AT4G09430.1" }, { "database": "Ensembl Peptide", "id": "AT4G09430.1", "url": "https://www.ensemblgenomes.org/id/AT4G09430.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 68, "end_pos": 68, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JK03", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JK03" } ], "site_lbl": "Thr68" }, { "start_pos": 69, "end_pos": 69, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JK03", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JK03" } ], "site_lbl": "Ser69" }, { "start_pos": 77, "end_pos": 77, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JK03", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JK03" } ], "site_lbl": "Ser77" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JK03", "url": "https://www.uniprot.org/uniprotkb/F4JK03" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JK03", "url": "https://www.uniprot.org/uniprotkb/F4JK03" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G09430", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G09430", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "F4JK03", "url": "https://www.uniprot.org/uniprotkb/F4JK03" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F4JK03", "url": "https://www.uniprot.org/uniprotkb/F4JK03" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "F4JK03", "url": "https://www.uniprot.org/uniprotkb/F4JK03" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JK03", "url": "https://www.uniprot.org/uniprotkb/F4JK03" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JK03-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 555, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JK03-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JK03" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JK03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JK03" }, { "id": "PS50104", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50104" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TIR", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 179, "start_aa": "Lys", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 68, 69, 77 ], "sequon_annotation_sites": [ { "start_pos": 148, "end_pos": 150 }, { "start_pos": 442, "end_pos": 444 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JK69-1", "uniprot_ac": "F4JK69", "uniprot_id": "F4JK69_ARATH", "mass": { "chemical_mass": 28244.0, "monoisotopic_mass": 28244.0 }, "refseq": { "ac": "NP_193300", "name": "kinase-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193300" }, "gene_names": [ { "name": "DL3865W", "type": "recommended", "evidence": [ { "id": "F4JK69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JK69" } ] }, { "name": "DL3865W", "type": "synonym", "evidence": [ { "id": "NP_193300", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193300" } ] }, { "name": "FCAALL.351", "type": "synonym", "evidence": [ { "id": "NP_193300", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193300" }, { "id": "F4JK69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JK69" } ] } ], "protein_names": [ { "name": "Kinase-like protein", "type": "synonym", "evidence": [ { "id": "F4JK69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JK69/entry#names_and_taxonomy" } ] }, { "name": "kinase-like protein", "type": "synonym", "evidence": [ { "id": "NP_193300", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193300" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JK69", "url": "https://www.uniprot.org/uniprotkb/F4JK69" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DL3865W", "url": "https://www.uniprot.org/uniprotkb/F4JK69", "locus": {} } ], "crossref": [ { "id": "F4JK69", "url": "https://alphafold.ebi.ac.uk/entry/F4JK69", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G15650", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G15650", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827242", "url": "https://www.ncbi.nlm.nih.gov/gene/827242", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G15650", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G15650", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QNDGMND", "url": "https://omabrowser.org/oma/group/QNDGMND/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "NP_193300", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193300", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G15650", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G15650", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JK69", "url": "https://www.uniprot.org/uniprotkb/F4JK69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JK69-1", "url": "https://www.uniprot.org/uniprotkb/F4JK69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCGKSKHDVVTGNTTRIKKPSEAESVKGKDSEAIKRQESCRCQETNDVSAVVPGDQPETTVENNSKKPEEKEDGGDCSEEMAVDNANGDKQPEEKETAASFPPVTAVEAIVPENIVTEETVNDVNESVSPVEEQKEKIDIDTVVEEKSVEDEKDGDVDTEIASSEVEEPIPEVHTPVTTELEAQEIPTTETDEIAATENDDIAATENDDIAATENDDIAATDNDDITARENDEIPVLKDEDKVDVVEENSANITKEVESA", "length": 261, "header": "tr|F4JK69-1|F4JK69_ARATH Isoform 1 of Kinase-like protein OS=Arabidopsis thaliana OX=3702 GN=DL3865W PE=1 SV=1 CANONICAL=F4JK69-1" }, "isoforms": [ { "isoform_ac": "F4JK69-1", "url": "https://www.uniprot.org/uniprotkb/F4JK69/entry", "sequence": { "sequence": "MGCGKSKHDVVTGNTTRIKKPSEAESVKGKDSEAIKRQESCRCQETNDVSAVVPGDQPETTVENNSKKPEEKEDGGDCSEEMAVDNANGDKQPEEKETAASFPPVTAVEAIVPENIVTEETVNDVNESVSPVEEQKEKIDIDTVVEEKSVEDEKDGDVDTEIASSEVEEPIPEVHTPVTTELEAQEIPTTETDEIAATENDDIAATENDDIAATENDDIAATDNDDITARENDEIPVLKDEDKVDVVEENSANITKEVESA", "length": 261, "header": "tr|F4JK69-1|F4JK69_ARATH Isoform 1 of Kinase-like protein OS=Arabidopsis thaliana OX=3702 GN=DL3865W PE=1 SV=1 CANONICAL=F4JK69-1" }, "locus": { "chromosome": "4", "start_pos": 8922389, "end_pos": 8923941, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15650.1", "url": "https://www.ensemblgenomes.org/id/AT4G15650.1" }, { "database": "Ensembl Peptide", "id": "AT4G15650.1", "url": "https://www.ensemblgenomes.org/id/AT4G15650.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JK69", "url": "https://www.uniprot.org/uniprotkb/F4JK69" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JK69", "url": "https://www.uniprot.org/uniprotkb/F4JK69" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G15650", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G15650", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JK69", "url": "https://www.uniprot.org/uniprotkb/F4JK69" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" }, { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" }, { "start_pos": 253, "end_pos": 255, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JK69-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 261, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JK69-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JK69" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 }, { "start_pos": 14, "end_pos": 16 }, { "start_pos": 253, "end_pos": 255 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JK75-1", "uniprot_ac": "F4JK75", "uniprot_id": "F4JK75_ARATH", "mass": { "chemical_mass": 20405.0, "monoisotopic_mass": 20405.0 }, "refseq": { "ac": "NP_001319953", "name": "cystatin-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319953" }, "gene_names": [ { "name": "DL3895W", "type": "recommended", "evidence": [ { "id": "F4JK75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JK75" } ] }, { "name": "DL3895W", "type": "synonym", "evidence": [ { "id": "NP_001319953", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319953" } ] }, { "name": "FCAALL.366", "type": "synonym", "evidence": [ { "id": "NP_001319953", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319953" }, { "id": "F4JK75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JK75" } ] } ], "protein_names": [ { "name": "Cystatin-like protein", "type": "synonym", "evidence": [ { "id": "F4JK75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JK75/entry#names_and_taxonomy" } ] }, { "name": "cystatin-like protein", "type": "synonym", "evidence": [ { "id": "NP_001319953", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319953" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JK75", "url": "https://www.uniprot.org/uniprotkb/F4JK75" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DL3895W", "url": "https://www.uniprot.org/uniprotkb/F4JK75", "locus": {} } ], "crossref": [ { "id": "F4JK75", "url": "https://alphafold.ebi.ac.uk/entry/F4JK75", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G15710", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G15710", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827248", "url": "https://www.ncbi.nlm.nih.gov/gene/827248", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006525", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006525", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G15710", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G15710", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YITLWAR", "url": "https://omabrowser.org/oma/group/YITLWAR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31228:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31228:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001319953", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319953", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G15710", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G15710", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JK75", "url": "https://www.uniprot.org/uniprotkb/F4JK75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JK75-1", "url": "https://www.uniprot.org/uniprotkb/F4JK75-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MACEVDTDLSKAGDSTGFNPPLPKKPKINAEKTDLDAMVLPGLCPAGDRMLRYGKLSDPEYVRQRQVFDDQFEDSEGFDVEWDSFDYKFFAMKFEWAGEGDLDYTRSNLELRTLLIDAAMRDHDDDYDTKLEFVDYVSANVMPCKGYMFYITFWAKDLSSPNPEPKLYQAKMRKFF", "length": 176, "header": "tr|F4JK75-1|F4JK75_ARATH Isoform 1 of Cystatin-like protein OS=Arabidopsis thaliana OX=3702 GN=DL3895W PE=4 SV=1 CANONICAL=F4JK75-1" }, "isoforms": [ { "isoform_ac": "F4JK75-1", "url": "https://www.uniprot.org/uniprotkb/F4JK75/entry", "sequence": { "sequence": "MACEVDTDLSKAGDSTGFNPPLPKKPKINAEKTDLDAMVLPGLCPAGDRMLRYGKLSDPEYVRQRQVFDDQFEDSEGFDVEWDSFDYKFFAMKFEWAGEGDLDYTRSNLELRTLLIDAAMRDHDDDYDTKLEFVDYVSANVMPCKGYMFYITFWAKDLSSPNPEPKLYQAKMRKFF", "length": 176, "header": "tr|F4JK75-1|F4JK75_ARATH Isoform 1 of Cystatin-like protein OS=Arabidopsis thaliana OX=3702 GN=DL3895W PE=4 SV=1 CANONICAL=F4JK75-1" }, "locus": { "chromosome": "4", "start_pos": 8939177, "end_pos": 8941406, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15710.1", "url": "https://www.ensemblgenomes.org/id/AT4G15710.1" }, { "database": "Ensembl Peptide", "id": "AT4G15710.1", "url": "https://www.ensemblgenomes.org/id/AT4G15710.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, 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Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JKD9", "url": "https://www.uniprot.org/uniprotkb/F4JKD9" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference 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Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JKV3", "url": "https://www.uniprot.org/uniprotkb/F4JKV3" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JKV3", "url": "https://www.uniprot.org/uniprotkb/F4JKV3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G09965", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G09965", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JKV3", "url": "https://www.uniprot.org/uniprotkb/F4JKV3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], 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containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DL3945C PE=1 SV=1 CANONICAL=F4JKW7-1" }, "locus": { "chromosome": "4", "start_pos": 8989162, "end_pos": 8992756, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15810.1", "url": "https://www.ensemblgenomes.org/id/AT4G15810.1" }, { "database": "Ensembl Peptide", "id": "AT4G15810.1", "url": "https://www.ensemblgenomes.org/id/AT4G15810.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, 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"title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JKY6-1", "uniprot_ac": "F4JKY6", "uniprot_id": "F4JKY6_ARATH", "mass": { "chemical_mass": 43060.0, "monoisotopic_mass": 43060.0 }, "refseq": { "ac": "NP_193331", "name": "alpha/beta-Hydrolases superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193331" }, "gene_names": [ { "name": "DL4016C", "type": "recommended", "evidence": [ { "id": "F4JKY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKY6" } ] }, { "name": "DL4016C", "type": "synonym", "evidence": [ { "id": "NP_193331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193331" } ] }, { "name": "FCAALL.242", "type": "synonym", "evidence": [ { "id": "NP_193331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193331" }, { "id": "F4JKY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKY6" } ] } ], "protein_names": [ { "name": "soluble epoxide hydrolase", "type": "recommended", "evidence": [ { "id": "F4JKY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKY6/entry#names_and_taxonomy" } ] }, { "name": "3.3.2.10", "type": "synonym", "evidence": [ { "id": "F4JKY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKY6/entry#names_and_taxonomy" } ] }, { "name": "alpha/beta-Hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_193331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193331" } ] } ], "function": [ { "annotation": "Epoxide hydrolase involved in the biosynthesis of cucurbitacin and mogroside tetracyclic triterpene natural products (e.g. siamenoside I and mogrosides IV, V and VI). Cucurbitacins have cytotoxic properties and exhibit deterrent taste as a defense barrier against herbivores. Mogrosides are nonsugar highly oxygenated compounds used as high-intensity zero-calorie sweeteners; they also possess pharmacological properties such as regulating immunity, lowering blood sugar and lipid levels, protecting the liver, and acting as antioxidants and antitumor agents. Catalyzes the hydrolysis of aromatic epoxide-containing substrates, such as the conversion of 24,25-epoxycucurbitadienol to 24,25-dihydroxycucurbitadienol.", "evidence": [ { "database": "UniProtKB", "id": "F4JKY6", "url": "https://www.uniprot.org/uniprotkb/F4JKY6#function" }, { "database": "UniProtKB", "id": "ARBA00058358", "url": "https://www.uniprot.org/uniprotkb/ARBA00058358#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JKY6", "url": "https://www.uniprot.org/uniprotkb/F4JKY6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DL4016C", "url": "https://www.uniprot.org/uniprotkb/F4JKY6", "locus": {} } ], "crossref": [ { "id": "F4JKY6", "url": "https://alphafold.ebi.ac.uk/entry/F4JKY6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G15960", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G15960", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827279", "url": "https://www.ncbi.nlm.nih.gov/gene/827279", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000639", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000639", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G15960", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G15960", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QMSFMAK", "url": "https://omabrowser.org/oma/group/QMSFMAK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR43329", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43329", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_193331", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193331", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19037", "url": "https://www.rhea-db.org/rhea/19037", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "81855", "url": "https://www.rhea-db.org/rhea/81855", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT4G15960", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G15960", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JKY6", "url": "https://www.uniprot.org/uniprotkb/F4JKY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKY6-1", "url": "https://www.uniprot.org/uniprotkb/F4JKY6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFFLCRKLSLSRFRHHFPLRLRRFLGENPNPTTHFSTLPDNQTKRPEKSRLDGVEHKTLKVNGINMHVAEKPGSGSGEDPIILFLHGFPELWYTWRHQMVALSSLGYRTIAPDLRGYGDTEAPEKVEDYTYLNVDGDVVALIDAVTGGDKAVSVVGHDWGAMIAWQLCQYRPEKVKALVNMSVLFSPRNPVRVPVPTLRHVFGDDYYVCRFQKAGEIETEFKKLGTENVLKEFLTYKTPGPLNLPKDKYFKRSENAASALPLWLTQEDLDYYVTKYENKGFTGPINYYRNIDRNWELTAPWTGAKIRVPVKFIIGDQDLTYNFPGAKEYINGGGFKRDVPLLDETVVLKGLGHFLHEENPDVINQHIHNFFHKFL", "length": 375, "header": "tr|F4JKY6-1|F4JKY6_ARATH Isoform 1 of soluble epoxide hydrolase OS=Arabidopsis thaliana OX=3702 GN=DL4016C PE=1 SV=1 CANONICAL=F4JKY6-1" }, "isoforms": [ { "isoform_ac": "F4JKY6-1", "url": "https://www.uniprot.org/uniprotkb/F4JKY6/entry", "sequence": { "sequence": 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Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, 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"https://www.uniprot.org/uniprotkb/F4JKZ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JKZ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 382, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JKZ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JKZ7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JKZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKZ7" }, { "id": "PS50144", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50144" } ], "ann_type": "Domain_Extent_Annotation", 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"evidence": [ { "id": "F4JKZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKZ9" } ] }, { "name": "DL4070W", "type": "synonym", "evidence": [ { "id": "NP_193341", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193341" } ] }, { "name": "FCAALL.269", "type": "synonym", "evidence": [ { "id": "NP_193341", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193341" }, { "id": "F4JKZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKZ9" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4JKZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKZ9/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_193341", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193341" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], 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"https://www.uniprot.org/uniprotkb/F4JKZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIALSLSVSLTSLPFSFAFSSTPCKSRASPPRSTVSLSSSRRRQDRRRSIEAMSQVMELEDESDFEKLLSSDNRISITGFGSLLSERSARSTFPDLENFRIAKLQGFRRVFAHSAPIFFERGIANPETKEISSLSVEPCEGESLVVTVFEIKSSEIPAFIGRELEFRFLAVVPETLEGKPYTNSAVLCGRYSDEEFFQIRCKGNKGIYFQHYGRFKIDKIWRDDILPCRLYLRHCVLAAKNLGDEAYNNFLDHTFLGDRKTTIREYLSSTGSGIMEEEPPEALKSRYGG", "length": 289, "header": "tr|F4JKZ9-1|F4JKZ9_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=DL4070W PE=1 SV=1 CANONICAL=F4JKZ9-1" }, "isoforms": [ { "isoform_ac": "F4JKZ9-1", "url": "https://www.uniprot.org/uniprotkb/F4JKZ9/entry", "sequence": { "sequence": "MIALSLSVSLTSLPFSFAFSSTPCKSRASPPRSTVSLSSSRRRQDRRRSIEAMSQVMELEDESDFEKLLSSDNRISITGFGSLLSERSARSTFPDLENFRIAKLQGFRRVFAHSAPIFFERGIANPETKEISSLSVEPCEGESLVVTVFEIKSSEIPAFIGRELEFRFLAVVPETLEGKPYTNSAVLCGRYSDEEFFQIRCKGNKGIYFQHYGRFKIDKIWRDDILPCRLYLRHCVLAAKNLGDEAYNNFLDHTFLGDRKTTIREYLSSTGSGIMEEEPPEALKSRYGG", "length": 289, "header": "tr|F4JKZ9-1|F4JKZ9_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=DL4070W PE=1 SV=1 CANONICAL=F4JKZ9-1" }, "locus": { "chromosome": "4", "start_pos": 9094402, "end_pos": 9096353, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16060.1", "url": "https://www.ensemblgenomes.org/id/AT4G16060.1" }, { "database": "Ensembl Peptide", "id": "AT4G16060.1", "url": "https://www.ensemblgenomes.org/id/AT4G16060.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 26, "end_pos": 26, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JKZ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JKZ9" } ], "site_lbl": "Ser26" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JKZ9", "url": "https://www.uniprot.org/uniprotkb/F4JKZ9" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. 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"MSSLLLSLSSKASLRKLPLRCHTLRMFSSSTTNPYLLYRVINYGSSMDDIHVTSNIHYFDPVKEDEVIVRDKVLPMELRKGCLVGMSHGWGVFKAVCDYNEYKAIYVTDYYNPCGSKSVKSIPLHPLGKPIAIQQQAITNAAMTCSPDQSKDFAVAVKCLGPMINFNRPGGTHKDSGSVIFKTPFQYFDQSKVMYSKRDEKFYTPSFGGHFLVFWDSFFGEDMTGSELVELRFCNVPKLTQSEWELLDSCSKTVYLVESPSGQRFLIK", "length": 268, "header": "tr|F4JL03-1|F4JL03_ARATH Isoform 1 of KIB1-4 beta-propeller domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=DL4085W PE=4 SV=1 CANONICAL=F4JL03-1" }, "isoforms": [ { "isoform_ac": "F4JL03-1", "url": "https://www.uniprot.org/uniprotkb/F4JL03/entry", "sequence": { "sequence": "MSSLLLSLSSKASLRKLPLRCHTLRMFSSSTTNPYLLYRVINYGSSMDDIHVTSNIHYFDPVKEDEVIVRDKVLPMELRKGCLVGMSHGWGVFKAVCDYNEYKAIYVTDYYNPCGSKSVKSIPLHPLGKPIAIQQQAITNAAMTCSPDQSKDFAVAVKCLGPMINFNRPGGTHKDSGSVIFKTPFQYFDQSKVMYSKRDEKFYTPSFGGHFLVFWDSFFGEDMTGSELVELRFCNVPKLTQSEWELLDSCSKTVYLVESPSGQRFLIK", "length": 268, "header": "tr|F4JL03-1|F4JL03_ARATH Isoform 1 of KIB1-4 beta-propeller domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=DL4085W PE=4 SV=1 CANONICAL=F4JL03-1" }, "locus": { "chromosome": "4", "start_pos": 9103040, "end_pos": 9103965, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16090.1", "url": "https://www.ensemblgenomes.org/id/AT4G16090.1" }, { "database": "Ensembl Peptide", "id": "AT4G16090.1", "url": "https://www.ensemblgenomes.org/id/AT4G16090.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, 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Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JL03", "url": "https://www.uniprot.org/uniprotkb/F4JL03" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JL03", "url": "https://www.uniprot.org/uniprotkb/F4JL03" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G16090", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16090", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JL03", "url": "https://www.uniprot.org/uniprotkb/F4JL03" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JL03-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 268, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JL03-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JL03" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JL03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JL03" }, { "id": "PF03478", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03478" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KIB1-4 beta-propeller", "eco_id": "ECO_0000259", "start_pos": 74, "end_pos": 267, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, 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"MDHSSWTLRGYSIESSSVEDLLGMTKLRTLTVHSLDGCTLETLSASLCESRELGQLSLYEVMHDRHNEGKLVLDLIQLKFLTVGMHMPRLPDQHRFPPNLTNICLRYCCMEDDPMPILEKLLHLKLVELSYGAFTGKKMELPDEVIYITSLKQLTIGGRNSEWVWKLSERGQDHYKVHHIPCVQFIY", "length": 187, "header": "tr|F4JL04-1|F4JL04_ARATH Isoform 1 of RNI-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JL04-1" }, "locus": { "chromosome": "4", "start_pos": 9104547, "end_pos": 9105237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16095.1", "url": "https://www.ensemblgenomes.org/id/AT4G16095.1" }, { "database": "Ensembl Peptide", "id": "AT4G16095.1", "url": "https://www.ensemblgenomes.org/id/AT4G16095.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JL04", "url": "https://www.uniprot.org/uniprotkb/F4JL04" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JL04", "url": "https://www.uniprot.org/uniprotkb/F4JL04" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G16095", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16095", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JL04-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 187, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JL04-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JL04" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JLB7-1", "uniprot_ac": "F4JLB7", "uniprot_id": "F4JLB7_ARATH", "mass": { "chemical_mass": 49045.0, "monoisotopic_mass": 49045.0 }, "refseq": { "ac": "NP_194585", "name": "ROP-interactive CRIB motif-containing protein 7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194585" }, "gene_names": [ { "name": "RIC7", "type": "recommended", "evidence": [ { "id": "F4JLB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JLB7" } ] }, { "name": "RIC7", "type": "synonym", "evidence": [ { "id": "NP_194585", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194585" } ] }, { "name": "ROP-interactive CRIB motif-containing protein 7", "type": "synonym", "evidence": [ { "id": "NP_194585", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194585" } ] } ], "protein_names": [ { "name": "ROP-interactive CRIB motif-containing protein 7", "type": "synonym", "evidence": [ { "id": "NP_194585", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194585" }, { "id": "F4JLB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JLB7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JLB7", "url": "https://www.uniprot.org/uniprotkb/F4JLB7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "RIC7", "url": "https://www.uniprot.org/uniprotkb/F4JLB7", "locus": { "chromosome": "CP002687.1", "start_pos": 14116015, "end_pos": 14117367, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "AT4G28560", "url": "https://www.ensemblgenomes.org/id/AT4G28560" } ] } } ], "crossref": [ { "id": "F4JLB7", "url": "https://alphafold.ebi.ac.uk/entry/F4JLB7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G28560", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G28560", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828974", "url": "https://www.ncbi.nlm.nih.gov/gene/828974", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G28560", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G28560", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "INSAIPW", "url": "https://omabrowser.org/oma/group/INSAIPW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4JLB7", "url": "https://www.orthodb.org/?gene=F4JLB7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48004", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48004", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48004:SF58", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48004:SF58", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_194585", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194585", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G28560", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G28560", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JLB7", "url": "https://www.uniprot.org/uniprotkb/F4JLB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JLB7-1", "url": "https://www.uniprot.org/uniprotkb/F4JLB7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASFTNLSLLLLFLFTATLITSQQSDDDENASPQLALDPSEQEAVYRVLDSVNSAISWRTIFPDDICASPPDGVVCDNLYASQNGVATSVHVTEFHLGYLSDYTQNPPCSSNATLDPLLFTAFKHLRKLFFYKCFTDARASLPLTVPEDFGSVLEELVFIENPSLVGEIGAMIGNFTKLRRLVLTGNGFHGSIPGQIGDLVSLEEITLSRNSLTGGFPANATSRLKNLKVLDFSHNFINGNAPDSIGDLTELLKLDLSFNEFTGEVPSGVGNLKKLVFLDLSYNRFGNFGVPLFLAEMSSLREVHLSGNKLGGRIPAIWKNLEGISGIGFSRMGLEGNIPASMGSSLKNLCFLALDNNNLDGQIPEEFGFLDSAREINLENNNLTGKAPFSDSFRDRIGKKLKLSGNVNLQVKNSDPHLAGRALYSSARKVLPLIYFPATLLALYISITQ", "length": 450, "header": "tr|F4JLB7-1|F4JLB7_ARATH Isoform 1 of ROP-interactive CRIB motif-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=RIC7 PE=1 SV=1 CANONICAL=F4JLB7-1" }, "isoforms": [ { "isoform_ac": "F4JLB7-1", "url": "https://www.uniprot.org/uniprotkb/F4JLB7/entry", "sequence": { "sequence": "MASFTNLSLLLLFLFTATLITSQQSDDDENASPQLALDPSEQEAVYRVLDSVNSAISWRTIFPDDICASPPDGVVCDNLYASQNGVATSVHVTEFHLGYLSDYTQNPPCSSNATLDPLLFTAFKHLRKLFFYKCFTDARASLPLTVPEDFGSVLEELVFIENPSLVGEIGAMIGNFTKLRRLVLTGNGFHGSIPGQIGDLVSLEEITLSRNSLTGGFPANATSRLKNLKVLDFSHNFINGNAPDSIGDLTELLKLDLSFNEFTGEVPSGVGNLKKLVFLDLSYNRFGNFGVPLFLAEMSSLREVHLSGNKLGGRIPAIWKNLEGISGIGFSRMGLEGNIPASMGSSLKNLCFLALDNNNLDGQIPEEFGFLDSAREINLENNNLTGKAPFSDSFRDRIGKKLKLSGNVNLQVKNSDPHLAGRALYSSARKVLPLIYFPATLLALYISITQ", "length": 450, "header": "tr|F4JLB7-1|F4JLB7_ARATH Isoform 1 of ROP-interactive CRIB motif-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=RIC7 PE=1 SV=1 CANONICAL=F4JLB7-1" }, "locus": { "chromosome": "4", "start_pos": 14116015, "end_pos": 14117367, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G28560.1", "url": "https://www.ensemblgenomes.org/id/AT4G28560.1" }, { "database": "Ensembl Peptide", "id": "AT4G28560.1", "url": "https://www.ensemblgenomes.org/id/AT4G28560.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31589", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31589:SF223", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31589:SF223", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03080", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03080", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14365", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14365", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_192760", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192760", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G10220", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G10220", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JLL4", "url": "https://www.uniprot.org/uniprotkb/F4JLL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JLL4-1", "url": "https://www.uniprot.org/uniprotkb/F4JLL4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKMKLGCALPMTCMILACYIICGSLLMSHCHGVIKEAKTLKSNEDLEIEHKLKLINKPAFKIVKTINGERYGCVDFYKQPGLDHSSMKNHTFHHKMRMSYSEGSKMKRKTHRNTTFGHFWENGVGCPIGTVPIPRVTKDALLRMKSFDSDNSNPQSSWSKTYKPASSIDDHHFAVVRTTKGTRSYNGASMNINTFTPSVGPMQFSASRMHFQIGNEFIQVGWIVHPQLYHDFNSRIFVFTKSGGNACYNLFCPDGSGMILVRQDLTPGLLAEQKSIDFAIMKDKINGNWWLLMGTSWEEVGFWPSSRFKESSGTMVEWGGEVYSPSPPNPPMGNSHYPKGSPKVDSYVRLITTVDENYNTDKTVKNTERYSDSCYKVRDATETFWSHVGHLIIYGGPGCK", "length": 400, "header": "tr|F4JLL4-1|F4JLL4_ARATH Isoform 1 of NEP-interacting protein, putative (DUF239) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JLL4-1" }, "isoforms": [ { "isoform_ac": "F4JLL4-1", "url": "https://www.uniprot.org/uniprotkb/F4JLL4/entry", "sequence": { "sequence": "MKMKLGCALPMTCMILACYIICGSLLMSHCHGVIKEAKTLKSNEDLEIEHKLKLINKPAFKIVKTINGERYGCVDFYKQPGLDHSSMKNHTFHHKMRMSYSEGSKMKRKTHRNTTFGHFWENGVGCPIGTVPIPRVTKDALLRMKSFDSDNSNPQSSWSKTYKPASSIDDHHFAVVRTTKGTRSYNGASMNINTFTPSVGPMQFSASRMHFQIGNEFIQVGWIVHPQLYHDFNSRIFVFTKSGGNACYNLFCPDGSGMILVRQDLTPGLLAEQKSIDFAIMKDKINGNWWLLMGTSWEEVGFWPSSRFKESSGTMVEWGGEVYSPSPPNPPMGNSHYPKGSPKVDSYVRLITTVDENYNTDKTVKNTERYSDSCYKVRDATETFWSHVGHLIIYGGPGCK", "length": 400, "header": "tr|F4JLL4-1|F4JLL4_ARATH Isoform 1 of NEP-interacting protein, putative (DUF239) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JLL4-1" }, "locus": { "chromosome": "4", "start_pos": 6362189, "end_pos": 6365079, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G10220.1", "url": "https://www.ensemblgenomes.org/id/AT4G10220.1" }, { "database": "Ensembl Peptide", "id": "AT4G10220.1", "url": "https://www.ensemblgenomes.org/id/AT4G10220.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JLL4", "url": "https://www.uniprot.org/uniprotkb/F4JLL4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JLL4", "url": "https://www.uniprot.org/uniprotkb/F4JLL4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G10220", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G10220", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4JLL4", "url": "https://www.uniprot.org/uniprotkb/F4JLL4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JLL4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 400, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JLL4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JLL4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JLL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JLL4" }, { "id": "PS52045", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52045" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neprosin PEP catalytic", "eco_id": "ECO_0000259", "start_pos": 166, "end_pos": 400, "start_aa": "Ser", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JLN1-1", "uniprot_ac": "F4JLN1", "uniprot_id": "F4JLN1_ARATH", "mass": { "chemical_mass": 79367.0, "monoisotopic_mass": 79367.0 }, "refseq": { "ac": "NP_192775", "name": "Cysteine/Histidine-rich C1 domain family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192775" }, "gene_names": [ { "name": "F24G24.170", "type": "synonym", "evidence": [ { "id": "NP_192775", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192775" }, { "id": "F4JLN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JLN1" } ] }, { "name": "F24G24_170", "type": "synonym", "evidence": [ { "id": "NP_192775", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192775" }, { "id": "F4JLN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JLN1" } ] } ], "protein_names": [ { "name": "Cysteine/Histidine-rich C1 domain family protein", "type": "synonym", "evidence": [ { "id": "NP_192775", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192775" }, { "id": "F4JLN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JLN1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JLN1", "url": "https://www.uniprot.org/uniprotkb/F4JLN1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JLN1", "locus": {} } ], "crossref": [ { "id": "F4JLN1", "url": "https://alphafold.ebi.ac.uk/entry/F4JLN1", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G10370", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G10370", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "826629", "url": "https://www.ncbi.nlm.nih.gov/gene/826629", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G10370", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G10370", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CAVITEI", "url": "https://omabrowser.org/oma/group/CAVITEI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF153", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF153", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_192775", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192775", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G10370", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G10370", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JLN1", "url": "https://www.uniprot.org/uniprotkb/F4JLN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JLN1-1", "url": "https://www.uniprot.org/uniprotkb/F4JLN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSVGVFHKVEMDENLYFVYKLTQTDYPTSSGEVLAMDSTGDDQPLDQPLFLCPDARIKFHKLKIQREDGDIFDYDFKFHPYISSPHFPSKRSGDQQGESLLDCDEDGICKLPVVPLFWCNNKESDSREFQCGGCRDSMLSASYYACLQCEKKFHKECVESPLEIKHPTHLFHSLRLYYHPAPEFCICCKTEVFMIFYHCLTCNLSMHPVCAMRKVPFFIDHPKSHPHPLTFFPTQASLVCHFCALIKKLDPTYICTKCVFVIHKGCIGFPHVIRISRHTHRISFTSSLPCGKLSCGVCHQQVDNDYGAYSCKKCDAYFVHSKCALQRHVWDGKDLEEVPEEDDMIDDGEPFKRIADGIILHPFHSHNLHLQTTRAYDENTYCRGCALPIYEGQFYSCIESDFILHEHCANAPRMKRHPLHPHPLTLVVATRGPGNEEGTFQCDACHRKGTGFFYEHHTDQENIFMLDIHCASIFEPFQYQGHEHPLFLPSEPNKWGRCQMCTYEYVNLNLNCLECDYILCFHCATLPYKVRYKHDSHFLKICNGKEANDQSYWCEICEGKIEEGTERAFYNTPKKDTSFYKCNACCTTLHQRCLLGIDTYMKPGETVKDYLSSIKYASEGQSKESITDVQILLNSSPTRPICTRCLCRCPFPIFFKGHNTIFCSWDCVEDSAMRSYQRLLYSFLWG", "length": 687, "header": "tr|F4JLN1-1|F4JLN1_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JLN1-1" }, "isoforms": [ { "isoform_ac": "F4JLN1-1", "url": "https://www.uniprot.org/uniprotkb/F4JLN1/entry", "sequence": { "sequence": "MSSVGVFHKVEMDENLYFVYKLTQTDYPTSSGEVLAMDSTGDDQPLDQPLFLCPDARIKFHKLKIQREDGDIFDYDFKFHPYISSPHFPSKRSGDQQGESLLDCDEDGICKLPVVPLFWCNNKESDSREFQCGGCRDSMLSASYYACLQCEKKFHKECVESPLEIKHPTHLFHSLRLYYHPAPEFCICCKTEVFMIFYHCLTCNLSMHPVCAMRKVPFFIDHPKSHPHPLTFFPTQASLVCHFCALIKKLDPTYICTKCVFVIHKGCIGFPHVIRISRHTHRISFTSSLPCGKLSCGVCHQQVDNDYGAYSCKKCDAYFVHSKCALQRHVWDGKDLEEVPEEDDMIDDGEPFKRIADGIILHPFHSHNLHLQTTRAYDENTYCRGCALPIYEGQFYSCIESDFILHEHCANAPRMKRHPLHPHPLTLVVATRGPGNEEGTFQCDACHRKGTGFFYEHHTDQENIFMLDIHCASIFEPFQYQGHEHPLFLPSEPNKWGRCQMCTYEYVNLNLNCLECDYILCFHCATLPYKVRYKHDSHFLKICNGKEANDQSYWCEICEGKIEEGTERAFYNTPKKDTSFYKCNACCTTLHQRCLLGIDTYMKPGETVKDYLSSIKYASEGQSKESITDVQILLNSSPTRPICTRCLCRCPFPIFFKGHNTIFCSWDCVEDSAMRSYQRLLYSFLWG", "length": 687, "header": "tr|F4JLN1-1|F4JLN1_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JLN1-1" }, "locus": { "chromosome": "4", "start_pos": 6423353, "end_pos": 6425678, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G10370.1", "url": "https://www.ensemblgenomes.org/id/AT4G10370.1" }, { "database": "Ensembl Peptide", "id": "AT4G10370.1", "url": "https://www.ensemblgenomes.org/id/AT4G10370.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JLN1", "url": "https://www.uniprot.org/uniprotkb/F4JLN1" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JLN1", "url": "https://www.uniprot.org/uniprotkb/F4JLN1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G10370", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G10370", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JLN1", "url": "https://www.uniprot.org/uniprotkb/F4JLN1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F4JLN1", "url": "https://www.uniprot.org/uniprotkb/F4JLN1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 635, "end_pos": 637, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JLN1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 687, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JLN1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JLN1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JLN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JLN1" }, { "id": "PS50081", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50081" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phorbol-ester/DAG-type", "eco_id": "ECO_0000259", "start_pos": 169, "end_pos": 219, "start_aa": "Thr", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 204, "end_pos": 206 }, { "start_pos": 635, "end_pos": 637 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JLN7-1", "uniprot_ac": "F4JLN7", "uniprot_id": "F4JLN7_ARATH", "mass": { "chemical_mass": 37153.0, "monoisotopic_mass": 37153.0 }, "refseq": { "ac": "NP_192780", "name": "FBD / Leucine Rich Repeat domains containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192780" }, "gene_names": [ { "name": "F7L13.3", "type": "synonym", "evidence": [ { "id": "NP_192780", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192780" }, { "id": "F4JLN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JLN7" } ] } ], "protein_names": [ { "name": "FBD / Leucine Rich Repeat domains containing protein", "type": "synonym", "evidence": [ { "id": "NP_192780", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192780" }, { "id": "F4JLN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JLN7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JLN7", "url": "https://www.uniprot.org/uniprotkb/F4JLN7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JLN7", "locus": {} } ], "crossref": [ { "id": "F4JLN7", "url": "https://alphafold.ebi.ac.uk/entry/F4JLN7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G10420", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G10420", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "826634", "url": "https://www.ncbi.nlm.nih.gov/gene/826634", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G10420", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G10420", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CTINTLR", "url": "https://omabrowser.org/oma/group/CTINTLR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_192780", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192780", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G10420", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G10420", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JLN7", "url": "https://www.uniprot.org/uniprotkb/F4JLN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JLN7-1", "url": "https://www.uniprot.org/uniprotkb/F4JLN7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWVVVVLSRYVRELEIYSSCYQDKQNILPSSLYTCKSLVILKLNGGILMDVPRMVCLPSLKTLVLKGVNYFKQESLQRLLSNCPVLEDLVVNLCHHDNMGKFIVIVPSLQRLSLYIGYKRVLDEFVIDTPSLEYFKLVDRNYDSHPCLIENMPKLTEAYVDVRSTDLQSLIGSITSVKRLIISSKAMFGDGYIFNRLERLTLHVLEENPSNLLSQFLKDSPNLQELEYFSELDDSYENMRMFPWNQPSIVPECLLSSLQKFTWSQYLGRTQDRDIAVYILKNACCLRNATIDSYTCLVPELKMIKELTRSSRASTTCELNFS", "length": 322, "header": "tr|F4JLN7-1|F4JLN7_ARATH Isoform 1 of FBD / Leucine Rich Repeat domains containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JLN7-1" }, "isoforms": [ { "isoform_ac": "F4JLN7-1", "url": "https://www.uniprot.org/uniprotkb/F4JLN7/entry", "sequence": { "sequence": "MWVVVVLSRYVRELEIYSSCYQDKQNILPSSLYTCKSLVILKLNGGILMDVPRMVCLPSLKTLVLKGVNYFKQESLQRLLSNCPVLEDLVVNLCHHDNMGKFIVIVPSLQRLSLYIGYKRVLDEFVIDTPSLEYFKLVDRNYDSHPCLIENMPKLTEAYVDVRSTDLQSLIGSITSVKRLIISSKAMFGDGYIFNRLERLTLHVLEENPSNLLSQFLKDSPNLQELEYFSELDDSYENMRMFPWNQPSIVPECLLSSLQKFTWSQYLGRTQDRDIAVYILKNACCLRNATIDSYTCLVPELKMIKELTRSSRASTTCELNFS", "length": 322, "header": "tr|F4JLN7-1|F4JLN7_ARATH Isoform 1 of FBD / Leucine Rich Repeat domains containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JLN7-1" }, "locus": { "chromosome": "4", "start_pos": 6452811, "end_pos": 6454209, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G10420.1", "url": "https://www.ensemblgenomes.org/id/AT4G10420.1" }, { "database": "Ensembl Peptide", "id": "AT4G10420.1", "url": "https://www.ensemblgenomes.org/id/AT4G10420.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, 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Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=DL4130C PE=1 SV=1 CANONICAL=F4JLQ2-1" }, "locus": { "chromosome": "4", "start_pos": 9165201, "end_pos": 9171064, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16180.2", "url": "https://www.ensemblgenomes.org/id/AT4G16180.2" }, { "database": "Ensembl Peptide", "id": "AT4G16180.2", "url": "https://www.ensemblgenomes.org/id/AT4G16180.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JLQ2", "url": "https://www.uniprot.org/uniprotkb/F4JLQ2" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JLQ2", "url": "https://www.uniprot.org/uniprotkb/F4JLQ2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G16180", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16180", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q556Y0-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": 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"https://www.ebi.ac.uk/interpro/entry/IPR026992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044861", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044861", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050295", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050295", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G16330", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16330", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FACDQAR", "url": "https://omabrowser.org/oma/group/FACDQAR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47991", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47991", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03171", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03171", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001190740", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190740", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G16330", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G16330", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JLS2", "url": "https://www.uniprot.org/uniprotkb/F4JLS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JLS2-1", "url": "https://www.uniprot.org/uniprotkb/F4JLS2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JLS3", "url": "https://www.uniprot.org/uniprotkb/F4JLS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JLS3-1", "url": "https://www.uniprot.org/uniprotkb/F4JLS3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYLMSSFSSSLPPYPFHSKISTIKTSSLGELESKTTSDSHKSGFLLSTSSHRKLDLISHYPGDAASIPTVDLSSSDSAREAIGDACRDWGAFHVINHGVPIHLLDRMRSLGLSFFQDSPMEEKLRYACDSTSAASEGYGSRMLLGAKDDVVLDWRDYFDHHTFPPSRRNPSHWPIHPSDYRQVVGEYGDEMKKLAQMLLGLISESLGLPCSSIEEAVGEIYQNITVTYYPPCPQPELTLGLQSHSDFGAITLLIQDDVEGLQLYKDAQWLTVPPISDAILILIADQTEIITNGRYKSAQHRAVTNANRARLSVATFHDPSKTARIAPVSQLSPPSYKEVVYGQYVSSWYSKGPEGKRNLDALLY", "length": 364, "header": "tr|F4JLS2-1|F4JLS2_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DL4195C PE=1 SV=1 CANONICAL=F4JLS2-1" }, "isoforms": [ { "isoform_ac": "F4JLS2-1", "url": "https://www.uniprot.org/uniprotkb/F4JLS2/entry", "sequence": { "sequence": "MYLMSSFSSSLPPYPFHSKISTIKTSSLGELESKTTSDSHKSGFLLSTSSHRKLDLISHYPGDAASIPTVDLSSSDSAREAIGDACRDWGAFHVINHGVPIHLLDRMRSLGLSFFQDSPMEEKLRYACDSTSAASEGYGSRMLLGAKDDVVLDWRDYFDHHTFPPSRRNPSHWPIHPSDYRQVVGEYGDEMKKLAQMLLGLISESLGLPCSSIEEAVGEIYQNITVTYYPPCPQPELTLGLQSHSDFGAITLLIQDDVEGLQLYKDAQWLTVPPISDAILILIADQTEIITNGRYKSAQHRAVTNANRARLSVATFHDPSKTARIAPVSQLSPPSYKEVVYGQYVSSWYSKGPEGKRNLDALLY", "length": 364, "header": "tr|F4JLS2-1|F4JLS2_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DL4195C PE=1 SV=1 CANONICAL=F4JLS2-1" }, "locus": { "chromosome": "4", "start_pos": 9226122, "end_pos": 9227953, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16330.2", "url": "https://www.ensemblgenomes.org/id/AT4G16330.2" }, { "database": "Ensembl Peptide", "id": "AT4G16330.2", "url": "https://www.ensemblgenomes.org/id/AT4G16330.2" } ] } }, { "isoform_ac": "F4JLS3-1", "url": "https://www.uniprot.org/uniprotkb/F4JLS3/entry", "sequence": { "sequence": "MRSLGLSFFQDSPMEEKLRYACDSTSAASEGYGSRMLLGAKDDVVLDWRDYFDHHTFPPSRRNPSHWPIHPSDYRQVVGEYGDEMKKLAQMLLGLISESLGLPCSSIEEAVGEIYQNITVTYYPPCPQPELTLGLQSHSDFGAITLLIQDDVEGLQLYKDAQWLTVPPISDAILILIADQTEIITNGRYKSAQHRAVTNANRARLSVATFHDPSKTARIAPVSQLSPPSYKEVVYGQYVSSWYSKGPEGKRNLDALLY", "length": 258, "header": "tr|F4JLS3-1|F4JLS3_ARATH Computationally mapped isoform of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DL4195C PE=1 SV=1 CANONICAL=F4JLS2-1" }, "locus": { "chromosome": "4", "start_pos": 9225859, "end_pos": 9228103, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16330.1", "url": "https://www.ensemblgenomes.org/id/AT4G16330.1" }, { "database": "Ensembl Peptide", "id": "AT4G16330.1", "url": "https://www.ensemblgenomes.org/id/AT4G16330.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 109, "end_pos": 109, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JLS2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JLS2" } ], "site_lbl": "Ser109" }, { "start_pos": 332, "end_pos": 332, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JLS2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JLS2" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser332" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JLS2", "url": "https://www.uniprot.org/uniprotkb/F4JLS2" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4JLS2", "url": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0005777", "evidence": [ { "database": "UniProtKB", "id": "F4JLS2", "url": "https://www.uniprot.org/uniprotkb/F4JLS2" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JLS2", "url": "https://www.uniprot.org/uniprotkb/F4JLS2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F4JLS2", "url": "https://www.uniprot.org/uniprotkb/F4JLS2" } ], "pmid": "" }, { "name": "2-oxoglutarate-dependent dioxygenase activity", "id": "GO:0016706", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016706", "evidence": [ { "database": "UniProtKB", "id": "F4JLS2", "url": "https://www.uniprot.org/uniprotkb/F4JLS2" } ], "pmid": "" }, { "name": "oxidoreductase activity", "id": 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"uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_193373", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193373" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JLT3", "url": "https://www.uniprot.org/uniprotkb/F4JLT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DL4230W", "url": "https://www.uniprot.org/uniprotkb/F4JLT3", "locus": {} } ], "crossref": [ { "id": "F4JLT3", "url": "https://alphafold.ebi.ac.uk/entry/F4JLT3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G16400", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G16400", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827334", "url": "https://www.ncbi.nlm.nih.gov/gene/827334", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G16400", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MEYRFHF", "url": "https://omabrowser.org/oma/group/MEYRFHF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34125", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34125", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34125:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34125:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_193373", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193373", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G16400", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G16400", "database": "TAIR", 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"MGNCIHTLLCKHGNKVTDVWSDDEASTEKIKESPQDAAEQKKTGTRRCIKITLTRKQLEQLLQQNPQGVSFQRKWKPSLQTIVEKILWLLICKVTALVMEFLDSTSLHFSPLSLTKFNHKEMEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGGFQQLSEEATGERLMDYVAGRPEDSHKNNLRDDIEATT", "length": 218, "header": "tr|F4JLT3-1|F4JLT3_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=DL4230W PE=4 SV=1 CANONICAL=F4JLT3-1" }, "locus": { "chromosome": "4", "start_pos": 9260564, "end_pos": 9262670, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16400.1", "url": "https://www.ensemblgenomes.org/id/AT4G16400.1" }, { "database": "Ensembl Peptide", "id": "AT4G16400.1", "url": "https://www.ensemblgenomes.org/id/AT4G16400.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, 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M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JLT3", "url": "https://www.uniprot.org/uniprotkb/F4JLT3" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JLT3", "url": "https://www.uniprot.org/uniprotkb/F4JLT3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G16400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16400", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JLT3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 218, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JLT3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JLT3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], 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"MNPKCSKTTLALFFAFTILLIGHAESNSRPRPRTPPPPRTPRTPSPPPPRTPKTPPPPPPRTPRTPPPPPPRTPRTPPPPPPRTPRTPPTAPPRTPPVSPRIPPILPPKTPPTAPPQTPPVSPPKSPPNSPPRAPPLSPPRTPPTSPPRVPPLSPPRTPPTSPPRAPPIPPPRTPSTSPPRAPPLSPPRTPPTSPPRAPPVPPPNTPPTSPPRAPPLSPPRTPPNSPPRTPPTSPPRAPPVPPPRISPTAPPRAPPLSPPRTPPTSPPRTPPLSPPITPPTSPPRAPPLSPPRTPPTSPPRAPPISPPRTPPSSPPRAPPMPPPRTPPTSPPLSPLSPPPRSPPMPPTRTPPVSPPTSPSRTPPVTPPRAPPTAPPQTPPVSPPIVPPNSPPKRPPMSPPITPPTSPPRAPPQSPPITPPISPPRAPPTPPGTPSVPPPPRTPPPPPPSGRCPRNGIPLQICSTILNMFDGFLGLGTAQPCCSLIRGLSDADALACLCESVRAPSRSLPRNIINLFMTCGRSIPPGFTCP", "length": 530, "header": "tr|F4JLV7-1|F4JLV7_ARATH Isoform 1 of Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JLV7-1" }, "isoforms": [ { "isoform_ac": "F4JLV7-1", "url": "https://www.uniprot.org/uniprotkb/F4JLV7/entry", "sequence": { "sequence": 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"PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JMH9", "url": "https://www.uniprot.org/uniprotkb/F4JMH9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana.", "journal": "Nature", "date": "1998", "authors": "Bevan M, Bancroft I, Bent E, Love K, Goodman H, Dean C, Bergkamp R, Dirkse W, Van Staveren M, Stiekema W, Drost L, Ridley P, Hudson S A, Patel K, Murphy G, Piffanelli P, Wedler H, Wedler E, Wambutt R, Weitzenegger T, Pohl T M, Terryn N, Gielen J, Villarroel R, De Clerck 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"MVNIKSPLRLFIEESIKELIRGFRRQRIKWRNAFLLGSIMTTIVVLLHTPTFSVFSDEEETESSSSSPIYLNGSLHLNIHIVSSEAKVENFHTLRTRTPIVQLNASEASEAVLSRKRRKRKKRKKTKDDLILTDPPPAPRHVLSSSERRALSLPPKKALTYAKLEIQRAPEVINDTDLFAPLFRNLSVFKRSYELMELILKVYIYPDGDKPIFHEPHLNGIYASEGWFMKLMESNKQFVTKNPERAHLFYMPYSVKQLQKSIFVPGSHNIKPLSIFLRDYVNMLSIKYPFWNRTHGSDHFLVACHDWGPYTVNEHPELKRNAIKALCNADLSDGIFVPGKDVSLPETSIRNAGRPLRNIGNGNRVSQRPILAFFAGNLHGRVRPKLLKHWRNKDEDMKIYGPLPHNVARKMTYVQHMKSSKYCLCPMGYEVNSPRIVEAIYYECVPVVIADNFMLPFSDVLDWSAFSVVVPEKEIPRLKEILLEIPMRRYLKMQSNVKMVQRHFLWSPKPRKIKPFVKERITILKLLLQPAVYHVWKKRNARIFTSIPSSVSTQCLAIDKTLRNRLLSFPSSDMRSSTTLLHFYFSCIS", "length": 589, "header": "tr|F4JMK5-1|F4JMK5_ARATH Isoform 1 of Exostosin family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JMK5-1" }, "isoforms": [ { "isoform_ac": "F4JMK5-1", "url": "https://www.uniprot.org/uniprotkb/F4JMK5/entry", "sequence": { "sequence": 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"id": "AT4G16745.2", "url": "https://www.ensemblgenomes.org/id/AT4G16745.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JMK5", "url": "https://www.uniprot.org/uniprotkb/F4JMK5" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JMK5", "url": "https://www.uniprot.org/uniprotkb/F4JMK5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G16745", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16745", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F4JMK5", "url": "https://www.uniprot.org/uniprotkb/F4JMK5" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JMK5", "url": "https://www.uniprot.org/uniprotkb/F4JMK5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "glycoprotein biosynthetic process", "id": "GO:0009101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009101", "evidence": [ { "database": "UniProtKB", "id": "F4JMK5", "url": "https://www.uniprot.org/uniprotkb/F4JMK5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "glycosyltransferase activity", "id": "GO:0016757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016757", "evidence": [ { "database": "UniProtKB", "id": "F4JMK5", "url": "https://www.uniprot.org/uniprotkb/F4JMK5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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"PF03016", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Exostosin GT47", "eco_id": "ECO_0000259", "start_pos": 200, "end_pos": 482, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 174, "end_pos": 176 }, { "start_pos": 185, "end_pos": 187 }, { "start_pos": 292, "end_pos": 294 }, { "start_pos": 72, "end_pos": 74 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"MREIQMKYNRDKKNKMGTALKLPIIDLSSPEKLSTSRLIRQACLDHGFFYLTNHGVSEELMEGVLIESKKLFSLPLDEKMVMARHGFRGYSPLYDEKLESSSTSIGDSKEMFTFGSSEGVLGQLYPNKWPLEELLPLWRPTMECYYKNVMDVGKKLFGLVALALNLEENYFEQVGAFNDQAAVVRLLRYSGESNSSGEETCGASAHSDFGMITLLATDGVAGLQVCRDKDKEPKVWEDVAGIKGDFCCQHRRPYGKMD", "length": 258, "header": "tr|F4JML2-1|F4JML2_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DL4410C PE=1 SV=1 CANONICAL=F4JML2-1" }, "isoforms": [ { "isoform_ac": "F4JML2-1", "url": "https://www.uniprot.org/uniprotkb/F4JML2/entry", "sequence": { "sequence": "MREIQMKYNRDKKNKMGTALKLPIIDLSSPEKLSTSRLIRQACLDHGFFYLTNHGVSEELMEGVLIESKKLFSLPLDEKMVMARHGFRGYSPLYDEKLESSSTSIGDSKEMFTFGSSEGVLGQLYPNKWPLEELLPLWRPTMECYYKNVMDVGKKLFGLVALALNLEENYFEQVGAFNDQAAVVRLLRYSGESNSSGEETCGASAHSDFGMITLLATDGVAGLQVCRDKDKEPKVWEDVAGIKGDFCCQHRRPYGKMD", "length": 258, "header": "tr|F4JML2-1|F4JML2_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DL4410C PE=1 SV=1 CANONICAL=F4JML2-1" }, "locus": { "chromosome": "4", "start_pos": 9433955, "end_pos": 9437206, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16770.1", "url": "https://www.ensemblgenomes.org/id/AT4G16770.1" }, { "database": "Ensembl Peptide", "id": "AT4G16770.1", "url": "https://www.ensemblgenomes.org/id/AT4G16770.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JML2", "url": "https://www.uniprot.org/uniprotkb/F4JML2" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JML2", "url": "https://www.uniprot.org/uniprotkb/F4JML2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G16770", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16770", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JML2", "url": "https://www.uniprot.org/uniprotkb/F4JML2" } ], "pmid": "" }, { "name": "peroxisome", "id": "GO:0005777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005777", "evidence": [ { "database": "UniProtKB", "id": "F4JML2", "url": "https://www.uniprot.org/uniprotkb/F4JML2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F4JML2", "url": "https://www.uniprot.org/uniprotkb/F4JML2" } ], "pmid": "" }, { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "F4JML2", "url": "https://www.uniprot.org/uniprotkb/F4JML2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JML2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 258, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JML2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JML2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JML2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JML2" }, { "id": "PF14226", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14226" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Non-haem dioxygenase N-terminal", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 130, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 194, "end_pos": 196 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], 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"phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JML6-1", "uniprot_ac": "F4JML6", "uniprot_id": "F4JML6_ARATH", "mass": { "chemical_mass": 49705.0, "monoisotopic_mass": 49705.0 }, "refseq": { "ac": "NP_001118995", "name": "ATP-dependent caseinolytic protease/crotonase family 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"url": "https://alphafold.ebi.ac.uk/entry/F4JML6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G16807", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G16807", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "6241030", "url": "https://www.ncbi.nlm.nih.gov/gene/6241030", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G16807", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16807", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DIRNWFP", "url": "https://omabrowser.org/oma/group/DIRNWFP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR36368", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36368", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36368:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36368:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001118995", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118995", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G16807", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G16807", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JML6", "url": "https://www.uniprot.org/uniprotkb/F4JML6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JML6-1", "url": "https://www.uniprot.org/uniprotkb/F4JML6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPEFISVQEDGYSDSTSPISEPPDITNWFPSYVYESLPLSSSINEIEIEVDVVNKANPGGVIDESLPSEPPDLGKWFSSYVYESPLLDTSDGLELSVPGESECVKETQTENESPKIEGNDVCPRLLEQELVSSTKVTDFSESQSVLSEPPDLRNWFSSYEYQSPQLSDIQEFGFLYSEKDELIIEESDTEEGISSGIFRKIKSRQETVGLGRLDSNDYKENIATDTAKEVSLDNAVSDQKMEKRSSVRLLNASKKDVKQESSFKQEPLLCELQEEARFSPRVSRYNPKLKSPSKNDTSLHELRPIHIQESISMNSNRQKSPPIEQESYDKENVHGQSNQTGFVTMKKASFREARDQCSLKKPNTEVLVKCSSSKELKTKAGEDNTEEREKKRRVLGEMSNQLSSVAKEIAGKWRCPQKNKRKIVPPLKQLRLDAWIHKV", "length": 439, "header": "tr|F4JML6-1|F4JML6_ARATH Isoform 1 of ATP-dependent caseinolytic protease/crotonase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JML6-1" }, "isoforms": [ { "isoform_ac": "F4JML6-1", "url": "https://www.uniprot.org/uniprotkb/F4JML6/entry", "sequence": { "sequence": "MPEFISVQEDGYSDSTSPISEPPDITNWFPSYVYESLPLSSSINEIEIEVDVVNKANPGGVIDESLPSEPPDLGKWFSSYVYESPLLDTSDGLELSVPGESECVKETQTENESPKIEGNDVCPRLLEQELVSSTKVTDFSESQSVLSEPPDLRNWFSSYEYQSPQLSDIQEFGFLYSEKDELIIEESDTEEGISSGIFRKIKSRQETVGLGRLDSNDYKENIATDTAKEVSLDNAVSDQKMEKRSSVRLLNASKKDVKQESSFKQEPLLCELQEEARFSPRVSRYNPKLKSPSKNDTSLHELRPIHIQESISMNSNRQKSPPIEQESYDKENVHGQSNQTGFVTMKKASFREARDQCSLKKPNTEVLVKCSSSKELKTKAGEDNTEEREKKRRVLGEMSNQLSSVAKEIAGKWRCPQKNKRKIVPPLKQLRLDAWIHKV", "length": 439, "header": "tr|F4JML6-1|F4JML6_ARATH Isoform 1 of ATP-dependent caseinolytic protease/crotonase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JML6-1" }, "locus": { "chromosome": "4", "start_pos": 9457079, "end_pos": 9459454, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16807.1", "url": "https://www.ensemblgenomes.org/id/AT4G16807.1" }, { "database": "Ensembl Peptide", "id": "AT4G16807.1", "url": "https://www.ensemblgenomes.org/id/AT4G16807.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 226, "end_pos": 226, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JML6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JML6" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr226" }, { "start_pos": 237, "end_pos": 237, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JML6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JML6" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser237" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, 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Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JML6", "url": "https://www.uniprot.org/uniprotkb/F4JML6" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema 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"sequence": "MAIDNSRPPPDEIFYKTKKILYRGQRCNIILQDKNGPCPLIAICNVLILKHGINLDTYNSQVSEEDLVNLVIDVLDDTDEYIDIGLIRKLACGINVDLKFERITDFELTPELDIFRSLKIPLYHGWLVDPTDVEIVAAIGGRSRDELEIALTTLDTQTVSSVDFAASAEHLGLGKGDIEEDEMVSKALALSEMEASLKGSFDTQRVVSGSLDVNQISEDDTLVTSVDIEAGCATTLGSNICQLSKFDDQFSSTESEDCDVGNKTNVGEEVSSTELGDETFGNVETENSSKMTDVLISVEKTNLESTKNDIISEAITLVNADLSEKSQDDDVSQSVYEVQSLLGQSSPEGKGTKGLTQEEGELIKGFFEESVTQLTWHGLFTLEDDLKEWELCVLFRNNHFATMLQHEERLYTLVTYEGYQMQQDLVWERFNKIDGDSAFFTGYFTKFIFKDQQHAISKTENSISRIKSENMDTTEFDRLLALELEQNDWAGETGSEVPIISYKHISSSLQELKEFLIWQNEQSS", "length": 524, "header": "tr|F4JMQ2-1|F4JMQ2_ARATH Isoform 1 of FAM63A-like protein (DUF544) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JMQ2-1" }, "isoforms": [ { "isoform_ac": "F4JMQ2-1", "url": "https://www.uniprot.org/uniprotkb/F4JMQ2/entry", "sequence": { "sequence": "MAIDNSRPPPDEIFYKTKKILYRGQRCNIILQDKNGPCPLIAICNVLILKHGINLDTYNSQVSEEDLVNLVIDVLDDTDEYIDIGLIRKLACGINVDLKFERITDFELTPELDIFRSLKIPLYHGWLVDPTDVEIVAAIGGRSRDELEIALTTLDTQTVSSVDFAASAEHLGLGKGDIEEDEMVSKALALSEMEASLKGSFDTQRVVSGSLDVNQISEDDTLVTSVDIEAGCATTLGSNICQLSKFDDQFSSTESEDCDVGNKTNVGEEVSSTELGDETFGNVETENSSKMTDVLISVEKTNLESTKNDIISEAITLVNADLSEKSQDDDVSQSVYEVQSLLGQSSPEGKGTKGLTQEEGELIKGFFEESVTQLTWHGLFTLEDDLKEWELCVLFRNNHFATMLQHEERLYTLVTYEGYQMQQDLVWERFNKIDGDSAFFTGYFTKFIFKDQQHAISKTENSISRIKSENMDTTEFDRLLALELEQNDWAGETGSEVPIISYKHISSSLQELKEFLIWQNEQSS", "length": 524, "header": "tr|F4JMQ2-1|F4JMQ2_ARATH Isoform 1 of FAM63A-like protein (DUF544) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JMQ2-1" }, "locus": { "chromosome": "4", "start_pos": 12030020, "end_pos": 12033380, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G22960.1", "url": "https://www.ensemblgenomes.org/id/AT4G22960.1" }, { "database": "Ensembl Peptide", "id": "AT4G22960.1", "url": "https://www.ensemblgenomes.org/id/AT4G22960.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JMQ2", "url": "https://www.uniprot.org/uniprotkb/F4JMQ2" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JMQ2", "url": "https://www.uniprot.org/uniprotkb/F4JMQ2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G22960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G22960", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "cysteine-type carboxypeptidase activity", "id": "GO:0016807", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016807", "evidence": [ { "database": "UniProtKB", "id": "F4JMQ2", "url": "https://www.uniprot.org/uniprotkb/F4JMQ2" } ], "pmid": "" }, { "name": "cysteine-type deubiquitinase activity", "id": "GO:0004843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004843", "evidence": [ { "database": "UniProtKB", "id": "F4JMQ2", "url": "https://www.uniprot.org/uniprotkb/F4JMQ2" } ], "pmid": "" }, { "name": "K48-linked deubiquitinase activity", "id": "GO:1990380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990380", "evidence": [ { "database": "UniProtKB", "id": "F4JMQ2", "url": "https://www.uniprot.org/uniprotkb/F4JMQ2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F4JMQ2", "url": "https://www.uniprot.org/uniprotkb/F4JMQ2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JMQ2", "url": "https://www.uniprot.org/uniprotkb/F4JMQ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JMQ2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 524, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JMQ2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JMQ2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JMQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JMQ2" }, { "id": "PF04424", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04424" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MINDY deubiquitinase", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 444, "start_aa": "Phe", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 262, "end_pos": 264 }, { "start_pos": 287, "end_pos": 289 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JMQ8-1", "uniprot_ac": "F4JMQ8", "uniprot_id": "F4JMQ8_ARATH", "mass": { "chemical_mass": 106097.0, "monoisotopic_mass": 106097.0 }, "refseq": { "ac": "NP_194031", "name": "Calcineurin-like metallo-phosphoesterase superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194031" }, "gene_names": [ { "name": "F7H19.181", "type": "synonym", "evidence": [ { "id": "NP_194031", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194031" }, { "id": "F4JMQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JMQ8" } ] }, { "name": "F7H19_181", "type": "synonym", "evidence": [ { "id": "NP_194031", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194031" }, { "id": "F4JMQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JMQ8" } ] } ], "protein_names": [ { "name": "Calcineurin-like metallo-phosphoesterase superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_194031", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194031" }, { "id": "F4JMQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JMQ8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JMQ8", "url": "https://www.uniprot.org/uniprotkb/F4JMQ8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JMQ8", "locus": {} } ], "crossref": [ { "id": "AT4G23000", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G23000", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828399", "url": "https://www.ncbi.nlm.nih.gov/gene/828399", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G23000", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G23000", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MWYKEEH", "url": "https://omabrowser.org/oma/group/MWYKEEH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34211", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34211", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34211:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34211:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00149", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00149", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_194031", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194031", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G23000", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G23000", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JMQ8", "url": "https://www.uniprot.org/uniprotkb/F4JMQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JMQ8-1", "url": "https://www.uniprot.org/uniprotkb/F4JMQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSDKNSARFLHNLKMERVRTILTHTYPYPHEHSRHAMIAVVLGCMFFISSENMHSLVEKLDNNFKWWSMYACLLGFFYFFSSPFIKKTIRPSYSTFSRWYIAWILVAALYHLPSFQSMGLDLRMNLSLFLTIYISSIVFLLVFHIIFLGLWYIGLVSRVAGRRPEILTILQSCAVLSISCCIFYSHCGNRAFQRQTPLEKRHSSRFSLWKGEDGNSTWLAKFTHIDELRDQVCSSWFAPVGSARDYPLLSKWVIYGELACNGSCPDSSDEISPIYSLWATFIGLYIANYVVERSTGWALAHPLSVENYEKLKRQQMKPNFLDMVPWYSGTSADLFKTVFDLLVSVTVFLGRFDMRMMQAAMNKDCDGNKSKELLYDHFADKTDFWFDFMADTGDGGNSSYSVAKLLAQPFINVPLDNDSISLERGNILLIGGDLAYPNPSAFTYEKRLFCPFEYALQPPHWYKTDSISVNKPELPDGVSDLKHYDGPQCFLIPGNHDWFDGLNTFMRYVCHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALHGDIDVYQFNFFSKLVKEKVGENDAVIIITHEPNWLLDWYWKDDTGKNMRHLIFEFLKGRCKLRMAGDLHHYMRHSCTQSDGPVHVPHLLVNGCGGAFLHPTHVFRCFSKFYGASYESKSAYPSFEDSSRIALGNILKFRKKNWQFDFIGGIIYFLLVFSLFPQCELGHILRGDSFSGHLGSFFGTVWSSFVYVTEQSYVSFTGVLMLLITAIMFVPSKISRRKRLLIGILHVSAHLMAALILMLLLELGIEICIQHKLLANSGYHTLYQWYKSVENEHFPDPTGLRDRIEQWTFGLYPACIKYLMSAFDIPEVMAVTRTNICRERNGSHFLEAEQAIYYASVFLYFWVLLNPCCIFGFWKLLIYIHQLASHTL", "length": 919, "header": "tr|F4JMQ8-1|F4JMQ8_ARATH Isoform 1 of Calcineurin-like metallo-phosphoesterase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4JMQ8-1" }, "isoforms": [ { "isoform_ac": "F4JMQ8-1", "url": "https://www.uniprot.org/uniprotkb/F4JMQ8/entry", "sequence": { "sequence": "MGSDKNSARFLHNLKMERVRTILTHTYPYPHEHSRHAMIAVVLGCMFFISSENMHSLVEKLDNNFKWWSMYACLLGFFYFFSSPFIKKTIRPSYSTFSRWYIAWILVAALYHLPSFQSMGLDLRMNLSLFLTIYISSIVFLLVFHIIFLGLWYIGLVSRVAGRRPEILTILQSCAVLSISCCIFYSHCGNRAFQRQTPLEKRHSSRFSLWKGEDGNSTWLAKFTHIDELRDQVCSSWFAPVGSARDYPLLSKWVIYGELACNGSCPDSSDEISPIYSLWATFIGLYIANYVVERSTGWALAHPLSVENYEKLKRQQMKPNFLDMVPWYSGTSADLFKTVFDLLVSVTVFLGRFDMRMMQAAMNKDCDGNKSKELLYDHFADKTDFWFDFMADTGDGGNSSYSVAKLLAQPFINVPLDNDSISLERGNILLIGGDLAYPNPSAFTYEKRLFCPFEYALQPPHWYKTDSISVNKPELPDGVSDLKHYDGPQCFLIPGNHDWFDGLNTFMRYVCHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALHGDIDVYQFNFFSKLVKEKVGENDAVIIITHEPNWLLDWYWKDDTGKNMRHLIFEFLKGRCKLRMAGDLHHYMRHSCTQSDGPVHVPHLLVNGCGGAFLHPTHVFRCFSKFYGASYESKSAYPSFEDSSRIALGNILKFRKKNWQFDFIGGIIYFLLVFSLFPQCELGHILRGDSFSGHLGSFFGTVWSSFVYVTEQSYVSFTGVLMLLITAIMFVPSKISRRKRLLIGILHVSAHLMAALILMLLLELGIEICIQHKLLANSGYHTLYQWYKSVENEHFPDPTGLRDRIEQWTFGLYPACIKYLMSAFDIPEVMAVTRTNICRERNGSHFLEAEQAIYYASVFLYFWVLLNPCCIFGFWKLLIYIHQLASHTL", "length": 919, "header": "tr|F4JMQ8-1|F4JMQ8_ARATH Isoform 1 of Calcineurin-like metallo-phosphoesterase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4JMQ8-1" }, "locus": { "chromosome": "4", "start_pos": 12054455, "end_pos": 12060168, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G23000.1", "url": "https://www.ensemblgenomes.org/id/AT4G23000.1" }, { "database": "Ensembl Peptide", "id": "AT4G23000.1", "url": "https://www.ensemblgenomes.org/id/AT4G23000.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JMQ8", "url": "https://www.uniprot.org/uniprotkb/F4JMQ8" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JMQ8", "url": "https://www.uniprot.org/uniprotkb/F4JMQ8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" 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"glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 }, { "start_pos": 216, "end_pos": 218 }, { "start_pos": 262, "end_pos": 264 }, { "start_pos": 369, "end_pos": 371 }, { "start_pos": 398, "end_pos": 400 }, { "start_pos": 418, "end_pos": 420 }, { "start_pos": 872, "end_pos": 874 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { 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"https://www.uniprot.org/uniprotkb/F4JMR3" } ] }, { "name": "TRM11", "type": "synonym", "evidence": [ { "id": "NP_001190807", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190807" } ] } ], "protein_names": [ { "name": "DUF4378 domain-containing protein", "type": "recommended", "evidence": [ { "id": "F4JMR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JMR3/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_001190807", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190807" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JMR3", "url": "https://www.uniprot.org/uniprotkb/F4JMR3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "TRM11", "url": "https://www.uniprot.org/uniprotkb/F4JMR3", "locus": { "chromosome": "CP002686.1", "start_pos": 9669415, "end_pos": 9671348, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "AT3G26410", "url": "https://www.ensemblgenomes.org/id/AT3G26410" } ] } } ], "crossref": [ { "id": "F4JMR3", "url": "https://alphafold.ebi.ac.uk/entry/F4JMR3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G23020", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G23020", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828401", "url": "https://www.ncbi.nlm.nih.gov/gene/828401", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G23020", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G23020", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VFTETHG", "url": "https://omabrowser.org/oma/group/VFTETHG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33623", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33623", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33623:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33623:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001190807", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190807", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G23020", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G23020", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JMR2", "url": "https://www.uniprot.org/uniprotkb/F4JMR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JMR2-1", "url": "https://www.uniprot.org/uniprotkb/F4JMR2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JMR3", "url": "https://www.uniprot.org/uniprotkb/F4JMR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JMR3-1", "url": "https://www.uniprot.org/uniprotkb/F4JMR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSISSSDHPLPVSKKRLKPLILRDFLLDDLSSCSSNGFKSFPRLLNAEIQRSGMFHHNRRITCGLAFSHAVHKASTALLTAVKLLPFPSSVKSQSRDRDNKKGLFSRSFWKKLSRRELNVDVGEKERRTDDREEEIQRCRSFAEFLQESQDQLSDQIYYISPTDLFSGEATLSKDAVGDSSSFSSEDSEVTQSSSGVIVVMMSGDCVGSHVSDGSSLNDNTEIFLRGFESGFYGQYHSLPNVNLVHLKFECENEEKEQLSPISILDCPFQDDAISPPSHHKETYEKKQMRKRRRLESLVRLEPVDLEKRIEKYEERQDYKSHIIEIEEDQSEIRANRLFALVKSRIIEEQNQLLASHVVDNVLLDFFKENNNNETRDEDKLVEIVEEWVMRRQDDEYNMFMSWKVSEKREIYVKEMKWGCINGDEKEYVVEELGNGFLTSLVDELIHDISL", "length": 452, "header": "tr|F4JMR3-1|F4JMR3_ARATH Isoform 1 of DUF4378 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM11 PE=4 SV=1 CANONICAL=F4JMR3-1" }, "isoforms": [ { "isoform_ac": "F4JMR2-1", "url": "https://www.uniprot.org/uniprotkb/F4JMR2/entry", "sequence": { "sequence": "MTSISSSDHPLPVSKKRLKPLILRDFLLDDLSSCSSNGFKSFPRLLNAEIQRSGMFHHNRRITCGLAFSHAVHKASTALLTAVKLLPFPSSVKSQSRDRDNKKGLFSRSFWKKLSRRELNVDVGEKERRTDDREEEIQRCRSFAEFLQESQDQLSDQIYYISPTDLFSGEATLSKDAVGDSSSFSSEDSEVTQSSSGVIVVMMSGDCVGSHVSDGSSLNDNTEECENEEKEQLSPISILDCPFQDDAISPPSHHKETYEKKQMRKRRRLESLVRLEPVDLEKRIEKYEERQDYKSHIIEIEEDQSEIRANRLFALVKSRIIEEQNQLLASHVVDNVLLDFFKENNNNETRDEDKLVEIVEEWVMRRQDDEYNMFMSWKVSEKREIYVKEMKWGCINGDEKEYVVEELGNGFLTSLVDELIHDISL", "length": 425, "header": "tr|F4JMR2-1|F4JMR3_ARATH Computationally mapped isoform of DUF4378 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM11 PE=4 SV=1 CANONICAL=F4JMR3-1" }, "locus": { "chromosome": "4", "start_pos": 12066194, "end_pos": 12068624, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G23020.1", "url": "https://www.ensemblgenomes.org/id/AT4G23020.1" }, { "database": "Ensembl Peptide", "id": "AT4G23020.1", "url": "https://www.ensemblgenomes.org/id/AT4G23020.1" } ] } }, { "isoform_ac": "F4JMR3-1", "url": "https://www.uniprot.org/uniprotkb/F4JMR3/entry", "sequence": { "sequence": "MTSISSSDHPLPVSKKRLKPLILRDFLLDDLSSCSSNGFKSFPRLLNAEIQRSGMFHHNRRITCGLAFSHAVHKASTALLTAVKLLPFPSSVKSQSRDRDNKKGLFSRSFWKKLSRRELNVDVGEKERRTDDREEEIQRCRSFAEFLQESQDQLSDQIYYISPTDLFSGEATLSKDAVGDSSSFSSEDSEVTQSSSGVIVVMMSGDCVGSHVSDGSSLNDNTEIFLRGFESGFYGQYHSLPNVNLVHLKFECENEEKEQLSPISILDCPFQDDAISPPSHHKETYEKKQMRKRRRLESLVRLEPVDLEKRIEKYEERQDYKSHIIEIEEDQSEIRANRLFALVKSRIIEEQNQLLASHVVDNVLLDFFKENNNNETRDEDKLVEIVEEWVMRRQDDEYNMFMSWKVSEKREIYVKEMKWGCINGDEKEYVVEELGNGFLTSLVDELIHDISL", "length": 452, "header": "tr|F4JMR3-1|F4JMR3_ARATH Isoform 1 of DUF4378 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM11 PE=4 SV=1 CANONICAL=F4JMR3-1" }, "locus": { "chromosome": "4", "start_pos": 12066173, "end_pos": 12068538, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G23020.2", "url": "https://www.ensemblgenomes.org/id/AT4G23020.2" }, { "database": "Ensembl Peptide", "id": "AT4G23020.2", "url": "https://www.ensemblgenomes.org/id/AT4G23020.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, 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Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JMS0", "url": "https://www.uniprot.org/uniprotkb/F4JMS0" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete 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"publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JN04", "url": "https://www.uniprot.org/uniprotkb/F4JN04" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "F4JN04", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JN04" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4JN04", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JN04" } ], "reference": [ { "type": "PubMed", "id": 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"https://www.uniprot.org/uniprotkb/F4JN48-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGLDSVFLSNQTTHQPVRSASLPSRIHPLSVKLRTALSRLSIWRRSSSSISVSASFGYETVLVGLVNLTELYGCVHELLESPYVKHTLLHHQEGKLLDESLDGSVLLLDVYEGTREVIVAMREHVTNLKSALRRKGSLEKEAKAYFNLRKKAKKEISKQINALKKMETRDISTNTDQDSAIASTSVLRETIQITVSMFRHLLLFLSTIPPPPSPAIFKTTIGLLSIPFVSPSLSDKSLILIKEMKSLDDVFLGSILDSRKTLFEVETMENEKMRRDVVEDGFRDLEAELDSVSKCLVKNRVLFLNILSNCYY", "length": 313, "header": "tr|F4JN48-1|F4JN48_ARATH Isoform 1 of Selection/upkeep of intraepithelial T-cells protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JN48-1" }, "isoforms": [ { "isoform_ac": "F4JN48-1", "url": "https://www.uniprot.org/uniprotkb/F4JN48/entry", "sequence": { "sequence": "MEGLDSVFLSNQTTHQPVRSASLPSRIHPLSVKLRTALSRLSIWRRSSSSISVSASFGYETVLVGLVNLTELYGCVHELLESPYVKHTLLHHQEGKLLDESLDGSVLLLDVYEGTREVIVAMREHVTNLKSALRRKGSLEKEAKAYFNLRKKAKKEISKQINALKKMETRDISTNTDQDSAIASTSVLRETIQITVSMFRHLLLFLSTIPPPPSPAIFKTTIGLLSIPFVSPSLSDKSLILIKEMKSLDDVFLGSILDSRKTLFEVETMENEKMRRDVVEDGFRDLEAELDSVSKCLVKNRVLFLNILSNCYY", "length": 313, "header": "tr|F4JN48-1|F4JN48_ARATH Isoform 1 of Selection/upkeep of intraepithelial T-cells protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JN48-1" }, "locus": { "chromosome": "4", "start_pos": 16917892, "end_pos": 16918897, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G35680.1", "url": "https://www.ensemblgenomes.org/id/AT4G35680.1" }, { "database": "Ensembl Peptide", "id": "AT4G35680.1", "url": "https://www.ensemblgenomes.org/id/AT4G35680.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 247, "end_pos": 247, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JN48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JN48" } ], "site_lbl": "Ser247" }, { "start_pos": 259, "end_pos": 259, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JN48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JN48" } ], "site_lbl": "Ser259" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JN48", "url": "https://www.uniprot.org/uniprotkb/F4JN48" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JN48", "url": "https://www.uniprot.org/uniprotkb/F4JN48" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G35680", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G35680", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JN48", "url": "https://www.uniprot.org/uniprotkb/F4JN48" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "root development", "id": "GO:0048364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048364", "evidence": [ { "database": "UniProtKB", "id": "F4JN48", "url": "https://www.uniprot.org/uniprotkb/F4JN48" } ], "pmid": "" }, { "name": "shoot system development", "id": "GO:0048367", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048367", "evidence": [ { "database": "UniProtKB", "id": "F4JN48", "url": "https://www.uniprot.org/uniprotkb/F4JN48" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JN48-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 313, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JN48-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JN48" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 247, 259 ], "sequon_annotation_sites": [ { "start_pos": 11, "end_pos": 13 }, { "start_pos": 68, "end_pos": 70 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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[ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JN57-1", "uniprot_ac": "F4JN57", "uniprot_id": "F4JN57_ARATH", "mass": { "chemical_mass": 60017.0, "monoisotopic_mass": 60017.0 }, "refseq": { "ac": "NP_001319897", "name": "DDE family endonuclease", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319897" }, "gene_names": [], "protein_names": [ { "name": "DDE family endonuclease", "type": "synonym", "evidence": [ { "id": "NP_001319897", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319897" }, { "id": "F4JN57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JN57/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JN57", "url": "https://www.uniprot.org/uniprotkb/F4JN57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JN57", "locus": {} } ], "crossref": [ { "id": "AT4G10890", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G10890", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "826688", "url": "https://www.ncbi.nlm.nih.gov/gene/826688", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018838", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018838", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052800", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052800", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058353", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058353", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G10890", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G10890", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR28535", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28535", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28535:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28535:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10382", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10382", "database": "Pfam", "categories": [ "Protein Classification", 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"https://www.ensemblgenomes.org/id/AT4G10890.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 100, "end_pos": 100, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JN57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JN57" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser100" }, { "start_pos": 102, "end_pos": 102, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JN57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JN57" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Tyr102" }, { "start_pos": 104, "end_pos": 104, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", 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R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JN57", "url": "https://www.uniprot.org/uniprotkb/F4JN57" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study 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"locus": {} } ], "crossref": [ { "id": "F4JN77", "url": "https://alphafold.ebi.ac.uk/entry/F4JN77", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G11000", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G11000", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "826701", "url": "https://www.ncbi.nlm.nih.gov/gene/826701", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G11000", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G11000", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TICPTRD", "url": "https://omabrowser.org/oma/group/TICPTRD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24186:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24186:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13962", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13962", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G11000", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G11000", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JN77", "url": "https://www.uniprot.org/uniprotkb/F4JN77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JN77-1", "url": "https://www.uniprot.org/uniprotkb/F4JN77-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JN77", "url": "https://www.uniprot.org/uniprotkb/F4JN77" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JN77", "url": "https://www.uniprot.org/uniprotkb/F4JN77" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G11000", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G11000", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { 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"AT4G16915", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G16915", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JNB3", "url": "https://www.uniprot.org/uniprotkb/F4JNB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNB3-1", "url": "https://www.uniprot.org/uniprotkb/F4JNB3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKHLKPDFKYSTAQLQVMMPLKSILDLFWCPSGVKISRNSLRFVLSSPHFLNSIPFKYLDTLATSHKSSLPRSYSMSFMFLGITRVVIEFGGCGRKRHGSSDAFNADERIFQRSKTERSKNRVVLLFWTWNHKSFLVVSAPSSAGENGLCEKLRNRLVITSIVMVDPMFIIKQSFKADLNCSGSAVKGVVPIRPYDSWMILHGLEVDQTMSPVESLKALSFTRRIVPYAGYIFGRS", "length": 236, "header": "tr|F4JNB3-1|F4JNB3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JNB3-1" }, "isoforms": [ { "isoform_ac": "F4JNB3-1", "url": "https://www.uniprot.org/uniprotkb/F4JNB3/entry", "sequence": { "sequence": "MKHLKPDFKYSTAQLQVMMPLKSILDLFWCPSGVKISRNSLRFVLSSPHFLNSIPFKYLDTLATSHKSSLPRSYSMSFMFLGITRVVIEFGGCGRKRHGSSDAFNADERIFQRSKTERSKNRVVLLFWTWNHKSFLVVSAPSSAGENGLCEKLRNRLVITSIVMVDPMFIIKQSFKADLNCSGSAVKGVVPIRPYDSWMILHGLEVDQTMSPVESLKALSFTRRIVPYAGYIFGRS", "length": 236, "header": "tr|F4JNB3-1|F4JNB3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JNB3-1" }, "locus": { "chromosome": "4", "start_pos": 9516724, "end_pos": 9518697, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16915.1", "url": "https://www.ensemblgenomes.org/id/AT4G16915.1" }, { "database": "Ensembl Peptide", "id": "AT4G16915.1", "url": "https://www.ensemblgenomes.org/id/AT4G16915.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JNB3", "url": "https://www.uniprot.org/uniprotkb/F4JNB3" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JNB3", "url": "https://www.uniprot.org/uniprotkb/F4JNB3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G16915", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16915", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JNB3", "url": "https://www.uniprot.org/uniprotkb/F4JNB3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 180, "end_pos": 182, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JNB3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 236, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JNB3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JNB3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 180, "end_pos": 182 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JNB9-1", "uniprot_ac": "F4JNB9", "uniprot_id": "F4JNB9_ARATH", "mass": { "chemical_mass": 114132.0, "monoisotopic_mass": 114132.0 }, "refseq": { "ac": "NP_001319971", "name": "disease resistance protein (TIR-NBS-LRR class)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319971" }, "gene_names": [ { "name": "SIKIC3", "type": "recommended", "evidence": [ { "id": "F4JNB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNB9" } ] }, { "name": "DL4510C", "type": "synonym", "evidence": [ { "id": "NP_001319971", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319971" }, { "id": "F4JNB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNB9" } ] }, { "name": "FCAALL.317", "type": "synonym", "evidence": [ { "id": "NP_001319971", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319971" }, { "id": "F4JNB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNB9" } ] } ], "protein_names": [ { "name": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase", "type": "recommended", "evidence": [ { "id": "F4JNB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNB9/entry#names_and_taxonomy" } ] }, { "name": "3.2.2.6", "type": "synonym", "evidence": [ { "id": "F4JNB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNB9/entry#names_and_taxonomy" } ] }, { "name": "disease resistance protein (TIR-NBS-LRR class)", "type": "synonym", "evidence": [ { "id": "NP_001319971", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319971" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JNB9", "url": "https://www.uniprot.org/uniprotkb/F4JNB9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "SIKIC3", "url": "https://www.uniprot.org/uniprotkb/F4JNB9", "locus": {} } ], "crossref": [ { "id": "F4JNB9", "url": "https://alphafold.ebi.ac.uk/entry/F4JNB9", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G16960", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G16960", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827404", "url": "https://www.ncbi.nlm.nih.gov/gene/827404", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011713", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011713", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G16960", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16960", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PENFANC", "url": "https://omabrowser.org/oma/group/PENFANC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017:SF274", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017:SF274", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07725", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07725", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001319971", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319971", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16301", "url": "https://www.rhea-db.org/rhea/16301", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT4G16960", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G16960", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JNB9", "url": "https://www.uniprot.org/uniprotkb/F4JNB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNB9-1", "url": "https://www.uniprot.org/uniprotkb/F4JNB9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JNB9", "url": "https://www.uniprot.org/uniprotkb/F4JNB9" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JNB9", "url": "https://www.uniprot.org/uniprotkb/F4JNB9" } ], "reference": [ { "type": "PubMed", "id": "27862469", 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"Protein" ] }, { "id": "F4JNF8", "url": "https://www.uniprot.org/uniprotkb/F4JNF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNF8-1", "url": "https://www.uniprot.org/uniprotkb/F4JNF8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRYNSYDSRSSVTSSIHSDLSSSAEFKSNKPISSKAIVRSKSSYLTKTTKPIKPDSNPGNLTNMMKKLMEMKKSNSKSKRVELVIPEELKKIDTGKGGGKSTLGTLQRKLFGKEKVKALTEVKSNTRTLSMVLRSERELLGMNKDQEVEIAELKFQLEEKNREVEKLKDLCLKQREEIKSLKSAVLFPDSMNSQINQMQELNQAREIIPNLQKQVISLNGQLQCIAQDLAEVKANKYLSESCYWQAQTSSYDSLEFSSGSPDGLALEDLNPCLTPYTKKKPKEYERVDSAEESLSGRSTITTTGGKVKSSSRSVKMSRSSEGKAGQRSEESKGWYRGGRMF", "length": 343, "header": "tr|F4JNF8-1|F4JNF8_ARATH Isoform 1 of Structural maintenance of chromosomes protein OS=Arabidopsis thaliana OX=3702 GN=DL4655C PE=1 SV=1 CANONICAL=F4JNF8-1" }, "isoforms": [ { "isoform_ac": "F4JNF7-1", "url": "https://www.uniprot.org/uniprotkb/F4JNF7/entry", "sequence": { "sequence": 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"MASRYNSYDSRSSVTSSIHSDLSSSAEFKSNKPISSKAIVRSKSSYLTKTTKPIKPDSNPGNLTNMMKKLMEMKKSNSKSKRVELVIPEELKKIDTGKGGGKSTLGTLQRKLFGKEKVKALTEVKSNTRTLSMVLRSERELLGMNKDQEVEIAELKFQLEEKNREVEKLKDLCLKQREEIKSLKSAVLFPDSMNSQINQMQELNQAREIIPNLQKQVISLNGQLQCIAQDLAEVKANKYLSESCYWQAQTSSYDSLEFSSGSPDGLALEDLNPCLTPYTKKKPKEYERVDSAEESLSGRSTITTTGGKVKSSSRSVKMSRSSEGKAGQRSEESKGWYRGGRMF", "length": 343, "header": "tr|F4JNF8-1|F4JNF8_ARATH Isoform 1 of Structural maintenance of chromosomes protein OS=Arabidopsis thaliana OX=3702 GN=DL4655C PE=1 SV=1 CANONICAL=F4JNF8-1" }, "locus": { "chromosome": "4", "start_pos": 9666439, "end_pos": 9668507, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G17240.1", "url": "https://www.ensemblgenomes.org/id/AT4G17240.1" }, { "database": "Ensembl Peptide", "id": "AT4G17240.1", "url": "https://www.ensemblgenomes.org/id/AT4G17240.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of 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R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JNF7", "url": "https://www.uniprot.org/uniprotkb/F4JNF7" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JNF7", "url": "https://www.uniprot.org/uniprotkb/F4JNF7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G17240", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G17240", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JNF8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 343, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", 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] } ], "sequence": { "sequence": "MDAGAEIDVVRPVEADSAAEISPEQDHEGRSEPSSLNQGEILKTLATVEKDSQAIAESFSSLFVSLRSTLSEATGSSVDHMACFGEAAGRLQENALDAATKGNRYINSCLRLWITYFSYIKILIIKLMMPKNSKLTFRSLSKSLSLFGSSSPARLNLWFLWIGFVSVRTESSTISPLADALEEEALDVDDFEADKKPEDLQPSVVYQQRLLEERKIYENEQQREVERLKSDLKEKKRLARMLDNKEIFRVIRLRQPEFERLRSERSILVK", "length": 270, "header": "tr|F4JNI1-1|F4JNI1_ARATH Isoform 1 of BLOC-1-related complex subunit 6 C-terminal helix domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JNI1-1" }, "isoforms": [ { "isoform_ac": "F4JNI1-1", "url": "https://www.uniprot.org/uniprotkb/F4JNI1/entry", "sequence": { "sequence": "MDAGAEIDVVRPVEADSAAEISPEQDHEGRSEPSSLNQGEILKTLATVEKDSQAIAESFSSLFVSLRSTLSEATGSSVDHMACFGEAAGRLQENALDAATKGNRYINSCLRLWITYFSYIKILIIKLMMPKNSKLTFRSLSKSLSLFGSSSPARLNLWFLWIGFVSVRTESSTISPLADALEEEALDVDDFEADKKPEDLQPSVVYQQRLLEERKIYENEQQREVERLKSDLKEKKRLARMLDNKEIFRVIRLRQPEFERLRSERSILVK", "length": 270, "header": "tr|F4JNI1-1|F4JNI1_ARATH Isoform 1 of BLOC-1-related complex subunit 6 C-terminal helix domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JNI1-1" }, "locus": { "chromosome": "4", "start_pos": 12192115, "end_pos": 12195019, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G23330.1", "url": "https://www.ensemblgenomes.org/id/AT4G23330.1" }, { "database": "Ensembl Peptide", "id": "AT4G23330.1", "url": "https://www.ensemblgenomes.org/id/AT4G23330.1" } ] } }, { "isoform_ac": "F4JNI2-1", "url": "https://www.uniprot.org/uniprotkb/F4JNI2/entry", "sequence": { "sequence": "MDAGAEIDVVRPVEADSAAEISPEQDHEGRSEPSSLNQGEILKTLATVEKDSQAIAESFSSLFVSLRSTLSEATGSSVDHMACFGEAAGRLQENALDAATKGNRYINSCLRLNEEIKGVENLAARLKHLRKNVDVLDTAVNKLLRPP", "length": 147, "header": "tr|F4JNI2-1|F4JNI2_ARATH Computationally mapped isoform of BLOC-1-related complex subunit 6 C-terminal helix domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JNI1-1" }, "locus": { "chromosome": "4", "start_pos": 12191879, "end_pos": 12194755, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G23330.3", "url": "https://www.ensemblgenomes.org/id/AT4G23330.3" }, { "database": "Ensembl Peptide", "id": "AT4G23330.3", "url": "https://www.ensemblgenomes.org/id/AT4G23330.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JNI1", "url": "https://www.uniprot.org/uniprotkb/F4JNI1" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JNI1", "url": "https://www.uniprot.org/uniprotkb/F4JNI1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G23330", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G23330", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { 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"yes" } }, { "uniprot_canonical_ac": "F4JNI3-1", "uniprot_ac": "F4JNI3", "uniprot_id": "F4JNI3_ARATH", "mass": { "chemical_mass": 36794.0, "monoisotopic_mass": 36794.0 }, "refseq": { "ac": "NP_194065", "name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194065" }, "gene_names": [ { "name": "F16G20.40", "type": "synonym", "evidence": [ { "id": "NP_194065", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194065" }, { "id": "F4JNI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNI3" } ] } ], "protein_names": [ { "name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_194065", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194065" }, { "id": "F4JNI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNI3/entry#names_and_taxonomy" } ] } ], 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"database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31589", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31589", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31589:SF61", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31589:SF61", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03080", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03080", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14365", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14365", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G23350", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G23350", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JNI5", "url": "https://www.uniprot.org/uniprotkb/F4JNI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNI5-1", "url": "https://www.uniprot.org/uniprotkb/F4JNI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASFNHFVLLLLLIITLILSAEATKERRAIPSKAERNEMKRQLKAINKPAIKSFKTEHGDIFDCIDIHKQLAFDHHLLKNHSVQLRPTTVPEYITGNNISESFSLLQEGISCPDGTVIVKRTTMQDLMHAQRLKSMGFEGPRPFLTETNNMNFNGKFYDARADYGPNPFAGVAGNINIWKPKILQDQVSIGYMAVSGGPIEEDFASISVGWIVNPSMHHGDHVRLYAYWTLHGSSTGGCYGMSCPGFVQVSKTIPVGAVLQPFSIYNGRQYELRLGLFQDSGTGNWWFVFKEEIIGYWPASLFKSWMESNSANYASWGGQVYSPIREKSPPMGSGHWPSEGFHKAAFISGLKLFDGHGKVYNPGRGTVKVHESRPICYKARYVHDVDKPWLKSVYFGGPGGCIG", "length": 404, "header": "tr|F4JNI5-1|F4JNI5_ARATH Isoform 1 of Transmembrane protein, putative (DUF239) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JNI5-1" }, "isoforms": [ { "isoform_ac": "F4JNI5-1", "url": "https://www.uniprot.org/uniprotkb/F4JNI5/entry", "sequence": { "sequence": 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"publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31589:SF171", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03080", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03080", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14365", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14365", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_194069", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194069", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G23380", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G23380", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JNI8", "url": "https://www.uniprot.org/uniprotkb/F4JNI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNI8-1", "url": "https://www.uniprot.org/uniprotkb/F4JNI8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSSNKNLVLRILLTISLVLVSEAAHESRGIPSEEEKKEMERQLKAINKPAIKSFKTEQVEIFDCIDIHKQLAFDHHLLRNHSVKLKPTSVPKWPITYDNKGQKVGPMQLQLKGISCPHGTVIVKRTTIQDLINSQHLKSIGFNIPRHVLSQGSNIDLSGHHFATADYDYDNVAGVTGNINLWDPQVSHDQVSLATMAIAGGPKIEQLASISVGWMVNPLLYQDHIHLYTYWTADGYNKTGCYDIRCPGFVQVSKRIPLGVLLQPISVYNGTQKEMDLSLHQVVTSRVSGVNVGYWPQSLFIASGLVKGADLASWGGQVYSPKTEKSPIMGSGHFPKEGFGKAAFVNNIHIMNGKGEALIPQIYTIETHESSPNCYKAKFVHDEDEPWIRAVYFGGPGGC", "length": 400, "header": "tr|F4JNI8-1|F4JNI8_ARATH Isoform 1 of NEP-interacting protein, putative (DUF239) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JNI8-1" }, "isoforms": [ { "isoform_ac": "F4JNI8-1", "url": "https://www.uniprot.org/uniprotkb/F4JNI8/entry", "sequence": { "sequence": "MDSSNKNLVLRILLTISLVLVSEAAHESRGIPSEEEKKEMERQLKAINKPAIKSFKTEQVEIFDCIDIHKQLAFDHHLLRNHSVKLKPTSVPKWPITYDNKGQKVGPMQLQLKGISCPHGTVIVKRTTIQDLINSQHLKSIGFNIPRHVLSQGSNIDLSGHHFATADYDYDNVAGVTGNINLWDPQVSHDQVSLATMAIAGGPKIEQLASISVGWMVNPLLYQDHIHLYTYWTADGYNKTGCYDIRCPGFVQVSKRIPLGVLLQPISVYNGTQKEMDLSLHQVVTSRVSGVNVGYWPQSLFIASGLVKGADLASWGGQVYSPKTEKSPIMGSGHFPKEGFGKAAFVNNIHIMNGKGEALIPQIYTIETHESSPNCYKAKFVHDEDEPWIRAVYFGGPGGC", "length": 400, "header": "tr|F4JNI8-1|F4JNI8_ARATH Isoform 1 of NEP-interacting protein, putative (DUF239) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JNI8-1" }, "locus": { "chromosome": "4", "start_pos": 12214667, "end_pos": 12216333, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G23380.1", "url": "https://www.ensemblgenomes.org/id/AT4G23380.1" }, { "database": "Ensembl Peptide", "id": "AT4G23380.1", "url": "https://www.ensemblgenomes.org/id/AT4G23380.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JNI8", "url": "https://www.uniprot.org/uniprotkb/F4JNI8" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JNI8", "url": "https://www.uniprot.org/uniprotkb/F4JNI8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G23380", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G23380", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4JNI8", "url": "https://www.uniprot.org/uniprotkb/F4JNI8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 238, "end_pos": 240, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JNI8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 400, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JNI8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JNI8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JNI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNI8" }, { "id": "PS52045", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52045" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neprosin PEP catalytic", "eco_id": "ECO_0000259", "start_pos": 155, "end_pos": 400, "start_aa": "Asn", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 238, "end_pos": 240 }, { "start_pos": 270, "end_pos": 272 }, { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JNL5-1", "uniprot_ac": "F4JNL5", "uniprot_id": "F4JNL5_ARATH", "mass": { "chemical_mass": 123478.0, "monoisotopic_mass": 123478.0 }, "refseq": { "ac": "NP_194085", "name": "ARM repeat superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194085" }, "gene_names": [ { "name": "F16G20.240", "type": "synonym", "evidence": [ { "id": "NP_194085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194085" }, { "id": "F4JNL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNL5" } ] }, { "name": "F16G20_240", "type": "synonym", "evidence": [ { "id": "NP_194085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194085" }, { "id": "F4JNL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNL5" } ] } ], "protein_names": [ { "name": "ARM repeat superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_194085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194085" }, { "id": "F4JNL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNL5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis 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"https://www.ebi.ac.uk/interpro/entry/IPR012978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G23540", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G23540", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AFCRYPV", "url": "https://omabrowser.org/oma/group/AFCRYPV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48412:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48412:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08161", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08161", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25772", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25772", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_194085", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194085", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G23540", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G23540", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JNL5", "url": "https://www.uniprot.org/uniprotkb/F4JNL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNL5-1", "url": "https://www.uniprot.org/uniprotkb/F4JNL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JNL5", "url": "https://www.uniprot.org/uniprotkb/F4JNL5" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4JNL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNL5" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JNL5", "url": "https://www.uniprot.org/uniprotkb/F4JNL5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF03398", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_194673", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194673", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G29440", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G29440", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JNM2", "url": "https://www.uniprot.org/uniprotkb/F4JNM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNM2-1", "url": "https://www.uniprot.org/uniprotkb/F4JNM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNM3", "url": "https://www.uniprot.org/uniprotkb/F4JNM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNM3-1", "url": "https://www.uniprot.org/uniprotkb/F4JNM3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKVLHRSFKPAKCKIALQMAASRLKILKNKKDTQIKQLRRELAHLLESGQTQTAKIRVEHVVREEKTVAAYELVGIYCELLVARLGVIDSQKTCPNDLKEAVASVLYASQRLTDVGELSDIVKHFSAKYGKDFVSAAIGLQPDSGVSRLLVEKLSVKAPDGPTKIKILTEIATQHNVTWEAESLVESDPKETMSASGASSSVSQPATGIKSESSRIQNNQPPVFQAAATVNVSQNSYATDGRSSSRMTSTDFNVGKTPDHYHQDPKPSGDRVDGREHRDHNPGHGDTSPFETKFVDATSAARAAAESAERASFAARRAAELSSKERMMMMQNSTESRNSSSYENLRSNPPHSRTSSSNMQGGGFGKEELLKSNNRQVDQSTTTTRAESSKKTVDELSENTSWRRGHSRENSLEMRPNDSFAKIGREKQQPGMDDINLSSSADVLNKKQSSRASSHSPSSNFSDDNDVTALDHIDSPSIFEENKFQSTVGDRESYNDSPVVVVAPAFDDYSSFFDKPQFDTEDAYHDEPEQGLGFSLLGSSSKTSDHMPTEISSWSLEGHKDLGKLSSASTSQVLEKEKPSSPPTFDDGPTSPPASLHEPEPSAKFDDYDRDSESEEDNLGRLSGRAEGKSKLTAQKSHMSEGPDDLGRYFFPSDTEDQGDDSKTQEESDAETPTGLKFGPLASGLENETTLPSYGSSPPRDKTSSKSIKEYLPTEVDPSRSSSLQTASSSSIRNELYTQKASNSDKRPSSIPPDSSSSDDESDMELPKRVSFRYQEKRTESRTRPTHLHSGVSHKDLEEEIPTRASTRSQDRRTHKTTPASASASYFHTMSSDDEDEKEVHRDTAHIQTRPYISISRRTKGQERRPSLVTAKIDKVSFDEESPPKLSPEAKPLTKQQGSASSLSYLPKTEKVSHDQESHPKLGLGAKPLIKQQGSASSLSFLPKTNKASPDQDSPPKLVPKEKPAAKQRGSASSLSFLPKTDKASPDQDSPPKLLPKEKPAAKQQGSATSSSSLPKTEKISHYRESPSKLTPEAKSMAKQEGLASSSSSLPKTVTSPDPETPAKEKASHVHPKLPDYDDIFAKLGALRR", "length": 1090, "header": "tr|F4JNM2-1|F4JNM2_ARATH Isoform 1 of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL4 PE=1 SV=1 CANONICAL=F4JNM2-1" }, "isoforms": [ { "isoform_ac": "F4JNM2-1", "url": "https://www.uniprot.org/uniprotkb/F4JNM2/entry", "sequence": { "sequence": "MKKVLHRSFKPAKCKIALQMAASRLKILKNKKDTQIKQLRRELAHLLESGQTQTAKIRVEHVVREEKTVAAYELVGIYCELLVARLGVIDSQKTCPNDLKEAVASVLYASQRLTDVGELSDIVKHFSAKYGKDFVSAAIGLQPDSGVSRLLVEKLSVKAPDGPTKIKILTEIATQHNVTWEAESLVESDPKETMSASGASSSVSQPATGIKSESSRIQNNQPPVFQAAATVNVSQNSYATDGRSSSRMTSTDFNVGKTPDHYHQDPKPSGDRVDGREHRDHNPGHGDTSPFETKFVDATSAARAAAESAERASFAARRAAELSSKERMMMMQNSTESRNSSSYENLRSNPPHSRTSSSNMQGGGFGKEELLKSNNRQVDQSTTTTRAESSKKTVDELSENTSWRRGHSRENSLEMRPNDSFAKIGREKQQPGMDDINLSSSADVLNKKQSSRASSHSPSSNFSDDNDVTALDHIDSPSIFEENKFQSTVGDRESYNDSPVVVVAPAFDDYSSFFDKPQFDTEDAYHDEPEQGLGFSLLGSSSKTSDHMPTEISSWSLEGHKDLGKLSSASTSQVLEKEKPSSPPTFDDGPTSPPASLHEPEPSAKFDDYDRDSESEEDNLGRLSGRAEGKSKLTAQKSHMSEGPDDLGRYFFPSDTEDQGDDSKTQEESDAETPTGLKFGPLASGLENETTLPSYGSSPPRDKTSSKSIKEYLPTEVDPSRSSSLQTASSSSIRNELYTQKASNSDKRPSSIPPDSSSSDDESDMELPKRVSFRYQEKRTESRTRPTHLHSGVSHKDLEEEIPTRASTRSQDRRTHKTTPASASASYFHTMSSDDEDEKEVHRDTAHIQTRPYISISRRTKGQERRPSLVTAKIDKVSFDEESPPKLSPEAKPLTKQQGSASSLSYLPKTEKVSHDQESHPKLGLGAKPLIKQQGSASSLSFLPKTNKASPDQDSPPKLVPKEKPAAKQRGSASSLSFLPKTDKASPDQDSPPKLLPKEKPAAKQQGSATSSSSLPKTEKISHYRESPSKLTPEAKSMAKQEGLASSSSSLPKTVTSPDPETPAKEKASHVHPKLPDYDDIFAKLGALRR", "length": 1090, "header": "tr|F4JNM2-1|F4JNM2_ARATH Isoform 1 of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL4 PE=1 SV=1 CANONICAL=F4JNM2-1" }, "locus": { "chromosome": "4", "start_pos": 14473757, "end_pos": 14477963, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G29440.1", "url": "https://www.ensemblgenomes.org/id/AT4G29440.1" }, { "database": "Ensembl Peptide", "id": "AT4G29440.1", "url": "https://www.ensemblgenomes.org/id/AT4G29440.1" } ] } }, { "isoform_ac": "F4JNM3-1", "url": "https://www.uniprot.org/uniprotkb/F4JNM3/entry", "sequence": { "sequence": "MNKKDTQIKQLRRELAHLLESGQTQTAKIRVEHVVREEKTVAAYELVGIYCELLVARLGVIDSQKTCPNDLKEAVASVLYASQRLTDVGELSDIVKHFSAKYGKDFVSAAIGLQPDSGVSRLLVEKLSVKAPDGPTKIKILTEIATQHNVTWEAESLVESDPKETMSASGASSSVSQPATGIKSESSRIQNNQPPVFQAAATVNVSQNSYATDGRSSSRMTSTDFNVGKTPDHYHQDPKPSGDRVDGREHRDHNPGHGDTSPFETKFVDATSAARAAAESAERASFAARRAAELSSKERMMMMQNSTESRNSSSYENLRSNPPHSRTSSSNMQGGGFGKEELLKSNNRQVDQSTTTTRAESSKKTVDELSENTSWRRGHSRENSLEMRPNDSFAKIGREKQQPGMDDINLSSSADVLNKKQSSRASSHSPSSNFSDDNDVTALDHIDSPSIFEENKFQSTVGDRESYNDSPVVVVAPAFDDYSSFFDKPQFDTEDAYHDEPEQGLGFSLLGSSSKTSDHMPTEISSWSLEGHKDLGKLSSASTSQVLEKEKPSSPPTFDDGPTSPPASLHEPEPSAKFDDYDRDSESEEDNLGRLSGRAEGKSKLTAQKSHMSEGPDDLGRYFFPSDTEDQGDDSKTQEESDAETPTGLKFGPLASGLENETTLPSYGSSPPRDKTSSKSIKEYLPTEVDPSRSSSLQTASSSSIRNELYTQKASNSDKRPSSIPPDSSSSDDESDMELPKRVSFRYQEKRTESRTRPTHLHSGVSHKDLEEEIPTRASTRSQDRRTHKTTPASASASYFHTMSSDDEDEKEVHRDTAHIQTRPYISISRRTKGQERRPSLVTAKIDKVSFDEESPPKLSPEAKPLTKQQGSASSLSYLPKTEKVSHDQESHPKLGLGAKPLIKQQGSASSLSFLPKTNKASPDQDSPPKLVPKEKPAAKQRGSASSLSFLPKTDKASPDQDSPPKLLPKEKPAAKQQGSATSSSSLPKTEKISHYRESPSKLTPEAKSMAKQEGLASSSSSLPKTVTSPDPETPAKEKASHVHPKLPDYDDIFAKLGALRR", "length": 1062, "header": "tr|F4JNM3-1|F4JNM3_ARATH Computationally mapped isoform of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL4 PE=1 SV=1 CANONICAL=F4JNM2-1" }, "locus": { "chromosome": "4", "start_pos": 14473757, "end_pos": 14477935, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G29440.2", "url": "https://www.ensemblgenomes.org/id/AT4G29440.2" }, { "database": "Ensembl Peptide", "id": "AT4G29440.2", "url": "https://www.ensemblgenomes.org/id/AT4G29440.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 591, "start_aa": "Thr", "end_pos": 591, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr591", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JNM2", "url": "https://www.uniprot.org/uniprotkb/F4JNM2" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "F4JNM2", "url": "https://www.uniprot.org/uniprotkb/F4JNM2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JNM2", "url": "https://www.uniprot.org/uniprotkb/F4JNM2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G29440", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G29440", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JNM2", "url": "https://www.uniprot.org/uniprotkb/F4JNM2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F4JNM2", "url": "https://www.uniprot.org/uniprotkb/F4JNM2" } ], "pmid": "" }, { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "F4JNM2", "url": "https://www.uniprot.org/uniprotkb/F4JNM2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 232, "end_pos": 234, "annotation": "n_glycosylation_sequon" }, { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" }, { "start_pos": 339, "end_pos": 341, "annotation": "n_glycosylation_sequon" }, { "start_pos": 400, "end_pos": 402, "annotation": "n_glycosylation_sequon" }, { "start_pos": 418, "end_pos": 420, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" }, { "start_pos": 461, "end_pos": 463, "annotation": "n_glycosylation_sequon" }, { "start_pos": 496, "end_pos": 498, "annotation": "n_glycosylation_sequon" }, { "start_pos": 688, "end_pos": 690, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JNM2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1090, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JNM2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JNM2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 591 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 177, "end_pos": 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"InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G29654", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G29654", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR47986", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47986", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47986:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47986:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07714", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07714", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001154275", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154275", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G29654", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G29654", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JNP7", "url": "https://www.uniprot.org/uniprotkb/F4JNP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNP7-1", "url": "https://www.uniprot.org/uniprotkb/F4JNP7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHFKIVGLRIFWFDPIYSRGQRINHDKVYPRHICLNFVSALIGRVTTKADVYSFGVILMELVTSKEALDKKRSDAEHHILKNRNIIDDVARLAIHCCAKELTQRPEMKYVVSTLTSLCDTWKPSEIVDNDREDTSVLELVKRWKEQEMEGSSSGIIVV", "length": 158, "header": "tr|F4JNP7-1|F4JNP7_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JNP7-1" }, "isoforms": [ { "isoform_ac": "F4JNP7-1", "url": "https://www.uniprot.org/uniprotkb/F4JNP7/entry", "sequence": { "sequence": "MHFKIVGLRIFWFDPIYSRGQRINHDKVYPRHICLNFVSALIGRVTTKADVYSFGVILMELVTSKEALDKKRSDAEHHILKNRNIIDDVARLAIHCCAKELTQRPEMKYVVSTLTSLCDTWKPSEIVDNDREDTSVLELVKRWKEQEMEGSSSGIIVV", "length": 158, "header": "tr|F4JNP7-1|F4JNP7_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JNP7-1" }, "locus": { "chromosome": "4", "start_pos": 14531601, "end_pos": 14532454, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G29654.1", "url": "https://www.ensemblgenomes.org/id/AT4G29654.1" }, { "database": "Ensembl Peptide", "id": "AT4G29654.1", "url": "https://www.ensemblgenomes.org/id/AT4G29654.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JNP7", "url": "https://www.uniprot.org/uniprotkb/F4JNP7" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JNP7", "url": "https://www.uniprot.org/uniprotkb/F4JNP7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G29654", 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JNS8-1", "uniprot_ac": "F4JNS8", "uniprot_id": "F4JNS8_ARATH", "mass": { "chemical_mass": 52199.0, "monoisotopic_mass": 52199.0 }, "refseq": { "ac": "NP_195298", "name": "Regulator of Vps4 activity in the MVB pathway protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_195298" }, "gene_names": [ { "name": "ISTL3", "type": "recommended", "evidence": [ { "id": "F4JNS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNS8" } ] }, { "name": "F8D20.240", "type": "synonym", "evidence": [ { "id": "NP_195298", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_195298" }, { "id": "F4JNS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNS8" } ] }, { "name": "F8D20_240", "type": "synonym", "evidence": [ 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNS8-1", "url": "https://www.uniprot.org/uniprotkb/F4JNS8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTAAEVASAQTKKLMKFSLSLFRRGFNSSKCKTAAKMAVARIKLIRNKRLVVVKQMRRDIAVLLQSGQDATARIRVEHVIREQNIQAANEIIELFCELIVSRLTIITKQKQCPVDLKEGIASLIFAAPRCSEIPELGDLRDIFAKKYGKDFVSAATDLRPSCGVNRMLIDKLSVRNPGGEYKLKIMKEIAKEFQVDWDTTETEQELLKPQEESIDGPRKFVSASSLPVNRAAINEPIDPTKAVPRSTSSMSINTHYHDTESAAEAATELAKQAVAAAQVASLLATRRDSSNKEFSVSSDHSTHQKDSQYMDHHHHHPGSRRQSRDSETSSYYAKPGAENRGMGRRHSYNNPGINESDYEEEYTNTEAEAKETMRRRHSYNPRSVPPPATSEIKFDESDYYEEETEPDEPSQGRVSSLPPNRAPPQAPQSGESRQDSSGHQVHPKLPDYDILAARFEAIRHSKGPLI", "length": 466, "header": "tr|F4JNS8-1|F4JNS8_ARATH Isoform 1 of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL3 PE=1 SV=1 CANONICAL=F4JNS8-1" }, "isoforms": [ { "isoform_ac": "F4JNS8-1", "url": "https://www.uniprot.org/uniprotkb/F4JNS8/entry", "sequence": { "sequence": "MTAAEVASAQTKKLMKFSLSLFRRGFNSSKCKTAAKMAVARIKLIRNKRLVVVKQMRRDIAVLLQSGQDATARIRVEHVIREQNIQAANEIIELFCELIVSRLTIITKQKQCPVDLKEGIASLIFAAPRCSEIPELGDLRDIFAKKYGKDFVSAATDLRPSCGVNRMLIDKLSVRNPGGEYKLKIMKEIAKEFQVDWDTTETEQELLKPQEESIDGPRKFVSASSLPVNRAAINEPIDPTKAVPRSTSSMSINTHYHDTESAAEAATELAKQAVAAAQVASLLATRRDSSNKEFSVSSDHSTHQKDSQYMDHHHHHPGSRRQSRDSETSSYYAKPGAENRGMGRRHSYNNPGINESDYEEEYTNTEAEAKETMRRRHSYNPRSVPPPATSEIKFDESDYYEEETEPDEPSQGRVSSLPPNRAPPQAPQSGESRQDSSGHQVHPKLPDYDILAARFEAIRHSKGPLI", "length": 466, "header": "tr|F4JNS8-1|F4JNS8_ARATH Isoform 1 of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL3 PE=1 SV=1 CANONICAL=F4JNS8-1" }, "locus": { "chromosome": "4", "start_pos": 16931003, "end_pos": 16933499, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G35730.1", "url": "https://www.ensemblgenomes.org/id/AT4G35730.1" }, { "database": "Ensembl Peptide", "id": "AT4G35730.1", "url": "https://www.ensemblgenomes.org/id/AT4G35730.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 225, "end_pos": 225, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JNS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNS8" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser225" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JNS8", "url": "https://www.uniprot.org/uniprotkb/F4JNS8" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "F4JNS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNS8" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4JNS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNS8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JNS8", "url": "https://www.uniprot.org/uniprotkb/F4JNS8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "F4JNS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNS8" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "pathway": [ { "id": "ath:AT4G35730", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G35730", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JNS8", "url": "https://www.uniprot.org/uniprotkb/F4JNS8" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JNS8", "url": "https://www.uniprot.org/uniprotkb/F4JNS8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F4JNS8", "url": "https://www.uniprot.org/uniprotkb/F4JNS8" } ], "pmid": "" }, { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "F4JNS8", "url": "https://www.uniprot.org/uniprotkb/F4JNS8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JNS8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 466, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JNS8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JNS8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 225 ], "sequon_annotation_sites": [ { "start_pos": 27, "end_pos": 29 }, { "start_pos": 354, "end_pos": 356 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JNX4-1", "uniprot_ac": "F4JNX4", "uniprot_id": "F4JNX4_ARATH", "mass": { "chemical_mass": 21979.0, "monoisotopic_mass": 21979.0 }, "refseq": { "ac": "NP_195324", "name": "Pathogenesis-related thaumatin superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_195324" }, "gene_names": [ { "name": "T19K4.130", "type": "synonym", "evidence": [ { "id": "NP_195324", "database": "RefSeq", "url": 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"https://www.uniprot.org/uniprotkb/F4JNX4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JNX4", "locus": {} } ], "crossref": [ { "id": "829756", "url": "https://www.ncbi.nlm.nih.gov/gene/829756", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037176", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037176", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G36000", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G36000", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CASGTNY", "url": "https://omabrowser.org/oma/group/CASGTNY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4JNX4", "url": "https://www.orthodb.org/?gene=F4JNX4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31048", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31048", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00314", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00314", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_195324", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_195324", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G36000", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G36000", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JNX4", "url": "https://www.uniprot.org/uniprotkb/F4JNX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNX4-1", "url": "https://www.uniprot.org/uniprotkb/F4JNX4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MECNGSGAEPPATLAEFTLGISGSLDFYDVSLVDGYNLPMIVEGSGLCPTTGCVTDLNQNCPTELKAKRSLACRSACEAFGRPEYCCSGAYGSPDSCKPSMYSQVFKSACPKSYSYAYDDATSTFTCSGADYTITFCPKLSSLKSSKEPPPEETGGESGSGTDSSTEIQQPIEEASLANSYYAAMAIGESTRNTASFLLLLIFGWISL", "length": 208, "header": "tr|F4JNX4-1|F4JNX4_ARATH Isoform 1 of Pathogenesis-related thaumatin superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JNX4-1" }, "isoforms": [ { "isoform_ac": "F4JNX4-1", "url": "https://www.uniprot.org/uniprotkb/F4JNX4/entry", "sequence": { "sequence": "MECNGSGAEPPATLAEFTLGISGSLDFYDVSLVDGYNLPMIVEGSGLCPTTGCVTDLNQNCPTELKAKRSLACRSACEAFGRPEYCCSGAYGSPDSCKPSMYSQVFKSACPKSYSYAYDDATSTFTCSGADYTITFCPKLSSLKSSKEPPPEETGGESGSGTDSSTEIQQPIEEASLANSYYAAMAIGESTRNTASFLLLLIFGWISL", "length": 208, "header": "tr|F4JNX4-1|F4JNX4_ARATH Isoform 1 of Pathogenesis-related thaumatin superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JNX4-1" }, "locus": { "chromosome": "4", 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{ "id": "826748", "url": "https://www.ncbi.nlm.nih.gov/gene/826748", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023395", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023395", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G11440", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G11440", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "STRYHEE", "url": "https://omabrowser.org/oma/group/STRYHEE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4JP07", "url": "https://www.orthodb.org/?gene=F4JP07", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45667", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45667", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00153", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00153", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G11440", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G11440", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JP07", "url": "https://www.uniprot.org/uniprotkb/F4JP07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JP07-1", "url": "https://www.uniprot.org/uniprotkb/F4JP07-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSSTKGSVKKSSIKHSCNLAEVKRKLSKISDHHSHVEYAYAFQRDNRERVDTRLSQILSRDALISAVDLLWDRSGFVSLKEGNFDYVDRDEVSSEKAKSQLSSTPQSRVRLLGVAEKMYSFDPYNRKSLLNQTDGSKSICGSCKGIGFPFEARWKTLYSWMEGVLPSSTRYHEEGAEIEKRENFEGCILNPVSSKEELASRNGDGCDCVFDAIGAKDQSTVIEPRSLLLATVAESVVDTRVSRSNDVNYLFLLYKDRCVNNKGVNMISSKCSTDCDAEVSSSGNNLDEDCLSIVENKQLLEKDRNDKETEVCLSSPETTTYAFAKQRHAFAGALAGISVSLCLHPLDTVKTMIQSCRLEEKSLCNTGRSIISERGFSGLYRGIASNIASSAPISALYTFTYETVKGTLLPLFPKEYCSLAHCLAGGSASIATSFIFTPSERIKQQMQVSSHYRNCWTALVGIIQKGGLLSLYAGWTAVLCRNIPHSIIKFYVYENMKQMVLPSPGPCGEMAQPTTLQTLTCGGLAGSAAAFFTTPFDVVKTRLQTQIPGSRNQHPSVYQTLQSIRRQEGLRGLYRGLIPRLVMYMSQGAIFFASYEFYKSVLSLAAAQPNTSALSGTKQKMEIALNR", "length": 628, "header": "tr|F4JP07-1|F4JP07_ARATH Isoform 1 of Mitochondrial substrate carrier family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JP07-1" }, "isoforms": [ { "isoform_ac": "F4JP07-1", "url": "https://www.uniprot.org/uniprotkb/F4JP07/entry", "sequence": { "sequence": "MSSSTKGSVKKSSIKHSCNLAEVKRKLSKISDHHSHVEYAYAFQRDNRERVDTRLSQILSRDALISAVDLLWDRSGFVSLKEGNFDYVDRDEVSSEKAKSQLSSTPQSRVRLLGVAEKMYSFDPYNRKSLLNQTDGSKSICGSCKGIGFPFEARWKTLYSWMEGVLPSSTRYHEEGAEIEKRENFEGCILNPVSSKEELASRNGDGCDCVFDAIGAKDQSTVIEPRSLLLATVAESVVDTRVSRSNDVNYLFLLYKDRCVNNKGVNMISSKCSTDCDAEVSSSGNNLDEDCLSIVENKQLLEKDRNDKETEVCLSSPETTTYAFAKQRHAFAGALAGISVSLCLHPLDTVKTMIQSCRLEEKSLCNTGRSIISERGFSGLYRGIASNIASSAPISALYTFTYETVKGTLLPLFPKEYCSLAHCLAGGSASIATSFIFTPSERIKQQMQVSSHYRNCWTALVGIIQKGGLLSLYAGWTAVLCRNIPHSIIKFYVYENMKQMVLPSPGPCGEMAQPTTLQTLTCGGLAGSAAAFFTTPFDVVKTRLQTQIPGSRNQHPSVYQTLQSIRRQEGLRGLYRGLIPRLVMYMSQGAIFFASYEFYKSVLSLAAAQPNTSALSGTKQKMEIALNR", "length": 628, "header": "tr|F4JP07-1|F4JP07_ARATH Isoform 1 of Mitochondrial substrate carrier family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JP07-1" }, "locus": { "chromosome": "4", "start_pos": 6955601, "end_pos": 6958895, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G11440.2", "url": "https://www.ensemblgenomes.org/id/AT4G11440.2" }, { "database": "Ensembl Peptide", "id": "AT4G11440.2", "url": "https://www.ensemblgenomes.org/id/AT4G11440.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 434, "end_pos": 434, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JP07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JP07" } ], "site_lbl": "Ser434" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JP07", "url": "https://www.uniprot.org/uniprotkb/F4JP07" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JP07", "url": "https://www.uniprot.org/uniprotkb/F4JP07" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G11440", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G11440", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "S-adenosyl-L-methionine transmembrane transporter activity", "id": "GO:0000095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000095", "evidence": [ { "database": "UniProtKB", "id": "F4JP07", "url": "https://www.uniprot.org/uniprotkb/F4JP07" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F4JP07", "url": "https://www.uniprot.org/uniprotkb/F4JP07" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JP07", "url": "https://www.uniprot.org/uniprotkb/F4JP07" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 611, "end_pos": 613, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 434 ], "sequon_annotation_sites": [ { "start_pos": 132, "end_pos": 134 }, { "start_pos": 611, "end_pos": 613 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JP70-1", "uniprot_ac": "F4JP70", "uniprot_id": "F4JP70_ARATH", "mass": { "chemical_mass": 36201.0, "monoisotopic_mass": 36201.0 }, "refseq": { "ac": "NP_193483", "name": "carboxyl-terminal proteinase-like protein (DUF239)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193483" }, "gene_names": [ { "name": "DUF239", "type": "recommended", "evidence": [ { "id": "F4JP70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP70" } ] }, { "name": "FCAALL.20", "type": "synonym", "evidence": [ { "id": "NP_193483", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193483" }, { "id": "F4JP70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP70" } ] } ], "protein_names": [ { "name": "Carboxyl-terminal proteinase-like protein (DUF239)", "type": "synonym", "evidence": [ { "id": "F4JP70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP70/entry#names_and_taxonomy" } ] }, { "name": "carboxyl-terminal proteinase-like protein (DUF239)", "type": "synonym", "evidence": [ { "id": "NP_193483", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193483" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JP70", "url": "https://www.uniprot.org/uniprotkb/F4JP70" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DUF239", "url": "https://www.uniprot.org/uniprotkb/F4JP70", "locus": {} } ], "crossref": [ { "id": "F4JP70", "url": "https://alphafold.ebi.ac.uk/entry/F4JP70", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G17505", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G17505", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827465", "url": "https://www.ncbi.nlm.nih.gov/gene/827465", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G17505", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G17505", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GRTIDCI", "url": "https://omabrowser.org/oma/group/GRTIDCI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31589", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31589", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31589:SF248", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31589:SF248", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03080", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03080", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_193483", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193483", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G17505", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G17505", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JP70", "url": "https://www.uniprot.org/uniprotkb/F4JP70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JP70-1", "url": "https://www.uniprot.org/uniprotkb/F4JP70-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHLQNSMILSLFFFFYLVATTHAKDDQFFECVDFYKQPSLQHPLLKHHKLQIMSSPRRSTICPRGMVPIQKFRNNANNLNAQVAVNHATLDTKFASEKYHGASAVLSIHNPTFSGKATRSNIWIEKGAPQGLNCIIFGWAIEPKFYGDNKTHFTTYWSNDGFYKTGCYNTVCKGFIQHFSDLYPGKPFDQVSTYGGRQVAANLSIIRDGPTGNWMLMNSGALVGYWPKELFSHLGLGADTIRYGGLTVGGAPMGNGKFPDKGNDLSKSSYFKDMKYVDANFKNNPISELEMIVDTPKPYCFRLNYLKDQQTITYGGPGPCPY", "length": 322, "header": "tr|F4JP70-1|F4JP70_ARATH Isoform 1 of Carboxyl-terminal proteinase-like protein (DUF239) OS=Arabidopsis thaliana OX=3702 GN=DUF239 PE=1 SV=1 CANONICAL=F4JP70-1" }, "isoforms": [ { "isoform_ac": "F4JP70-1", "url": "https://www.uniprot.org/uniprotkb/F4JP70/entry", "sequence": { "sequence": "MHLQNSMILSLFFFFYLVATTHAKDDQFFECVDFYKQPSLQHPLLKHHKLQIMSSPRRSTICPRGMVPIQKFRNNANNLNAQVAVNHATLDTKFASEKYHGASAVLSIHNPTFSGKATRSNIWIEKGAPQGLNCIIFGWAIEPKFYGDNKTHFTTYWSNDGFYKTGCYNTVCKGFIQHFSDLYPGKPFDQVSTYGGRQVAANLSIIRDGPTGNWMLMNSGALVGYWPKELFSHLGLGADTIRYGGLTVGGAPMGNGKFPDKGNDLSKSSYFKDMKYVDANFKNNPISELEMIVDTPKPYCFRLNYLKDQQTITYGGPGPCPY", "length": 322, "header": "tr|F4JP70-1|F4JP70_ARATH Isoform 1 of Carboxyl-terminal proteinase-like protein (DUF239) OS=Arabidopsis thaliana OX=3702 GN=DUF239 PE=1 SV=1 CANONICAL=F4JP70-1" }, "locus": { "chromosome": "4", "start_pos": 9764376, "end_pos": 9766315, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G17505.1", "url": "https://www.ensemblgenomes.org/id/AT4G17505.1" }, { "database": "Ensembl Peptide", "id": "AT4G17505.1", "url": "https://www.ensemblgenomes.org/id/AT4G17505.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, 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Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JP70", "url": "https://www.uniprot.org/uniprotkb/F4JP70" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JP70", "url": "https://www.uniprot.org/uniprotkb/F4JP70" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G17505", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G17505", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4JP70", "url": "https://www.uniprot.org/uniprotkb/F4JP70" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JP70-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 322, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JP70-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JP70" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JP70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP70" }, { "id": "PS52045", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52045" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neprosin PEP catalytic", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 321, "start_aa": "Ala", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 149, "end_pos": 151 }, { "start_pos": 202, "end_pos": 204 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JP81-1", "uniprot_ac": "F4JP81", "uniprot_id": "F4JP81_ARATH", "mass": { "chemical_mass": 27946.0, "monoisotopic_mass": 27946.0 }, "refseq": { "ac": "NP_193492", "name": "Bax inhibitor-1 family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193492" }, "gene_names": [ { "name": "DL4825C", "type": "recommended", "evidence": [ { "id": "F4JP81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP81" } ] }, { "name": "DL4825C", "type": "synonym", "evidence": [ { "id": "NP_193492", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193492" } ] }, { "name": "FCAALL.46", "type": "synonym", "evidence": [ { "id": "NP_193492", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193492" }, { "id": "F4JP81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP81" } ] } ], "protein_names": [ { "name": "Bax inhibitor-1 family protein", "type": "synonym", "evidence": [ { "id": "NP_193492", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193492" }, { "id": "F4JP81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP81/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JP81", "url": "https://www.uniprot.org/uniprotkb/F4JP81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DL4825C", "url": "https://www.uniprot.org/uniprotkb/F4JP81", "locus": {} } ], "crossref": [ { "id": "F4JP81", "url": "https://alphafold.ebi.ac.uk/entry/F4JP81", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G17580", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G17580", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd10430", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10430", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "827475", "url": "https://www.ncbi.nlm.nih.gov/gene/827475", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G17580", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G17580", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ACMGNIA", "url": "https://omabrowser.org/oma/group/ACMGNIA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23291", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23291", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23291:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23291:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01027", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01027", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_193492", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193492", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G17580", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G17580", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JP81", "url": "https://www.uniprot.org/uniprotkb/F4JP81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JP81-1", "url": "https://www.uniprot.org/uniprotkb/F4JP81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEANGTIWSHDYLRNSHEFSPAVQNHLKRFCIVLGSHRCVIDLYLTLFFALLASAIGAYIHMVWNIGGNVSTLGFSGIMIWLRFTLYEPNMLYLLFLFALLKGASVGPMIMLVIDFDSSVLVTAFVGTAVAFVCFSAAAMLATRREYLYHGASLACCMSILWWVQIASSIFGGSTTVVKFELYFGLLIFVGYIVVDTQMITEKAHHGDMDYVQHSFTFFTDFASLFVQILVLNMFRKMKKGRKDRRN", "length": 247, "header": "tr|F4JP81-1|F4JP81_ARATH Isoform 1 of Bax inhibitor-1 family protein OS=Arabidopsis thaliana OX=3702 GN=DL4825C PE=3 SV=1 CANONICAL=F4JP81-1" }, "isoforms": [ { "isoform_ac": "F4JP81-1", "url": "https://www.uniprot.org/uniprotkb/F4JP81/entry", "sequence": { "sequence": "MEANGTIWSHDYLRNSHEFSPAVQNHLKRFCIVLGSHRCVIDLYLTLFFALLASAIGAYIHMVWNIGGNVSTLGFSGIMIWLRFTLYEPNMLYLLFLFALLKGASVGPMIMLVIDFDSSVLVTAFVGTAVAFVCFSAAAMLATRREYLYHGASLACCMSILWWVQIASSIFGGSTTVVKFELYFGLLIFVGYIVVDTQMITEKAHHGDMDYVQHSFTFFTDFASLFVQILVLNMFRKMKKGRKDRRN", "length": 247, "header": "tr|F4JP81-1|F4JP81_ARATH Isoform 1 of Bax inhibitor-1 family protein OS=Arabidopsis thaliana OX=3702 GN=DL4825C PE=3 SV=1 CANONICAL=F4JP81-1" }, "locus": { "chromosome": "4", "start_pos": 9789789, "end_pos": 9791145, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G17580.1", "url": "https://www.ensemblgenomes.org/id/AT4G17580.1" }, { "database": "Ensembl Peptide", "id": "AT4G17580.1", "url": "https://www.ensemblgenomes.org/id/AT4G17580.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner 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superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JPD5-1" }, "locus": { "chromosome": "4", "start_pos": 12417553, "end_pos": 12418893, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G23882.1", "url": "https://www.ensemblgenomes.org/id/AT4G23882.1" }, { "database": "Ensembl Peptide", "id": "AT4G23882.1", "url": "https://www.ensemblgenomes.org/id/AT4G23882.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 59, "end_pos": 59, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JPD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JPD5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr59" }, { "start_pos": 63, "end_pos": 63, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JPD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JPD5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser63" }, { "start_pos": 64, "end_pos": 64, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JPD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JPD5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser64" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JPD5", "url": "https://www.uniprot.org/uniprotkb/F4JPD5" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4JPD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JPD5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JPD5", "url": "https://www.uniprot.org/uniprotkb/F4JPD5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G23882", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G23882", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": 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"AF-F4JPD5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 284, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JPD5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JPD5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JPD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPD5" }, { "id": "PS50846", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50846" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HMA", "eco_id": "ECO_0000259", "start_pos": 77, "end_pos": 141, "start_aa": "Val", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 59, 63, 64 ], "sequon_annotation_sites": [ { 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Classification", "Other" ] }, { "id": "AT4G36100", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G36100", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JPL6", "url": "https://www.uniprot.org/uniprotkb/F4JPL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JPL6-1", "url": "https://www.uniprot.org/uniprotkb/F4JPL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEESINQNPEAMEALISNLFGNISSLKSAYIELQSAHTPYDPEKIQAADKVVISELKNLSEMKHFYRENNPKPVCVSPQDSRLAAEIQEQQSLLKTYEVMVKRSLMEQSLDAYDEKEKEMMMMIGSINRTELLSVLKAKGTNIDKLRFAIMYLISLESVNQTEVEAVEAALREAKIDTSTFQYVKKIKSLNVSLAANSASKSHIALWPVYKRGDRAGVKNLLSSDEKLAVARAVEC", "length": 236, "header": "tr|F4JPL6-1|F4JPL6_ARATH Isoform 1 of Sec1/munc18-like (SM) proteins superfamily OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JPL6-1" }, "isoforms": [ { "isoform_ac": "F4JPL6-1", "url": 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OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JPL7-1" }, "locus": { "chromosome": "4", "start_pos": 17083841, "end_pos": 17085184, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G36105.1", "url": "https://www.ensemblgenomes.org/id/AT4G36105.1" }, { "database": "Ensembl Peptide", "id": "AT4G36105.1", "url": "https://www.ensemblgenomes.org/id/AT4G36105.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 43, "end_pos": 43, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JPL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JPL7" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr43" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": 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"https://www.uniprot.org/uniprotkb/F4JPR2/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_001320152", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001320152" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JPR2", "url": "https://www.uniprot.org/uniprotkb/F4JPR2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "AP22.52", "url": "https://www.uniprot.org/uniprotkb/F4JPR2", "locus": {} } ], "crossref": [ { "id": "F4JPR2", "url": "https://alphafold.ebi.ac.uk/entry/F4JPR2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G36510", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G36510", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "829803", "url": "https://www.ncbi.nlm.nih.gov/gene/829803", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G36510", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G36510", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001320152", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001320152", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G36510", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G36510", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JPR2", "url": "https://www.uniprot.org/uniprotkb/F4JPR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JPR2-1", "url": "https://www.uniprot.org/uniprotkb/F4JPR2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMRENFQVMRELFEFAALKTGNFLLTQINGQFLKINALMAGGVLVGHIECGEWKWTKLLKN", "length": 61, "header": "tr|F4JPR2-1|F4JPR2_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AP22.52 PE=4 SV=1 CANONICAL=F4JPR2-1" }, "isoforms": [ { "isoform_ac": "F4JPR2-1", "url": "https://www.uniprot.org/uniprotkb/F4JPR2/entry", "sequence": { "sequence": "MMRENFQVMRELFEFAALKTGNFLLTQINGQFLKINALMAGGVLVGHIECGEWKWTKLLKN", "length": 61, "header": "tr|F4JPR2-1|F4JPR2_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AP22.52 PE=4 SV=1 CANONICAL=F4JPR2-1" }, "locus": { "chromosome": "4", "start_pos": 17228773, "end_pos": 17229498, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G36510.1", "url": "https://www.ensemblgenomes.org/id/AT4G36510.1" }, { "database": "Ensembl Peptide", "id": "AT4G36510.1", "url": "https://www.ensemblgenomes.org/id/AT4G36510.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De 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Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JPR2", "url": "https://www.uniprot.org/uniprotkb/F4JPR2" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JPR2", "url": "https://www.uniprot.org/uniprotkb/F4JPR2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G36510", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G36510", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JPR2", "url": "https://www.uniprot.org/uniprotkb/F4JPR2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], 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"url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G11745", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR24414", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24414", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24414:SF82", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24414:SF82", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_849360", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_849360", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G11745", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G11745", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JPR8", "url": 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"length": 1013, "header": "tr|F4JPS4-1|F4JPS4_ARATH Isoform 1 of Calcineurin-like metallo-phosphoesterase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JPS4-1" }, "locus": { "chromosome": "4", "start_pos": 7093488, "end_pos": 7099855, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G11800.1", "url": "https://www.ensemblgenomes.org/id/AT4G11800.1" }, { "database": "Ensembl Peptide", "id": "AT4G11800.1", "url": "https://www.ensemblgenomes.org/id/AT4G11800.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 974, "end_pos": 974, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JPS4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JPS4" } ], "site_lbl": "Tyr974" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, 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J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JPS4", "url": "https://www.uniprot.org/uniprotkb/F4JPS4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JPS4", "url": "https://www.uniprot.org/uniprotkb/F4JPS4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G11800", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G11800", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JPS4", "url": "https://www.uniprot.org/uniprotkb/F4JPS4" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F4JPS4", 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"Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21688", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21688", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_194801", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194801", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G30720", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G30720", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JQE2", "url": "https://www.uniprot.org/uniprotkb/F4JQE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQE2-1", "url": "https://www.uniprot.org/uniprotkb/F4JQE2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLSQTNFLSSSLLSSSHDLRIPYSRAVLSYPRIQTHRILCAAKRTGKRRYPSERRKLRTEQKEAVAKVKNKLEGVWRLSKLGVPVGDDPGKDFLGISEGLLQAIAKVIEFPVASMLPEEAFSVIRKSFDARKILKEAKFVYTVDLDVKTLLELEPRAHDFIFRLEPKIGLIEHVPTEKSVSGDLISVVNDCKRINSETASGEYEPQIINGSGDPHHHGGGRSKPKIAVVGGGPSGLFAALVLAEFGADVTLIERGQAVEERGRDIGALVVRKILDMESNFCFGEGGAGTWSDGKLVTRIGKNSATVLAVLKTLVRFGAPDNILVNGKPHLGTDKLVPLLRNFRHYLQSAGVTIKFGTRVDDLLVEDSRVVGVRVSDSTNQLQTTSQNLKVDAVVLAVGHSARDTYEMLHSRNVELIPKDFAVGLRIEHPQELINSIQYSDLANEVLKGRGKVPVADYKVVQYVNDKTEDLSQSSSKRSCYSFCMCPGGQVVLTSTNPTELCINGMSFSRRSSKWANAALVVTVSAKDFDVLNLKGPLAGIEFQREFERRAAIMGGGDFTVPVQRVTDFLQNKLSETPLPPSSYRLGVKSANLHELFPAHITEALRESISMFEKELPGFISEEALLHGVETRTSSPVRIPRSNETYESTSLKGLYPVGEGAGYAGGIVSAAVDGMFSGFAVAKSFDLFDGTIESVIGKAQGAGLVKY", "length": 707, "header": "tr|F4JQE2-1|F4JQE2_ARATH Isoform 1 of FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana OX=3702 GN=PDE327 PE=1 SV=1 CANONICAL=F4JQE2-1" }, "isoforms": [ { "isoform_ac": "F4JQE2-1", "url": "https://www.uniprot.org/uniprotkb/F4JQE2/entry", 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"strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G30720.1", "url": "https://www.ensemblgenomes.org/id/AT4G30720.1" }, { "database": "Ensembl Peptide", "id": "AT4G30720.1", "url": "https://www.ensemblgenomes.org/id/AT4G30720.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 143, "end_pos": 143, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JQE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQE2" } ], "site_lbl": "Thr143" }, { "start_pos": 575, "end_pos": 575, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JQE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQE2" } ], "site_lbl": "Ser575" }, { "start_pos": 577, "end_pos": 577, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JQE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQE2" } ], "site_lbl": "Thr577" }, { "start_pos": 582, "end_pos": 582, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JQE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQE2" } ], "site_lbl": "Ser582" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, 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"Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JQL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQL6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr83" }, { "start_pos": 84, "end_pos": 84, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JQL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQL6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser84" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, 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Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JQL6", "url": "https://www.uniprot.org/uniprotkb/F4JQL6" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": 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"date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JQR9-1", "uniprot_ac": "F4JQR9", "uniprot_id": "F4JQR9_ARATH", "mass": { "chemical_mass": 83590.0, "monoisotopic_mass": 83590.0 }, "refseq": { "ac": "NP_193549", "name": "Serine/Threonine-kinase, putative (DUF1296)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193549" }, "gene_names": [ { "name": "F15J5.120", "type": "synonym", "evidence": [ { "id": "NP_193549", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193549" }, { "id": "F4JQR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQR9" } ] }, { "name": "F15J5_120", "type": "synonym", "evidence": [ { "id": "NP_193549", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193549" }, { "id": "F4JQR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQR9" } ] } ], "protein_names": [ { "name": "Serine/Threonine-kinase, putative (DUF1296)", 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"https://www.uniprot.org/uniprotkb/F4JQR9/entry", "sequence": { "sequence": "MGGGGGSVSNANGGVPASSRKVIQDLKEIVECSELEIYAMLVECDMNPDEAVNRLLSQDTFHEVKSKREKKKETKDHADSWTRNVPNRGARSGNDSYNTSRGGRNKYKSNETGKIQGVPVNRRENGARNHLAGSSASSGLLGRLPGLLRRQPPSNSDLPSSKVKKAPTTPSDAVTLSSLPFPAYQSAWASANPGQRTMAEIVKMGRPNLQKNVALPRSSEAQESSSKAPLKDECPSIEKQDVSYLSSSVLKPSAESKISSDQFSESQHLDETLLDDIHRETKTYPTGSPPDVDHNPLASVSSRNLVDDESRDSLVCDDENNKAERHSYEENQDEDVSTSVATGFQQLTIYNEEEQEALPKEEKHAVIIPNHLQVHTSECLHLMFGCFSSGIGSGQPSALNDNLEEPLVAEDDSSFRHPDTNFYGEEEAEQPRNAVTNEQVSYQIDSSYRFENNQLFHPPSETNPQRQNLDTYPNIMQQGYTSSLPNTLLPSGIQDGRESNLHYSPFTTLYNTEISMAEALRAASISPQNAIPSAGQQAATLAQHLALNPYSHQPEMPLGHYGNLISYPFMAQCYNPFMLSAFQQVFPTGNHQSLVDMLMQYKTQTTAPPVPPPSAYGFGGGAVSSNNFPLNPTSAANSYEDVLSSQFNESNHLASSLQQQNEKTTAWHQGQQANSRVVPGSGYYSYPGHQNQQPPGFRQAQQLQHQQQSSQQQQQQQHYGGHGYVSPYHSQAVMSLEHLHHQYQQQQNARDASKQSQQ", "length": 758, "header": "tr|F4JQR9-1|F4JQR9_ARATH Isoform 1 of Serine/Threonine-kinase, putative (DUF1296) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JQR9-1" }, "locus": { "chromosome": "4", "start_pos": 10050211, "end_pos": 10054031, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G18150.1", "url": "https://www.ensemblgenomes.org/id/AT4G18150.1" }, { "database": "Ensembl Peptide", "id": "AT4G18150.1", "url": "https://www.ensemblgenomes.org/id/AT4G18150.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 66, "end_pos": 66, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JQR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQR9" } ], "site_lbl": "Ser66" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JQR9", "url": "https://www.uniprot.org/uniprotkb/F4JQR9" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JQR9", "url": "https://www.uniprot.org/uniprotkb/F4JQR9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G18150", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G18150", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JQR9", "url": "https://www.uniprot.org/uniprotkb/F4JQR9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 648, "end_pos": 650, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" }, { "start_pos": 98, "end_pos": 100, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JQR9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 758, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JQR9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JQR9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JQR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQR9" }, { "id": "PF06972", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06972" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GBF-interacting protein 1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 73, "start_aa": "Val", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 66 ], "sequon_annotation_sites": [ { "start_pos": 110, "end_pos": 112 }, { "start_pos": 648, "end_pos": 650 }, { "start_pos": 94, "end_pos": 96 }, { "start_pos": 98, "end_pos": 100 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JQS2-1", "uniprot_ac": "F4JQS2", "uniprot_id": "F4JQS2_ARATH", "mass": { "chemical_mass": 45966.0, "monoisotopic_mass": 45966.0 }, "refseq": {}, "gene_names": [ { "name": "T9A21.20", "type": "synonym", "evidence": [ { "id": "F4JQS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQS2" } ] }, { "name": "T9A21_20", "type": "synonym", "evidence": [ { "id": "F4JQS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQS2" } ] } ], "protein_names": [ { "name": "Pectin lyase-like superfamily protein", "type": "synonym", "evidence": [ { "id": "F4JQS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQS2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JQS2", "url": "https://www.uniprot.org/uniprotkb/F4JQS2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JQS2", "locus": {} } ], "crossref": [ { "id": "F4JQS2", "url": "https://alphafold.ebi.ac.uk/entry/F4JQS2", "database": "AlphaFoldDB", "categories": [] }, { "id": "827543", "url": "https://www.ncbi.nlm.nih.gov/gene/827543", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011050", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011050", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012334", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012334", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G18180", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G18180", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FVNNKNM", "url": "https://omabrowser.org/oma/group/FVNNKNM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4JQS2", "url": "https://www.orthodb.org/?gene=F4JQS2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31375", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31375", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00295", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00295", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G18180", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G18180", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JQS2", "url": "https://www.uniprot.org/uniprotkb/F4JQS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQS2-1", "url": "https://www.uniprot.org/uniprotkb/F4JQS2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYIEMENFRYLKFFFFFIFVILSPSEAGNIVDKSSVFLVDVRSFGARANDHRDHTKAFVAAWDKACKSSSSSVNLIIPRGEFSVGSLRFSGPCTNVSNLTVRVKGHLKASTDLSKYRSGGGWIQFGWINGLTLTGGGTFDGQGALAWPFNNCTSDSNCKLLPTSLKFVGMNRTVVRRISSVNSKFFHIALVECRDFKGTRLNITAPSDSPNTDGIHIERSSNVYFSRSHIATGDDCVSIGQGNSQITITSIKCGPGHGISVGSLGRYPNEKDVNGLVVKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMNNVTNPIIIDQSYCPFSSCISNVPSKVELSEIYFKNIRGTSSSLVAVQLHCSRGMPCKKVYLENVHLDLSSSDGGRKQSSNRGNEAVSSSCRNVRANYIGTQIPPPCH", "length": 422, "header": "tr|F4JQS2-1|F4JQS2_ARATH Isoform 1 of Pectin lyase-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JQS2-1" }, "isoforms": [ { "isoform_ac": "F4JQS2-1", "url": "https://www.uniprot.org/uniprotkb/F4JQS2/entry", "sequence": { "sequence": "MYIEMENFRYLKFFFFFIFVILSPSEAGNIVDKSSVFLVDVRSFGARANDHRDHTKAFVAAWDKACKSSSSSVNLIIPRGEFSVGSLRFSGPCTNVSNLTVRVKGHLKASTDLSKYRSGGGWIQFGWINGLTLTGGGTFDGQGALAWPFNNCTSDSNCKLLPTSLKFVGMNRTVVRRISSVNSKFFHIALVECRDFKGTRLNITAPSDSPNTDGIHIERSSNVYFSRSHIATGDDCVSIGQGNSQITITSIKCGPGHGISVGSLGRYPNEKDVNGLVVKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMNNVTNPIIIDQSYCPFSSCISNVPSKVELSEIYFKNIRGTSSSLVAVQLHCSRGMPCKKVYLENVHLDLSSSDGGRKQSSNRGNEAVSSSCRNVRANYIGTQIPPPCH", "length": 422, "header": "tr|F4JQS2-1|F4JQS2_ARATH Isoform 1 of Pectin lyase-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JQS2-1" }, "locus": { "chromosome": "4", "start_pos": 10065291, "end_pos": 10067521, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G18180.1", "url": "https://www.ensemblgenomes.org/id/AT4G18180.1" }, { "database": "Ensembl Peptide", "id": "AT4G18180.1", "url": "https://www.ensemblgenomes.org/id/AT4G18180.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia 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"AT4G18310", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G18310", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JQT8", "url": "https://www.uniprot.org/uniprotkb/F4JQT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQT8-1", "url": "https://www.uniprot.org/uniprotkb/F4JQT8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSSHLSQICFSCRDSCENLPQDLFKRSTDLLNLNVAEAYLKEARFYDPVRERLHNRRYDQNLEEARFLGSTLGWVVMSDSIVGIPREDHQTFLYNPFTSQRYELPPLTIEDPHLKSVLRYGVLTGDPREDNTYACLVADSLHANLMAIGNTHPPSLHLYYVAKRNGEWDQNWSVTRIPTHNLPVVGSTIDSISPSADKISIIGWGHSFDFTFQSQDWNVTNINYTMEWNPFHGQSFDQIKHRLQIDPQTLDIIGTKTDRERVKNRIWFVINQIISHIDGVWVEVRA", "length": 287, "header": "tr|F4JQT8-1|F4JQT8_ARATH Isoform 1 of KIB1-4 beta-propeller domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JQT8-1" }, "isoforms": [ { "isoform_ac": "F4JQT8-1", "url": "https://www.uniprot.org/uniprotkb/F4JQT8/entry", "sequence": { "sequence": "MLSSHLSQICFSCRDSCENLPQDLFKRSTDLLNLNVAEAYLKEARFYDPVRERLHNRRYDQNLEEARFLGSTLGWVVMSDSIVGIPREDHQTFLYNPFTSQRYELPPLTIEDPHLKSVLRYGVLTGDPREDNTYACLVADSLHANLMAIGNTHPPSLHLYYVAKRNGEWDQNWSVTRIPTHNLPVVGSTIDSISPSADKISIIGWGHSFDFTFQSQDWNVTNINYTMEWNPFHGQSFDQIKHRLQIDPQTLDIIGTKTDRERVKNRIWFVINQIISHIDGVWVEVRA", "length": 287, "header": "tr|F4JQT8-1|F4JQT8_ARATH Isoform 1 of KIB1-4 beta-propeller domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JQT8-1" }, "locus": { "chromosome": "4", "start_pos": 10122075, "end_pos": 10122990, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G18310.1", "url": "https://www.ensemblgenomes.org/id/AT4G18310.1" }, { "database": "Ensembl Peptide", "id": "AT4G18310.1", "url": "https://www.ensemblgenomes.org/id/AT4G18310.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JQT8", "url": "https://www.uniprot.org/uniprotkb/F4JQT8" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JQT8", "url": "https://www.uniprot.org/uniprotkb/F4JQT8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G18310", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G18310", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], 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"Protein Classification" ] }, { "id": "IPR010920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G18372", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G18372", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FYCIDKQ", "url": "https://omabrowser.org/oma/group/FYCIDKQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4JQU9", "url": "https://www.orthodb.org/?gene=F4JQU9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10701", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10701", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10701:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10701:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01423", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01423", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001328000", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001328000", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G18372", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G18372", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JQU9", "url": "https://www.uniprot.org/uniprotkb/F4JQU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQU9-1", "url": "https://www.uniprot.org/uniprotkb/F4JQU9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"https://www.uniprot.org/uniprotkb/F4JR41-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVSLSVMSFNLHDDLPEESPNSWLKRKDLCLTVITSYSPIVLCTQQGVKSQLDYLQQGLPAYDQFGISRTGPGDANDEHCTIFFNKEKVELLEGGTFWLSESPSVPGSTAWGSAVPCIATWATFQLKGAEPPGFSFQIVNTNLDEISPRARRRSALLTWQHIASLPPTLPVVYCGGFNTQKESTTGRFLLGRSREHGVVGDMRDAWPSARVRKNVALIRTYHDFKGDKQGTVEFLKLIFRALCLCWDRQTQDLHTDWILYRGRSIVPVMCEIVNDKIDDLYPSSHYPVFAEFMLPRSVRMLEPTPPVSAPAQEES", "length": 316, "header": "tr|F4JR41-1|F4JR41_ARATH Isoform 1 of DNAse I-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JR41-1" }, "isoforms": [ { "isoform_ac": "F4JR41-1", "url": "https://www.uniprot.org/uniprotkb/F4JR41/entry", "sequence": { "sequence": "MSVSLSVMSFNLHDDLPEESPNSWLKRKDLCLTVITSYSPIVLCTQQGVKSQLDYLQQGLPAYDQFGISRTGPGDANDEHCTIFFNKEKVELLEGGTFWLSESPSVPGSTAWGSAVPCIATWATFQLKGAEPPGFSFQIVNTNLDEISPRARRRSALLTWQHIASLPPTLPVVYCGGFNTQKESTTGRFLLGRSREHGVVGDMRDAWPSARVRKNVALIRTYHDFKGDKQGTVEFLKLIFRALCLCWDRQTQDLHTDWILYRGRSIVPVMCEIVNDKIDDLYPSSHYPVFAEFMLPRSVRMLEPTPPVSAPAQEES", "length": 316, "header": "tr|F4JR41-1|F4JR41_ARATH Isoform 1 of DNAse I-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JR41-1" }, "locus": { "chromosome": "4", "start_pos": 15039426, "end_pos": 15042380, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G30900.3", "url": "https://www.ensemblgenomes.org/id/AT4G30900.3" }, { "database": "Ensembl Peptide", "id": "AT4G30900.3", "url": "https://www.ensemblgenomes.org/id/AT4G30900.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 305, "start_aa": "Thr", "end_pos": 305, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr305", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JR41", "url": "https://www.uniprot.org/uniprotkb/F4JR41" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JR41", "url": "https://www.uniprot.org/uniprotkb/F4JR41" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G30900", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G30900", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JR41", "url": "https://www.uniprot.org/uniprotkb/F4JR41" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "3'-5'-RNA exonuclease activity", "id": "GO:0000175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000175", "evidence": [ { "database": "UniProtKB", "id": "F4JR41", "url": "https://www.uniprot.org/uniprotkb/F4JR41" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JR41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JR41" }, { "id": "PF03372", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Endonuclease/exonuclease/phosphatase", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 274, "start_aa": "Met", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 305 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": 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"tr|F4JR86-1|F4JR86_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JR86-1" }, "isoforms": [ { "isoform_ac": "F4JR86-1", "url": "https://www.uniprot.org/uniprotkb/F4JR86/entry", "sequence": { "sequence": "MLSDFSDIGFSSSFRIITLADGFGSVRLARGKIDEDSSEIIVALRQTERETNVMEDDVDDSSSTKMSPFWRILQSHDDGASIRRGAAIDDGGGDTERED", "length": 99, "header": "tr|F4JR86-1|F4JR86_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JR86-1" }, "locus": { "chromosome": "4", "start_pos": 17447713, "end_pos": 17448244, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G37022.1", "url": "https://www.ensemblgenomes.org/id/AT4G37022.1" }, { "database": "Ensembl Peptide", "id": "AT4G37022.1", "url": "https://www.ensemblgenomes.org/id/AT4G37022.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JR86", "url": "https://www.uniprot.org/uniprotkb/F4JR86" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JR86", "url": "https://www.uniprot.org/uniprotkb/F4JR86" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G37022", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G37022", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JR86", "url": "https://www.uniprot.org/uniprotkb/F4JR86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JR86-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 99, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JR86-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JR86" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JRD9-1", "uniprot_ac": "F4JRD9", "uniprot_id": "F4JRD9_ARATH", "mass": { "chemical_mass": 92858.0, "monoisotopic_mass": 92858.0 }, "refseq": { "ac": "NP_193001", "name": "RNA recognition motif (RRM)-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193001" }, "gene_names": [ { "name": "ATSPEN2", "type": "recommended", "evidence": [ { "id": "F4JRD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JRD9" } ] }, { "name": "T1P17.230", "type": "synonym", "evidence": [ { "id": "NP_193001", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193001" }, { "id": "F4JRD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JRD9" } ] }, { "name": "T1P17_230", "type": "synonym", "evidence": [ { "id": "NP_193001", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193001" }, { "id": "F4JRD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JRD9" } ] } ], "protein_names": [ { "name": "RNA recognition motif (RRM)-containing protein", "type": "synonym", "evidence": [ { "id": "NP_193001", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193001" }, { "id": "F4JRD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JRD9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JRD9", "url": "https://www.uniprot.org/uniprotkb/F4JRD9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ATSPEN2", "url": "https://www.uniprot.org/uniprotkb/F4JRD9", "locus": {} } ], "crossref": [ { "id": "F4JRD9", "url": "https://alphafold.ebi.ac.uk/entry/F4JRD9", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G12640", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G12640", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00590", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00590", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21546", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21546", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "826877", "url": "https://www.ncbi.nlm.nih.gov/gene/826877", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G12640", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G12640", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F4JRD9", "url": "https://oglcnac.org/atlas/detail/F4JRD9", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "WHNIPFE", "url": "https://omabrowser.org/oma/group/WHNIPFE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23189", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23189", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07744", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07744", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_193001", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193001", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G12640", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G12640", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JRD9", "url": "https://www.uniprot.org/uniprotkb/F4JRD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JRD9-1", "url": "https://www.uniprot.org/uniprotkb/F4JRD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SU22", "url": "https://www.uniprot.org/uniprotkb/Q9SU22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SU22-1", "url": "https://www.uniprot.org/uniprotkb/Q9SU22-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSRGRERMMMKEDGRGRNPPSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEFAKAEKSSTGSRTDDIYRHDEQRSAARGSSFVQRDSRMRYESPDTYSKSKMNDRNAEPSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQGKLFGNPRVHICFAKSEPSSSGSGRGPSGRSLSPPYRSVDRLGSSEGYLQDRNYGSISRIPSVREPHYIEDRDLEDSEGYIFNRKRDSSSDGGPAYGRSRSTHRFPQDMHEYHGSPGEMGTSFRDNPHRFQTRSSEYEEPWDLPEDDYYYQEIKRLKTRSSQPERQLPGHQLSGIEQERRPFSRASADFSPKDAFERNYEAGQLRYNQTVEQPLNLAIRNGDKSSLREPHEELMGGYPLPSVVPERKRYTPELNRPSLKDWNWEGTIAKGGNPICRAKCFPVGKVMDMMLPEFLDCTARTGLDMLAKHYYQSSKAWVVFFVPGSDADIVFYDEFMHYLEEKQRAAVSKLDDTTTLFLVPPSDFSEKVLKVPGKLSISGVILRLECGGSGSGGPVQQQGERKDTDLLTYYGETSYSEASGAFPDVGNPRIPGPTAFLRSAGRDNQSASMDPYVEDKHDQLSHRYSGSDWPPRDTNPRSSPFIDHTVQKHSGFVPGKQQNADLSRYHDTETPVPAGFQPEQLTHLASSLPRQQQQVQNTPNQPERYAPEGRASFSHLQHAQTPSIPQLVTPQNQNVQIQSSNSQQQEETEANPQKRLQATLQLAAALLQQIQQAKPS", "length": 823, "header": "tr|F4JRD9-1|F4JRD9_ARATH Isoform 1 of RNA recognition motif (RRM)-containing protein OS=Arabidopsis thaliana OX=3702 GN=ATSPEN2 PE=1 SV=1 CANONICAL=F4JRD9-1" }, "isoforms": [ { "isoform_ac": "F4JRD9-1", "url": "https://www.uniprot.org/uniprotkb/F4JRD9/entry", "sequence": { "sequence": "MSSRGRERMMMKEDGRGRNPPSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEFAKAEKSSTGSRTDDIYRHDEQRSAARGSSFVQRDSRMRYESPDTYSKSKMNDRNAEPSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQGKLFGNPRVHICFAKSEPSSSGSGRGPSGRSLSPPYRSVDRLGSSEGYLQDRNYGSISRIPSVREPHYIEDRDLEDSEGYIFNRKRDSSSDGGPAYGRSRSTHRFPQDMHEYHGSPGEMGTSFRDNPHRFQTRSSEYEEPWDLPEDDYYYQEIKRLKTRSSQPERQLPGHQLSGIEQERRPFSRASADFSPKDAFERNYEAGQLRYNQTVEQPLNLAIRNGDKSSLREPHEELMGGYPLPSVVPERKRYTPELNRPSLKDWNWEGTIAKGGNPICRAKCFPVGKVMDMMLPEFLDCTARTGLDMLAKHYYQSSKAWVVFFVPGSDADIVFYDEFMHYLEEKQRAAVSKLDDTTTLFLVPPSDFSEKVLKVPGKLSISGVILRLECGGSGSGGPVQQQGERKDTDLLTYYGETSYSEASGAFPDVGNPRIPGPTAFLRSAGRDNQSASMDPYVEDKHDQLSHRYSGSDWPPRDTNPRSSPFIDHTVQKHSGFVPGKQQNADLSRYHDTETPVPAGFQPEQLTHLASSLPRQQQQVQNTPNQPERYAPEGRASFSHLQHAQTPSIPQLVTPQNQNVQIQSSNSQQQEETEANPQKRLQATLQLAAALLQQIQQAKPS", "length": 823, "header": "tr|F4JRD9-1|F4JRD9_ARATH Isoform 1 of RNA recognition motif (RRM)-containing protein OS=Arabidopsis thaliana OX=3702 GN=ATSPEN2 PE=1 SV=1 CANONICAL=F4JRD9-1" }, "locus": { "chromosome": "4", "start_pos": 7462532, "end_pos": 7467862, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G12640.1", "url": "https://www.ensemblgenomes.org/id/AT4G12640.1" }, { "database": "Ensembl Peptide", "id": "AT4G12640.1", "url": "https://www.ensemblgenomes.org/id/AT4G12640.1" } ] } }, { "isoform_ac": "Q9SU22-1", "url": "https://www.uniprot.org/uniprotkb/Q9SU22/entry", "sequence": { "sequence": "MRYESPDTYSKSKMNDRNAEPSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQGKLFGNPRVHICFAKSEPSSSGSGRGPSGRSLSPPYRSVDRLGSSEGYLQDRNYGSISRIPSVREPHYIEDRDLEDSEGYIFNRKRDSSSDGGPAYGRSRSTHRFPQDMHEYHGSPGEMGTSFRDNPHRFQTRSSEYEEPWDLPEDDYYYQEIKRLKTRSSQPERQLPGHQLSGIEQERRPFSRASADFSPKDAFERNYEAGQLRYNQTVEQPLNLAIRNGDKSSLREPHEELMGGYPLPSVVPERKRYTPELNRPSLKDWNWEGTIAKGGNPICRAKCFPVGKVMDMMLPEFLDCTARTGLDMLAKHYYQSSKAWVVFFVPGSDADIVFYDEFMHYLEEKQRAAVSKLDDTTTLFLVPPSDFSEKVLKVPGKLSISGVILRLECGGSGSGGPVQQQGERKDTDLLTYYGETSYSEASGAFPDVGNPRIPGPTAFLRSAGRDNQSASMDPYVEDKHDQLSHRYSGSDWPPRDTNPRSSPFIDHTVQKHSGFVPGKQQNADLSRYHDTETPVPAGFQPEQLTHLASSLPRQQQQVQNTPNQPERYAPEGRASFSHLQHAQTPSIPQLVTPQNQNVQIQSSNSQQQEETEANPQKRLQATLQLAAALLQQIQQAKPS", "length": 695, "header": "tr|Q9SU22-1|F4JRD9_ARATH Computationally mapped isoform of RNA recognition motif (RRM)-containing protein OS=Arabidopsis thaliana OX=3702 GN=ATSPEN2 PE=1 SV=1 CANONICAL=F4JRD9-1" }, "locus": { "chromosome": "4", "start_pos": 7463798, "end_pos": 7467862, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G12640.4", "url": "https://www.ensemblgenomes.org/id/AT4G12640.4" }, { "database": "Ensembl Peptide", "id": "AT4G12640.4", "url": "https://www.ensemblgenomes.org/id/AT4G12640.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 685, "start_aa": "Ser", "end_pos": 685, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser685", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JRD9", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4JRD9" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000" 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"Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SU22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SU22" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr417" }, { "start_pos": 458, "end_pos": 458, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SU22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SU22" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr458" }, { "start_pos": 465, "end_pos": 465, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SU22", "url": 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Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "Q9SU22", "url": "https://www.uniprot.org/uniprotkb/Q9SU22" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9SU22", "url": "https://www.uniprot.org/uniprotkb/Q9SU22" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SU22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SU22" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9SU22", "url": "https://www.uniprot.org/uniprotkb/Q9SU22" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9SU22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SU22" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "F4JRD9", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=F4JRD9" }, { "database": "O-GlcNAc Atlas", "id": "F4JRD9", "url": "https://oglcnac.org/atlas/detail/F4JRD9" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "pathway": [ { "id": "ath:AT4G12640", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G12640", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F4JRD9", "url": 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36063:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36063:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001154252", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154252", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G18422", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G18422", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JRI9", "url": "https://www.uniprot.org/uniprotkb/F4JRI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JRI9-1", "url": "https://www.uniprot.org/uniprotkb/F4JRI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRSELGRIRFLLGAEMAPAPVISRRSCSMSPTLETIFEERSDDFCHQDRYHTVVVGQRNRLFLLVPAIISAVSCVLLYRQDRVVRFS", "length": 88, "header": "tr|F4JRI9-1|F4JRI9_ARATH Isoform 1 of Transmembrane 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"MVSREQKRGSLQEKFQLLRSITNSHAENDTSIIMDASKYIQKLKQKVERFNQDPTAEQSSSEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARASCTDSFSLHAMGLENEDGENMDAEAVKQAVTDAIRSWGEINDPQN", "length": 158, "header": "tr|Q8RUZ5-1|Q8RUZ5_ARATH Isoform 1 of Transcription factor SCREAM-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8RUZ5-1" }, "locus": { "chromosome": "2", "start_pos": 16886767, "end_pos": 16888638, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G40435.1", "url": "https://www.ensemblgenomes.org/id/AT2G40435.1" }, { "database": "Ensembl Peptide", "id": "AT2G40435.1", "url": "https://www.ensemblgenomes.org/id/AT2G40435.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, 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"url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G40435", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G40435", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "Q8RUZ5", "url": "https://www.uniprot.org/uniprotkb/Q8RUZ5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "Q8RUZ5", "url": "https://www.uniprot.org/uniprotkb/Q8RUZ5" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "Q8RUZ5", "url": 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CANONICAL=Q8S8R6-1" }, "locus": { "chromosome": "2", "start_pos": 745674, "end_pos": 748166, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G02680.2", "url": "https://www.ensemblgenomes.org/id/AT2G02680.2" }, { "database": "Ensembl Peptide", "id": "AT2G02680.2", "url": "https://www.ensemblgenomes.org/id/AT2G02680.2" } ] } }, { "isoform_ac": "Q8S8R6-1", "url": "https://www.uniprot.org/uniprotkb/Q8S8R6/entry", "sequence": { "sequence": 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"tr|Q8S8M7-1|Q8S8M7_ARATH Isoform 1 of Cystic fibrosis transmembrane conductance regulator OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8S8M7-1" }, "locus": { "chromosome": "2", "start_pos": 14936565, "end_pos": 14938032, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G35585.1", "url": "https://www.ensemblgenomes.org/id/AT2G35585.1" }, { "database": "Ensembl Peptide", "id": "AT2G35585.1", "url": "https://www.ensemblgenomes.org/id/AT2G35585.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 137, "end_pos": 137, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8S8M7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8M7" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser137" }, { "start_pos": 20, "end_pos": 20, "kinase_uniprot_canonical_ac": "", 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"https://www.uniprot.org/uniprotkb/A0A1P8B256" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8S8M7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8M7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", 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"MEAVDRPLRIEETTVSHDVSSCGFISKEEWLNKHPPSGSGWTDEDDDNDDVFSSSFISKEELSDAVHNDPPSGWTDEDDDDQVDPALEKEFYRQIRESDGFDVDIRIPTSSLYVYKCANNDDLRGDIVGICARVGLHWYNFQKGSNLELMHVDKYNSRFCALMTYNITAEAVDPANDSRFTFQTCVTRATCQKDEDLRILTEVCRIKPKIQGTGDEIKRWNDEAIDDIYKGNLPEWISDDTLMSCSEQDHFYRVQESDIREHNWLQLYTEIASYSLWEGDMRLKSCVPLQIKNVLVRTREDFKSKEKLKAGNAIFYISFRGVNTPHGPPQDHRAIVRRTVDGIPGHVCLEFKCLLMDL", "length": 358, "header": "sp|Q8LFV1-1|Y4295_ARATH Isoform 1 of UPF0725 protein At4g29550 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8LFV1-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B3V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3V6/entry", "sequence": { "sequence": "MQGFDVDIRIPTSSLYVYKCANNDDLRGDIVGICARVGLHWYNFQKGSNLELMHVDKYNSRFCALMTYNITAEAVDPANDSRFTFQTCVTRATCQKDEDLRILTEVCRIKPKIQGTGDEIKRWNDEAIDDIYKGNLPEWISDDTLMSCSEQDHFYRVQESDIREHNWLQLYTEIASYSLWEGDMRLKSCVPLQIKNVLVRTREDFKSKEKLKAGNAIFYISFRGVNTPHGPPQDHRAIVRRTVDGIPGHVCLEFKCLLMDL", "length": 261, "header": "tr|A0A1P8B3V6-1|Y4295_ARATH Computationally mapped isoform of UPF0725 protein At4g29550 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8LFV1-1" }, "locus": { "chromosome": "4", "start_pos": 14502381, "end_pos": 14503847, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G29550.3", "url": "https://www.ensemblgenomes.org/id/AT4G29550.3" }, { "database": "Ensembl Peptide", "id": "AT4G29550.3", "url": "https://www.ensemblgenomes.org/id/AT4G29550.3" } ] } }, { "isoform_ac": "Q8LFV1-1", "url": "https://www.uniprot.org/uniprotkb/Q8LFV1/entry#Q8LFV1-1", "sequence": { "sequence": "MEAVDRPLRIEETTVSHDVSSCGFISKEEWLNKHPPSGSGWTDEDDDNDDVFSSSFISKEELSDAVHNDPPSGWTDEDDDDQVDPALEKEFYRQIRESDGFDVDIRIPTSSLYVYKCANNDDLRGDIVGICARVGLHWYNFQKGSNLELMHVDKYNSRFCALMTYNITAEAVDPANDSRFTFQTCVTRATCQKDEDLRILTEVCRIKPKIQGTGDEIKRWNDEAIDDIYKGNLPEWISDDTLMSCSEQDHFYRVQESDIREHNWLQLYTEIASYSLWEGDMRLKSCVPLQIKNVLVRTREDFKSKEKLKAGNAIFYISFRGVNTPHGPPQDHRAIVRRTVDGIPGHVCLEFKCLLMDL", "length": 358, "header": "sp|Q8LFV1-1|Y4295_ARATH Isoform 1 of UPF0725 protein At4g29550 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8LFV1-1" }, "locus": { "chromosome": "4", "start_pos": 14502212, "end_pos": 14503847, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G29550.1", "url": "https://www.ensemblgenomes.org/id/AT4G29550.1" }, { "database": "Ensembl Peptide", "id": "AT4G29550.1", "url": "https://www.ensemblgenomes.org/id/AT4G29550.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, 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Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B3V6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3V6" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.", "journal": "Plant Biotechnol. 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"MFEIADTHSLPFALRFEQSLSRTTINGDRSIWFQEKGGSSYTSMGRSKKGCVCCKKPSDRRTSNPSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDESSKEKPLTKAILDVLEKSRKKTEGDTSVKEKPPKRQVELPRPPSSFVKRTPLSSSASGPRELKEVAKNRGIKGYSKLRKSELLELIRSS", "length": 189, "header": "tr|F4JRN1-1|F4JRN1_ARATH Computationally mapped isoform of Rho termination factor OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JRN0-1" }, "locus": { "chromosome": "4", "start_pos": 10303392, "end_pos": 10304612, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G18740.3", "url": "https://www.ensemblgenomes.org/id/AT4G18740.3" }, { "database": "Ensembl Peptide", "id": "AT4G18740.3", "url": "https://www.ensemblgenomes.org/id/AT4G18740.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, 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Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B4Q9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G18740", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G18740", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription termination", "id": "GO:0006353", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006353", "evidence": [ { "database": "UniProtKB", "id": "F4JRN0", "url": "https://www.uniprot.org/uniprotkb/F4JRN0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JRN0", "url": 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Classification" ] }, { "id": "PF01363", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01363", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08381", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08381", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13713", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13713", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16457", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16457", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25390", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25390", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001154232", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154232", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G14368", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G14368", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B4X4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B4X4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B4X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B4X4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B4Z7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B4Z7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B4Z7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B4Z7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B500", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B500", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B500-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B500-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JVE8", "url": "https://www.uniprot.org/uniprotkb/F4JVE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JVE8-1", "url": "https://www.uniprot.org/uniprotkb/F4JVE8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKTDGMADPSSYVNHDRDIDQALVSLKKGTQLLKYSRKGRPKFRSFRLSPDETTLFWLSHGEEKGLKLATVSRILPGQRTAVFRRYLRPEKDYLSFSLIYHNGDRSLDLICKDKAETEVWFAGLKSLIRQNRNKQAKSEIPEVSIHDSDCFSTGRPSTASIDFAPNNTRRGRTSIDLGIQNSPTKFGSSDVGYERGNMLRPSTDGFRISVSSTPSCSTGTSGPDDIESLGDVYVWGEVWSDGISPDGVVNSTTVKIDVLIPKPLESNVVLDVHQIACGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVCRPKLVEFLALTNIDFVACGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGSDLSHWIPKRVSGPVEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVLGHGDRESVSYPKEVKMLSGLKTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLGHGNKETYLLPTCVSSLIDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLGSSNSDGKLPCLVQDRLVGEFVEEISCGDHHVAVLTSRSEVFTWGKGSNGRLGHGDKDDRKTPTLVEALRERHVKSISCGSNFTSSICIHKWVSGADQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDACYTKLKAGESGYNSNVANRNSTTPTRSLDGTGRPDRDIRSSRILLSPKTEPVKYSEVRSSRSESSIVRASQVPALQQLRDVAFPSSLSAIQNAFKPVASSSTSTLPSGTRSSRISSPPRSSGFSRGMIDTLKKSNGVINKEMTKLQSQIKNLKEKCDNQGTEIQRLKKTAREASDLAVKHSSKHKAATEVMKSVAEHLRELKEKLPPEVSRCEAFESMNSQAEAYLNASEASESCLPTTSLGMGQRDPTPSTNTQDQNIEEKQSSNGGNMRSQEPSGTTEASSSSKGGGKELIEQFEPGVYVTYVLHKNGGKIFRRVRFSFFVANGDLMSIKQKNGGIAKKIGCLRGIVIMLHHRVQRLLIQFQHQLNLNHQLLIQFLHQLNLNHQLLIQFLHQLNLNHQLLLHNRILIKQRIQKKFLMKASHHVYNSSLAK", "length": 1106, "header": "tr|F4JVE8-1|F4JVE8_ARATH Isoform 1 of Regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JVE8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B4X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B4X4/entry", "sequence": { "sequence": "MKTDGMADPSSYVNHDRDIDQALVSLKKGTQLLKYSRKGRPKFRSFRLSPDETTLFWLSHGEEKGLKLATVSRILPGQRTAVFRRYLRPEKDYLSFSLIYHNGDRSLDLICKDKAETEVWFAGLKSLIRQNRNKQAKSEIPEVSIHDSDCFSTGRPSTASIDFAPNNTRRGRTSIDLGIQNSPTKFGSSDVGYERGNMLRPSTDGFRISVSSTPSCSTGTSGPDDIESLGDVYVWGEVWSDGISPDGVVNSTTVKIDVLIPKPLESNVVLDVHQIACGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVCRPKLVEFLALTNIDFVACGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGSDLSHWIPKRVSGPVEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVLGHGDRESVSYPKEVKMLSGLKTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLGHGNKETYLLPTCVSSLIDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLGSSNSDGKLPCLVQDRLVGEFVEEISCGDHHVAVLTSRSEVFTWGKGSNGRLGHGDKDDRKTPTLVEALRERHVKSISCGSNFTSSICIHKWVSGADQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDACYTKLKAGESGYNSNVANRNSTTPTRSLDGTGRPDRDIRSSRILLSPKTEPVKYSEVRSSRSESSIVRASQVPALQQLRDVAFPSSLSAIQNAFKPVASSSTSTLPSGTRSSRISSPPRSSGFSRGMIDTLKKSNGVINKEMTKLQSQIKNLKEKCDNQGTEIQRLKKTAREASDLAVKHSSKHKAATEVMKSVAEHLRELKEKLPPEVSRCEAFESMNSQAEAYLNASEASESCLPTTSLGMGQRDPTPSTNTQDQNIEEKQSSNGGNMRSQEPSGTTEASSSSKGGGKELIEQFEPGVYVTYVLHKNGGKIFRRVRFSKRRFDEHQAEEWWNSKKDRLLKRYSHHASSSSPTASDSVPTPTQPQPPASDSVPTPTQPQPPASDSVPTPTQPQPPASPTQPNSDQAEDSKEVLDES", "length": 1091, "header": "tr|A0A1P8B4X4-1|F4JVE8_ARATH Computationally mapped isoform of Regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JVE8-1" }, "locus": { "chromosome": "4", "start_pos": 8274170, "end_pos": 8278810, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14368.4", "url": "https://www.ensemblgenomes.org/id/AT4G14368.4" }, { "database": "Ensembl Peptide", "id": "AT4G14368.4", "url": "https://www.ensemblgenomes.org/id/AT4G14368.4" } ] } }, { "isoform_ac": "A0A1P8B4Z7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B4Z7/entry", "sequence": { "sequence": "MKTDGMADPSSYVNHDRDIDQALVSLKKGTQLLKYSRKGRPKFRSFRLSPDETTLFWLSHGEEKGLKLATVSRILPGQRTAVFRRYLRPEKDYLSFSLIYHNGDRSLDLICKDKAETEVWFAGLKSLIRQNRNKQAKSEIPEIHDSDCFSTGRPSTASIDFAPNNTRRGRTSIDLGIQNSPTKFGSSDVGYERGNMLRPSTDGFRISVSSTPSCSTGTSGPDDIESLGDVYVWGEVWSDGISPDGVVNSTTVKIDVLIPKPLESNVVLDVHQIACGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVCRPKLVEFLALTNIDFVACGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGSDLSHWIPKRVSGPVEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVLGHGDRESVSYPKEVKMLSGLKTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLGHGNKETYLLPTCVSSLIDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLGSSNSDGKLPCLVQDRLVGEFVEEISCGDHHVAVLTSRSEVFTWGKGSNGRLGHGDKDDRKTPTLVEALRERHVKSISCGSNFTSSICIHKWVSGADQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDACYTKLKAGESGYNSNVANRNSTTPTRSLDGTGRPDRDIRSSRILLSPKTEPVKYSEVRSSRSESSIVRASQVPALQQLRDVAFPSSLSAIQNAFKPVASSSTSTLPSGTRSSRISSPPRSSGFSRGMIDTLKKSNGVINKEMTKLQSQIKNLKEKCDNQGTEIQRLKKTAREASDLAVKHSSKHKAATEVMKSVAEHLRELKEKLPPEVSRCEAFESMNSQAEAYLNASEASESCLPTTSLGMGQRDPTPSTNTQDQNIEEKQSSNGGNMRSQEPSGTTEASSSSKGGGKELIEQFEPGVYVTYVLHKNGGKIFRRVRFSKRRFDEHQAEEWWNSKKDRLLKRYSHHASSSSPTASDSVPTPTQPQPPASDSVPTPTQPQPPASDSVPTPTQPQPPASPTQPNSDQAEDSKEVLDES", "length": 1089, "header": "tr|A0A1P8B4Z7-1|F4JVE8_ARATH Computationally mapped isoform of Regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JVE8-1" }, "locus": { "chromosome": "4", "start_pos": 8274085, "end_pos": 8278810, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14368.2", "url": "https://www.ensemblgenomes.org/id/AT4G14368.2" }, { "database": "Ensembl Peptide", "id": "AT4G14368.2", "url": "https://www.ensemblgenomes.org/id/AT4G14368.2" } ] } }, { "isoform_ac": "A0A1P8B500-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B500/entry", "sequence": { "sequence": "MADPSSYVNHDRDIDQALVSLKKGTQLLKYSRKGRPKFRSFRLSPDETTLFWLSHGEEKGLKLATVSRILPGQRTAVFRRYLRPEKDYLSFSLIYHNGDRSLDLICKDKAETEVWFAGLKSLIRQNRNKQAKSEIPEIHDSDCFSTGRPSTASIDFAPNNTRRGRTSIDLGIQNSPTKFGSSDVGYERGNMLRPSTDGFRISVSSTPSCSTGTSGPDDIESLGDVYVWGEVWSDGISPDGVVNSTTVKIDVLIPKPLESNVVLDVHQIACGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVCRPKLVEFLALTNIDFVACGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGSDLSHWIPKRVSGPVEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVLGHGDRESVSYPKEVKMLSGLKTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLGHGNKETYLLPTCVSSLIDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLGSSNSDGKLPCLVQDRLVGEFVEEISCGDHHVAVLTSRSEVFTWGKGSNGRLGHGDKDDRKTPTLVEALRERHVKSISCGSNFTSSICIHKWVSGADQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDACYTKLKAGESGYNSNVANRNSTTPTRSLDGTGRPDRDIRSSRILLSPKTEPVKYSEVRSSRSESSIVRASQVPALQQLRDVAFPSSLSAIQNAFKPVASSSTSTLPSGTRSSRISSPPRSSGFSRGMIDTLKKSNGVINKEMTKLQSQIKNLKEKCDNQGTEIQRLKKTAREASDLAVKHSSKHKAATEVMKSVAEHLRELKEKLPPEVSRCEAFESMNSQAEAYLNASEASESCLPTTSLGMGQRDPTPSTNTQDQNIEEKQSSNGGNMRSQEPSGTTEASSSSKGGGKELIEQFEPGVYVTYVLHKNGGKIFRRVRFSKRRFDEHQAEEWWNSKKDRLLKRYSHHASSSSPTASDSVPTPTQPQPPASDSVPTPTQPQPPASDSVPTPTQPQPPASPTQPNSDQAEDSKEVLDES", "length": 1084, "header": "tr|A0A1P8B500-1|F4JVE8_ARATH Computationally mapped isoform of Regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JVE8-1" }, "locus": { "chromosome": "4", "start_pos": 8274145, "end_pos": 8278908, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14368.3", "url": "https://www.ensemblgenomes.org/id/AT4G14368.3" }, { "database": "Ensembl Peptide", "id": "AT4G14368.3", "url": "https://www.ensemblgenomes.org/id/AT4G14368.3" } ] } }, { "isoform_ac": "F4JVE8-1", "url": "https://www.uniprot.org/uniprotkb/F4JVE8/entry", "sequence": { "sequence": "MKTDGMADPSSYVNHDRDIDQALVSLKKGTQLLKYSRKGRPKFRSFRLSPDETTLFWLSHGEEKGLKLATVSRILPGQRTAVFRRYLRPEKDYLSFSLIYHNGDRSLDLICKDKAETEVWFAGLKSLIRQNRNKQAKSEIPEVSIHDSDCFSTGRPSTASIDFAPNNTRRGRTSIDLGIQNSPTKFGSSDVGYERGNMLRPSTDGFRISVSSTPSCSTGTSGPDDIESLGDVYVWGEVWSDGISPDGVVNSTTVKIDVLIPKPLESNVVLDVHQIACGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVCRPKLVEFLALTNIDFVACGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGSDLSHWIPKRVSGPVEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVLGHGDRESVSYPKEVKMLSGLKTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLGHGNKETYLLPTCVSSLIDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLGSSNSDGKLPCLVQDRLVGEFVEEISCGDHHVAVLTSRSEVFTWGKGSNGRLGHGDKDDRKTPTLVEALRERHVKSISCGSNFTSSICIHKWVSGADQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDACYTKLKAGESGYNSNVANRNSTTPTRSLDGTGRPDRDIRSSRILLSPKTEPVKYSEVRSSRSESSIVRASQVPALQQLRDVAFPSSLSAIQNAFKPVASSSTSTLPSGTRSSRISSPPRSSGFSRGMIDTLKKSNGVINKEMTKLQSQIKNLKEKCDNQGTEIQRLKKTAREASDLAVKHSSKHKAATEVMKSVAEHLRELKEKLPPEVSRCEAFESMNSQAEAYLNASEASESCLPTTSLGMGQRDPTPSTNTQDQNIEEKQSSNGGNMRSQEPSGTTEASSSSKGGGKELIEQFEPGVYVTYVLHKNGGKIFRRVRFSFFVANGDLMSIKQKNGGIAKKIGCLRGIVIMLHHRVQRLLIQFQHQLNLNHQLLIQFLHQLNLNHQLLIQFLHQLNLNHQLLLHNRILIKQRIQKKFLMKASHHVYNSSLAK", "length": 1106, "header": "tr|F4JVE8-1|F4JVE8_ARATH Isoform 1 of Regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JVE8-1" }, "locus": { "chromosome": "4", "start_pos": 8274168, "end_pos": 8278810, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14368.1", "url": "https://www.ensemblgenomes.org/id/AT4G14368.1" }, { "database": "Ensembl Peptide", "id": "AT4G14368.1", "url": "https://www.ensemblgenomes.org/id/AT4G14368.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 213, "start_aa": "Thr", "end_pos": 213, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr213", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 664, "start_aa": "Thr", "end_pos": 664, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr664", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 923, "start_aa": "Thr", "end_pos": 923, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr923", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B4X4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B4X4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B4X4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B4X4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G14368", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G14368", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F4JVE8", "url": "https://www.uniprot.org/uniprotkb/F4JVE8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JVE8", "url": "https://www.uniprot.org/uniprotkb/F4JVE8" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F4JVE8", "url": "https://www.uniprot.org/uniprotkb/F4JVE8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1101, "end_pos": 1103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 449, "end_pos": 451, "annotation": "n_glycosylation_sequon" }, { "start_pos": 605, "end_pos": 607, "annotation": "n_glycosylation_sequon" }, { "start_pos": 694, "end_pos": 696, "annotation": "n_glycosylation_sequon" }, { "start_pos": 901, "end_pos": 903, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JVE8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1106, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JVE8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JVE8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JVE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JVE8" }, { "id": "PS51514", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51514" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BRX", "eco_id": "ECO_0000259", "start_pos": 964, "end_pos": 1023, "start_aa": "Lys", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "F4JVE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JVE8" }, { "id": "PS50178", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50178" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FYVE-type", "eco_id": "ECO_0000259", "start_pos": 618, "end_pos": 680, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": 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} ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JRR2-1", "uniprot_ac": "F4JRR2", "uniprot_id": "F4JRR2_ARATH", "mass": { "chemical_mass": 124150.0, "monoisotopic_mass": 124150.0 }, "refseq": { "ac": "NP_194217", "name": "P-loop containing nucleoside triphosphate hydrolases superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194217" }, "gene_names": [ { "name": "F6I7.70", "type": "synonym", "evidence": [ { "id": "NP_194217", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194217" }, { "id": "F4JRR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JRR2" } ] }, { "name": "F6I7_70", "type": "synonym", "evidence": [ { "id": "NP_194217", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194217" }, { "id": "F4JRR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JRR2" } ] } ], "protein_names": [ { "name": "P-loop containing nucleoside triphosphate hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_194217", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194217" }, { "id": "F4JRR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JRR2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JRR2", "url": "https://www.uniprot.org/uniprotkb/F4JRR2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JRR2", "locus": {} } ], "crossref": [ { "id": "F4JRR2", "url": "https://alphafold.ebi.ac.uk/entry/F4JRR2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G24860", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G24860", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828589", "url": "https://www.ncbi.nlm.nih.gov/gene/828589", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003959", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003959", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003960", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003960", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G24860", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G24860", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ANFARWI", "url": "https://omabrowser.org/oma/group/ANFARWI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45644", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45644", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45644:SF39", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45644:SF39", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17862", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17862", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24933", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24933", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_194217", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194217", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G24860", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G24860", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B504", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B504", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B504-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B504-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B505", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B505", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B505-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B505-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B512", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B512", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B512-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B512-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JRR2", "url": "https://www.uniprot.org/uniprotkb/F4JRR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JRR2-1", "url": "https://www.uniprot.org/uniprotkb/F4JRR2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSPGRSDSTSGENNNPPDGSSGKRSPSSPADKSPSKRQKLEDGGDTLPPSDSSKCVLGDTTPTSGDSQIDASAAAATTSQPPPVAQAILQEKASFERWTYVHSRFENPWCRLLSQSAQYPSINIFLSVFKFLDGELSSYSFKITRIQRKGNVLAVLETMGNNGHMWINGNYAEGNINHVLNSGDEVVYQQMPIVAAKPGSVQVPAGKFLDLERMTGHSIISSLERLIHASSKSHQAPESMVQVDGMEGIFSVNNQDSKMEILDEKNEVTSNSQQASTSGNGLQSAIFREAIQAGFVRGENMEVSFKNFPYYLSEYTKAALLYASYIHLKKKEYVQFVSDMTPMNPRILLSGPAGSEIYQETLAKALARDLEAKLLIFDSYPILGFTRGKFLHLHLFVYFPDYGYEITALTAKEVESLRDGLASNKSCKLPNQSIELIDQGKSSDLSAGGGVASSLSPAASSDSDSQLQLEPETLPRSVNHTLKKGMPPLHCLQQKILLQSSWISGLRILHLEEKNTCRGPPNGTTGKVILVFDENPSAKVGVRFDKPIPDGVDLGELCESGHGFFCKATDLPFKSSSFKDLVRLLVNTLFEVVHSESRTCPFILFLKDAEKSVAGNFDLYSAFQIRLEYLPENVIVICSQTHSDHLKVKDIGRQKKQGKEVPHATELLAELFENKITIQMPQDEKRLTLWKHQMDRDAETSKVKSNFNHLRMVLRRRGLGCEGLETTWSRMCLKDLTLQRDSVEKIIGWAFGNHISKNPDTDPAKVTLSRESIEFGIGLLQNDLKGSTSSKKDIVVENVFEKRLLSDVILPSDIDVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPGTGKTMLAKAVAKEADANFINISMSSITSKWFGEGEKYVKAVFSLASKMSPSVIFVDEVDSMLGRREHPREHEASRKIKNEFMMHWDGLTTQERERVLVLAATNRPFDLDEAVIRRLPRRLMVGLPDTSNRAFILKVILAKEDLSPDLDIGEIASMTNGYSGSDLKNLCVTAAHRPIKEILEKEKRERDAALAQGKVPPPLSGSSDLRALNVEDFRDAHKWVSASVSSESATMTALQQWNKLHGEGGSGKQQSFSFYT", "length": 1122, "header": "tr|F4JRR2-1|F4JRR2_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JRR2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B504-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B504/entry", "sequence": { "sequence": "MVSPGRSDSTSGENNNPPDGSSGKRSPSSPADKSPSKRQKLEDGGDTLPPSDSSKCVLGDTTPTSGDSQIDASAAAATTSQPPPVAQAILQEKASFERWTYVHSRFENPWCRLLSQSAQYPSINIFLSVFKFLDGELSSYSFKITRIQRKGNVLAVLETMGNNGHMWINGNYAEGNINHVLNSGDEVVIGLSRIAFVYQQMPIVAAKPGSVQVPAGKFLDLERMTGHSIISSLERLIHASSKSHQAPESMVQVDGMEGIFSVNNQDSKMEILDEKNEVTSNSQQASTSGNGLQSAIFREAIQAGFVRGENMEVSFKNFPYYLSEYTKAALLYASYIHLKKKEYVQFVSDMTPMNPRILLSGPAGSEIYQETLAKALARDLEAKLLIFDSYPILGFTRGKFLHLHLFVYFPDYGYEITALTAKEVESLRDGLASNKSCKLPNQSIELIDQGKSSDLSAGGGVASSLSPAASSDSDSQLQLEPETLPRSVNHTLKKGDRVKFFSTGLYSGPSTLGLRGPPNGTTGKVILVFDENPSAKVGVRFDKPIPDGVDLGELCESGHGFFCKATDLPFKSSSFKDLVRLLVNTLFEVVHSESRTCPFILFLKDAEKSVAGNFDLYSAFQIRLEYLPENVIVICSQTHSDHLKVKDIGRQKKQGKEVPHATELLAELFENKITIQMPQDEKRLTLWKHQMDRDAETSKVKSNFNHLRMVLRRRGLGCEGLETTWSRMCLKDLTLQRDSVEKIIGWAFGNHISKNPDTDPAKVTLSRESIEFGIGLLQNDLKGSTSSKKDIVVENVFEKRLLSDVILPSDIDVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPGTGKTMLAKAVAKEADANFINISMSSITSKWFGEGEKYVKAVFSLASKMSPSVIFVDEVDSMLGRREHPREHEASRKIKNEFMMHWDGLTTQERERVLVLAATNRPFDLDEAVIRRLPRRLMVGLPDTSNRAFILKVILAKEDLSPDLDIGEIASMTNGYSGSDLKNLCVTAAHRPIKEILEKEKRERDAALAQGKVPPPLSGSSDLRALNVEDFRDAHKWVSASVSSESATMTALQQWNKLHGEGGSGKQQSFSFYT", "length": 1118, "header": "tr|A0A1P8B504-1|F4JRR2_ARATH Computationally mapped isoform of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JRR2-1" }, "locus": { "chromosome": "4", "start_pos": 12801376, "end_pos": 12808190, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G24860.2", "url": "https://www.ensemblgenomes.org/id/AT4G24860.2" }, { "database": "Ensembl Peptide", "id": "AT4G24860.2", "url": "https://www.ensemblgenomes.org/id/AT4G24860.2" } ] } }, { "isoform_ac": "A0A1P8B505-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B505/entry", "sequence": { "sequence": 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Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, 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Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B504", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B504" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B505", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B505" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": 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CANONICAL=F4JS93-1" }, "locus": { "chromosome": "4", "start_pos": 7650053, "end_pos": 7652289, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G13150.2", "url": "https://www.ensemblgenomes.org/id/AT4G13150.2" }, { "database": "Ensembl Peptide", "id": "AT4G13150.2", "url": "https://www.ensemblgenomes.org/id/AT4G13150.2" } ] } }, { "isoform_ac": "A0A1P8B5B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B5B1/entry", "sequence": { "sequence": "MLSSMVVPVNGFSLNLSKPNLVVFNGSRVFYGSFSLTCYRIKVRSSQIGIVGDNDSEKSRDSKDEDENERVSGKGVPFIVKLGLGLGLAMIITVISVALKGSGGGGSPFEEVKSLAKVSSSSEGFTFNAFGNRFMIPGNAPGWVYFWLLMAAGCGLFISEEALNIWVGITLARMLTLDGTWQSFAESFSRNAPYIVSTVSWVYWGVCLSDMIPFYIGKLFRQSGASDDVCSKLGIGKEKALSITQAVQKYGNLSGFVERFSVGMRNPTAFFAGALSVSLQEFVAVV", "length": 286, "header": "tr|A0A1P8B5B1-1|F4JS93_ARATH Computationally mapped isoform of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JS93-1" }, "locus": { "chromosome": "4", "start_pos": 7650112, "end_pos": 7652289, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G13150.3", "url": "https://www.ensemblgenomes.org/id/AT4G13150.3" }, { "database": "Ensembl Peptide", "id": "AT4G13150.3", "url": "https://www.ensemblgenomes.org/id/AT4G13150.3" } ] } }, { "isoform_ac": "F4JS93-1", "url": "https://www.uniprot.org/uniprotkb/F4JS93/entry", "sequence": { "sequence": "MLSSMVVPVNGFSLNLSKPNLVVFNGSRVFYGSFSLTCYRIKVRSSQIGIVGDNDSEKSRDSKDEDENERVSGKGVPFIVKLGLGLGLAMIITVISVALKGSGGGGSPFEEVKSLAKVSSSSEGFTFNAFGNRFMIPGNAPGWVYFWLLMAAGCGLFISEEALNIWVGITLARMLTLDGTWQSFAESFSRNAPYIVSTVSWVYWGVCLSDMIPFYIGKLFRQSGASDDVCSKLGIGKEKALSITQAVQKYGNLSGFVERFSVGMRNPTAFFAGALGISPECFFAGVCCGGLITLPLQLVIGFLLRERPMFALAAVATAVGIWTIFPYVVAASTALFLYIRSRYSTKD", "length": 347, "header": "tr|F4JS93-1|F4JS93_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JS93-1" }, "locus": { "chromosome": "4", "start_pos": 7650053, "end_pos": 7652289, "strand": "+", "evidence": [ 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"locus": {} } ], "crossref": [ { "id": "F4JT13", "url": "https://alphafold.ebi.ac.uk/entry/F4JT13", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G13400", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G13400", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "826971", "url": "https://www.ncbi.nlm.nih.gov/gene/826971", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G13400", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G13400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LYIHSRT", "url": "https://omabrowser.org/oma/group/LYIHSRT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48420", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48420", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48420:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48420:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_193076", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193076", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G13400", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G13400", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B5A3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B5A3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B5A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B5A3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JT13", "url": "https://www.uniprot.org/uniprotkb/F4JT13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JT13-1", "url": "https://www.uniprot.org/uniprotkb/F4JT13-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLSSDSTVPTVSTVTISYSELKESNIDLSARIEEGFGPNGLGILSVKDVPGYSALRQNLLQLAPRLAGLPEEVKRELEDPHSRYNFGWSHGKEKLESGKLDMLKGSYYANPLQDVPTSNSYEIQRYPSYCGSNIWPRNSLPELEGAFKALGKLMFEVGLMVAYHCDQYVSKGIKQHEKQNLEKILLGSRCHKGRLLYYFPAQESSTHDNDSISSWCGWHTDHGSLTGLTRAIFSRDSVEVPCPDPASGLYIQTRSGQIVKVVYGEDEIAYQIGETTSILSSGYLCATPHCVRAPQGEEARGLERSTFALFMQPDWDQKLTFPKEVTIHEELCLSDEVLTFGEYTEKLLNKYYDTKP", "length": 357, "header": "tr|F4JT13-1|F4JT13_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JT13-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B5A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B5A3/entry", "sequence": { "sequence": "MSLSSDSTVPTVSTVTISYSELKESNIDLSARIEEGFGPNGLGILSVKDVPGYSALRQNLLQLAPRLAGLPEEVKRELEDPHSRYNFGWSHGKEKLESGKLDMLKGSYYANPLQDVPTSNSYEIQRYPSYCGSNIWPRNSLPELEGAFKALGKLMFEVGLMVAYHCDQYVSKGIKQHEKQNLEKILLGSRCHKGRLLYYFPAQESSTHDNDSISSWCGWHTDHGSLTGLTRAIFSRDSVEVPCPDPASGLYIQTRSGQIVKVVYGEDEIAYQIGETTSILSSGYLCATPHCVRAPQGEEARGLERSTFALFMQPDWYYSETKISR", "length": 325, "header": "tr|A0A1P8B5A3-1|F4JT13_ARATH Computationally mapped isoform of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JT13-1" }, "locus": { "chromosome": "4", "start_pos": 7787622, "end_pos": 7791287, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G13400.2", "url": "https://www.ensemblgenomes.org/id/AT4G13400.2" }, { "database": "Ensembl Peptide", "id": "AT4G13400.2", "url": "https://www.ensemblgenomes.org/id/AT4G13400.2" } ] } }, { "isoform_ac": "F4JT13-1", "url": "https://www.uniprot.org/uniprotkb/F4JT13/entry", "sequence": { "sequence": "MSLSSDSTVPTVSTVTISYSELKESNIDLSARIEEGFGPNGLGILSVKDVPGYSALRQNLLQLAPRLAGLPEEVKRELEDPHSRYNFGWSHGKEKLESGKLDMLKGSYYANPLQDVPTSNSYEIQRYPSYCGSNIWPRNSLPELEGAFKALGKLMFEVGLMVAYHCDQYVSKGIKQHEKQNLEKILLGSRCHKGRLLYYFPAQESSTHDNDSISSWCGWHTDHGSLTGLTRAIFSRDSVEVPCPDPASGLYIQTRSGQIVKVVYGEDEIAYQIGETTSILSSGYLCATPHCVRAPQGEEARGLERSTFALFMQPDWDQKLTFPKEVTIHEELCLSDEVLTFGEYTEKLLNKYYDTKP", "length": 357, "header": "tr|F4JT13-1|F4JT13_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JT13-1" }, "locus": { "chromosome": "4", "start_pos": 7787627, "end_pos": 7791292, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G13400.1", "url": "https://www.ensemblgenomes.org/id/AT4G13400.1" }, { "database": "Ensembl Peptide", "id": "AT4G13400.1", "url": "https://www.ensemblgenomes.org/id/AT4G13400.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B5A3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B5A3" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B5A3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B5A3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G13400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G13400", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q7KWR1-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMTTEDVQPIETTKDGVVVLNYSDLIAGKDLSDSIEKAYGYSGHGLLVVKGIPSIVELRERLLNLAPRYSALPDEIKEKSVHKESNFSFGWSHGKEILRPGVFDEYKGSYYNNPQYDQPFEDEKMIKEFPESCHPNIWPVEDFPEMRQAFMELGQTIVNVGQLVARQCDKYTVKQCEDYKADTLETVIKESLTCKARLLYYFPINEDQSERSRDSWCGWHNDHSSLTGLCPAMYFTMSEDGKLVVNSDIPCPDAEAGLYAKSRDEKEVKIAIPKDCIAYQIGECSQIQTGGLLRATPHAVQAIKYPESKNVGRGTFAVFMQPNVDVVLNTPKGKENTFVGQYKPGMNFAEFSKVTIENYYSE", "length": 362 }, "evidence": [ { "id": "F4JT13", "url": "https://omabrowser.org/oma/group/F4JT13/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JT13", "url": "https://www.uniprot.org/uniprotkb/F4JT13" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JT13", "url": "https://www.uniprot.org/uniprotkb/F4JT13" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JT13-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 357, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JT13-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JT13" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 210, "end_pos": 212 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { 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"categories": [ "Protein Classification" ] }, { "id": "828584", "url": "https://www.ncbi.nlm.nih.gov/gene/828584", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004147", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004147", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G24810", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G24810", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ETMFDTK", "url": "https://omabrowser.org/oma/group/ETMFDTK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B669", "url": "https://www.orthodb.org/?gene=A0A1P8B669", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B673", "url": "https://www.orthodb.org/?gene=A0A1P8B673", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4JRQ4", "url": "https://www.orthodb.org/?gene=F4JRQ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4JRQ6", "url": "https://www.orthodb.org/?gene=F4JRQ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43173", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43173", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43173:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43173:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03109", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03109", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G24810", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G24810", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B669", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B669", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B669-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B669-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B673", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B673", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B673-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B673-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JRQ4", "url": "https://www.uniprot.org/uniprotkb/F4JRQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JRQ4-1", "url": "https://www.uniprot.org/uniprotkb/F4JRQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JRQ6", "url": "https://www.uniprot.org/uniprotkb/F4JRQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JRQ6-1", "url": "https://www.uniprot.org/uniprotkb/F4JRQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHAIDFKEIQEKLSDGFRPWQRSFQFWARATDIYTGYKVFQLRMNFVKDVNKHEEMWERQHELAAHKVYSMCSDLGGFFLKIAQILGKPDLAPAAWVRKLVTLCDQAPATPFDAVRVVLEKELGKSIEQVFETFDEKPLGSASIAQVHRARVKGDKRDVVVKVQHPGVEKLMMVDIRNLQIFALYMQKTDIKFDLFSMTKEIEKQIGYEFDFKREANAMEKIRRFLYDNNRKSPVLVPRVFPNLVTRKVLVMEFMNGIPILSLGDEMAKRGINPHGKMAEAAKFNILHSLSQAYGQMILKSGFFHADPHPGNILIGKGSEVALLDYGQVKELPDHLRLGYANLVIAIADNNASLALQSFRELGIATVAKCKNEQQELLQLAKTMFDTEMPPGTTTLQPFSEDSSIKKISVEAFPEELFSVLRTVVLLRGLSVGIGINYSCAQHWRAMAEEALHASGRLSTGRKQKRRCSSLRRLYPGPRES", "length": 481, "header": "tr|F4JRQ4-1|F4JRQ4_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JRQ4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B669-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B669/entry", "sequence": { "sequence": "MNFVKDVNKHEEMWERQHELAAHKVYSMCSDLGGFFLKIAQILGKPDLAPAAWVRKLVTLCDQAPATPFDAVRVVLEKELGKSIEQVFETFDEKPLGSASIAQVHRARVKGDKRDVVVKVQHPGVEKLMMVDIRNLQIFALYMQKTDIKFDLFSMTKEIEKQIGYEFDFKREANAMEKIRRFLYDNNRKSPVLVPRVFPNLVTRKVLVMEFMNGIPILSLGDEMAKRGINPHGKMAEAAKFNILHSLSQAYGQMILKSGFFHADPHPGNILIGKGSEVALLDYGQVKELPDHLRLGYANLVIAIADNNASLALQSFR", "length": 317, "header": "tr|A0A1P8B669-1|F4JRQ4_ARATH Computationally mapped isoform of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JRQ4-1" }, "locus": { "chromosome": "4", "start_pos": 12786488, "end_pos": 12789782, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G24810.4", "url": "https://www.ensemblgenomes.org/id/AT4G24810.4" }, { "database": "Ensembl Peptide", "id": "AT4G24810.4", "url": "https://www.ensemblgenomes.org/id/AT4G24810.4" } ] } }, { "isoform_ac": "A0A1P8B673-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B673/entry", "sequence": { "sequence": "MNFVKDVNKHEEMWERQHELAAHKVYSMCSDLGGFFLKIAQILGKPDLAPAAWVRKLVTLCDQAPATPFDAVRVVLEKELGKSIEQVFETFDEKPLGSASIAQVHRARVKGDKRDVVVKVQHPGVEKLMMVDIRNLQIFALYMQKTDIKFDLFSMTKEIEKQIGYEFDFKREANAMEKIRRFLYDNNRKSPVLVPRVFPNLVTRKVLVMEFMNGIPILSLGDEMAKRGINPHGKMAEAAKFNILHSLSQAYGQMILKSGFFHADPHPGNILIGKGSEVALLDYGQVKELPDHLRLGYANLGTWYSYSSQV", "length": 310, "header": "tr|A0A1P8B673-1|F4JRQ4_ARATH Computationally mapped isoform of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JRQ4-1" }, "locus": { "chromosome": "4", "start_pos": 12786488, "end_pos": 12789782, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G24810.5", "url": "https://www.ensemblgenomes.org/id/AT4G24810.5" }, { "database": "Ensembl Peptide", "id": "AT4G24810.5", "url": "https://www.ensemblgenomes.org/id/AT4G24810.5" } ] } }, { "isoform_ac": "F4JRQ4-1", "url": "https://www.uniprot.org/uniprotkb/F4JRQ4/entry", "sequence": { "sequence": "MHAIDFKEIQEKLSDGFRPWQRSFQFWARATDIYTGYKVFQLRMNFVKDVNKHEEMWERQHELAAHKVYSMCSDLGGFFLKIAQILGKPDLAPAAWVRKLVTLCDQAPATPFDAVRVVLEKELGKSIEQVFETFDEKPLGSASIAQVHRARVKGDKRDVVVKVQHPGVEKLMMVDIRNLQIFALYMQKTDIKFDLFSMTKEIEKQIGYEFDFKREANAMEKIRRFLYDNNRKSPVLVPRVFPNLVTRKVLVMEFMNGIPILSLGDEMAKRGINPHGKMAEAAKFNILHSLSQAYGQMILKSGFFHADPHPGNILIGKGSEVALLDYGQVKELPDHLRLGYANLVIAIADNNASLALQSFRELGIATVAKCKNEQQELLQLAKTMFDTEMPPGTTTLQPFSEDSSIKKISVEAFPEELFSVLRTVVLLRGLSVGIGINYSCAQHWRAMAEEALHASGRLSTGRKQKRRCSSLRRLYPGPRES", "length": 481, "header": "tr|F4JRQ4-1|F4JRQ4_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JRQ4-1" }, "locus": { "chromosome": "4", "start_pos": 12786488, "end_pos": 12789740, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G24810.2", "url": "https://www.ensemblgenomes.org/id/AT4G24810.2" }, { "database": "Ensembl Peptide", "id": "AT4G24810.2", "url": "https://www.ensemblgenomes.org/id/AT4G24810.2" } ] } }, { "isoform_ac": "F4JRQ6-1", "url": "https://www.uniprot.org/uniprotkb/F4JRQ6/entry", "sequence": { "sequence": "MNFVKDVNKHEEMWERQHELAAHKVYSMCSDLGGFFLKIAQILGKPDLAPAAWVRKLVTLCDQAPATPFDAVRVVLEKELGKSIEQVFETFDEKPLGSASIAQVHRARVKGDKRDVVVKVQHPGVEKLMMVDIRNLQIFALYMQKTDIKFDLFSMTKEIEKQIGYEFDFKREANAMEKIRRFLYDNNRKSPVLVPRVFPNLVTRNNHNTHRKVLVMEFMNGIPILSLGDEMAKRGINPHGKMAEAAKFNILHSLSQAYGQMILKSGFFHADPHPGNILIGKGSEVALLDYGQVKELPDHLRLGYANLVIAIADNNASLALQSFRELGIATVAKCKNEQQELLQLAKTMFDTEMPPGTTTLQPFSEDSSIKKISVEAFPEELFSVLRTVVLLRGLSVGIGINYSCAQHWRAMAEEALHASGRLSTGRKQKRRCSSLRRLYPGPRES", "length": 445, "header": "tr|F4JRQ6-1|F4JRQ6_ARATH Computationally mapped isoform of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JRQ4-1" }, "locus": { "chromosome": "4", "start_pos": 12786130, "end_pos": 12789791, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G24810.3", "url": "https://www.ensemblgenomes.org/id/AT4G24810.3" }, { "database": "Ensembl Peptide", "id": "AT4G24810.3", "url": "https://www.ensemblgenomes.org/id/AT4G24810.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B669", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B669" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B669", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B669" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G24810", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G24810", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JTW1-1", "uniprot_ac": "F4JTW1", "uniprot_id": "F4JTW1_ARATH", "mass": { "chemical_mass": 88349.0, "monoisotopic_mass": 88349.0 }, "refseq": { "ac": "NP_193133", "name": "zinc ion binding protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193133" }, "gene_names": [ { "name": "DL3025C", "type": "recommended", "evidence": [ { "id": "F4JTW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTW1" } ] }, { "name": "DL3025C", "type": "synonym", "evidence": [ { "id": "NP_193133", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193133" } ] }, { "name": "FCAALL.54", "type": "synonym", "evidence": [ { "id": "NP_193133", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193133" }, { "id": "F4JTW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTW1" } ] } ], "protein_names": [ { "name": "Zinc ion binding protein", "type": "synonym", "evidence": [ { "id": "F4JTW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTW1/entry#names_and_taxonomy" } ] }, { "name": "zinc ion binding protein", "type": "synonym", "evidence": [ { "id": "NP_193133", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193133" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JTW1", "url": "https://www.uniprot.org/uniprotkb/F4JTW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DL3025C", "url": "https://www.uniprot.org/uniprotkb/F4JTW1", "locus": {} } ], "crossref": [ { "id": "F4JTW1", "url": "https://alphafold.ebi.ac.uk/entry/F4JTW1", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G13970", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G13970", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827032", "url": "https://www.ncbi.nlm.nih.gov/gene/827032", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G13970", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G13970", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DIEKRPM", "url": "https://omabrowser.org/oma/group/DIEKRPM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33977", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33977", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33977:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33977:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_193133", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193133", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G13970", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G13970", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B6U5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B6U5-1", "url": 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"MARWDQIFSLPVQNPTLPEFSSTDLVWSKVEGYRDNIDRLALIPYTRVDDFVRGECSNKDCPTSFHVEARRRKAKGKKYKPKVDGILEYILYWCSFGPDDNRKGGTVRPSRSTYVPKKNNAGRPNSKRGCRCHFIVKRLIAEPTVALVIYNNDKHVDEKGFPCHGPQDKKAAGTRAMFAPYISEDLRLRVSSLLYVGVSVETIMQRHNESVEKQGGPSNRDDLLTHRYVRRLERSIRRSTYELDEDDDVSISMWVESHQSHVFFFEGFSDTDPFSLGIQTEWQLQQMIRFGNCRLLASDSRFGTNTLKYPIHSLVVFDSENKAIPVAWIIAPRFSSGDAYRWMRALCNRVHAKDPSWKVAGFIVDDPFADIIAIRDVFQCPVLFSFWRLRHAWHKNIIKRCRETKTRVEISRHLGQAVDKISRRQGTATLFDSFVEDFVGSPEFVEYFRSVWSPRIGAWTSALQSLPLASQETCAAMELYHYQLKCRLLNERDSEAYQRADWLVDKLGTKVHSYFWLDEYSGKDNFARYWKEEWVSGLTSFRKALSIPDSDVVISGMSAKITDECDGNEIHVVWNPGSQFGVCSCSWAEKGYICKHMIKLTQLCLGNRAARQSASLLQYYQTLIDLLRCPPHDSLFRDYAVSLAVSVEKQINALGYLQKSDANEGNLQKEIAFSEPSSGKSLDESDLLDKHEGHGEVATDLDGGLSKMPMSCLRVCSGNAEDIISGSEMEIGLSPGSTKAAAEDVTSTVQNGTDSANENCERGAKRLKIWAPENGVYE", "length": 778, "header": "tr|F4JTW1-1|F4JTW1_ARATH Isoform 1 of Zinc ion binding protein OS=Arabidopsis thaliana OX=3702 GN=DL3025C PE=1 SV=1 CANONICAL=F4JTW1-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B6U5-1", "url": 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Transcript", "id": "AT4G13970.2", "url": "https://www.ensemblgenomes.org/id/AT4G13970.2" }, { "database": "Ensembl Peptide", "id": "AT4G13970.2", "url": "https://www.ensemblgenomes.org/id/AT4G13970.2" } ] } }, { "isoform_ac": "F4JTW1-1", "url": "https://www.uniprot.org/uniprotkb/F4JTW1/entry", "sequence": { "sequence": "MARWDQIFSLPVQNPTLPEFSSTDLVWSKVEGYRDNIDRLALIPYTRVDDFVRGECSNKDCPTSFHVEARRRKAKGKKYKPKVDGILEYILYWCSFGPDDNRKGGTVRPSRSTYVPKKNNAGRPNSKRGCRCHFIVKRLIAEPTVALVIYNNDKHVDEKGFPCHGPQDKKAAGTRAMFAPYISEDLRLRVSSLLYVGVSVETIMQRHNESVEKQGGPSNRDDLLTHRYVRRLERSIRRSTYELDEDDDVSISMWVESHQSHVFFFEGFSDTDPFSLGIQTEWQLQQMIRFGNCRLLASDSRFGTNTLKYPIHSLVVFDSENKAIPVAWIIAPRFSSGDAYRWMRALCNRVHAKDPSWKVAGFIVDDPFADIIAIRDVFQCPVLFSFWRLRHAWHKNIIKRCRETKTRVEISRHLGQAVDKISRRQGTATLFDSFVEDFVGSPEFVEYFRSVWSPRIGAWTSALQSLPLASQETCAAMELYHYQLKCRLLNERDSEAYQRADWLVDKLGTKVHSYFWLDEYSGKDNFARYWKEEWVSGLTSFRKALSIPDSDVVISGMSAKITDECDGNEIHVVWNPGSQFGVCSCSWAEKGYICKHMIKLTQLCLGNRAARQSASLLQYYQTLIDLLRCPPHDSLFRDYAVSLAVSVEKQINALGYLQKSDANEGNLQKEIAFSEPSSGKSLDESDLLDKHEGHGEVATDLDGGLSKMPMSCLRVCSGNAEDIISGSEMEIGLSPGSTKAAAEDVTSTVQNGTDSANENCERGAKRLKIWAPENGVYE", "length": 778, "header": "tr|F4JTW1-1|F4JTW1_ARATH Isoform 1 of Zinc ion binding protein OS=Arabidopsis thaliana OX=3702 GN=DL3025C PE=1 SV=1 CANONICAL=F4JTW1-1" }, "locus": { "chromosome": "4", "start_pos": 8070157, "end_pos": 8075655, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G13970.1", "url": "https://www.ensemblgenomes.org/id/AT4G13970.1" }, { "database": "Ensembl Peptide", "id": "AT4G13970.1", "url": "https://www.ensemblgenomes.org/id/AT4G13970.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 681, "end_pos": 681, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JTW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JTW1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser681" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6U5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6U5" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4JTW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JTW1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6U5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6U5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G13970", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G13970", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F4JTW1", "url": "https://www.uniprot.org/uniprotkb/F4JTW1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JTW1", "url": "https://www.uniprot.org/uniprotkb/F4JTW1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" }, { "start_pos": 751, "end_pos": 753, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JTW1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 778, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JTW1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JTW1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JTW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTW1" }, { "id": "PS50966", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50966" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SWIM-type", "eco_id": "ECO_0000259", "start_pos": 568, "end_pos": 605, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], 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] } ], "protein_names": [ { "name": "Dentin sialophosphoprotein-like protein", "type": "synonym", "evidence": [ { "id": "F4JVM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JVM4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JVM4", "url": "https://www.uniprot.org/uniprotkb/F4JVM4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JVM4", "locus": {} } ], "crossref": [ { "id": "F4JVM4", "url": "https://alphafold.ebi.ac.uk/entry/F4JVM4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G20720", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G20720", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827820", "url": "https://www.ncbi.nlm.nih.gov/gene/827820", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR056717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G20720", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G20720", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NNDLSAW", "url": "https://omabrowser.org/oma/group/NNDLSAW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR36308", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36308", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36308:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36308:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25122", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25122", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G20720", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G20720", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B721", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B721", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B721-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B721-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JVM4", "url": "https://www.uniprot.org/uniprotkb/F4JVM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JVM4-1", "url": "https://www.uniprot.org/uniprotkb/F4JVM4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAMEISVDLINQLKVSLRKEAKLTSVDDCSDSSFPSLPTSEEAIAELDASAPYLRCRNCKGKLLRGIESLICVFCGNQQRTSDNPPDPIKFTSTSAYKWFLTSLNLDGSEMVEPLKETDGSSRGATKAPPSKGIALSKFLDLEIQWSALEEKSDDGQSVQKKNPLNLGGINLDDYFVERRGDLSKVEQAESKPVEDDDFKDPRSLSLFDSVKSQGVVGSQQHDNVGLFDKKDAPKSVVSSGEHENLSLFAGRDAQESVSFAAQGNFGFFEEKDARNSFKEDENLSLFEGKEDAQRTSSSKVDESFGFFEGKDAQRTSSSKDDESFGMFEGKKDAQRNSSSKEDESFGMFEGKEDAQRNSSSKENENFGFFEGAPLSNADLKSFDDKIVAASSDWDSDFQSADQNLSQKKIDGDPFVSSPVDLAAHMDSVFGSGKDLLYAQPADSSTAYVSKAGDWLQDDLFGNVTGEAQTNDSAVHDKNEGQIVGGNGNSSMDIDWIGDDLWQTNEKKSIEKTPTDVNDDDDDDWNDFASSANSKTPNNPLSQTMESSQFEIFYGHAQDKNGVKEQSVDEKQNTDTSVMSDIGKCQEDDLFGTWDSFTSSTILQTSLQPPTIHANPSGEKNPEMNLFGENNNNRDLDFDSISRSDFFSESSGGKTNSEEVKVIPSGTSTLDRPSDPDGSKDQTVDLVVGTTTTVPKSKSDVAEELMSQMHDLSFMLETKLSVPPISKTE", "length": 729, "header": "tr|F4JVM4-1|F4JVM4_ARATH Isoform 1 of Dentin sialophosphoprotein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JVM4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B721-1", "url": 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"MAMEISVDLINQLKVSLRKEAKLTSVDDCSDSSFPSLPTSEEAIAELDASAPYLRCRNCKGKLLRGIESLICVFCGNQQRTSDNPPDPIKFTSTSAYKWFLTSLNLDGSEMVEPLKETDGSSRGATKAPPSKGIALSKFLDLEIQWSALEEKSDDGQSVQKKNPLNLGGINLDDYFVERRGDLSKVEQAESKPVEDDDFKDPRSLSLFDSVKSQGVVGSQQHDNVGLFDKKDAPKSVVSSGEHENLSLFAGRDAQESVSFAAQGNFGFFEEKDARNSFKEDENLSLFEGKEDAQRTSSSKVDESFGFFEGKDAQRTSSSKDDESFGMFEGKKDAQRNSSSKEDESFGMFEGKEDAQRNSSSKENENFGFFEGAPLSNADLKSFDDKIVAASSDWDSDFQSADQNLSQKKIDGDPFVSSPVDLAAHMDSVFGSGKDLLYAQPADSSTAYVSKAGDWLQDDLFGNVTGEAQTNDSAVHDKNEGQIVGGNGNSSMDIDWIGDDLWQTNEKKSIEKTPTDVNDDDDDDWNDFASSANSKTPNNPLSQTMESSQFEIFYGHAQDKNGVKEQSVDEKQNTDTSVMSDIGKCQEDDLFGTWDSFTSSTILQTSLQPPTIHANPSGEKNPEMNLFGENNNNRDLDFDSISRSDFFSESSGGKTNSEEVKVIPSGTSTLDRPSDPDGSKDQTVDLVVGTTTTVPKSKSDVAEELMSQMHDLSFMLETKLSVPPISKTE", "length": 729, "header": "tr|F4JVM4-1|F4JVM4_ARATH Isoform 1 of Dentin sialophosphoprotein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JVM4-1" }, "locus": { "chromosome": "4", "start_pos": 11105193, "end_pos": 11108253, "strand": "+", 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"https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser121" }, { "start_pos": 277, "end_pos": 277, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JVM4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVM4" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser277" }, { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JVM4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVM4" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser338" }, { "start_pos": 339, "end_pos": 339, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JVM4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVM4" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser339" }, { "start_pos": 340, "end_pos": 340, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JVM4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVM4" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser340" }, { "start_pos": 432, "end_pos": 432, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JVM4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVM4" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser432" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B721", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B721" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "F4JVM4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVM4" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4JVM4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVM4" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4JVM4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVM4" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "F4JVM4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVM4" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "F4JVM4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVM4" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "F4JVM4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVM4" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B721", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B721" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "F4JVM4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVM4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT4G20720", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G20720", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JVM4", "url": "https://www.uniprot.org/uniprotkb/F4JVM4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 245, "end_pos": 247, "annotation": "n_glycosylation_sequon" }, { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 358, "end_pos": 360, "annotation": "n_glycosylation_sequon" }, { "start_pos": 404, "end_pos": 406, "annotation": "n_glycosylation_sequon" }, { "start_pos": 463, "end_pos": 465, "annotation": "n_glycosylation_sequon" }, { "start_pos": 471, "end_pos": 473, "annotation": "n_glycosylation_sequon" }, { "start_pos": 489, "end_pos": 491, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JVM4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 729, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JVM4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JVM4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JVM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JVM4" }, { "id": "PF25122", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25122" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF7815", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 78, "start_aa": "Pro", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 109, 121, 277, 338, 339, 340, 432 ], "sequon_annotation_sites": [ { "start_pos": 245, "end_pos": 247 }, { "start_pos": 283, "end_pos": 285 }, { "start_pos": 337, "end_pos": 339 }, { "start_pos": 358, "end_pos": 360 }, { "start_pos": 404, "end_pos": 406 }, { "start_pos": 463, "end_pos": 465 }, { "start_pos": 471, "end_pos": 473 }, { "start_pos": 489, "end_pos": 491 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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[ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 7 }, { "field": "total_sites", "count": 7 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JUP6-1", "uniprot_ac": "F4JUP6", "uniprot_id": "F4JUP6_ARATH", "mass": { "chemical_mass": 61916.0, "monoisotopic_mass": 61916.0 }, "refseq": { "ac": "NP_193165", "name": "alpha/beta-Hydrolases superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193165" }, "gene_names": [ { "name": "DL3185C", "type": "recommended", "evidence": [ { "id": "F4JUP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JUP6" } ] }, { "name": "DL3185C", "type": "synonym", "evidence": [ { "id": "NP_193165", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193165" } ] }, { "name": "FCAALL.155", "type": "synonym", "evidence": [ { "id": "NP_193165", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193165" }, { "id": "F4JUP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JUP6" } ] } ], "protein_names": [ { "name": "Alpha/beta-Hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "F4JUP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JUP6/entry#names_and_taxonomy" } ] }, { "name": "alpha/beta-Hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_193165", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193165" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JUP6", "url": "https://www.uniprot.org/uniprotkb/F4JUP6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DL3185C", "url": "https://www.uniprot.org/uniprotkb/F4JUP6", "locus": {} } ], "crossref": [ { "id": "F4JUP6", "url": "https://alphafold.ebi.ac.uk/entry/F4JUP6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G14290", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G14290", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827070", "url": "https://www.ncbi.nlm.nih.gov/gene/827070", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G14290", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G14290", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EISKPME", "url": "https://omabrowser.org/oma/group/EISKPME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR43358", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43358", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43358:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43358:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_193165", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193165", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G14290", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G14290", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B7H6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7H6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7H6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7H6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7I5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7I5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7I5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7J8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7J8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7J8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7K2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7K2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7K2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7K2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JUP6", "url": "https://www.uniprot.org/uniprotkb/F4JUP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JUP6-1", "url": "https://www.uniprot.org/uniprotkb/F4JUP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQLVNFVIRPPRAEYNPEHDLLEQEFLLKGRWYQRKDLEVKNIRGDILQCSHYMPVERPEDRPLPCVIYCHGNSGCRADASEAAIVLLPSNITIFTLDFSGSGLSGGEHVTLGWNEKDDLKAVVEYLRTDGNVSLIGLWGRSMGAVTSLMYGAEDPSIAAMVLDSPFSDLVDLMMELVDTYKFRLPKFTIKFAIQYMRRAVQKKANFNITDLNTIKVAKSCFVPVLFGHAVDDDFIQPHHSERIYEAYIGDKNIIKFDGDHNSPRPQFYFDSINIFFHNVLQPPEVVGPTFFDPVDDYFAKGSWSTMQQLSSPPSSAQKSLAPGSTSDAINEVRLKRPMSRTEVPSNDPSNQSSSETKEKESLEVSSSSSSDMISFDLSNGDPYPPHLAVALDDDQYVEFHVDELADFPSNAEEEERMLMEAVMKSLKDMEVEQTHQKKEPSRTNTETSEGNAAASTTEPELALSDTDSASGPTPCNHDARLSSVASVPSKTSDSLPGPVNGFVPGASPKTSQNKNDVIDLSARTKATVTVVGRSSTSGNVLEGLLRRWDLNFFKSR", "length": 558, "header": "tr|F4JUP6-1|F4JUP6_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DL3185C PE=1 SV=1 CANONICAL=F4JUP6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B7H6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7H6/entry", "sequence": { "sequence": "MANVNHCNLKFDCYNHSLFLLNYEIISLLHFFSSLMYGAEDPSIAAMVLDSPFSDLVDLMMELVDTYKFRLPKFTIKFAIQYMRRAVQKKANFNITDLNTIKVAKSCFVPVLFGHAVDDDFIQPHHSERIYEAYIGDKNIIKFDGDHNSPRPQFYFDSINIFFHNVLQPPEVVGPTFFDPVDDYFAKGSWSTMQQLSSPPSSAQKSLAPGSTSDAINEVRLKRPMSRTEVPSNDPSNQSSSETKEKESLEVSSSSSSDMISFDLSNGDPYPPHLAVALDDDQYVEFHVDELADFPSNAEEEERMLMEAVMKSLKDMEVEQTHQKKEPSRTNTETSEGNAAASTTEPELALSDTDSASGPTPCNHDARLSSVASVPSKTSDSLPGPVNGFVPGASPKTSQNKNDVIDLSARTKATVTVVGRSSTSGNVLEGLLRRWDLNFFKSR", "length": 443, "header": "tr|A0A1P8B7H6-1|F4JUP6_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DL3185C PE=1 SV=1 CANONICAL=F4JUP6-1" }, "locus": { "chromosome": "4", "start_pos": 8225304, "end_pos": 8228195, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14290.3", "url": "https://www.ensemblgenomes.org/id/AT4G14290.3" }, { "database": "Ensembl Peptide", "id": "AT4G14290.3", "url": "https://www.ensemblgenomes.org/id/AT4G14290.3" } ] } }, { "isoform_ac": "A0A1P8B7I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7I5/entry", "sequence": { "sequence": "MEQLVNFVIRPPRAEYNPEHDLLEQEFLLKGRWYQRKDLEVKNIRGDILQCSHYMPVERPEDRPLPCVIYCHGNSGCRADASEAAIVLLPSNITIFTLDFSGSGLSGGEHVTLGWNEKDDLKAVVEYLRTDGNVSLIGLWGRSMGAVTSLMYGAEDPSIAAMVLDSPFSDLVDLMMELVDTYKFRLPKFTIKFAIQYMRRAVQKKANFNITDLNTIKVAKSCFVPVLFGHAVDDDFIQPHHSERIYEAYIGDKNIIKFDGDHNSPRPQFYFDSINIFFHNVLQPPEVVGPTFFDPVDDYFAKGSWSTMQQLSSPPSSAQKSLAPGSTSDAINEVRLKRPMSRTEVPSNDPSNQSSSETKEKESLEVSSSSSSDMISFDLSNGDPYPPHLAVALDDDQYVEFHVDELADFPSNAEEEERMLMEAVMKSLKDMEVEQTHQKKEPSRTNTETSEASVPSKTSDSLPGPVNGFVPGASPKTSQNKNDVIDLSARTKATVTVVGRSSTSGNVLEGLLRRWDLNFFKSR", "length": 523, "header": "tr|A0A1P8B7I5-1|F4JUP6_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DL3185C PE=1 SV=1 CANONICAL=F4JUP6-1" }, "locus": { "chromosome": "4", "start_pos": 8225294, "end_pos": 8230298, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14290.2", "url": "https://www.ensemblgenomes.org/id/AT4G14290.2" }, { "database": "Ensembl Peptide", "id": "AT4G14290.2", "url": "https://www.ensemblgenomes.org/id/AT4G14290.2" } ] } }, { "isoform_ac": "A0A1P8B7J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7J8/entry", "sequence": { "sequence": "MYGAEDPSIAAMVLDSPFSDLVDLMMELVDTYKFRLPKFTIKFAIQYMRRAVQKKANFNITDLNTIKVAKSCFVPVLFGHAVDDDFIQPHHSERIYEAYIGDKNIIKFDGDHNSPRPQFYFDSINIFFHNVLQPPEVVGPTFFDPVDDYFAKGSWSTMQQLSSPPSSAQKSLAPGSTSDAINEVRLKRPMSRTEVPSNDPSNQSSSETKEKESLEVSSSSSSDMISFDLSNGDPYPPHLAVALDDDQYVEFHVDELADFPSNAEEEERMLMEAVMKSLKDMEVEQTHQKKEPSRTNTETSEGNAAASTTEPELALSDTDSASGPTPCNHDARLSSVASVPSKTSDSLPGPVNGFVPGASPKTSQNKNDVIDLSARTKATVTVVGRSSTSGNVLEGLLRRWDLNFFKSR", "length": 408, "header": "tr|A0A1P8B7J8-1|F4JUP6_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DL3185C PE=1 SV=1 CANONICAL=F4JUP6-1" }, "locus": { "chromosome": "4", "start_pos": 8225320, "end_pos": 8228152, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14290.4", "url": "https://www.ensemblgenomes.org/id/AT4G14290.4" }, { "database": "Ensembl Peptide", "id": "AT4G14290.4", "url": "https://www.ensemblgenomes.org/id/AT4G14290.4" } ] } }, { "isoform_ac": "A0A1P8B7K2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7K2/entry", "sequence": { "sequence": "MPVERPEDRPLPCVIYCHGNSGCRADASEAAIVLLPSNITIFTLDFSGSGLSGGEHVTLGWNEKDDLKAVVEYLRTDGNVSLIGLWGRSMGAVTSLMYGAEDPSIAAMVLDSPFSDLVDLMMELVDTYKFRLPKFTIKFAIQYMRRAVQKKANFNITDLNTIKVAKSCFVPVLFGHAVDDDFIQPHHSERIYEAYIGDKNIIKFDGDHNSPRPQFYFDSINIFFHNVLQPPEVVGPTFFDPVDDYFAKGSWSTMQQLSSPPSSAQKSLAPGSTSDAINEVRLKRPMSRTEVPSNDPSNQSSSETKEKESLEVSSSSSSDMISFDLSNGDPYPPHLAVALDDDQYVEFHVDELADFPSNAEEEERMLMEAVMKSLKDMEVEQTHQKKEPSRTNTETSEGNAAASTTEPELALSDTDSASGPTPCNHDARLSSVASVPSKTSDSLPGPVNGFVPGASPKTSQNKNDVIDLSARTKATVTVVGRSSTSGNVLEGLLRRWDLNFFKSR", "length": 504, "header": "tr|A0A1P8B7K2-1|F4JUP6_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DL3185C PE=1 SV=1 CANONICAL=F4JUP6-1" }, "locus": { "chromosome": "4", "start_pos": 8225467, "end_pos": 8230299, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14290.5", "url": "https://www.ensemblgenomes.org/id/AT4G14290.5" }, { "database": "Ensembl Peptide", "id": "AT4G14290.5", "url": "https://www.ensemblgenomes.org/id/AT4G14290.5" } ] } }, { "isoform_ac": "F4JUP6-1", "url": "https://www.uniprot.org/uniprotkb/F4JUP6/entry", "sequence": { "sequence": "MEQLVNFVIRPPRAEYNPEHDLLEQEFLLKGRWYQRKDLEVKNIRGDILQCSHYMPVERPEDRPLPCVIYCHGNSGCRADASEAAIVLLPSNITIFTLDFSGSGLSGGEHVTLGWNEKDDLKAVVEYLRTDGNVSLIGLWGRSMGAVTSLMYGAEDPSIAAMVLDSPFSDLVDLMMELVDTYKFRLPKFTIKFAIQYMRRAVQKKANFNITDLNTIKVAKSCFVPVLFGHAVDDDFIQPHHSERIYEAYIGDKNIIKFDGDHNSPRPQFYFDSINIFFHNVLQPPEVVGPTFFDPVDDYFAKGSWSTMQQLSSPPSSAQKSLAPGSTSDAINEVRLKRPMSRTEVPSNDPSNQSSSETKEKESLEVSSSSSSDMISFDLSNGDPYPPHLAVALDDDQYVEFHVDELADFPSNAEEEERMLMEAVMKSLKDMEVEQTHQKKEPSRTNTETSEGNAAASTTEPELALSDTDSASGPTPCNHDARLSSVASVPSKTSDSLPGPVNGFVPGASPKTSQNKNDVIDLSARTKATVTVVGRSSTSGNVLEGLLRRWDLNFFKSR", "length": 558, "header": "tr|F4JUP6-1|F4JUP6_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DL3185C PE=1 SV=1 CANONICAL=F4JUP6-1" }, "locus": { "chromosome": "4", "start_pos": 8225294, "end_pos": 8230298, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14290.1", "url": "https://www.ensemblgenomes.org/id/AT4G14290.1" }, { "database": "Ensembl Peptide", "id": "AT4G14290.1", "url": "https://www.ensemblgenomes.org/id/AT4G14290.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 475, "start_aa": "Thr", "end_pos": 475, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr475", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [ { "start_pos": 313, "end_pos": 313, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JUP6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JUP6" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ], "site_lbl": "Ser313" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B7H6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7H6" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4JUP6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JUP6" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B7H6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7H6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G14290", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G14290", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4JUP6", "url": "https://www.uniprot.org/uniprotkb/F4JUP6" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JUP6", "url": "https://www.uniprot.org/uniprotkb/F4JUP6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JUP6", "url": "https://www.uniprot.org/uniprotkb/F4JUP6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 352, "end_pos": 354, "annotation": "n_glycosylation_sequon" }, { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JUP6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 558, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JUP6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JUP6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JUP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JUP6" }, { "id": "PF00561", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AB hydrolase-1", "eco_id": "ECO_0000259", "start_pos": 66, "end_pos": 189, "start_aa": "Pro", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 475 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 313 ], "sequon_annotation_sites": [ { "start_pos": 133, "end_pos": 135 }, { "start_pos": 209, "end_pos": 211 }, { "start_pos": 352, "end_pos": 354 }, { "start_pos": 92, "end_pos": 94 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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{ "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JVF4-1", "uniprot_ac": "F4JVF4", "uniprot_id": "F4JVF4_ARATH", "mass": { "chemical_mass": 76710.0, "monoisotopic_mass": 76710.0 }, "refseq": { "ac": "NP_193175", "name": "Ankyrin repeat family protein", "summary": "", "url": 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[], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JVF4", "url": "https://www.uniprot.org/uniprotkb/F4JVF4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DL3235W", "url": "https://www.uniprot.org/uniprotkb/F4JVF4", "locus": {} } ], "crossref": [ { "id": "F4JVF4", "url": "https://alphafold.ebi.ac.uk/entry/F4JVF4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G14390", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G14390", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827084", "url": "https://www.ncbi.nlm.nih.gov/gene/827084", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G14390", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G14390", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IHIACIM", "url": "https://omabrowser.org/oma/group/IHIACIM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24186:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24186:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13962", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13962", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_193175", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193175", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G14390", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G14390", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B807", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B807", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B807-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B807-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B809", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B809", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B809-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B809-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B825", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B825", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B825-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B825-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JVF4", "url": "https://www.uniprot.org/uniprotkb/F4JVF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JVF4-1", "url": "https://www.uniprot.org/uniprotkb/F4JVF4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDELFVSISSTFSKTSCITDLLLPLELDRIEAQRSTDASHDQQNRTYLPMNIHGSQDFSQSGGDGVTPLTGDTESVPEFLTNLRLSDLYAIRGEDVRMIPEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLELVKEIVCECPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYVLKDKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSLVKAILKIIGNKDLKGKKSNLESKLQGQKSLAHVALVTQSIAGVLDVILDEYPSLMDERDINGWTCLSLAAHIGYYEGVCNLLERSTKGVYVCDQDGSFPIHTAAEKGHENIVEEFIKRCPGSKHLLNKLGQNVLHIAAKNGKFWISNMLIINKDTEHLGVGQDVDGNTPLHLAVMNWHFKSITWLARSSKILKVRNKNGLRARDIAEREVKPHYIFQERWTLALLLYAIHSRGFESVHSLTKPSVPLDPKNNRDYVNTLLLVAALVATMTFAAGFTIPGGFNSSAPHLGRATLATNPTLFIFLVLDILAMQSSVATIGILIWAQLGDPVLIRSSLHVALPLLLFALLCMPLAFLFGVVTAVGHVKWLVVIICIISVLFFSWAIFVLGPHVMLQRSYVSPKYAGDFLVTFMQYKDIIGLFVSLIKFLFCGCY", "length": 694, "header": "tr|F4JVF4-1|F4JVF4_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN=DL3235W PE=4 SV=1 CANONICAL=F4JVF4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B807-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B807/entry", "sequence": { "sequence": "MDELFVSISSTFSKTSCITDLLLPLELDRIEAQRSTDASHDQQNRTYLPMNIHGSQDFSQSGGDGVTPLTGDTESVPEFLTNLRLSDLYAIRGEDVRMIPEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLELVKEIVCECPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYVLKDKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSLVKAILKIIGNKDLKGKKSNLESKLQGQKSLAHVALVTQSIGVLDVILDEYPSLMDERDINGWTCLSLAAHIGYYEGVCNLLERSTKGVYVCDQDGSFPIHTAAEKGHENIVEEFIKRCPGSKHLLNKLGQNVLHIAAKNGKFWISNMLIINKDTEHLGVGQDVDGNTPLHLAVMNWHFKSITWLARSSKILKVRNKNGLRARDIAEREVKPHYIFQERWTLALLLYAIHSRGFESVHSLTKPSVPLDPKNNRDYVNTLLLVAALVATMTFAAGFTIPGGFNSSAPHLGRATLATNPTLFIFLVLDILAMQSSVATIGILIWAQLGDPVLIRSSLHVALPLLLFALLCMPLAFLFGVVTAVGHVKWLVVIICIISVLFFSWAIFVLGPHVMLQRSYVSPKYAGDFLVTFMQYKDIIGLFVSLIKFLFCGCY", "length": 693, "header": "tr|A0A1P8B807-1|F4JVF4_ARATH Computationally mapped isoform of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN=DL3235W PE=4 SV=1 CANONICAL=F4JVF4-1" }, "locus": { "chromosome": "4", "start_pos": 8289644, "end_pos": 8292114, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14390.4", "url": "https://www.ensemblgenomes.org/id/AT4G14390.4" }, { "database": "Ensembl Peptide", "id": "AT4G14390.4", "url": "https://www.ensemblgenomes.org/id/AT4G14390.4" } ] } }, { "isoform_ac": "A0A1P8B809-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B809/entry", "sequence": { "sequence": "MDSSEAELDRIEAQRSTDASHDQQNRTYLPMNIHGSQDFSQSGGDGVTPLTGDTESVPEFLTNLRLSDLYAIRGEDVRMIPEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLELVKEIVCECPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYVLKDKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSLVKAILKIIGNKDLKGKKSNLESKLQGQKSLAHVALVTQSIGVLDVILDEYPSLMDERDINGWTCLSLAAHIGYYEGVCNLLERSTKGVYVCDQDGSFPIHTAAEKGHENIVEEFIKRCPGSKHLLNKLGQNVLHIAAKNGKFWISNMLIINKDTEHLGVGQDVDGNTPLHLAVMNWHFKSITWLARSSKILKVRNKNGLRARDIAEREVKPHYIFQERWTLALLLYAIHSRGFESVHSLTKPSVPLDPKNNRDYVNTLLLVAALVATMTFAAGFTIPVPLQQ", "length": 526, "header": "tr|A0A1P8B809-1|F4JVF4_ARATH Computationally mapped isoform of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN=DL3235W PE=4 SV=1 CANONICAL=F4JVF4-1" }, "locus": { "chromosome": "4", "start_pos": 8289623, "end_pos": 8292145, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14390.3", "url": "https://www.ensemblgenomes.org/id/AT4G14390.3" }, { "database": "Ensembl Peptide", "id": "AT4G14390.3", "url": "https://www.ensemblgenomes.org/id/AT4G14390.3" } ] } }, { "isoform_ac": "A0A1P8B825-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B825/entry", "sequence": { "sequence": "MDSSEAELDRIEAQRSTDASHDQQNRTYLPMNIHGSQDFSQSGGDGVTPLTGDTESVPEFLTNLRLSDLYAIRGEDVRMIPEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLELVKEIVCECPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYVLKDKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSLVKAILKIIGNKDLKGKKSNLESKLQGQKSLAHVALVTQSIGVLDVILDEYPSLMDERDINGWTCLSLAAHIGYYEGVCNLLERSTKGVYVCDQDGSFPIHTAAEKGHENIVEEFIKRCPGSKHLLNKLGQNVLHIAAKNGKFWISNMLIINKDTEHLGVGQDVDGNTPLHLAVMNWHFKSITWLARSSKILKVRNKNGLRARDIAEREVKPHYIFQERWTLALLLYAIHSRGFESVHSLTKPSVPLDPKNNRDYVNTLLLVAALVATMTFAAGFTIPGGFNSSAPHLGRATLATNPTLFIFLVLDILAMQSSVATIGILIWAQLGDPVLIRSSLHVALPLLLFALLCMPLAFLFGVVTAVGHVKWLVVIICIISVLFFSWAIFVLGPHVMLQRSYVSPKYAGDFLVTFMQYKDIIGLFVSLIKFLFCGCY", "length": 674, "header": "tr|A0A1P8B825-1|F4JVF4_ARATH Computationally mapped isoform of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN=DL3235W PE=4 SV=1 CANONICAL=F4JVF4-1" }, "locus": { "chromosome": "4", "start_pos": 8289610, "end_pos": 8292203, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14390.2", "url": "https://www.ensemblgenomes.org/id/AT4G14390.2" }, { "database": "Ensembl Peptide", "id": "AT4G14390.2", "url": "https://www.ensemblgenomes.org/id/AT4G14390.2" } ] } }, { "isoform_ac": "F4JVF4-1", "url": "https://www.uniprot.org/uniprotkb/F4JVF4/entry", "sequence": { "sequence": "MDELFVSISSTFSKTSCITDLLLPLELDRIEAQRSTDASHDQQNRTYLPMNIHGSQDFSQSGGDGVTPLTGDTESVPEFLTNLRLSDLYAIRGEDVRMIPEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLELVKEIVCECPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYVLKDKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSLVKAILKIIGNKDLKGKKSNLESKLQGQKSLAHVALVTQSIAGVLDVILDEYPSLMDERDINGWTCLSLAAHIGYYEGVCNLLERSTKGVYVCDQDGSFPIHTAAEKGHENIVEEFIKRCPGSKHLLNKLGQNVLHIAAKNGKFWISNMLIINKDTEHLGVGQDVDGNTPLHLAVMNWHFKSITWLARSSKILKVRNKNGLRARDIAEREVKPHYIFQERWTLALLLYAIHSRGFESVHSLTKPSVPLDPKNNRDYVNTLLLVAALVATMTFAAGFTIPGGFNSSAPHLGRATLATNPTLFIFLVLDILAMQSSVATIGILIWAQLGDPVLIRSSLHVALPLLLFALLCMPLAFLFGVVTAVGHVKWLVVIICIISVLFFSWAIFVLGPHVMLQRSYVSPKYAGDFLVTFMQYKDIIGLFVSLIKFLFCGCY", "length": 694, "header": "tr|F4JVF4-1|F4JVF4_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN=DL3235W PE=4 SV=1 CANONICAL=F4JVF4-1" }, "locus": { "chromosome": "4", "start_pos": 8289644, "end_pos": 8292083, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14390.1", "url": "https://www.ensemblgenomes.org/id/AT4G14390.1" }, { "database": "Ensembl Peptide", "id": "AT4G14390.1", "url": "https://www.ensemblgenomes.org/id/AT4G14390.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 684, "end_pos": 684, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JVF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVF4" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "iPTMnet", "id": "A0A1P8B807", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B807" } ], "site_lbl": "Ser684" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B807", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B807" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "F4JVF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVF4" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B807", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B807" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G14390", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G14390", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4JVF4", "url": "https://www.uniprot.org/uniprotkb/F4JVF4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JVF4", "url": "https://www.uniprot.org/uniprotkb/F4JVF4" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JVF4", "url": "https://www.uniprot.org/uniprotkb/F4JVF4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" }, { "start_pos": 545, "end_pos": 547, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JVF4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 694, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JVF4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JVF4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JVF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JVF4" }, { "id": "PF13962", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13962" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PGG", "eco_id": "ECO_0000259", "start_pos": 514, "end_pos": 621, "start_aa": "Asn", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 684 ], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 44, "end_pos": 46 }, { "start_pos": 545, "end_pos": 547 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JSP7-1", "uniprot_ac": "F4JSP7", "uniprot_id": "F4JSP7_ARATH", "mass": { "chemical_mass": 305914.0, "monoisotopic_mass": 305914.0 }, "refseq": {}, "gene_names": [ { "name": "F28M20.240", "type": "synonym", "evidence": [ { "id": "F4JSP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSP7" } ] }, { "name": "F28M20_240", "type": "synonym", "evidence": [ { "id": "F4JSP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSP7" } ] } ], "protein_names": [ { "name": "Nucleoporin", "type": "synonym", "evidence": [ { "id": "F4JSP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSP7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JSP7", "url": "https://www.uniprot.org/uniprotkb/F4JSP7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JSP7", "locus": {} } ], "crossref": [ { "id": "AT4G31570", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G31570", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "829284", "url": "https://www.ncbi.nlm.nih.gov/gene/829284", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G31570", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G31570", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR43939", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43939", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43939:SF50", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43939:SF50", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT4G31570", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G31570", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B863", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B863", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B863-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B863-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B864", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B864", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B864-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B864-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B866", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B866", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B866-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B866-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B868", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B868", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B868-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B868-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B875", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B875", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B875-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B875-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JSP7", "url": "https://www.uniprot.org/uniprotkb/F4JSP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JSP7-1", "url": "https://www.uniprot.org/uniprotkb/F4JSP7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKKKNRADPLAAGRQKLQQFRQKKADKGTDQKKDSKGSTSQGKSSKKSNKSEKHERKPDTSAVSDEAQAPSPVTVGGATSHVNVAEEVVDSPQTSSDTKAHEYVSVHGSSSEPDALQPGHTTSNDGSEARKEVVNSENDISKSLSTEEENVKSINSGVAGTVDSLISDPADSEKGVTHDDASNVDGIFAASGNIAEGEGVEVEGGSGNVEKPHQPSSLQEYIPDVSLIRARGDQVTDVGEMQEEDMEQFSELSAKAGVDKIATEERQTSYPAVVDSSASPSHFSEGSSVAFDTVELEGINGNFRSQQIREAAELNEEKPETSIDFPNNRDHVLSAEPEESSVAEMASQLQLPESVSISGVLSHEETRKIDTLNLSAELTSAHVHEGRSVSFLQLMDIVKGLGQDEYQILCNAREAASSTEPGTSSLERLREELFVSSTMEDILHVQLTEQSHLQIEFDHQHNQFVAEISQLRASYSAVTERNDSLAEELSECQSKLYAATSSNTNLENQLLATEAQVEDFTAKMNELQLSLEKSLLDLSETKEKFINLQVENDTLVAVISSMNDEKKELIEEKESKNYEIKHLSSELCNCKNLAAILKAEVEQFENTIGPLTDEKIHLVEEKYSLLGEAEKLQEELANCKTVVTLQEVENSNMKETLSLLTRQQTMFEENNIHLREENEKAHLELSAHLISETYLLSEYSNLKEGYTLLNNKLLKFQGEKEHLVEENDKLTQELLTLQEHMSTVEEERTHLEVELREAIARLDKLAEENTSLTSSIMVEKARMVDNGSADVSGLINQEISEKLGRSSEIGVSKQSASFLENTQYTNLEEVREYTSEFSALMKNLEKGEKMVQNLEEAIKQILTDSSVSKSSDKGATPAVSKLIQAFESKRKPEEPESENAQLTDDLSEADQFVSVNVQIRNLRGLLDQLLLNARKAGIQFNQLNDDRTSTNQRLEELNVEFASHQDHINVLEADTIESKVSFEALKHYSYELQHKNHDLELLCDSLKLRNDNISVENTELNKKLNYCSLRIDELEIQLENLQQNLTSFLSTMEEQLVALQDESERAMMVEHELTSLMSEFGEAVVRLDDCLLRSGTSGAHTGLDMTKRISGSVDVAVNVIEDLKEKLEAAYVKHESTSNKYEELKQSFNTLFEKNEFTASSMQKVYADLTKLITESCGSAEMTSLEVENVAVFDPFRDGSFENLLEAVRKILSERLELQSVIDKLQSDLSSKSNDMEEMTQRSLDSTSLRELVEKVEGLLELESGVIFESPSSQVEFLVSQLVQKFIEIEELANLLRKQLEAKGNELMEIEESLLHHKTKIAGLRESLTQAEESLVAVRSELQDKSNELEQSEQRLLSTREKLSIAVTKGKGLIVQRDNVKQSLAEASAKLQKCSEELNSKDARLVEVEKKLKTYIEAGERVEALESELSYIRNSATALRESFLLKDSLLHRIEEILEDLDLPEHFHARDILEKVEWLARSANGNSSRPSGWDQKSSDGGAGFVLSEPWREDVQTGTSSEDDLRIKFEELKGKFYGLAEQNEMLEQSLMERNTLVQRWEKLLENIDIPPQLHSMEVENKIEWLASTITEATHDRDNLQQKIDNLEVYCQSVTTDLEVSQKQVGDVEGNLQSCVSERVNLSERLESLIGDHESLSARGIHLEVENEKLQNQVKDLHEKLVEKLGNEEHFQTIEGDLLSLRYMIDDVIQEDGLQDLALASNSENLDGVLRKLIDYYKNLVKSSLPGETDDNVCETRPSDADVRSGESLGAHGATSHGQHFELSDSNVVEATSRDIAVVETPDVASLTKDLDQALHVQKLTREERDLYMAKQQSLVAENEALDKKIIELQEFLKQEEQKSASVREKLNVAVRKGKALVQQRDSLKQTIEEVNAELGRLKSEIIKRDEKLLENEKKFRELESYSVRVESLESECQLLKIHSQETEYLLQERSGNLSMTLNALNSIDIGDEGDINDPVMKLQRISQLFQTMSTTVTSAEQESRKSRRAAELLLAELNEVQETNDSLQEDLSKFTYEIQQLSREKDAAEAAKVEAISRFENLSAVSNEEKNKLYAQLLSCGTSVNSLRKILAGTNSCLADIFIMDMEFLHHLKANMELCAKKTGTDLSGLPQLSTENLVDKEIFARLSAAWSNINLHETSSGGNIAEICGSLSQNLDQFVVGVSHLEEKVSKHLATWHDQINIVSNSIDTFFKSIGTGTDSEVAALGERIALLHGACSSVLVEIERRKAELVGNDDFNMSLHQVDEDFSSMESVRSMVNRLSSAVKELVVANAETLERNEKEMKVIIANLQRELHEKDIQNNRTCNELVGQVKEAQAGAKIFAEDLQSASARMRDMQDQLGILVRERDSMKERVKELLAGQASHSELQEKVTSLSDLLAAKDLEIEALMQALDEEESQMEDLKLRVTELEQEVQQKNLDLQKAEASRGKISKKLSITVDKFDELHHLSENLLAEIEKLQQQVQDRDTEVSFLRQEVTRCTNEALAASQMGTKRDSEEIQTVLSWFDTIASLLGIEDSLSTDADSHINHYMETFEKRIASMLSEIDELRLVGQSKDVLLEGERSRVAELRQKEATLEKFLLEKESQQDISTSSTSEIVEVEPLINKWTKTSIPSQVRSLRKGNMDQVAISIDADQTDQSGSLEEDDDKDHSLRQESFLDSQDPSLTWSMVYGQTLFIHGSRSVVSCDRTLMRQPALRLGIMLYWAILHALLAAFVV", "length": 2730, "header": "tr|F4JSP7-1|F4JSP7_ARATH Isoform 1 of Nucleoporin OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSP7-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B863-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B863/entry", "sequence": { "sequence": "MDKKKNRADPLAAGRQKLQQFRQKKADKGTDQKKDSKGSTSQGKSSKKSNKSEKHERKPDTSAVSDEAQAPSPVTVGGATSHVNVAEEVVDSPQTSSDTKAHEYVSVHGSSSEPDALQPGHTTSNDGSEARKEVVNSENDISKSLSTEEENVKSINSGVAGTVDSLISDPADSEKGVTHDDASNVDGIFAASGNIAEGEGVEVEGGSGNVEKPHQPSSLQEYIPDVSLIRARGDQVTDEEDMEQFSELSAKAGVDKIATEERQTSYPAVVDSSASPSHFSEGSSVAFDTVELEGINGNFRSQQIREAAELNEEKPETSIDFPNNRDHVLSAEPEESSVAEMASQLQLPESVSISGVLSHEETRKIDTLNLSAELTSAHVHEGRSVSFLQLMDIVKGLGQDEYQILCNAREAASSTEPGTSSLERLREELFVSSTMEDILHVQLTEQSHLQIEFDHQHNQFVAEISQLRASYSAVTERNDSLAEELSECQSKLYAATSSNTNLENQLLATEAQVEDFTAKMNELQLSLEKSLLDLSETKEKFINLQVENDTLVAVISSMNDEKKELIEEKESKNYEIKHLSSELCNCKNLAAILKAEVEQFENTIGPLTDEKIHLVEEKYSLLGEAEKLQEELANCKTVVTLQEVENSNMKETLSLLTRQQTMFEENNIHLREENEKAHLELSAHLISETYLLSEYSNLKEGYTLLNNKLLKFQGEKEHLVEENDKLTQELLTLQEHMSTVEEERTHLEVELREAIARLDKLAEENTSLTSSIMVEKARMVDNGSADVSGLINQEISEKLGRSSEIGVSKQSASFLENTQYTNLEEVREYTSEFSALMKNLEKGEKMVQNLEEAIKQILTDSSVSKSSDKGATPAVSKLIQAFESKRKPEEPESENAQLTDDLSEADQFVSVNVQIRNLRGLLDQLLLNARKAGIQFNQLNDDRTSTNQRLEELNVEFASHQDHINVLEADTIESKVSFEALKHYSYELQHKNHDLELLCDSLKLRNDNISVENTELNKKLNYCSLRIDELEIQLENLQQNLTSFLSTMEEQLVALQDESERAMMVEHELTSLMSEFGEAVVRLDDCLLRSGTSGAHTGLDMTKRISGSVDVAVNVIEDLKEKLEAAYVKHESTSNKYEELKQSFNTLFEKNEFTASSMQKVYADLTKLITESCGSAEMTSLEVENVAVFDPFRDGSFENLLEAVRKILSERLELQSVIDKLQSDLSSKSNDMEEMTQRSLDSTSLRELVEKVEGLLELESGVIFESPSSQVEFLVSQLVQKFIEIEELANLLRKQLEAKGNELMEIEESLLHHKTKIAGLRESLTQAEESLVAVRSELQDKSNELEQSEQRLLSTREKLSIAVTKGKGLIVQRDNVKQSLAEASAKLQKCSEELNSKDARLVEVEKKLKTYIEAGERVEALESELSYIRNSATALRESFLLKDSLLHRIEEILEDLDLPEHFHARDILEKVEWLARSANGNSSRPSGWDQKSSDGGAGFVLSEPWREDVQTGTSSEDDLRIKFEELKGKFYGLAEQNEMLEQSLMERNTLVQRWEKLLENIDIPPQLHSMEVENKIEWLASTITEATHDRDNLQQKIDNLEVYCQSVTTDLEVSQKQVGDVEGNLQSCVSERVNLSERLESLIGDHESLSARGIHLEVENEKLQNQVKDLHEKLVEKLGNEEHFQTIEGDLLSLRYMIDDVIQEDGLQDLALASNSENLDGVLRKLIDYYKNLVKSSLPGETDDNVCETRPSDADVRSGESLGAHGATSHGQHFELSDSNVVEATSRDIAVVETPDVASLTKDLDQALHVQKLTREERDLYMAKQQSLVAENEALDKKIIELQEFLKQEEQKSASVREKLNVAVRKGKALVQQRDSLKQTIEEVNAELGRLKSEIIKRDEKLLENEKKFRELESYSVRVESLESECQLLKIHSQETEYLLQERSGNLSMTLNALNSIDIGDEGDINDPVMKLQRISQLFQTMSTTVTSAEQESRKSRRAAELLLAELNEVQETNDSLQEDLSKFTYEIQQLSREKDAAEAAKVEAISRFENLSAVSNEEKNKLYAQLLSCGTSVNSLRKILAGTNSCLADIFIMDMEFLHHLKANMELCAKKTGTDLSGLPQLSTENLVDKEIFARLSAAWSNINLHETSSGGNIAEICGSLSQNLDQFVVGVSHLEEKVSKHLATWHDQINIVSNSIDTFFKSIGTGTDSEVAALGERIALLHGACSSVLVEIERRKAELVGNDDFNMSLHQVDEDFSSMESVRSMVNRLSSAVKELVVANAETLERNEKEMKVIIANLQRELHEKDIQNNRTCNELVGQVKEAQAGAKIFAEDLQSASARMRDMQDQLGILVRERDSMKERVKELLAGQASHSELQEKVTSLSDLLAAKDLEIEALMQALDEEESQMEDLKLRVTELEQEVQQKNLDLQKAEASRGKISKKLSITVDKFDELHHLSENLLAEIEKLQQQVQDRDTEVSFLRQEVTRCTNEALAASQMGTKRDSEEIQTVLSWFDTIASLLGIEDSLSTDADSHINHYMETFEKRIASMLSEIDELRLVGQSKDVLLEGERSRVAELRQKEATLEKFLLEKESQQDISTSSTSEIVEVEPLINKWTKTSIPSQVRSLRKGNMDQVAISIDADQTDQSGSLEEDDDKAHGFRSLSTSRIIPRFTRPITNMVDGLWVSCDRTLMRQPALRLGIMLYWAILHALLAAFVV", "length": 2718, "header": "tr|A0A1P8B863-1|F4JSP7_ARATH Computationally mapped isoform of Nucleoporin OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSP7-1" }, "locus": { "chromosome": "4", "start_pos": 15296427, "end_pos": 15306475, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G31570.4", "url": "https://www.ensemblgenomes.org/id/AT4G31570.4" }, { "database": "Ensembl Peptide", "id": "AT4G31570.4", "url": "https://www.ensemblgenomes.org/id/AT4G31570.4" } ] } }, { "isoform_ac": "A0A1P8B864-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B864/entry", "sequence": { "sequence": "MDKKKNRADPLAAGRQKLQQFRQKKADKGTDQKKDSKGSTSQGKSSKKSNKSEKHERKPDTSAVSDEAQAPSPVTVGGATSHVNVAEEVVDSPQTSSDTKAHEYVSVHGSSSEPDALQPGHTTSNDGSEARKEVVNSENDISKSLSTEEENVKSINSGVAGTVDSLISDPADSEKGVTHDDASNVDGIFAASGNIAEGEGVEVEGGSGNVEKPHQPSSLQEYIPDVSLIRARGDQVTDEEDMEQFSELSAKAGVDKIATEERQTSYPAVVDSSASPSHFSEGSSVAFDTVELEGINGNFRSQQIREAAELNEEKPETSIDFPNNRDHVLSAEPEESSVAEMASQLQLPESVSISGVLSHEETRKIDTLNLSAELTSAHVHEGRSVSFLQLMDIVKGLGQDEYQILCNAREAASSTEPGTSSLERLREELFVSSTMEDILHVQLTEQSHLQIEFDHQHNQFVAEISQLRASYSAVTERNDSLAEELSECQSKLYAATSSNTNLENQLLATEAQVEDFTAKMNELQLSLEKSLLDLSETKEKFINLQVENDTLVAVISSMNDEKKELIEEKESKNYEIKHLSSELCNCKNLAAILKAEVEQFENTIGPLTDEKIHLVEEKYSLLGEAEKLQEELANCKTVVTLQEVENSNMKETLSLLTRQQTMFEENNIHLREENEKAHLELSAHLISETYLLSEYSNLKEGYTLLNNKLLKFQGEKEHLVEENDKLTQELLTLQEHMSTVEEERTHLEVELREAIARLDKLAEENTSLTSSIMVEKARMVDNGSADVSGLINQEISEKLGRSSEIGVSKQSASFLENTQYTNLEEVREYTSEFSALMKNLEKGEKMVQNLEEAIKQILTDSSVSKSSDKGATPAVSKLIQAFESKRKPEEPESENAQLTDDLSEADQFVSVNVQIRNLRGLLDQLLLNARKAGIQFNQLNDDRTSTNQRLEELNVEFASHQDHINVLEADTIESKVSFEALKHYSYELQHKNHDLELLCDSLKLRNDNISVENTELNKKLNYCSLRIDELEIQLENLQQNLTSFLSTMEEQLVALQDESERAMMVEHELTSLMSEFGEAVVRLDDCLLRSGTSGAHTGLDMTKRISGSVDVAVNVIEDLKEKLEAAYVKHESTSNKYEELKQSFNTLFEKNEFTASSMQKVYADLTKLITESCGSAEMTSLEVENVAVFDPFRDGSFENLLEAVRKILSERLELQSVIDKLQSDLSSKSNDMEEMTQRSLDSTSLRELVEKVEGLLELESGVIFESPSSQVEFLVSQLVQKFIEIEELANLLRKQLEAKGNELMEIEESLLHHKTKIAGLRESLTQAEESLVAVRSELQDKSNELEQSEQRLLSTREKLSIAVTKGKGLIVQRDNVKQSLAEASAKLQKCSEELNSKDARLVEVEKKLKTYIEAGERVEALESELSYIRNSATALRESFLLKDSLLHRIEEILEDLDLPEHFHARDILEKVEWLARSANGNSSRPSGWDQKSSDGGAGFVLSEPWREDVQTGTSSEDDLRIKFEELKGKFYGLAEQNEMLEQSLMERNTLVQRWEKLLENIDIPPQLHSMEVENKIEWLASTITEATHDRDNLQQKIDNLEVYCQSVTTDLEVSQKQVGDVEGNLQSCVSERVNLSERLESLIGDHESLSARGIHLEVENEKLQNQVKDLHEKLVEKLGNEEHFQTIEGDLLSLRYMIDDVIQEDGLQDLALASNSENLDGVLRKLIDYYKNLVKSSLPGETDDNVCETRPSDADVRSGESLGAHGATSHGQHFELSDSNVVEATSRDIAVVETPDVASLTKDLDQALHVQKLTREERDLYMAKQQSLVAENEALDKKIIELQEFLKQEEQKSASVREKLNVAVRKGKALVQQRDSLKQTIEEVNAELGRLKSEIIKRDEKLLENEKKFRELESYSVRVESLESECQLLKIHSQETEYLLQERSGNLSMTLNALNSIDIGDEGDINDPVMKLQRISQLFQTMSTTVTSAEQESRKSRRAAELLLAELNEVQETNDSLQEDLSKFTYEIQQLSREKDAAEAAKVEAISRFENLSAVSNEEKNKLYAQLLSCGTSVNSLRKILAGTNSCLADIFIMDMEFLHHLKANMELCAKKTGTDLSGLPQLSTENLVDKEIFARLSAAWSNINLHETSSGGNIAEICGSLSQNLDQFVVGVSHLEEKVSKHLATWHDQINIVSNSIDTFFKSIGTGTDSEVAALGERIALLHGACSSVLVEIERRKAELVGNDDFNMSLHQVDEDFSSMESVRSMVNRLSSAVKELVVANAETLERNEKEMKVIIANLQRELHEKDIQNNRTCNELVGQVKEAQAGAKIFAEDLQSASARMRDMQDQLGILVRERDSMKERVKELLAGQASHSELQEKVTSLSDLLAAKDLEIEALMQALDEEESQMEDLKLRVTELEQEVQQKNLDLQKAEASRGKISKKLSITVDKFDELHHLSENLLAEIEKLQQQVQDRDTEVSFLRQEVTRCTNEALAASQMGTKRDSEEIQTVLSWFDTIASLLGIEDSLSTDADSHINHYMETFEKRIASMLSEIDELRLVGQSKDVLLEGERSRVAELRQKEATLEKFLLEKESQQDISTSSTSEIVEVEPLINKWTKTSIPSQVRSLRKGNMDQVAISIDADQTDQSGSLEEDDDKDHSLRQESFLDSQDPSLTWSMVYGQTLFIHGSRSVVSCDRTLMRQPALRLGIMLYWAILHALLAAFVV", "length": 2725, "header": "tr|A0A1P8B864-1|F4JSP7_ARATH Computationally mapped isoform of Nucleoporin OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSP7-1" }, "locus": { "chromosome": "4", "start_pos": 15296451, "end_pos": 15306410, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G31570.5", "url": "https://www.ensemblgenomes.org/id/AT4G31570.5" }, { "database": "Ensembl Peptide", "id": "AT4G31570.5", "url": "https://www.ensemblgenomes.org/id/AT4G31570.5" } ] } }, { "isoform_ac": "A0A1P8B866-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B866/entry", "sequence": { "sequence": "MDKKKNRADPLAAGRQKLQQFRQKKADKGTDQKKDSKGSTSQGKSSKKSNKSEKHERKPDTSAVSDEAQAPSPVTVGGATSHVNVAEEVVDSPQTSSDTKAHEYVSVHGSSSEPDALQPGHTTSNDGSEARKEVVNSENDISKSLSTEEENVKSINSGVAGTVDSLISDPADSEKGVTHDDASNVDGIFAASGNIAEGEGVEVEGGSGNVEKPHQPSSLQEYIPDVSLIRARGDQVTDVGEMQEEDMEQFSELSAKAGVDKIATEERQTSYPAVVDSSASPSHFSEGSSVAFDTVELEAEPEESSVAEMASQLQLPESVSISGVLSHEETRKIDTLNLSAELTSAHVHEGRSVSFLQLMDIVKGLGQDEYQILCNAREAASSTEPGTSSLERLREELFVSSTMEDILHVQLTEQSHLQIEFDHQHNQFVAEISQLRASYSAVTERNDSLAEELSECQSKLYAATSSNTNLENQLLATEAQVEDFTAKMNELQLSLEKSLLDLSETKEKFINLQVENDTLVAVISSMNDEKKELIEEKESKNYEIKHLSSELCNCKNLAAILKAEVEQFENTIGPLTDEKIHLVEEKYSLLGEAEKLQEELANCKTVVTLQEVENSNMKETLSLLTRQQTMFEENNIHLREENEKAHLELSAHLISETYLLSEYSNLKEGYTLLNNKLLKFQGEKEHLVEENDKLTQELLTLQEHMSTVEEERTHLEVELREAIARLDKLAEENTSLTSSIMVEKARMVDNGSADVSGLINQEISEKLGRSSEIGVSKQSASFLENTQYTNLEEVREYTSEFSALMKNLEKGEKMVQNLEEAIKQILTDSSVSKSSDKGATPAVSKLIQAFESKRKPEEPESENAQLTDDLSEADQFVSVNVQIRNLRGLLDQLLLNARKAGIQFNQLNDDRTSTNQRLEELNVEFASHQDHINVLEADTIESKVSFEALKHYSYELQHKNHDLELLCDSLKLRNDNISVENTELNKKLNYCSLRIDELEIQLENLQQNLTSFLSTMEEQLVALQDESERAMMVEHELTSLMSEFGEAVVRLDDCLLRSGTSGAHTGLDMTKRISGSVDVAVNVIEDLKEKLEAAYVKHESTSNKYEELKQSFNTLFEKNEFTASSMQKVYADLTKLITESCGSAEMTSLEVENVAVFDPFRDGSFENLLEAVRKILSERLELQSVIDKLQSDLSSKSNDMEEMTQRSLDSTSLRELVEKVEGLLELESGVIFESPSSQVEFLVSQLVQKFIEIEELANLLRKQLEAKGNELMEIEESLLHHKTKIAGLRESLTQAEESLVAVRSELQDKSNELEQSEQRLLSTREKLSIAVTKGKGLIVQRDNVKQSLAEASAKLQKCSEELNSKDARLVEVEKKLKTYIEAGERVEALESELSYIRNSATALRESFLLKDSLLHRIEEILEDLDLPEHFHARDILEKVEWLARSANGNSSRPSGWDQKSSDGGAGFVLSEPWREDVQTGTSSEDDLRIKFEELKGKFYGLAEQNEMLEQSLMERNTLVQRWEKLLENIDIPPQLHSMEVENKIEWLASTITEATHDRDNLQQKIDNLEVYCQSVTTDLEVSQKQVGDVEGNLQSCVSERVNLSERLESLIGDHESLSARGIHLEVENEKLQNQVKDLHEKLVEKLGNEEHFQTIEGDLLSLRYMIDDVIQEDGLQDLALASNSENLDGVLRKLIDYYKNLVKSSLPGETDDNVCETRPSDADVRSGESLGAHGATSHGQHFELSDSNVVEATSRDIAVVETPDVASLTKDLDQALHVQKLTREERDLYMAKQQSLVAENEALDKKIIELQEFLKQEEQKSASVREKLNVAVRKGKALVQQRDSLKQTIEEVNAELGRLKSEIIKRDEKLLENEKKFRELESYSVRVESLESECQLLKIHSQETEYLLQERSGNLSMTLNALNSIDIGDEGDINDPVMKLQRISQLFQTMSTTVTSAEQESRKSRRAAELLLAELNEVQETNDSLQEDLSKFTYEIQQLSREKDAAEAAKVEAISRFENLSAVSNEEKNKLYAQLLSCGTSVNSLRKILAGTNSCLADIFIMDMEFLHHLKANMELCAKKTGTDLSGLPQLSTENLVDKEIFARLSAAWSNINLHETSSGGNIAEICGSLSQNLDQFVVGVSHLEEKVSKHLATWHDQINIVSNSIDTFFKSIGTGTDSEVAALGERIALLHGACSSVLVEIERRKAELVGNDDFNMSLHQVDEDFSSMESVRSMVNRLSSAVKELVVANAETLERNEKEMKVIIANLQRELHEKDIQNNRTCNELVGQVKEAQAGAKIFAEDLQSASARMRDMQDQLGILVRERDSMKERVKELLAGQASHSELQEKVTSLSDLLAAKDLEIEALMQALDEEESQMEDLKLRVTELEQEVQQKNLDLQKAEASRGKISKKLSITVDKFDELHHLSENLLAEIEKLQQQVQDRDTEVSFLRQEVTRCTNEALAASQMGTKRDSEEIQTVLSWFDTIASLLGIEDSLSTDADSHINHYMETFEKRIASMLSEIDELRLVGQSKDVLLEGERSRVAELRQKEATLEKFLLEKESQQDISTSSTSEIVEVEPLINKWTKTSIPSQVRSLRKGNMDQVAISIDADQTDQSGSLEEDDDKAHGFRSLSTSRIIPRFTRPITNMVDGLWVSCDRTLMRQPALRLGIMLYWAILHALLAAFVV", "length": 2686, "header": "tr|A0A1P8B866-1|F4JSP7_ARATH Computationally mapped isoform of Nucleoporin OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSP7-1" }, "locus": { "chromosome": "4", "start_pos": 15296413, "end_pos": 15306411, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G31570.3", "url": "https://www.ensemblgenomes.org/id/AT4G31570.3" }, { "database": "Ensembl Peptide", "id": "AT4G31570.3", "url": "https://www.ensemblgenomes.org/id/AT4G31570.3" } ] } }, { "isoform_ac": "A0A1P8B868-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B868/entry", "sequence": { "sequence": "MQEEDMEQFSELSAKAGVDKIATEERQTSYPAVVDSSASPSHFSEGSSVAFDTVELEGINGNFRSQQIREAAELNEEKPETSIDFPNNRDHVLSAEPEESSVAEMASQLQLPESVSISGVLSHEETRKIDTLNLSAELTSAHVHEGRSVSFLQLMDIVKGLGQDEYQILCNAREAASSTEPGTSSLERLREELFVSSTMEDILHVQLTEQSHLQIEFDHQHNQFVAEISQLRASYSAVTERNDSLAEELSECQSKLYAATSSNTNLENQLLATEAQVEDFTAKMNELQLSLEKSLLDLSETKEKFINLQVENDTLVAVISSMNDEKKELIEEKESKNYEIKHLSSELCNCKNLAAILKAEVEQFENTIGPLTDEKIHLVEEKYSLLGEAEKLQEELANCKTVVTLQEVENSNMKETLSLLTRQQTMFEENNIHLREENEKAHLELSAHLISETYLLSEYSNLKEGYTLLNNKLLKFQGEKEHLVEENDKLTQELLTLQEHMSTVEEERTHLEVELREAIARLDKLAEENTSLTSSIMVEKARMVDNGSADVSGLINQEISEKLGRSSEIGVSKQSASFLENTQYTNLEEVREYTSEFSALMKNLEKGEKMVQNLEEAIKQILTDSSVSKSSDKGATPAVSKLIQAFESKRKPEEPESENAQLTDDLSEADQFVSVNVQIRNLRGLLDQLLLNARKAGIQFNQLNDDRTSTNQRLEELNVEFASHQDHINVLEADTIESKVSFEALKHYSYELQHKNHDLELLCDSLKLRNDNISVENTELNKKLNYCSLRIDELEIQLENLQQNLTSFLSTMEEQLVALQDESERAMMVEHELTSLMSEFGEAVVRLDDCLLRSGTSGAHTGLDMTKRISGSVDVAVNVIEDLKEKLEAAYVKHESTSNKYEELKQSFNTLFEKNEFTASSMQKVYADLTKLITESCGSAEMTSLEVENVAVFDPFRDGSFENLLEAVRKILSERLELQSVIDKLQSDLSSKSNDMEEMTQRSLDSTSLRELVEKVEGLLELESGVIFESPSSQVEFLVSQLVQKFIEIEELANLLRKQLEAKGNELMEIEESLLHHKTKIAGLRESLTQAEESLVAVRSELQDKSNELEQSEQRLLSTREKLSIAVTKGKGLIVQRDNVKQSLAEASAKLQKCSEELNSKDARLVEVEKKLKTYIEAGERVEALESELSYIRNSATALRESFLLKDSLLHRIEEILEDLDLPEHFHARDILEKVEWLARSANGNSSRPSGWDQKSSDGGAGFVLSEPWREDVQTGTSSEDDLRIKFEELKGKFYGLAEQNEMLEQSLMERNTLVQRWEKLLENIDIPPQLHSMEVENKIEWLASTITEATHDRDNLQQKIDNLEVYCQSVTTDLEVSQKQVGDVEGNLQSCVSERVNLSERLESLIGDHESLSARGIHLEVENEKLQNQVKDLHEKLVEKLGNEEHFQTIEGDLLSLRYMIDDVIQEDGLQDLALASNSENLDGVLRKLIDYYKNLVKSSLPGETDDNVCETRPSDADVRSGESLGAHGATSHGQHFELSDSNVVEATSRDIAVVETPDVASLTKDLDQALHVQKLTREERDLYMAKQQSLVAENEALDKKIIELQEFLKQEEQKSASVREKLNVAVRKGKALVQQRDSLKQTIEEVNAELGRLKSEIIKRDEKLLENEKKFRELESYSVRVESLESECQLLKIHSQETEYLLQERSGNLSMTLNALNSIDIGDEGDINDPVMKLQRISQLFQTMSTTVTSAEQESRKSRRAAELLLAELNEVQETNDSLQEDLSKFTYEIQQLSREKDAAEAAKVEAISRFENLSAVSNEEKNKLYAQLLSCGTSVNSLRKILAGTNSCLADIFIMDMEFLHHLKANMELCAKKTGTDLSGLPQLSTENLVDKEIFARLSAAWSNINLHETSSGGNIAEICGSLSQNLDQFVVGVSHLEEKVSKHLATWHDQINIVSNSIDTFFKSIGTGTDSEVAALGERIALLHGACSSVLVEIERRKAELVGNDDFNMSLHQVDEDFSSMESVRSMVNRLSSAVKELVVANAETLERNEKEMKVIIANLQRELHEKDIQNNRTCNELVGQVKEAQAGAKIFAEDLQSASARMRDMQDQLGILVRERDSMKERVKELLAGQASHSELQEKVTSLSDLLAAKDLEIEALMQALDEEESQMEDLKLRVTELEQEVQQKNLDLQKAEASRGKISKKLSITVDKFDELHHLSENLLAEIEKLQQQVQDRDTEVSFLRQEVTRCTNEALAASQMGTKRDSEEIQTVLSWFDTIASLLGIEDSLSTDADSHINHYMETFEKRIASMLSEIDELRLVGQSKDVLLEGERSRVAELRQKEATLEKFLLEKESQQDISTSSTSEIVEVEPLINKWTKTSIPSQVRSLRKGNMDQVAISIDADQTDQSGSLEEDDDKAHGFRSLSTSRIIPRFTRPITNMVDGLWVSCDRTLMRQPALRLGIMLYWAILHALLAAFVV", "length": 2482, "header": "tr|A0A1P8B868-1|F4JSP7_ARATH Computationally mapped isoform of Nucleoporin OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSP7-1" }, "locus": { "chromosome": "4", "start_pos": 15296954, "end_pos": 15306410, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G31570.6", "url": "https://www.ensemblgenomes.org/id/AT4G31570.6" }, { "database": "Ensembl Peptide", "id": "AT4G31570.6", "url": "https://www.ensemblgenomes.org/id/AT4G31570.6" } ] } }, { "isoform_ac": "A0A1P8B875-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B875/entry", "sequence": { "sequence": "MDKKKNRADPLAAGRQKLQQFRQKKADKGTDQKKDSKGSTSQGKSSKKSNKSEKHERKPDTSAVSDEAQAPSPVTVGGATSHVNVAEEVVDSPQTSSDTKAHEYVSVHGSSSEPDALQPGHTTSNDGSEARKEVVNSENDISKSLSTEEENVKSINSGVAGTVDSLISDPADSEKGVTHDDASNVDGIFAASGNIAEGEGVEVEGGSGNVEKPHQPSSLQEYIPDVSLIRARGDQVTDVGEMQEEDMEQFSELSAKAGVDKIATEERQTSYPAVVDSSASPSHFSEGSSVAFDTVELEGINGNFRSQQIREAAELNEEKPETSIDFPNNRDHVLSAEPEESSVAEMASQLQLPESVSISGVLSHEETRKIDTLNLSAELTSAHVHEGRSVSFLQLMDIVKGLGQDEYQILCNAREAASSTEPGTSSLERLREELFVSSTMEDILHVQLTEQSHLQIEFDHQHNQFVAEISQLRASYSAVTERNDSLAEELSECQSKLYAATSSNTNLENQLLATEAQVEDFTAKMNELQLSLEKSLLDLSETKEKFINLQVENDTLVAVISSMNDEKKELIEEKESKNYEIKHLSSELCNCKNLAAILKAEVEQFENTIGPLTDEKIHLVEEKYSLLGEAEKLQEELANCKTVVTLQEVENSNMKETLSLLTRQQTMFEENNIHLREENEKAHLELSAHLISETYLLSEYSNLKEGYTLLNNKLLKFQGEKEHLVEENDKLTQELLTLQEHMSTVEEERTHLEVELREAIARLDKLAEENTSLTSSIMVEKARMVDNGSADVSGLINQEISEKLGRSSEIGVSKQSASFLENTQYTNLEEVREYTSEFSALMKNLEKGEKMVQNLEEAIKQILTDSSVSKSSDKGATPAVSKLIQAFESKRKPEEPESENAQLTDDLSEADQFVSVNVQIRNLRGLLDQLLLNARKAGIQFNQLNDDRTSTNQRLEELNVEFASHQDHINVLEADTIESKVSFEALKHYSYELQHKNHDLELLCDSLKLRNDNISVENTELNKKLNYCSLRIDELEIQLENLQQNLTSFLSTMEEQLVALQDESERAMMVEHELTSLMSEFGEAVVRLDDCLLRSGTSGAHTGLDMTKRISGSVDVAVNVIEDLKEKLEAAYVKHESTSNKYEELKQSFNTLFEKNEFTASSMQKVYADLTKLITESCGSAEMTSLEVENVAVFDPFRDGSFENLLEAVRKILSERLELQSVIDKLQSDLSSKSNDMEEMTQRSLDSTSLRELVEKVEGLLELESGVIFESPSSQVEFLVSQLVQKFIEIEELANLLRKQLEAKGNELMEIEESLLHHKTKIAGLRESLTQAEESLVAVRSELQDKSNELEQSEQRLLSTREKLSIAVTKGKGLIVQRDNVKQSLAEASAKLQKCSEELNSKDARLVEVEKKLKTYIEAGERVEALESELSYIRNSATALRESFLLKDSLLHRIEEILEDLDLPEHFHARDILEKVEWLARSANGNSSRPSGWDQKSSDGGAGFVLSEPWREDVQTGTSSEDDLRIKFEELKGKFYGLAEQNEMLEQSLMERNTLVQRWEKLLENIDIPPQLHSMEVENKIEWLASTITEATHDRDNLQQKIDNLEVYCQSVTTDLEVSQKQVGDVEGNLQSCVSERVNLSERLESLIGDHESLSARGIHLEVENEKLQNQVKDLHEKLVEKLGNEEHFQTIEGDLLSLRYMIDDVIQEDGLQDLALASNSENLDGVLRKLIDYYKNLVKSSLPGETDDNVCETRPSDADVRSGESLGAHGATSHGQHFELSDSNVVEATSRDIAVVETPDVASLTKDLDQALHVQKLTREERDLYMAKQQSLVAENEALDKKIIELQEFLKQEEQKSASVREKLNVAVRKGKALVQQRDSLKQTIEEVNAELGRLKSEIIKRDEKLLENEKKFRELESYSVRVESLESECQLLKIHSQETEYLLQERSGNLSMTLNALNSIDIGDEGDINDPVMKLQRISQLFQTMSTTVTSAEQESRKSRRAAELLLAELNEVQETNDSLQEDLSKFTYEIQQLSREKDAAEAAKVEAISRFENLSAVSNEEKNKLYAQLLSCGTSVNSLRKILAGTNSCLADIFIMDMEFLHHLKANMELCAKKTGTDLSGLPQLSTENLVDKEIFARLSAAWSNINLHETSSGGNIAEICGSLSQNLDQFVVGVSHLEEKVSKHLATWHDQINIVSNSIDTFFKSIGTGTDSEVAALGERIALLHGACSSVLVEIERRKAELVGNDDFNMSLHQVDEDFSSMESVRSMVNRLSSAVKELVVANAETLERNEKEMKVIIANLQRELHEKDIQNNRTCNELVGQVKEAQAGAKIFAEDLQSASARMRDMQDQLGILVRERDSMKERVKELLAGQASHSELQEKVTSLSDLLAAKDLEIEALMQALDEEESQMEDLKLRVTELEQEVQQKNLDLQKAEASRGKISKKLSITVDKFDELHHLSENLLAEIEKLQQQVQDRDTEVSFLRQEVTRCTNEALAASQMGTKRDSEEIQTVLSWFDTIASLLGIEDSLSTDADSHINHYMETFEKRIASMLSEIDELRLVGQSKDVLLEGERSRVAELRQKEATLEKFLLEKESQQDISTSSTSEIVEVEPLINKWTKTSIPSQVRSLRKGNMDQVAISIDADQTDQSGSLEEDDDKAHGFRSLSTSRIIPRFTRPITNMVDGLWVSCDRTLMRQPALRLGIMLYWAILHALLAAFVV", "length": 2723, "header": "tr|A0A1P8B875-1|F4JSP7_ARATH Computationally mapped isoform of Nucleoporin OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSP7-1" }, "locus": { "chromosome": "4", "start_pos": 15296386, "end_pos": 15306480, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G31570.2", "url": "https://www.ensemblgenomes.org/id/AT4G31570.2" }, { "database": "Ensembl Peptide", "id": "AT4G31570.2", "url": "https://www.ensemblgenomes.org/id/AT4G31570.2" } ] } }, { "isoform_ac": "F4JSP7-1", "url": "https://www.uniprot.org/uniprotkb/F4JSP7/entry", "sequence": { "sequence": "MDKKKNRADPLAAGRQKLQQFRQKKADKGTDQKKDSKGSTSQGKSSKKSNKSEKHERKPDTSAVSDEAQAPSPVTVGGATSHVNVAEEVVDSPQTSSDTKAHEYVSVHGSSSEPDALQPGHTTSNDGSEARKEVVNSENDISKSLSTEEENVKSINSGVAGTVDSLISDPADSEKGVTHDDASNVDGIFAASGNIAEGEGVEVEGGSGNVEKPHQPSSLQEYIPDVSLIRARGDQVTDVGEMQEEDMEQFSELSAKAGVDKIATEERQTSYPAVVDSSASPSHFSEGSSVAFDTVELEGINGNFRSQQIREAAELNEEKPETSIDFPNNRDHVLSAEPEESSVAEMASQLQLPESVSISGVLSHEETRKIDTLNLSAELTSAHVHEGRSVSFLQLMDIVKGLGQDEYQILCNAREAASSTEPGTSSLERLREELFVSSTMEDILHVQLTEQSHLQIEFDHQHNQFVAEISQLRASYSAVTERNDSLAEELSECQSKLYAATSSNTNLENQLLATEAQVEDFTAKMNELQLSLEKSLLDLSETKEKFINLQVENDTLVAVISSMNDEKKELIEEKESKNYEIKHLSSELCNCKNLAAILKAEVEQFENTIGPLTDEKIHLVEEKYSLLGEAEKLQEELANCKTVVTLQEVENSNMKETLSLLTRQQTMFEENNIHLREENEKAHLELSAHLISETYLLSEYSNLKEGYTLLNNKLLKFQGEKEHLVEENDKLTQELLTLQEHMSTVEEERTHLEVELREAIARLDKLAEENTSLTSSIMVEKARMVDNGSADVSGLINQEISEKLGRSSEIGVSKQSASFLENTQYTNLEEVREYTSEFSALMKNLEKGEKMVQNLEEAIKQILTDSSVSKSSDKGATPAVSKLIQAFESKRKPEEPESENAQLTDDLSEADQFVSVNVQIRNLRGLLDQLLLNARKAGIQFNQLNDDRTSTNQRLEELNVEFASHQDHINVLEADTIESKVSFEALKHYSYELQHKNHDLELLCDSLKLRNDNISVENTELNKKLNYCSLRIDELEIQLENLQQNLTSFLSTMEEQLVALQDESERAMMVEHELTSLMSEFGEAVVRLDDCLLRSGTSGAHTGLDMTKRISGSVDVAVNVIEDLKEKLEAAYVKHESTSNKYEELKQSFNTLFEKNEFTASSMQKVYADLTKLITESCGSAEMTSLEVENVAVFDPFRDGSFENLLEAVRKILSERLELQSVIDKLQSDLSSKSNDMEEMTQRSLDSTSLRELVEKVEGLLELESGVIFESPSSQVEFLVSQLVQKFIEIEELANLLRKQLEAKGNELMEIEESLLHHKTKIAGLRESLTQAEESLVAVRSELQDKSNELEQSEQRLLSTREKLSIAVTKGKGLIVQRDNVKQSLAEASAKLQKCSEELNSKDARLVEVEKKLKTYIEAGERVEALESELSYIRNSATALRESFLLKDSLLHRIEEILEDLDLPEHFHARDILEKVEWLARSANGNSSRPSGWDQKSSDGGAGFVLSEPWREDVQTGTSSEDDLRIKFEELKGKFYGLAEQNEMLEQSLMERNTLVQRWEKLLENIDIPPQLHSMEVENKIEWLASTITEATHDRDNLQQKIDNLEVYCQSVTTDLEVSQKQVGDVEGNLQSCVSERVNLSERLESLIGDHESLSARGIHLEVENEKLQNQVKDLHEKLVEKLGNEEHFQTIEGDLLSLRYMIDDVIQEDGLQDLALASNSENLDGVLRKLIDYYKNLVKSSLPGETDDNVCETRPSDADVRSGESLGAHGATSHGQHFELSDSNVVEATSRDIAVVETPDVASLTKDLDQALHVQKLTREERDLYMAKQQSLVAENEALDKKIIELQEFLKQEEQKSASVREKLNVAVRKGKALVQQRDSLKQTIEEVNAELGRLKSEIIKRDEKLLENEKKFRELESYSVRVESLESECQLLKIHSQETEYLLQERSGNLSMTLNALNSIDIGDEGDINDPVMKLQRISQLFQTMSTTVTSAEQESRKSRRAAELLLAELNEVQETNDSLQEDLSKFTYEIQQLSREKDAAEAAKVEAISRFENLSAVSNEEKNKLYAQLLSCGTSVNSLRKILAGTNSCLADIFIMDMEFLHHLKANMELCAKKTGTDLSGLPQLSTENLVDKEIFARLSAAWSNINLHETSSGGNIAEICGSLSQNLDQFVVGVSHLEEKVSKHLATWHDQINIVSNSIDTFFKSIGTGTDSEVAALGERIALLHGACSSVLVEIERRKAELVGNDDFNMSLHQVDEDFSSMESVRSMVNRLSSAVKELVVANAETLERNEKEMKVIIANLQRELHEKDIQNNRTCNELVGQVKEAQAGAKIFAEDLQSASARMRDMQDQLGILVRERDSMKERVKELLAGQASHSELQEKVTSLSDLLAAKDLEIEALMQALDEEESQMEDLKLRVTELEQEVQQKNLDLQKAEASRGKISKKLSITVDKFDELHHLSENLLAEIEKLQQQVQDRDTEVSFLRQEVTRCTNEALAASQMGTKRDSEEIQTVLSWFDTIASLLGIEDSLSTDADSHINHYMETFEKRIASMLSEIDELRLVGQSKDVLLEGERSRVAELRQKEATLEKFLLEKESQQDISTSSTSEIVEVEPLINKWTKTSIPSQVRSLRKGNMDQVAISIDADQTDQSGSLEEDDDKDHSLRQESFLDSQDPSLTWSMVYGQTLFIHGSRSVVSCDRTLMRQPALRLGIMLYWAILHALLAAFVV", "length": 2730, "header": "tr|F4JSP7-1|F4JSP7_ARATH Isoform 1 of Nucleoporin OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSP7-1" }, "locus": { "chromosome": "4", "start_pos": 15297014, "end_pos": 15306410, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G31570.7", "url": "https://www.ensemblgenomes.org/id/AT4G31570.7" }, { "database": "Ensembl Peptide", "id": "AT4G31570.7", "url": "https://www.ensemblgenomes.org/id/AT4G31570.7" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B863", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B863" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B863", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B863" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G31570", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G31570", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JSP7", "url": "https://www.uniprot.org/uniprotkb/F4JSP7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JSP7", "url": "https://www.uniprot.org/uniprotkb/F4JSP7" } ], "pmid": "" }, { "name": "plasmodesma", "id": "GO:0009506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009506", "evidence": [ { "database": "UniProtKB", "id": "F4JSP7", "url": "https://www.uniprot.org/uniprotkb/F4JSP7" } ], "pmid": "" } ] } ] }, 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JSK0", "url": "https://www.uniprot.org/uniprotkb/F4JSK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JSK0-1", "url": "https://www.uniprot.org/uniprotkb/F4JSK0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSENEDSSSVRRRVSCTKCFDALWFCYSPFYQMQQYYRVGKLDDCTKKFSDLFDCLSLKTKRASEAERILEEQEKAAAEKHIWIMRTQEEAVSHWNETFGHLEDPNS", "length": 108, "header": "tr|F4JSK0-1|F4JSK0_ARATH Isoform 1 of Expressed protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSK0-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B879-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B879/entry", "sequence": { "sequence": "MSRWSNITSNGDDTGNDLAPFYQMQQYYRVGKLDDCTKKFSDLFDCLSLKTKRASEAERILEEQEKAAAEKHIWIMRTQEEAVSHWNETFGHLEDPNS", "length": 98, "header": "tr|A0A1P8B879-1|F4JSK0_ARATH Computationally mapped isoform of Expressed protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSK0-1" }, "locus": { "chromosome": "4", "start_pos": 12951277, "end_pos": 12952952, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G25315.3", "url": "https://www.ensemblgenomes.org/id/AT4G25315.3" }, { "database": "Ensembl Peptide", "id": "AT4G25315.3", "url": "https://www.ensemblgenomes.org/id/AT4G25315.3" } ] } }, { "isoform_ac": "F4JSK0-1", "url": "https://www.uniprot.org/uniprotkb/F4JSK0/entry", "sequence": { "sequence": "MSSENEDSSSVRRRVSCTKCFDALWFCYSPFYQMQQYYRVGKLDDCTKKFSDLFDCLSLKTKRASEAERILEEQEKAAAEKHIWIMRTQEEAVSHWNETFGHLEDPNS", "length": 108, "header": "tr|F4JSK0-1|F4JSK0_ARATH Isoform 1 of Expressed protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSK0-1" }, "locus": { "chromosome": "4", "start_pos": 12951109, "end_pos": 12952936, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G25315.2", "url": "https://www.ensemblgenomes.org/id/AT4G25315.2" }, { "database": "Ensembl Peptide", "id": "AT4G25315.2", "url": "https://www.ensemblgenomes.org/id/AT4G25315.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, 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"url": "https://www.uniprot.org/uniprotkb/F4JSG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JSG8-1", "url": "https://www.uniprot.org/uniprotkb/F4JSG8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLCASSSLALLGPPSSAMVTMASSPVSRFVGFGHHTILRYDNDQRLRRGCSWTGIEKKIPFPRKKTASASAYPLFRSQHTKDSSRPKNYKEVTKSARQMFAREISIQSKDSEISIAKVLFYIAAEDEAFLAVNRERDAQSLMKERESVQDQSDPSETDSEELLQLDGKSISEWVSEIDAISKEVEAELVSRDIGCHLVQVLEAVNTVLFDLRGFKRTSITLDPENSYLHSVLNCRCSTAFLISVIYIEVCKRLNVPIVGSPVGEDFLIWPKTEYPEELFKATSGQSLFSIVNGRCVDDPGSMASDLTAKSLQDLDMATNRDIIGIALANLIRLHWRRASKSSHGLMLTSPLSQLNNISSSNFPLLRPQDLRLAIAAAERLLILQPHNWALRRDLGMMLYYDRQYGEAVQELSICMAFAPPEEEAVLEPFVERLHLLRLISSLKPLGSDRLTVP", "length": 453, "header": "tr|F4JSG8-1|F4JSG8_ARATH Isoform 1 of Transglutaminase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JSG8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B8Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y1/entry", "sequence": { "sequence": "MDSQVLFYIAAEDEAFLAVNRERDAQSLMKERESVQDQSDPSETDSEELLQLDGKSISEWVSEIDAISKEVEAELVSRDIGCHLVQVLEAVNTVLFDLRGFKRTSITLDPENSYLHSVLNCRCSTAFLISVIYIEVCKRLNVPIVGSPVGEDFLIWPKTEYPEELFKATSGQSLFSIVNGRCVDDPGSMASDLTAKSLQDLDMATNRDIIGIALANLIRLHWRRASKSSHGLMLTSPLSQLNNISSSNFPLLRPQDLRLAIAAAERLLILQPHNWALRRDLGMMLYYDRQYGEAVQELSICMAFAPPEEEAVLEPFVERLHLLRLISSLKPLGSDRLTVP", "length": 340, "header": "tr|A0A1P8B8Y1-1|F4JSG8_ARATH Computationally mapped isoform of Transglutaminase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JSG8-1" }, "locus": { "chromosome": "4", "start_pos": 10477184, "end_pos": 10480212, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G19160.4", "url": "https://www.ensemblgenomes.org/id/AT4G19160.4" }, { "database": "Ensembl Peptide", "id": "AT4G19160.4", "url": "https://www.ensemblgenomes.org/id/AT4G19160.4" } ] } }, { "isoform_ac": "F4JSG7-1", "url": "https://www.uniprot.org/uniprotkb/F4JSG7/entry", "sequence": { "sequence": "MELAMVTMASSPVSRFVGFGHHTILRYDNDQRLRRGCSWTGIEKKIPFPRKKTASASAYPLFRSQHTKDSSRPKNYKEVTKSARQMFAREISIQSKDSEISIAKVLFYIAAEDEAFLAVNRERDAQSLMKERESVQDQSDPSETDSEELLQLDGKSISEWVSEIDAISKEVEAELVSRDIGCHLVQVLEAVNTVLFDLRGFKRTSITLDPENSYLHSVLNCRCSTAFLISVIYIEVCKRLNVPIVGSPVGEDFLIWPKTEYPEELFKATSGQSLFSIVNGRCVDDPGSMASDLTAKSLQDLDMATNRDIIGIALANLIRLHWRRASKSSHGLMLTSPLSQLNNISSSNFPLLRPQDLRLAIAAAERLLILQPHNWALRRDLGMMLYYDSRQYGEAVQELSICMAFAPPEEEAVLEPFVERLHLLRLISSLKPLGSDRLTVP", "length": 441, "header": "tr|F4JSG7-1|F4JSG7_ARATH Computationally mapped isoform of Transglutaminase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JSG8-1" }, "locus": { "chromosome": "4", "start_pos": 10477296, "end_pos": 10480139, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G19160.3", "url": "https://www.ensemblgenomes.org/id/AT4G19160.3" }, { "database": "Ensembl Peptide", "id": "AT4G19160.3", "url": "https://www.ensemblgenomes.org/id/AT4G19160.3" } ] } }, { "isoform_ac": "F4JSG8-1", "url": "https://www.uniprot.org/uniprotkb/F4JSG8/entry", "sequence": { "sequence": "MLCASSSLALLGPPSSAMVTMASSPVSRFVGFGHHTILRYDNDQRLRRGCSWTGIEKKIPFPRKKTASASAYPLFRSQHTKDSSRPKNYKEVTKSARQMFAREISIQSKDSEISIAKVLFYIAAEDEAFLAVNRERDAQSLMKERESVQDQSDPSETDSEELLQLDGKSISEWVSEIDAISKEVEAELVSRDIGCHLVQVLEAVNTVLFDLRGFKRTSITLDPENSYLHSVLNCRCSTAFLISVIYIEVCKRLNVPIVGSPVGEDFLIWPKTEYPEELFKATSGQSLFSIVNGRCVDDPGSMASDLTAKSLQDLDMATNRDIIGIALANLIRLHWRRASKSSHGLMLTSPLSQLNNISSSNFPLLRPQDLRLAIAAAERLLILQPHNWALRRDLGMMLYYDRQYGEAVQELSICMAFAPPEEEAVLEPFVERLHLLRLISSLKPLGSDRLTVP", "length": 453, "header": "tr|F4JSG8-1|F4JSG8_ARATH Isoform 1 of Transglutaminase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JSG8-1" }, "locus": { "chromosome": "4", "start_pos": 10477184, "end_pos": 10480212, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G19160.2", "url": "https://www.ensemblgenomes.org/id/AT4G19160.2" }, { "database": "Ensembl Peptide", "id": "AT4G19160.2", "url": "https://www.ensemblgenomes.org/id/AT4G19160.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8Y1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y1" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8Y1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G19160", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G19160", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JSG8", "url": "https://www.uniprot.org/uniprotkb/F4JSG8" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JSG8", "url": "https://www.uniprot.org/uniprotkb/F4JSG8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 356, "end_pos": 358, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JSG8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 453, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JSG8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JSG8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JSG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSG8" }, { "id": "PF13369", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13369" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein SirB1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 173, "end_pos": 325, "start_aa": "Trp", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 356, "end_pos": 358 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JUV3-1", "uniprot_ac": "F4JUV3", "uniprot_id": "F4JUV3_ARATH", "mass": { "chemical_mass": 54576.0, "monoisotopic_mass": 54576.0 }, "refseq": {}, "gene_names": [ { "name": "F9F13.4", "type": "synonym", "evidence": [ { "id": "F4JUV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JUV3" } ] }, { "name": "F9F13_4", "type": "synonym", "evidence": [ { "id": "F4JUV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JUV3" } ] } ], "protein_names": [ { "name": "Transcription factor TFIIE, alpha subunit", "type": "synonym", "evidence": [ { "id": "F4JUV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JUV3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JUV3", "url": "https://www.uniprot.org/uniprotkb/F4JUV3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JUV3", "locus": {} } ], "crossref": [ { "id": "AT4G20340", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G20340", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827782", "url": "https://www.ncbi.nlm.nih.gov/gene/827782", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039997", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039997", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G20340", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G20340", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NNYKVDD", "url": "https://omabrowser.org/oma/group/NNYKVDD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13097", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13097", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13097:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13097:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02002", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02002", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G20340", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G20340", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B8Y2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JUV3", "url": "https://www.uniprot.org/uniprotkb/F4JUV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JUV3-1", "url": "https://www.uniprot.org/uniprotkb/F4JUV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKSITVVRKTVVLEPFVKLVRLLVRIFYDNYTPESDNQQKSVKNVKGSAVIVLDALTRRQWVREEDLAKEVKRNAKELRKLIRHFEEQKFVMRYHRKETAKRAKMYSYAVGGTTDGRAEDNVKFHTHSYCCLDYAQIYDIVRYKLHRLKKKFKDELEDRNTVQEYGCPNCKRKYNALDALRLISMEDDSFHCENCNGELVMECNKLISEEVVDRGDNARRRQREKVKVWLQDLEGELKPLMELINRVKDLPFPAFEPFPAWEARAAKAARENGDFNPDDPSRSLGGYGSTPMPFLGETKVEVNLGEGNEDVTSTGGDSSLKMLPPWMIKQGMKLTEEQRGEMRQEANVDGEAAKLSDDKKSVMENGDDNKDLKDEYLKAYYAAIMEQQKLAAKLNEQESAGESTTTDIESATTYSDRQVGMKSKREEEEEDVEWEEGASVAANGNYKVDLNVEAEEAEEKEDGDEDDDIDWEEG", "length": 475, "header": "tr|F4JUV3-1|F4JUV3_ARATH Isoform 1 of Transcription factor TFIIE, alpha subunit OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JUV3-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B8Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y2/entry", "sequence": { "sequence": "MSARRQWVREEDLAKEVKRNAKELRKLIRHFEEQKFVMRYHRKETAKRAKMYSYAVGGTTDGRAEDNVKFHTHSYCCLDYAQIYDIVRYKLHRLKKKFKDELEDRNTVQEYGCPNCKRKYNALDALRLISMEDDSFHCENCNGELVMECNKLISEEVVDRGDNARRRQREKVKVWLQDLEGELKPLMELINRVKDLPFPAFEPFPAWEARAAKAARENGDFNPDDPSRSLGGYGSTPMPFLGETKVEVNLGEGNEDVTSTGGDSSLKMLPPWMIKQGMKLTEEQRGEMRQEANVDGEAAKLSDDKKSVMENGDDNKDLKDEYLKAYYAAIMEQQKLAAKLNEQESAGESTTTDIESATTYSDRQVGMKSKREEEEEDVEWEEGASVAANGNYKVDLNVEAEEAEEKEDGDEDDDIDWEEG", "length": 420, "header": "tr|A0A1P8B8Y2-1|F4JUV3_ARATH Computationally mapped isoform of Transcription factor TFIIE, alpha subunit OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JUV3-1" }, "locus": { "chromosome": "4", "start_pos": 10985392, "end_pos": 10987862, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G20340.3", "url": "https://www.ensemblgenomes.org/id/AT4G20340.3" }, { "database": "Ensembl Peptide", "id": "AT4G20340.3", "url": "https://www.ensemblgenomes.org/id/AT4G20340.3" } ] } }, { "isoform_ac": "F4JUV3-1", "url": "https://www.uniprot.org/uniprotkb/F4JUV3/entry", "sequence": { "sequence": "MDKSITVVRKTVVLEPFVKLVRLLVRIFYDNYTPESDNQQKSVKNVKGSAVIVLDALTRRQWVREEDLAKEVKRNAKELRKLIRHFEEQKFVMRYHRKETAKRAKMYSYAVGGTTDGRAEDNVKFHTHSYCCLDYAQIYDIVRYKLHRLKKKFKDELEDRNTVQEYGCPNCKRKYNALDALRLISMEDDSFHCENCNGELVMECNKLISEEVVDRGDNARRRQREKVKVWLQDLEGELKPLMELINRVKDLPFPAFEPFPAWEARAAKAARENGDFNPDDPSRSLGGYGSTPMPFLGETKVEVNLGEGNEDVTSTGGDSSLKMLPPWMIKQGMKLTEEQRGEMRQEANVDGEAAKLSDDKKSVMENGDDNKDLKDEYLKAYYAAIMEQQKLAAKLNEQESAGESTTTDIESATTYSDRQVGMKSKREEEEEDVEWEEGASVAANGNYKVDLNVEAEEAEEKEDGDEDDDIDWEEG", "length": 475, "header": "tr|F4JUV3-1|F4JUV3_ARATH Isoform 1 of Transcription factor TFIIE, alpha subunit OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JUV3-1" }, "locus": { "chromosome": "4", "start_pos": 10984618, "end_pos": 10988008, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G20340.1", "url": "https://www.ensemblgenomes.org/id/AT4G20340.1" }, { "database": "Ensembl Peptide", "id": "AT4G20340.1", "url": "https://www.ensemblgenomes.org/id/AT4G20340.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8Y2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y2" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8Y2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G20340", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G20340", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "transcription initiation at RNA polymerase II promoter", "id": "GO:0006367", "url": 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}, { "id": "F4JS86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JS86/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JS86", "url": "https://www.uniprot.org/uniprotkb/F4JS86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JS86", "locus": {} } ], "crossref": [ { "id": "F4JS86", "url": "https://alphafold.ebi.ac.uk/entry/F4JS86", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G13100", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G13100", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "826924", "url": "https://www.ncbi.nlm.nih.gov/gene/826924", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G13100", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G13100", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "THADHND", "url": "https://omabrowser.org/oma/group/THADHND/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46629", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46629", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13920", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13920", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_849372", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_849372", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G13100", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G13100", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B8Y8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A8MR29", "url": "https://www.uniprot.org/uniprotkb/A8MR29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A8MR29-1", "url": "https://www.uniprot.org/uniprotkb/A8MR29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JS86", "url": "https://www.uniprot.org/uniprotkb/F4JS86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JS86-1", "url": "https://www.uniprot.org/uniprotkb/F4JS86-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JS89", "url": "https://www.uniprot.org/uniprotkb/F4JS89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JS89-1", "url": "https://www.uniprot.org/uniprotkb/F4JS89-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JS90", "url": "https://www.uniprot.org/uniprotkb/F4JS90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JS90-1", "url": "https://www.uniprot.org/uniprotkb/F4JS90-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTMPFALEICSAAIELRILVQIEGKLSAKVENGRSSVTLEDILMAETSSFRSLTTPTTPVRNHSSSSLLDVMRRERRRDKTAWKSLRDKLRLKRTATGWISSNPIPTLDNHILTPDNDSHRFNRLGFLLTNSETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREPPRMSLMELLEDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF", "length": 265, "header": "tr|F4JS86-1|F4JS86_ARATH Isoform 1 of RING/U-box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JS86-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B8Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y8/entry", "sequence": { "sequence": "MIQMDGGDRLRVTLLDRMSTVENGRSSVTLEDILMAETSSFRSLTTPTTPVRNHSSSSLLDVMRRERRRDKTAWKSLRDKLRLKRTATGWISSNPIPTLDNHILTPDNDSHRFNRLGFLLTNSETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREEMQPPRMSLMELLEDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGLLQRIVRRHRELSSTTNRVIKLIDKNVRHRISSIRDTGDHN", "length": 261, "header": "tr|A0A1P8B8Y8-1|F4JS86_ARATH Computationally mapped isoform of RING/U-box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JS86-1" }, "locus": { "chromosome": "4", "start_pos": 7635765, "end_pos": 7638019, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G13100.6", "url": "https://www.ensemblgenomes.org/id/AT4G13100.6" }, { "database": "Ensembl Peptide", "id": "AT4G13100.6", "url": "https://www.ensemblgenomes.org/id/AT4G13100.6" } ] } }, { "isoform_ac": "A8MR29-1", "url": "https://www.uniprot.org/uniprotkb/A8MR29/entry", "sequence": { "sequence": "MIQMDGGDRLRVTLLDRMSTVENGRSSVTLEDILMAETSSFRSLTTPTTPVRNHSSSSLLDVMRRERRRDKTAWKSLRDKLRLKRTATGWISSNPIPTLDNHILTPDNDSHRFNRLGFLLTNSETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREPPRMSLMELLEDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF", "length": 256, "header": "tr|A8MR29-1|F4JS86_ARATH Computationally mapped isoform of RING/U-box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JS86-1" }, "locus": { "chromosome": "4", "start_pos": 7636438, "end_pos": 7637969, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G13100.3", "url": "https://www.ensemblgenomes.org/id/AT4G13100.3" }, { "database": "Ensembl Peptide", "id": "AT4G13100.3", "url": "https://www.ensemblgenomes.org/id/AT4G13100.3" } ] } }, { "isoform_ac": "F4JS86-1", "url": "https://www.uniprot.org/uniprotkb/F4JS86/entry", "sequence": { "sequence": "MTMPFALEICSAAIELRILVQIEGKLSAKVENGRSSVTLEDILMAETSSFRSLTTPTTPVRNHSSSSLLDVMRRERRRDKTAWKSLRDKLRLKRTATGWISSNPIPTLDNHILTPDNDSHRFNRLGFLLTNSETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREPPRMSLMELLEDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF", "length": 265, "header": "tr|F4JS86-1|F4JS86_ARATH Isoform 1 of RING/U-box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JS86-1" }, "locus": { "chromosome": "4", "start_pos": 7636438, "end_pos": 7639037, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G13100.2", "url": "https://www.ensemblgenomes.org/id/AT4G13100.2" }, { "database": "Ensembl Peptide", "id": "AT4G13100.2", "url": "https://www.ensemblgenomes.org/id/AT4G13100.2" } ] } }, { "isoform_ac": "F4JS89-1", "url": "https://www.uniprot.org/uniprotkb/F4JS89/entry", "sequence": { "sequence": "MIQMDGGDRLRVTLLDRMSTVENGRSSVTLEDILMAETSSFRSLTTPTTPVRNHSSSSLLDVMRRERRRDKTAWKSLRDKLRLKRTATGWISSNPIPTLDNHILTPDNDSHRFNRLGFLLTNSETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREEMQPPRMSLMELLEDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF", "length": 259, "header": "tr|F4JS89-1|F4JS89_ARATH Computationally mapped isoform of RING/U-box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JS86-1" }, "locus": { "chromosome": "4", "start_pos": 7636316, "end_pos": 7637969, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G13100.1", "url": "https://www.ensemblgenomes.org/id/AT4G13100.1" }, { "database": "Ensembl Peptide", "id": "AT4G13100.1", "url": "https://www.ensemblgenomes.org/id/AT4G13100.1" } ] } }, { "isoform_ac": "F4JS90-1", "url": "https://www.uniprot.org/uniprotkb/F4JS90/entry", "sequence": { "sequence": "MDGGDRLRVTLLDRMSTVENGRSSVTLEDILMAETSSFRSLTTPTTPVRNHSSSSLLDVMRRERRRDKTAWKSLRDKLRLKRTATGWISSNPIPTLDNHILTPDNDSHRFNRLGFLLTNSETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREEMQPPRMSLMELLEDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF", "length": 256, "header": "tr|F4JS90-1|F4JS90_ARATH Computationally mapped isoform of RING/U-box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JS86-1" }, "locus": { "chromosome": "4", "start_pos": 7636438, "end_pos": 7637943, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G13100.4", "url": "https://www.ensemblgenomes.org/id/AT4G13100.4" }, { "database": "Ensembl Peptide", "id": "AT4G13100.4", "url": "https://www.ensemblgenomes.org/id/AT4G13100.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8Y8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y8" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K804-1", "uniprot_ac": "F4K804", "uniprot_id": "F4K804_ARATH", "mass": { "chemical_mass": 51704.0, "monoisotopic_mass": 51704.0 }, "refseq": { "ac": "NP_001318449", "name": "GPI-anchored protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318449" }, "gene_names": [ { "name": "BPP3", "type": "recommended", "evidence": [ { "id": "F4K804", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K804" } ] }, { "name": "BASIC PROLINE-RICH PROTEIN3", "type": "synonym", "evidence": [ { "id": "NP_001318449", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318449" }, { "id": "F4K804", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K804" } ] }, { "name": "BPP3", "type": "synonym", "evidence": [ { "id": "NP_001318449", "database": "RefSeq", "url": 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"reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "BPP3", "url": "https://www.uniprot.org/uniprotkb/F4K804", "locus": {} } ], "crossref": [ { "id": "F4K804", "url": "https://alphafold.ebi.ac.uk/entry/F4K804", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G01280", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G01280", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "831711", "url": "https://www.ncbi.nlm.nih.gov/gene/831711", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G01280", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G01280", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VVERIIM", "url": "https://omabrowser.org/oma/group/VVERIIM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31949", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31949", "database": 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PE=1 SV=1 CANONICAL=F4K804-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B9S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9S1/entry", "sequence": { "sequence": "MSSQQYPVRRTAGENLLYSDGEKSDYEWLVTPPGSPSRNVTNHLNAPDDNLMTLISRLENYSKEESEHQTTSLHSSSSVSGIRRPSSSSSSRSTSRPPTPTRKSKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSSSSGTGTSRVTLTAARATRPTTSTDQQTTGSATSTRSNNRPMSAPNSKPGSRSSTPTRRPSTPNGSSTVLRSKPTKPLSKPALSLEASPIVRSRPWEPYEMPGFSVEAPSNLRTTLPDRPQTASSSRTRAFDASSSSRSASTERDVAKRQSCSPSRSRAPNGNVNGAVPSLRGQRAKTNNDDGRLISHAAKGNQKVEKVVNMRKLATPRLTESGSRRLGGGGGDSSAGKSSSGSGGFGFGRNLSKSSIDMALRHMVR", "length": 400, "header": "tr|A0A1P8B9S1-1|F4K804_ARATH Computationally mapped isoform of GPI-anchored protein OS=Arabidopsis thaliana OX=3702 GN=BPP3 PE=1 SV=1 CANONICAL=F4K804-1" }, "locus": { "chromosome": "5", "start_pos": 113921, "end_pos": 116306, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G01280.2", "url": "https://www.ensemblgenomes.org/id/AT5G01280.2" }, { "database": "Ensembl Peptide", "id": "AT5G01280.2", "url": "https://www.ensemblgenomes.org/id/AT5G01280.2" } ] } }, { "isoform_ac": "F4K804-1", "url": "https://www.uniprot.org/uniprotkb/F4K804/entry", "sequence": { "sequence": "MRRCEKRHRPTLLMESDNTSSTTAMSSQQYPVRRTAGENLLYSDGEKSDYEWLVTPPGSPSRNVTNHLNAPDDNLMTLISRLENYSKEESEHQTTSLHSSSSVSGIRRPSSSSSSRSTSRPPTPTRKSKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSSSSGTGTSRVTLTAARATRPTTSTDQQTTGSATSTRSNNRPMSAPNSKPGSRSSTPTRRPSTPNGSSTVLRSKPTKPLSKPALSLEASPIVRSRPWEPYEMPGFSVEAPSNLRTTLPDRPQTASSSRTRAFDASSSSRSASTERDVAKRQSCSPSRSRAPNGNVNGAVPSLRGQRAKTNNDDGRLISHAAKGNQKVEKVVNMRKLATPRLTESGSRRLGGGGGDSSAGKSSSGSGGFGFGRNLSKSSIDMALRHMDVRKGSMAGNFRHSVTKAPATSVYSVRSCRNRPVSSSRSSESSVNILCLDGSDDNLSDMSCS", "length": 484, "header": "tr|F4K804-1|F4K804_ARATH Isoform 1 of GPI-anchored protein OS=Arabidopsis thaliana OX=3702 GN=BPP3 PE=1 SV=1 CANONICAL=F4K804-1" }, "locus": { "chromosome": "5", "start_pos": 113999, "end_pos": 116411, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G01280.1", "url": "https://www.ensemblgenomes.org/id/AT5G01280.1" }, { "database": "Ensembl Peptide", "id": "AT5G01280.1", "url": "https://www.ensemblgenomes.org/id/AT5G01280.1" } ] } }, { "isoform_ac": "Q9LFA8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFA8/entry", "sequence": { "sequence": "MSSQQYPVRRTAGENLLYSDGEKSDYEWLVTPPGSPSRNVTNHLNAPDDNLMTLISRLENYSKEESEHQTTSLHSSSSVSGIRRPSSSSSSRSTSRPPTPTRKSKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSSSSGTGTSRVTLTAARATRPTTSTDQQTTGSATSTRSNNRPMSAPNSKPGSRSSTPTRRPSTPNGSSTVLRSKPTKPLSKPALSLEASPIVRSRPWEPYEMPGFSVEAPSNLRTTLPDRPQTASSSRTRAFDASSSSRSASTERDVAKRQSCSPSRSRAPNGNVNGAVPSLRGQRAKTNNDDGRLISHAAKGNQKVEKVVNMRKLATPRLTESGSRRLGGGGGDSSAGKSSSGSGGFGFGRNLSKSSIDMALRHMDVRKGSMAGNFRHSVTKAPATSVYSVRSCRNRPVSSSRSSESSVNILCLDGSDDNLSDMSCS", "length": 460, "header": "tr|Q9LFA8-1|Q9LFA8_ARATH Computationally mapped isoform of GPI-anchored protein OS=Arabidopsis thaliana OX=3702 GN=BPP3 PE=1 SV=1 CANONICAL=F4K804-1" }, "locus": { "chromosome": "5", "start_pos": 113921, "end_pos": 116306, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G01280.3", "url": "https://www.ensemblgenomes.org/id/AT5G01280.3" }, { "database": "Ensembl Peptide", "id": "AT5G01280.3", "url": "https://www.ensemblgenomes.org/id/AT5G01280.3" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 117, "end_pos": 117, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFA8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFA8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser117" }, { "start_pos": 123, "end_pos": 123, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFA8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFA8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr123" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B9S1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9S1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B9S1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9S1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G01280", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G01280", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cortical microtubule", "id": "GO:0055028", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055028", "evidence": [ { "database": "UniProtKB", "id": "F4K804", "url": "https://www.uniprot.org/uniprotkb/F4K804" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F4K804", "url": "https://www.uniprot.org/uniprotkb/F4K804" } ], "pmid": "" }, { "name": "microtubule associated complex", "id": "GO:0005875", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005875", "evidence": [ { "database": "UniProtKB", "id": "F4K804", "url": "https://www.uniprot.org/uniprotkb/F4K804" } ], "pmid": "" }, { "name": "plasmodesma", "id": "GO:0009506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009506", "evidence": [ { "database": "UniProtKB", "id": "F4K804", "url": "https://www.uniprot.org/uniprotkb/F4K804" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 409, "end_pos": 411, "annotation": "n_glycosylation_sequon" }, { "start_pos": 477, "end_pos": 479, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4K804-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 484, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4K804-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4K804" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 117, 123 ], "sequon_annotation_sites": [ { "start_pos": 18, "end_pos": 20 }, { "start_pos": 231, "end_pos": 233 }, { "start_pos": 409, "end_pos": 411 }, { "start_pos": 477, "end_pos": 479 }, { "start_pos": 63, "end_pos": 65 }, { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K2D7-1", "uniprot_ac": "F4K2D7", "uniprot_id": "F4K2D7_ARATH", "mass": { "chemical_mass": 101654.0, "monoisotopic_mass": 101654.0 }, "refseq": { "ac": "NP_001190239", "name": "LETM1-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190239" }, "gene_names": [ { "name": "MBL20.10", "type": "recommended", "evidence": [ { "id": "F4K2D7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K2D7" } ] }, { "name": "MBL20.10", "type": "synonym", "evidence": [ { "id": "NP_001190239", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190239" } ] }, { "name": "MBL20_10", "type": "synonym", "evidence": [ { "id": "NP_001190239", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190239" }, { "id": "F4K2D7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K2D7" } ] } ], "protein_names": [ { "name": "LETM1-like protein", "type": "synonym", "evidence": [ { "id": "NP_001190239", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190239" }, { "id": "F4K2D7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K2D7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K2D7", "url": "https://www.uniprot.org/uniprotkb/F4K2D7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MBL20.10", "url": "https://www.uniprot.org/uniprotkb/F4K2D7", "locus": {} } ], "crossref": [ { "id": "F4K2D7", "url": "https://alphafold.ebi.ac.uk/entry/F4K2D7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G06220", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G06220", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "830509", "url": "https://www.ncbi.nlm.nih.gov/gene/830509", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR044202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G06220", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G06220", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KSKWEGP", "url": "https://omabrowser.org/oma/group/KSKWEGP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14009", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14009", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14009:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14009:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001190239", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190239", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G06220", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G06220", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B9X6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9X6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9X6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9X6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K2D7", "url": "https://www.uniprot.org/uniprotkb/F4K2D7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K2D7-1", "url": "https://www.uniprot.org/uniprotkb/F4K2D7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K2D8", "url": "https://www.uniprot.org/uniprotkb/F4K2D8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K2D8-1", "url": "https://www.uniprot.org/uniprotkb/F4K2D8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVKFHRPGLVPSSCSNPWMSVGTLISCRRVLQLDYISNCCGNSRTQLFVTYDDKNYFLQRKLFGNKKMSSRRTTQPFLLASAEDGVAVNGSRASDDVQEMRAKLSGSLQDEYSCGELIQSLHDAARTFELALKEKISSSRLPWFSAAWLGVDRNAWVKTFSYQASVYCLLQAANEVSSRGNNRDDDLNVFVQRSLSRQAAPLDSMMRDKLSSSHPEANEWFWSGQVPSAVTSFVNCFEGDQRFVSATSVYVKSNSTAASNEIEVSLLMLVLNCIAAVTKLGPTKLSCPPFFSVIPDTTGRLMDKFVGFVPLPQTYHSMKTLGLRREFLLHFGPRAAACRVKSDCDTDEVVFWVDLIQNQLLRAIDREKIWSRLITSESIEVLDRDLAIFGFFIALGKSTQSFLAANGFSSLENPVEDLVRHFIGGSLLQYPQLSAISSYQLYVEVVCEELDWIPFYPARKDSQPAEQSHGHKSRPQGPPNYDALPQILNVCSYWLQSFIKYSKWPENPSNVKAAKFLSKGARKNWEYQGKLMKSDVFCRKKLRVSIFRTPYISIPMHFAFFLAVTEASFIDMTSSSTDGESSSFDKALESVDGALVRLESLLQQLHASSSSSGKEQIKAACSDLEKIRKLKKEAEFLEASFRAKAASLQEGGGDSDSQEYSEEQSQYLRGKDPKNSINSVDQGTRDSGFWGFFVRTPKGKPGPESLTDKYFEKSRENVDNVDSNPNEIYRFELLRNELIELEKRVQGSTDESGRTSEDLPKSSSSTKGVQLVQSSKKENVIEKTLDQLKDATTDVWQGTQLLAFDSAAAMELLRRSVVGDELTEKEKKALRRTMTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVPGLIPSTYGAERLNLLRQLEKVKQMQTNETEPEEGIDEPES", "length": 909, "header": "tr|F4K2D7-1|F4K2D7_ARATH Isoform 1 of LETM1-like protein 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OS=Arabidopsis thaliana OX=3702 GN=MBL20.10 PE=1 SV=1 CANONICAL=F4K2D7-1" }, "locus": { "chromosome": "5", "start_pos": 1879902, "end_pos": 1885643, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06220.2", "url": "https://www.ensemblgenomes.org/id/AT5G06220.2" }, { "database": "Ensembl Peptide", "id": "AT5G06220.2", "url": "https://www.ensemblgenomes.org/id/AT5G06220.2" } ] } }, { "isoform_ac": "F4K2D8-1", "url": "https://www.uniprot.org/uniprotkb/F4K2D8/entry", "sequence": { "sequence": "MAVKFHRPGLVPSSCSNPWMSVGTLISCRRVLQLDYISNCCGNSRTQLFVTYDDKNYFLQRKLFGNKKMSSRRTTQPFLLASAEDGVAVNGSRASDDVQEMRAKLSGSLQDEYSCGELIQSLHDAARTFELALKEKISSSRLPWFSAAWLGVDRNAWVKTFSYQASVYCLLQAANEVSSRGNNRDDDLNVFVQRSLSRQAAPLDSMMRDKLSSSHPEANEWFWSGQVPSAVTSFVNCFEGDQRFVSATSVYVKSNSTAASNEIEVSLLMLVLNCIAAVTKLGPTKLSCPPFFSVIPDTTGRLMDKFVGFVPLPQTYHSMKTLGLRREFLLHFGPRAAACRVKSDCDTDEVVFWVDLIQNQLLRAIDREKIWSRLITSESIEVLDRDLAIFGFFIALGKSTQSFLAANGFSSLENPVEDLVRHFIGGSLLQYPQLSAISSYQLYVESFIKYSKWPENPSNVKAAKFLSKGHNKLIQCQEELGISSLAVTEASFIDMTSSSTDGESSSFDKALESVDGALVRLESLLQQLHASSSSSGKEQIKAACSDLEKIRKLKKEAEFLEASFRAKAASLQEGGGDSDSQEYSEEQSQYLRGKDPKNSINSVDQGTSRDSGFWGFFVRTPKGKPGPESLTDKYFEKSRENVDNVDSNPNEIYRFELLRNELIELEKRVQGSTDESGRTSEDLPKSSSSTKGVQLVQSSKKENVIEKTLDQLKDATTDVWQGTQLLAFDSAAAMELLRRSVVGDELTEKEKKALRRTMTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVPGLIPSTYGAERLNLLRQLEKVKQMQTNETEPEEGIDEPES", "length": 832, "header": "tr|F4K2D8-1|F4K2D8_ARATH Computationally mapped isoform of LETM1-like protein OS=Arabidopsis thaliana OX=3702 GN=MBL20.10 PE=1 SV=1 CANONICAL=F4K2D7-1" }, "locus": { "chromosome": "5", "start_pos": 1879937, "end_pos": 1885643, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06220.1", "url": "https://www.ensemblgenomes.org/id/AT5G06220.1" }, { "database": "Ensembl Peptide", "id": "AT5G06220.1", "url": "https://www.ensemblgenomes.org/id/AT5G06220.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B9X6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9X6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B9X6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9X6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G06220", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G06220", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46309", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46309:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46309:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16135", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16135", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22970", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22970", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23209", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23209", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G36670", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G36670", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "AT5G36740", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G36740", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BA02", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BA02-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA02-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BFX4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BFX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFX4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BG27", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BG27-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BG30", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BG30-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG30-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4G6", "url": "https://www.uniprot.org/uniprotkb/F4K4G6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4G6-1", "url": "https://www.uniprot.org/uniprotkb/F4K4G6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4H9", "url": "https://www.uniprot.org/uniprotkb/F4K4H9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4H9-1", "url": "https://www.uniprot.org/uniprotkb/F4K4H9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLETNEQKGFDLNVCASIEDFSESDIKAEGETDSLVDGNVENVIEIKDKKKVIEREILITRRVLRSGSVARDLVNSDKHCKAVKRKGNVVSGGSSVDEVKEEVKQECVKSLVPEEIRGDDFRSEVKVESKDDRSDDGKEEKVQRKRGRPRKFGMSSQSDDNGLISNCKLRTSLGKKKELVGDDNVEKLVGGSCFNKEKAEVKLEHGEYAEDKEILGLDFRSQVKVEIKDDECGIVELHDEELQVKRKRGRPRKVQISSQSDESRPNTNCKLARTPELSSQSSVDRISLSRLRGRPPKTKETSVSLYIEKGPESNGRRMVRKRGRPPTPQKKRKSGMTDESDWKAKKRLKLCESPLESRHNNPLIDDERMIGEQRSKQTEAGGHSRSKSKKMLSDRILQLLLTAGWTVEYRPRNGRAYQDAVYLNPEGKTHWSVTKAYQVYKKQLESNPNDQKNSTTGSGFGLLPEEDLHLLERTIQKKRSDTGKQRSKLKDRDTNDILVSTKGTGKIKREEKHSRKRCTPSARSSLKDVDSKEDGYILFEGKRTMLGWMIDSTIVPLNGKVQCMDCKKTDILLEGIITKEGIRCNCCDEVFSVLDFEVHAGGNRNQPFKSLYLEGGNSLLQCLHESMNKQSESQLKGYHFVDFGSGDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKFCEKDEAAKHETSTLPSLSSCRLCEEKCSKHYPHTLADHQACINQDGTVPGERSTDSFCGKYCQELFEELQLFIGVKHPLPEGFSWSFLRRFELPSEVADCDISEKIAYNAKMAVAFSVMDECFSPLVDHRSGVNLLQNIVYNFGSNFHRLDFSSFLTAVLERGDEIIAVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLMDGIESFVAYFSQMFLAISEVLLDVWQFCCYPACFGDGPFCFFSGFGFAPVNDSEKKTIKNLNLLVFPGVDMLGKSLVKEKITDSVVSSPNGLVLLAPEMTLPVDVEENKPEESKDSAHERNCATAGVESPSNPVDSCLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTDIDINSLPDEVDDSHADQSDTKEQEIDDKEDKTPLSDDGCEGKAEGTKESNQQPDSNKVDNSQPLGNGGTGEELGNRTLALKREVTPTLRASPRLIQRSWRTSRVNQKFTGTTNAVLLDSPHRCV", "length": 1193, "header": "tr|F4K4G6-1|F4K4G6_ARATH Isoform 1 of RING/FYVE/PHD zinc finger superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K4G6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BA02-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA02/entry", "sequence": { "sequence": "MSSQSDDNGLISNCKLRTSLGKKKELVGDDNVEKLVGGSCFNKEKAEVKLEHGEYAEDKEILGLDFRSQVKVEIKDDECGIVELHDEELQVKRKRGRPRKVQISSQSDESRPNTNCKLARTPELSSQSSVDRISLSRLRGRPPKTKETSVSLYIEKGPESNGRRMVRKRGRPPTPQKKRKSGMTDESDWKAKKRLKLCESPLESRHNNPLIDDERMIGEQRSKQTEAGGHSRSKSKKMLSDRILQLLLTAGWTVEYRPRNGRAYQDAVYLNPEGKTHWSVTKAYQVYKKQLESNPNDQKNSTTGSGFGLLPEEDLHLLERTIQKKRSDTGKQRSKLKDRDTNDILVSTKGTGKIKREEKHSRKRCTPSARSSLKDVDSKEDGYILFEGKRTMLGWMIDSTIVPLNGKVQCMDCKKTDILLEGIITKEGIRCNCCDEVFSVLDFEVHAGGNRNQPFKSLYLEGGNSLLQCLHESMNKQSESQLKGYHFVDFGSGDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKFCEKDEAAKHETSTLPSLSSCRLCEEKCSKHYPHTLADHQACINQDGTVPGERSTDSFCGKYCQELFEELQLFIGVKHPLPEGFSWSFLRRFELPSEVADCDISEKIAYNAKMAVAFSVMDECFSPLVDHRSGVNLLQNIVYNFGSNFHRLDFSSFLTAVLERGDEIIAVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLMDGIESALGSLKVDKLVIPAVPELIDTWTSGFGFAPVNDSEKKTIKNLNLLVFPGVDMLGKSLVKEKITDSVVSSPNGLVLLAPEMTLPVDVEENKPEESKDSAHERNCATAGVESPSNPVDSCLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTDIDINSLPDEVDDSHADQSDTKEQEIDDKEDKTPLSDDGCEGKAEGTKESNQQPDSNKVDNSQPLGNGGTGEELGNRTLALKREVTPTLRASPRLIQRSWRTSRVNQKFTGTTNAVLLDSPHRCV", "length": 1026, "header": "tr|A0A1P8BA02-1|F4K4G6_ARATH Computationally mapped isoform of RING/FYVE/PHD zinc finger superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K4G6-1" }, "locus": { "chromosome": "5", "start_pos": 14460391, "end_pos": 14465760, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G36740.4", "url": "https://www.ensemblgenomes.org/id/AT5G36740.4" }, { "database": "Ensembl Peptide", "id": "AT5G36740.4", "url": "https://www.ensemblgenomes.org/id/AT5G36740.4" } ] } }, { "isoform_ac": "A0A1P8BFX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFX4/entry", "sequence": { "sequence": "MSSQSDDNGLISNCKLRTSLGKKKELVGDDNVEKLVGGSCFNKEKAEVKLEHGEYAEDKEILGLDFRSQVKVEIKDDECGIVELHDEELQVKRKRGRPRKVQISSQSDESRPNTNCKLARTPELSSQSSVDRISLSRLRGRPPKTKETSVSLYIEKGPESNGRRMVRKRGRPPTPQKKRKSGMTDESDWKAKKRLKLCESPLESRHNNPLIDDERMIGEQRSKQTEAGGHSRSKSKKMLSDRILQLLLTAGWTVEYRPRNGRAYQDAVYLNPEGKTHWSVTKAYQVYKKQLESNPNDQKNSTTGSGFGLLPEEDLHLLERTIQKKRSDTGKQRSKLKDRDTNDILVSTKGTGKIKREEKHSRKRCTPSARSSLKDVDSKEDGYILFEGKRTMLGWMIDSTIVPLNGKVQCMDCKKTDILLEGIITKEGIRCNCCDEVFSVLDFEVHAGGNRNQPFKSLYLEGGNSLLQCLHESMNKQSESQLKGYHFVDFGSGDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKFCEKDEAAKHETSTLPSLSSCRLCEEKCSKHYPHTLADHQACINQDGTVPGERSTDSFCGKYCQELFEELQLFIGVKHPLPEGFSWSFLRRFELPSEVADCDISEKIAYNAKMAVAFSVMDECFSPLVDHRSGVNLLQNIVYNFGSNFHRLDFSSFLTAVLERGDEIIAVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLMDGIESFVAYFSQMFLAISEVLLDVWQFCCYPACFGDGPFCFFSGFGFAPVNDSEKKTIKNLNLLVFPGVDMLGKSLVKEKITDSVVSSPNGLVLLAPEMTLPVDVEENKPEESKDSAHERNCATAGVESPSNPVDSCLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTDIDINSLPDEVDDSHADQSDTKEQEIDDKEDKTPLSDDGCEGKAEGTKESNQQPDSNKVDNSQPLGNGGTGEELGNRTLALKREVTPTLRASPRLIQRSWRTSRVNQKFTGTTNAVLLDSPHRCV", "length": 1040, "header": "tr|A0A1P8BFX4-1|F4K4G6_ARATH Computationally mapped isoform of RING/FYVE/PHD zinc finger superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K4G6-1" }, "locus": { "chromosome": "5", "start_pos": 14401092, "end_pos": 14406460, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G36670.3", "url": "https://www.ensemblgenomes.org/id/AT5G36670.3" }, { "database": "Ensembl Peptide", "id": "AT5G36670.3", "url": "https://www.ensemblgenomes.org/id/AT5G36670.3" } ] } }, { "isoform_ac": "A0A1P8BG27-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG27/entry", "sequence": { "sequence": "MLETNEQKGFDLNVCASIEDFSESDIKAEGETDSLVDGNVENVIEIKDKKKVIEREILITRRVLRSGSVARDLVNSDKHCKAVKRKGNVVSGGSSVDEVKEEVKQECVKSLVPEEIRGDDFRSEVKVESKDDRSDDGKEEKVQRKRGRPRKFGMSSQSDDNGLISNCKLRTSLGKKKELVGDDNVEKLVGGSCFNKEKAEVKLEHGEYAEDKEILGLDFRSQVKVEIKDDECGIVELHDEELQVKRKRGRPRKVQISSQSDESRPNTNCKLARTPELSSQSSVDRISLSRLRGRPPKTKETSVSLYIEKGPESNGRRMVRKRGRPPTPQKKRKSGMTDESDWKAKKRLKLCESPLESRHNNPLIDDERMIGEQRSKQTEAGGHSRSKSKKMLSDRILQLLLTAGWTVEYRPRNGRAYQDAVYLNPEGKTHWSVTKAYQVYKKQLESNPNDQKNSTTGSGFGLLPEEDLHLLERTIQKKRSDTGKQRSKLKDRDTNDILVSTKGTGKIKREEKHSRKRCTPSARSSLKDVDSKEDGYILFEGKRTMLGWMIDSTIVPLNGKVQCMDCKKTDILLEGIITKEGIRCNCCDEVFSVLDFEVHAGGNRNQPFKSLYLEGGNSLLQCLHESMNKQSESQLKGYHFVDFGSGDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKFCEKDEAAKHETSTLPSLSSCRLCEEKYHQACINQDGTVPGERSTDSFCGKYCQELFEELQLFIGVKHPLPEGFSWSFLRRFELPSEVADCDISEKIAYNAKMAVAFSVMDECFSPLVDHRSGVNLLQNIVYNFGSNFHRLDFSSFLTAVLERGDEIIAVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLMDGIESFVAYFSQMFLAISEVLLDVWQFCCYPACFGDGPFCFFSGFGFAPVNDSEKKTIKNLNLLVFPGVDMLGKSLVKEKITDSVVSSPNGLVLLAPEMTLPVDVEENKPEESKDSAHERNCATAGVESPSNPVDSCLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTDIDINSLPDEVDDSHADQSDTKEQEIDDKEDKTPLSDDGCEGKAEGTKESNQQPDSNKVDNSQPLGNGGTGEELGNRTLALKREVTPTLRASPRLIQRSWRTSRVNQKFTGTTNAVLLDSPHRCV", "length": 1183, "header": "tr|A0A1P8BG27-1|F4K4G6_ARATH Computationally mapped isoform of RING/FYVE/PHD zinc finger superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K4G6-1" }, "locus": { "chromosome": "5", "start_pos": 14401491, "end_pos": 14406442, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G36670.5", "url": "https://www.ensemblgenomes.org/id/AT5G36670.5" }, { "database": "Ensembl Peptide", "id": "AT5G36670.5", "url": "https://www.ensemblgenomes.org/id/AT5G36670.5" } ] } }, { "isoform_ac": "A0A1P8BG30-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG30/entry", "sequence": { "sequence": "MLETNEQKGFDLNVCASIEDFSESDIKAEGETDSLVDGNVENVIEIKDKKKVIEREILITRRVLRSGSVARDLVNSDKHCKAVKRKGNVVSGGSSVDEVKEEVKQECVKSLVPEEIRGDDFRSEVKVESKDDRSDDGKEEKVQRKRGRPRKFGMSSQSDDNGLISNCKLRTSLGKKKELVGDDNVEKLVGGSCFNKEKAEVKLEHGEYAEDKEILGLDFRSQVKVEIKDDECGIVELHDEELQVKRKRGRPRKVQISSQSDESRPNTNCKLARTPELSSQSSVDRISLSRLRGRPPKTKETSVSLYIEKGPESNGRRMVRKRGRPPTPQKKRKSGMTDESDWKAKKRLKLCESPLESRHNNPLIDDERMIGEQRSKQTEAGGHSRSKSKKMLSDRILQLLLTAGWTVEYRPRNGRAYQDAVYLNPEGKTHWSVTKAYQVYKKQLESNPNDQKNSTTGSGFGLLPEEDLHLLERTIQKKRSDTGKQRSKLKDRDTNDILVSTKGTGKIKREEKHSRKRCTPSARSSLKDVDSKEDGYILFEGKRTMLGWMIDSTIVPLNGKVQCMDCKKTDILLEGIITKEGIRCNCCDEVFSVLDFEVHAGGNRNQPFKSLYLEGGNSLLQCLHESMNKQSESQLKGYHFVDFGSGDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKFCEKDEAAKHETSTLPSLSSCRLCEEKYHQACINQDGTVPGERSTDSFCGKYCQELFEELQLFIGVKHPLPEGFSWSFLRRFELPSEVADCDISEKIAYNAKMAVAFSVMDECFSPLVDHRSGVNLLQNIVYNFGSNFHRLDFSSFLTAVLERGDEIIAVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLMDGIESVGPPPLLVIS", "length": 902, "header": "tr|A0A1P8BG30-1|F4K4G6_ARATH Computationally mapped isoform of RING/FYVE/PHD zinc finger superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K4G6-1" }, "locus": { "chromosome": "5", "start_pos": 14460335, "end_pos": 14466043, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G36740.3", "url": "https://www.ensemblgenomes.org/id/AT5G36740.3" }, { "database": "Ensembl Peptide", "id": "AT5G36740.3", "url": "https://www.ensemblgenomes.org/id/AT5G36740.3" } ] } }, { "isoform_ac": "F4K4G6-1", "url": "https://www.uniprot.org/uniprotkb/F4K4G6/entry", "sequence": { "sequence": "MLETNEQKGFDLNVCASIEDFSESDIKAEGETDSLVDGNVENVIEIKDKKKVIEREILITRRVLRSGSVARDLVNSDKHCKAVKRKGNVVSGGSSVDEVKEEVKQECVKSLVPEEIRGDDFRSEVKVESKDDRSDDGKEEKVQRKRGRPRKFGMSSQSDDNGLISNCKLRTSLGKKKELVGDDNVEKLVGGSCFNKEKAEVKLEHGEYAEDKEILGLDFRSQVKVEIKDDECGIVELHDEELQVKRKRGRPRKVQISSQSDESRPNTNCKLARTPELSSQSSVDRISLSRLRGRPPKTKETSVSLYIEKGPESNGRRMVRKRGRPPTPQKKRKSGMTDESDWKAKKRLKLCESPLESRHNNPLIDDERMIGEQRSKQTEAGGHSRSKSKKMLSDRILQLLLTAGWTVEYRPRNGRAYQDAVYLNPEGKTHWSVTKAYQVYKKQLESNPNDQKNSTTGSGFGLLPEEDLHLLERTIQKKRSDTGKQRSKLKDRDTNDILVSTKGTGKIKREEKHSRKRCTPSARSSLKDVDSKEDGYILFEGKRTMLGWMIDSTIVPLNGKVQCMDCKKTDILLEGIITKEGIRCNCCDEVFSVLDFEVHAGGNRNQPFKSLYLEGGNSLLQCLHESMNKQSESQLKGYHFVDFGSGDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKFCEKDEAAKHETSTLPSLSSCRLCEEKCSKHYPHTLADHQACINQDGTVPGERSTDSFCGKYCQELFEELQLFIGVKHPLPEGFSWSFLRRFELPSEVADCDISEKIAYNAKMAVAFSVMDECFSPLVDHRSGVNLLQNIVYNFGSNFHRLDFSSFLTAVLERGDEIIAVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLMDGIESFVAYFSQMFLAISEVLLDVWQFCCYPACFGDGPFCFFSGFGFAPVNDSEKKTIKNLNLLVFPGVDMLGKSLVKEKITDSVVSSPNGLVLLAPEMTLPVDVEENKPEESKDSAHERNCATAGVESPSNPVDSCLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTDIDINSLPDEVDDSHADQSDTKEQEIDDKEDKTPLSDDGCEGKAEGTKESNQQPDSNKVDNSQPLGNGGTGEELGNRTLALKREVTPTLRASPRLIQRSWRTSRVNQKFTGTTNAVLLDSPHRCV", "length": 1193, "header": "tr|F4K4G6-1|F4K4G6_ARATH Isoform 1 of RING/FYVE/PHD zinc finger superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K4G6-1" }, "locus": { "chromosome": "5", "start_pos": 14401491, "end_pos": 14406730, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G36670.1", "url": "https://www.ensemblgenomes.org/id/AT5G36670.1" }, { "database": "Ensembl Peptide", "id": "AT5G36670.1", "url": "https://www.ensemblgenomes.org/id/AT5G36670.1" } ] } }, { "isoform_ac": "F4K4H9-1", "url": "https://www.uniprot.org/uniprotkb/F4K4H9/entry", "sequence": { "sequence": "MLETNEQKGFDLNVCASIEDFSESDIKAEGETDSLVDGNVENVIEIKDKKKVIEREILITRRVLRSGSVARDLVNSDKHCKAVKRKGNVVSGGSSVDEVKEEVKQECVKSLVPEEIRGDDFRSEVKVESKDDRSDDGKEEKVQRKRGRPRKFGMSSQSDDNGLISNCKLRTSLGKKKELVGDDNVEKLVGGSCFNKEKAEVKLEHGEYAEDKEILGLDFRSQVKVEIKDDECGIVELHDEELQVKRKRGRPRKVQISSQSDESRPNTNCKLARTPELSSQSSVDRISLSRLRGRPPKTKETSVSLYIEKGPESNGRRMVRKRGRPPTPQKKRKSGMTDESDWKAKKRLKLCESPLESRHNNPLIDDERMIGEQRSKQTEAGGHSRSKSKKMLSDRILQLLLTAGWTVEYRPRNGRAYQDAVYLNPEGKTHWSVTKAYQVYKKQLESNPNDQKNSTTGSGFGLLPEEDLHLLERTIQKKRSDTGKQRSKLKDRDTNDILVSTKGTGKIKREEKHSRKRCTPSARSSLKDVDSKEDGYILFEGKRTMLGWMIDSTIVPLNGKVQCMDCKKTDILLEGIITKEGIRCNCCDEVFSVLDFEVHAGGNRNQPFKSLYLEGGNSLLQCLHESMNKQSESQLKGYHFVDFGSGDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKFCEKDEAAKHETSTLPSLSSCRLCEEKYHQACINQDGTVPGERSTDSFCGKYCQELFEELQLFIGVKHPLPEGFSWSFLRRFELPSEVADCDISEKIAYNAKMAVAFSVMDECFSPLVDHRSGVNLLQNIVYNFGSNFHRLDFSSFLTAVLERGDEIIAVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLMDGIESALGSLKVDKLVIPAVPELIDTWTSGFGFAPVNDSEKKTIKNLNLLVFPGVDMLGKSLVKEKITDSVVSSPNGLVLLAPEMTLPVDVEENKPEESKDSAHERNCATAGVESPSNPVDSCLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTDIDINSLPDEVDDSHADQSDTKEQEIDDKEDKTPLSDDGCEGKAEGTKESNQQPDSNKVDNSQPLGNGGTGEELGNRTLALKREVTPTLRASPRLIQRSWRTSRVNQKFTGTTNAVLLDSPHRCV", "length": 1169, "header": "tr|F4K4H9-1|F4K4H9_ARATH Computationally mapped isoform of Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein OS=Arabidopsis thaliana OX=3702 GN=MPK17.2 PE=1 SV=2 CANONICAL=F4K4G6-1" }, "locus": { "chromosome": "5", "start_pos": 14460329, "end_pos": 14466040, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G36740.1", "url": "https://www.ensemblgenomes.org/id/AT5G36740.1" }, { "database": "Ensembl Peptide", "id": "AT5G36740.1", "url": "https://www.ensemblgenomes.org/id/AT5G36740.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BA02", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA02" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BG27", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG27" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BA02", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA02" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G36670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G36670", "resource": "KEGG Pathway" }, { "id": "ath:AT5G36740", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G36740", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F4K4G6", "url": "https://www.uniprot.org/uniprotkb/F4K4G6" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F4K4G6", "url": "https://www.uniprot.org/uniprotkb/F4K4G6" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "F4K4G6", "url": 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"MNSSDFPNDSRENRRINTDGEAIDALFMATEEAVTRDFLSGFQNQDVEMEERKSTEADVVKTGSDYWRDYEVKRNFKAAKHFALELHSDLKIVEKTEEEVEEEVIRDEDKSEFRKAKESIKKRRQEISTTSDMEIDLNVRRKAPSLVELSARVLAQNFLAIKSLKLVPDHLRKKLSYLVSGLGEFDTRLMELLIEDSPSEICAKNCVQLVEDDLVKIFCDCDRVSLKVLILDLCGRSMTDYTINQFFKRAPNGFPSLTTLSLQGAFCLTDNALLLISKSSPLLQYINLTECSLLTYRALRILADKFGSTLRGLSIGGCQGIKKHKGFSSSLYKFEKLNYLSVAGLVSVNDGVVRSFFMFRSSILTDLSLANCNEVTDECMWHIGRYCKKLEALDITDLDKLTDKSLEFITEGCRYLKSLKLTSNRFSDECIAAFLEVSGGSLRELCLNKVRDVGPETAFSLAKVCKMLQFLDLSWCRRLKEDDLRRILRCCSSLQSLKLFGWTQVEDTYLEELSRSDVHITGLKLTSLYAHLDNFYPSVGAKFF", "length": 544, "header": "tr|Q9C597-1|Q9C597_ARATH Isoform 1 of RNI-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN=RAD7C PE=4 SV=1 CANONICAL=Q9C597-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BA90-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA90/entry", "sequence": { "sequence": 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"https://www.ensemblgenomes.org/id/AT5G21900.1" }, { "database": "Ensembl Peptide", "id": "AT5G21900.1", "url": "https://www.ensemblgenomes.org/id/AT5G21900.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 96, "end_pos": 96, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C597", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C597" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr96" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, 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M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BA90", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA90" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9C597", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C597" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K518-1", "uniprot_ac": "F4K518", "uniprot_id": "F4K518_ARATH", "mass": { "chemical_mass": 147170.0, "monoisotopic_mass": 147170.0 }, "refseq": {}, "gene_names": [ { "name": "K22G18.3", "type": "synonym", "evidence": [ { "id": "F4K518", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K518" } ] }, { "name": "K22G18_3", "type": "synonym", "evidence": [ { "id": "F4K518", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K518" } ] } ], "protein_names": [ { "name": "DCD (Development and Cell Death) domain protein", "type": "synonym", "evidence": [ { "id": "F4K518", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K518/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K518", "url": "https://www.uniprot.org/uniprotkb/F4K518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4K518", "locus": {} } ], "crossref": [ { "id": "F4K518", "url": "https://alphafold.ebi.ac.uk/entry/F4K518", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G61910", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G61910", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd01459", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01459", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04047", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04047", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04048", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04048", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "836312", "url": "https://www.ncbi.nlm.nih.gov/gene/836312", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037768", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037768", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G61910", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G61910", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR10857", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10857", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10857:SF106", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10857:SF106", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46444", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46444", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46444:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46444:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46444:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46444:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07002", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07002", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10539", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10539", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G61910", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G61910", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BB74", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BB74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BB74-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BB74-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K518", "url": "https://www.uniprot.org/uniprotkb/F4K518", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K518-1", "url": "https://www.uniprot.org/uniprotkb/F4K518-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K521", "url": "https://www.uniprot.org/uniprotkb/F4K521", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K521-1", "url": "https://www.uniprot.org/uniprotkb/F4K521-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METEMDFSDGEQTNGNSHVTASQYFAPPGYNRSLVAAYGNGNTTIGLEKGIERRLDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGVYEATVGGRLDIEPEAFEGKYPAQVGFRIVMNCLPLTENTFKSAIYENYKGSKFKQELSPHQVMSLLSLFRSFTSPELDLLPHRLASRASAPRTLSFEERFIAATHLRNASSVLDPLSARHVEPRLGSVMAHQPVPRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPTEARQLRLLGDPSRSDSPRSEPPRSSIQDPQLKYLTILSNIRRYGSASDRLASENEYHPATPSEKDQFAVPYSDNKNYPSTLSGSEHPSASAANGSVYRSEFYNSASQKEGEASQQHEIPAGTYHHPEASTVSNTTKSMQPDMQAVSVAQSHTETAGYPTPAHGEASQPPAGAIGYTHQPQSVAGNYSTHSQPGNVEESTQSYAGTDSYSQQQYYAAMGPTTQLHAGGYIQKPHEIGYSQQPHDAATGYSQQPHDAATGYSQQPHDAATGYSQQPHAASTGYSQQTYAAATGYTQQPHAAAAGYTQQPHAAATGYSQQPHAAATAHAQQPYAAATAHAQQLHAVATGYALQLHAAATGYAQQPHAAATGYALQPHAQAVEYTMQPHAQAVGYMPQYHAHAVEIGMQCISLITLRQQMQPQRIIKHLKTLKQSVATLDLRNLCVMGAEAWTRTGALSGKEGQGHKTRVSSSVYCTFESAVFFVGKSKIMGNCCSDVASGAGATAGVGGSGSSAALGATNDALDYYLKSKGFNGLFSQIELSFSASNLRDRDVLSKSDPMVVVYQKEKDATLSEVFRSEVVLNSLAPKWIKKFIVAYHFETVQTLVFRVYDVDTKFQNSREEMLKLDEQQFLGEATCALSEIITKSTRTSTLELKRKDGFAPQAQPHHGKLIIHAEESLASKISTEIVFRCSNLESKDLFSKSDPFLVVSKIVEHGTPIPVSKTEVRKNDLNPIWKPVFLSVQQVGSKDSPVIIECSDFNSNGKHSLIGKVQKSLSDLEKLHLAGQGINFSLPTGAGQNKVLKSQLFVDKFTETVHHTFLEYLASGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRLNAYQRAIMDVGEVLQFYDSDKRFPAWGFGARPIDAPVSHCFNLNGSSSYSEVDGIQGIMTSYTSALFNVSLAGPTLFGPVINAAAMIASASLAQGSRKYYVLLIITDGVITDLQETKDALVSASDLPLSILIVGVGGADFKEMEILDADKGERLESSSGRLASRDIVQFVALRDVQYGEISVVQALLAELPSQFLTYMRIRNMKPIPP", "length": 1346, "header": "tr|F4K518-1|F4K518_ARATH Isoform 1 of DCD (Development and Cell Death) domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K518-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BB74-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BB74/entry", "sequence": { "sequence": "METEMDFSDGEQTNGNSHVTASQYFAPPGYNRSLVAAYGNGNTTIGLEKGIERRLDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGVYEATVGGRLDIEPEAFEGKYPAQVGFRIVMNCLPLTENTFKSAIYENYKGSKFKQELSPHQVMSLLSLFRSFTSPELDLLPHRLASRASAPRTLSFEERFIAATHLRNASSVLDPLSARHVEPRLGSVMAHQPVPRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPTEARQLRLLGDPSRSDSPRSEPPRSSIQDPQLKYLTILSNIRRYGSASDRLASENEYHPATPSEKDQFAVPYSDNKNYPSTLSGSEHPSASAANGSVYRSEFYNSASQKEGEASQQHEIPAGTYHHPEASTVSNTTKSMQPDMQAVSVAQSHTETAGYPTPAHGEASQPPAGAIGYTHQPQSVAAMGPTTQLHAGGYIQKPHEIGYSQQPHDAATGYSQQPHDAATGYSQQPHDAATGYSQQPHAASTGYSQQTYAAATGYTQQPHAAAAGYTQQPHAAATGYSQQPHAAATAHAQQPYAAATAHAQQLHAVATGYALQLHAAATGYAQQPHAAATGYALQPHAQAVEYTMQPHAQAVGYMPQYHAHAVVYSQQGVTQGSVPRAPGTTDCNAANQAYSATGDWNAVHQSYYPQTADATTTYYQTS", "length": 706, "header": "tr|A0A1P8BB74-1|F4K518_ARATH Computationally mapped isoform of DCD (Development and Cell Death) domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K518-1" }, "locus": { "chromosome": "5", "start_pos": 24859818, "end_pos": 24864148, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G61910.5", "url": "https://www.ensemblgenomes.org/id/AT5G61910.5" }, { "database": "Ensembl Peptide", "id": "AT5G61910.5", "url": "https://www.ensemblgenomes.org/id/AT5G61910.5" } ] } }, { "isoform_ac": "F4K518-1", "url": "https://www.uniprot.org/uniprotkb/F4K518/entry", "sequence": { "sequence": "METEMDFSDGEQTNGNSHVTASQYFAPPGYNRSLVAAYGNGNTTIGLEKGIERRLDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGVYEATVGGRLDIEPEAFEGKYPAQVGFRIVMNCLPLTENTFKSAIYENYKGSKFKQELSPHQVMSLLSLFRSFTSPELDLLPHRLASRASAPRTLSFEERFIAATHLRNASSVLDPLSARHVEPRLGSVMAHQPVPRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPTEARQLRLLGDPSRSDSPRSEPPRSSIQDPQLKYLTILSNIRRYGSASDRLASENEYHPATPSEKDQFAVPYSDNKNYPSTLSGSEHPSASAANGSVYRSEFYNSASQKEGEASQQHEIPAGTYHHPEASTVSNTTKSMQPDMQAVSVAQSHTETAGYPTPAHGEASQPPAGAIGYTHQPQSVAGNYSTHSQPGNVEESTQSYAGTDSYSQQQYYAAMGPTTQLHAGGYIQKPHEIGYSQQPHDAATGYSQQPHDAATGYSQQPHDAATGYSQQPHAASTGYSQQTYAAATGYTQQPHAAAAGYTQQPHAAATGYSQQPHAAATAHAQQPYAAATAHAQQLHAVATGYALQLHAAATGYAQQPHAAATGYALQPHAQAVEYTMQPHAQAVGYMPQYHAHAVEIGMQCISLITLRQQMQPQRIIKHLKTLKQSVATLDLRNLCVMGAEAWTRTGALSGKEGQGHKTRVSSSVYCTFESAVFFVGKSKIMGNCCSDVASGAGATAGVGGSGSSAALGATNDALDYYLKSKGFNGLFSQIELSFSASNLRDRDVLSKSDPMVVVYQKEKDATLSEVFRSEVVLNSLAPKWIKKFIVAYHFETVQTLVFRVYDVDTKFQNSREEMLKLDEQQFLGEATCALSEIITKSTRTSTLELKRKDGFAPQAQPHHGKLIIHAEESLASKISTEIVFRCSNLESKDLFSKSDPFLVVSKIVEHGTPIPVSKTEVRKNDLNPIWKPVFLSVQQVGSKDSPVIIECSDFNSNGKHSLIGKVQKSLSDLEKLHLAGQGINFSLPTGAGQNKVLKSQLFVDKFTETVHHTFLEYLASGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRLNAYQRAIMDVGEVLQFYDSDKRFPAWGFGARPIDAPVSHCFNLNGSSSYSEVDGIQGIMTSYTSALFNVSLAGPTLFGPVINAAAMIASASLAQGSRKYYVLLIITDGVITDLQETKDALVSASDLPLSILIVGVGGADFKEMEILDADKGERLESSSGRLASRDIVQFVALRDVQYGEISVVQALLAELPSQFLTYMRIRNMKPIPP", "length": 1346, "header": "tr|F4K518-1|F4K518_ARATH Isoform 1 of DCD (Development and Cell Death) domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K518-1" }, "locus": { "chromosome": "5", "start_pos": 24855621, "end_pos": 24864172, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G61910.4", "url": "https://www.ensemblgenomes.org/id/AT5G61910.4" }, { "database": "Ensembl Peptide", "id": "AT5G61910.4", "url": "https://www.ensemblgenomes.org/id/AT5G61910.4" } ] } }, { "isoform_ac": "F4K521-1", "url": "https://www.uniprot.org/uniprotkb/F4K521/entry", "sequence": { "sequence": "MAEAMETEMDFSDGEQTNGNSHVTASQYFAPPGYNRSLVAAYGNGNTTIGLEKGIERRLDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGVYEATVGGRLDIEPEAFEGKYPAQVGFRIVMNCLPLTENTFKSAIYENYKGSKFKQELSPHQVMSLLSLFRSFTSPELDLLPHRLASRASAPRTLSFEERFIAATHLRNASSVLDPLSARHVEPRLGSVMAHQPVPRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPTEARQLRLLGDPSRSDSPRSEPPRSSIQDPQLKYLTILSNIRRYGSASDRLASENEYHPATPSEKDQFAVPYSDNKNYPSTLSGSEHPSASAANGSVYRSEFYNSASQKEGEASQQHEIPAGTYHHPEASTVSNTTKSMQPDMQAVSVAQSHTETAGYPTPAHGEASQPPAGAIGYTHQPQSVAGNYSTHSQPGNVEESTQSYAGTDSYSQQQYYAAMGPTTQLHAGGYIQKPHEIGYSQQPHDAATGYSQQPHDAATGYSQQPHDAATGYSQQPHAASTGYSQQTYAAATGYTQQPHAAAAGYTQQPHAAATGYSQQPHAAATAHAQQPYAAATAHAQQLHAVATGYALQLHAAATGYAQQPHAAATGYALQPHAQAVEYTMQPHAQAVGYMPQYHAHAVVYSQQGVTQGSVPRAPGTTDCNAANQAYSATGDWNAVHQSYYPQTADATTTYYQTS", "length": 742, "header": "tr|F4K521-1|F4K521_ARATH Computationally mapped isoform of DCD (Development and Cell Death) domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K518-1" }, "locus": { "chromosome": "5", "start_pos": 24859878, "end_pos": 24864156, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G61910.3", "url": "https://www.ensemblgenomes.org/id/AT5G61910.3" }, { "database": "Ensembl Peptide", "id": "AT5G61910.3", "url": "https://www.ensemblgenomes.org/id/AT5G61910.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 342, "start_aa": "Thr", "end_pos": 342, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr342", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 441, "start_aa": "Thr", "end_pos": 441, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr441", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BB74", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BB74" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BB74", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BB74" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G61910", "name": "", "url": 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SV=1 CANONICAL=F4JZV9-1" }, "locus": { "chromosome": "5", "start_pos": 13742072, "end_pos": 13748318, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G35560.2", "url": "https://www.ensemblgenomes.org/id/AT5G35560.2" }, { "database": "Ensembl Peptide", "id": "AT5G35560.2", "url": "https://www.ensemblgenomes.org/id/AT5G35560.2" } ] } }, { "isoform_ac": "F4JZV9-1", "url": "https://www.uniprot.org/uniprotkb/F4JZV9/entry", "sequence": { "sequence": "MAKNEEGSSSPSWGASFFMQTSEDVAMAFAAAASAINPPRPSVVFSSKDEGSDSPLERLQRQVSKAVKNFYETPKTKSVLYNPEVLTSQKRQWAKFQDHKPLKDPSRLFESVVVVGLHPNCDIQALERQYIARKSEGSSGRLRSALVSQNHSRVEPSLEPQVLLVYPPDKQPPIKYKDLHSFCFPGGIEVHAVERTPSMSELSEIILSQEHLRPSDLSFVFRLQVADNSTLYGCCLLVEEIVNKPSRLLSTVLDKQPACSSLSRYVMTTRRCYCVLTRLPFFELHFGVLNSIFLEERLEHLMSGISCASLEPPTDFSNEDSLNDSSPQQRDSGDTKEQTVEAGSKLPKADEISDNGTCEANQKADDSAESIDRVTKADDSLPIIKQGRESCLPEPGPLLRCPYLDEISDSSTSFQAAPCERRHSRTSADDTETDEASFSGQDDTSSNFDILEWAKSKKNGSLQILCEYYQLKCPARGSTITFHPLEHLHPVEYHRPNEVALHTPGSAIDLRSCSTSLELAEAHTTLMAEEEAAALSTWAVASLCGSLRLDNVLMILAGALLEKQIVFVCSNLGILAASVLSIIPVIRPFRWQSLLMPVLPDDMLEFLDAPVPYIVGVKNKTSEVQSKLTNVIVVDILKNQVKSPSMPQLPQYRDLYNALSPYHSKLVGESYLAKKRPVYECTDVQVDAAKGFMDVLRSYLDSLCSNLQSHTITNVQSNNDKVSLLLKESFIDSFPSRQRPFMKLFVDTQLFSVHTDLVLSFIQKL", "length": 765, "header": "tr|F4JZV9-1|F4JZV9_ARATH Isoform 1 of DENN (AEX-3) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MOK9.21 PE=1 SV=1 CANONICAL=F4JZV9-1" }, "locus": { "chromosome": "5", "start_pos": 13742072, 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"A0A1P8BB75", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BB75" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BB75", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BB75" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G35560", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G35560", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": 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"title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BBC7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBC7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BBC7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBC7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G59960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G59960", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JXE8", "url": "https://www.uniprot.org/uniprotkb/F4JXE8" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JXE8", "url": "https://www.uniprot.org/uniprotkb/F4JXE8" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F4JXE8", "url": "https://www.uniprot.org/uniprotkb/F4JXE8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JXE8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 359, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JXE8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JXE8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], 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"name": "MUD21.5", "url": "https://www.uniprot.org/uniprotkb/F4K250", "locus": {} } ], "crossref": [ { "id": "F4K250", "url": "https://alphafold.ebi.ac.uk/entry/F4K250", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G66810", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G66810", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "836814", "url": "https://www.ncbi.nlm.nih.gov/gene/836814", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050618", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050618", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G66810", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G66810", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LIHEYCI", "url": "https://omabrowser.org/oma/group/LIHEYCI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12864", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12864", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10607", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10607", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_201482", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_201482", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G66810", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G66810", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BBP4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BBP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BBP5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BBP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BBR1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BBR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K250", "url": "https://www.uniprot.org/uniprotkb/F4K250", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K250-1", "url": "https://www.uniprot.org/uniprotkb/F4K250-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRGIYYVDLDFLTCSPHETKFTHTRQSDRRSHPQSKIAGRFSSPTKEEPRKRKATMDSTPVNWEALDALIIDFVSSENLVEDAAAAVNSPPSPLSSPSSSSSPSISSSSYHSRLIIRRIRSSIESGDIETAIDILRSHAPFVLDDHRILFRLQKQKFIELLRKGTHEAAIDCLRTCVAPCALDAYPEAYEEFKHVLLALIYDKDDQTSPVANEWAEKRRYEMAGLMSSVLRASLQAYDPVFSMTLRYLISIHKGFCFHQGISSAVSDLTHRLLLEERDAPATPIESMYEVPPFDEVDIQALAHAVELTRQGAVDSMKFAKGDLFQAFQNELCRMRLDVSVLDELVKEYCIYRGIVDSEMQMITIPAKRNQSEVGRSLSRDCSSEIDLNTSQHSDIENYSNKSMLDGSLTYDTEMSCEEGGDVGTRYGSEPTSVCEDCSTSWSNQCENTRALLRIRSHMNSEGNKRKRWCGRTAEMDCLPRISFANSESGTNPIEDKYEIALALKELVSRGMAAEAFSEISTMDPDFFTQNPGLLFHLKQVEFLKLVSAGDHNGALKVACFHLGPLAANDQSLLKTLKETLLVLLQPDGTAPGKDLPLNDLANTLQVSVGNRLGIEEPKLMKIIKATLHTHTEWFKLQMCKDRFNNLLKIDSLKEVNTDLIGAIKSKSKKDSNTNLSSQVTTTSSSTMTSEDGGSSSLMMMTQTLPREALWEESAILKVMEFLAMPRSDAIQLLSQYNGDAEAVIQQLFG", "length": 750, "header": "tr|F4K250-1|F4K250_ARATH Isoform 1 of Ran-binding protein in the microtubule-organising centre protein OS=Arabidopsis thaliana OX=3702 GN=MUD21.5 PE=1 SV=1 CANONICAL=F4K250-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BBP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBP4/entry", "sequence": { "sequence": "MAGLMSSVLRASLQAYDPVFSMTLRYLISIHKGFCFHQGISSAVSDLTHRLLLEERDAPATPIESMYEVPPFDEVDIQALAHAVELTRQGAVDSMKFAKGDLFQAFQNELCRMRLDVSVLDELVKEYCIYRGIVDSEMQMITIPAKRNQSEVGRSLSRDCSSEIDLNTSQHSDIENYSNKSMLDGSLTYDTEMSCEEGGDVGTRYGSEPTSVCEDCSTSWSNQCENTRALLRIRSHMNSEGNKRKRWCGRTAEMDCLPRISFANSESGTNPIEDKYEIALALKELVSRGMAAEAFSEISTMDPDFFTQNPGLLFHLKQVEFLKLVSAGDHNGALKVACFHLGPLAANDQSLLKTLKETLLVLLQPDGTAPGKDLPLNDLANTLQVSVGNRLGIEEPKLMKIIKATLHTHTEWFKLQMCKDRFNNLLKIDSLKEVNTDLIGAIKSKSKKDSNTNLSSQVTTTSSSTMTSEDGGSSSLMMMTQTLPREALWEESAILKVMEFLAMPRSDAIQLLSQYNGDAEAVIQQLFG", "length": 528, "header": "tr|A0A1P8BBP4-1|F4K250_ARATH Computationally mapped isoform of Ran-binding protein in the microtubule-organising centre protein OS=Arabidopsis thaliana OX=3702 GN=MUD21.5 PE=1 SV=1 CANONICAL=F4K250-1" }, "locus": { "chromosome": "5", "start_pos": 26673991, "end_pos": 26676618, "strand": "+", "evidence": [ { "database": "Ensembl 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mapped isoform of Ran-binding protein in the microtubule-organising centre protein OS=Arabidopsis thaliana OX=3702 GN=MUD21.5 PE=1 SV=1 CANONICAL=F4K250-1" }, "locus": { "chromosome": "5", "start_pos": 26672873, "end_pos": 26676672, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G66810.2", "url": "https://www.ensemblgenomes.org/id/AT5G66810.2" }, { "database": "Ensembl Peptide", "id": "AT5G66810.2", "url": "https://www.ensemblgenomes.org/id/AT5G66810.2" } ] } }, { "isoform_ac": "A0A1P8BBR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBR1/entry", "sequence": { "sequence": "MPRGIYYVDLDFLTCSPHETKFTHTRQSDRRSHPQSKIAGRFSSPTKEEPRKRKATMDSTPVNWEALDALIIDFVSSENLVEDAAAAVNSPPSPLSSPSSSSSPSISSSSYHSRLIIRRIRSSIESGDIETAIDILRSHAPFVLDDHRILFRLQKQKFIELLRKGTHEAAIDCLRTCVAPCALDAYPEAYEEFKHVLLALIYDKDDQTSPVANEWAEKRRYEMAGLMSSVLRASLQAYDPVFSMTLRYLISIHKGFCFHQGISSAVSDLTHRLLLEERDAPATPIESMYEVPPFDEVDIQALAHAVELTRQGAVDSMKFAKGDLFQAFQNELCRMRLDVSVLDELVKEYCIYRGIVDSEMQMITIPAKRNQSEVGRSLSRDCSSEIDLNTSQHSDIENYSNKSMLDGSLTYDTEMSCEEGGDVGTRYGSEPTSVCEDCSTSWSNQCENTRALLRIRSHMNSEGNKRKRWCGRTAEMDCLPRISFANSESGTNPIEDKYEIALALKELVSRGMAAEAFSEISTMDPDFFTQNPGLLFHLKQVEFLKLVSAGDHNGALKVACFHLGPLAANDQSLLKTLKETLLVLLQPDGTAPGKDLPLNDLANTLQVTMFLVLISSSGFVSDERWNTQLVFVFAILF", "length": 637, "header": "tr|A0A1P8BBR1-1|F4K250_ARATH Computationally mapped isoform of Ran-binding protein in the microtubule-organising centre protein OS=Arabidopsis thaliana OX=3702 GN=MUD21.5 PE=1 SV=1 CANONICAL=F4K250-1" }, "locus": { "chromosome": "5", "start_pos": 26672878, "end_pos": 26676616, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G66810.3", "url": "https://www.ensemblgenomes.org/id/AT5G66810.3" }, { "database": "Ensembl Peptide", "id": "AT5G66810.3", "url": "https://www.ensemblgenomes.org/id/AT5G66810.3" } ] } }, { "isoform_ac": "F4K250-1", "url": "https://www.uniprot.org/uniprotkb/F4K250/entry", "sequence": { "sequence": "MPRGIYYVDLDFLTCSPHETKFTHTRQSDRRSHPQSKIAGRFSSPTKEEPRKRKATMDSTPVNWEALDALIIDFVSSENLVEDAAAAVNSPPSPLSSPSSSSSPSISSSSYHSRLIIRRIRSSIESGDIETAIDILRSHAPFVLDDHRILFRLQKQKFIELLRKGTHEAAIDCLRTCVAPCALDAYPEAYEEFKHVLLALIYDKDDQTSPVANEWAEKRRYEMAGLMSSVLRASLQAYDPVFSMTLRYLISIHKGFCFHQGISSAVSDLTHRLLLEERDAPATPIESMYEVPPFDEVDIQALAHAVELTRQGAVDSMKFAKGDLFQAFQNELCRMRLDVSVLDELVKEYCIYRGIVDSEMQMITIPAKRNQSEVGRSLSRDCSSEIDLNTSQHSDIENYSNKSMLDGSLTYDTEMSCEEGGDVGTRYGSEPTSVCEDCSTSWSNQCENTRALLRIRSHMNSEGNKRKRWCGRTAEMDCLPRISFANSESGTNPIEDKYEIALALKELVSRGMAAEAFSEISTMDPDFFTQNPGLLFHLKQVEFLKLVSAGDHNGALKVACFHLGPLAANDQSLLKTLKETLLVLLQPDGTAPGKDLPLNDLANTLQVSVGNRLGIEEPKLMKIIKATLHTHTEWFKLQMCKDRFNNLLKIDSLKEVNTDLIGAIKSKSKKDSNTNLSSQVTTTSSSTMTSEDGGSSSLMMMTQTLPREALWEESAILKVMEFLAMPRSDAIQLLSQYNGDAEAVIQQLFG", "length": 750, "header": "tr|F4K250-1|F4K250_ARATH Isoform 1 of Ran-binding protein in the microtubule-organising centre protein OS=Arabidopsis thaliana OX=3702 GN=MUD21.5 PE=1 SV=1 CANONICAL=F4K250-1" }, "locus": { "chromosome": "5", "start_pos": 26672873, "end_pos": 26676672, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G66810.1", "url": "https://www.ensemblgenomes.org/id/AT5G66810.1" }, { "database": "Ensembl Peptide", "id": "AT5G66810.1", "url": "https://www.ensemblgenomes.org/id/AT5G66810.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, 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R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BC49", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BC49" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027988", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027988", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058923", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058923", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G19420", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G19420", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HPRGIPM", "url": "https://omabrowser.org/oma/group/HPRGIPM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8BC78", "url": "https://www.orthodb.org/?gene=A0A1P8BC78", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4K148", "url": "https://www.orthodb.org/?gene=F4K148", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4K149", "url": "https://www.orthodb.org/?gene=F4K149", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22870", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22870", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22870:SF437", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22870:SF437", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01363", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01363", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08381", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08381", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13713", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13713", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16457", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16457", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16627", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16627", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25390", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25390", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_197443", "url": 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"https://www.uniprot.org/uniprotkb/F4K149-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRNGRMTPSDLSRAGPVTRDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYDERSLDLICKDKDEAEVWFSGLKALISRCHQRKWRTESRSDGTPSEANSPRTYTRRSSPLHSPFSSNESFQKEGSNHLRLHSPYESPPKNGVDKAFSDMSLYAVPPKGFFPPGSATMSVHSLSSGGSDTLHGHMKGMGMDAFRVSLSSAISSSSHGSGHDDGDTLGDVFMWGEGIGEGVLGGGNHRVGSSLEIKMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDALNTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGDKEPKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPHADGKVPTRVDGKLHKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDADDRNSPTLVESLKDKQVKSIACGSNFTAAVCLHKWASGMDQSMCSGCRQPFNFKRKRHNCYNCGLVFCHSCSNKKSLKACMAPNPNKPYRVCDRCFNKLKKAMETDPSSHSSLSRRESVNQGSDAIDRDEKLDTRSDGQLARFSLLEPMRQVDSRSKKNKKYEFNSSRVSPIPSGGSHRGSLNITKSFNPTFGSSKKFFSASVPGSRIASRATSPISRRPSPPRSTTPTPTLSGLTTPKIVVDDTKRSNDNLSQEVVMLRSQVENLTRKAQLQEVELERTTKQLKEALAIASEESARCKAAKEVIKSLTAQLKDMAERLPVGSARTVKSPSLNSFGSSPDYAAPSSNTLNRPNSRETDSDSLTTVPMFSNGTSTPVFDSGSYRQQANHAAEAINRISTRSKESEPRNENEWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEKQAEEWWAENRGRVYEQYNVRIVVDKSSVGVGSEDLGH", "length": 1105, "header": "tr|F4K149-1|F4K149_ARATH Isoform 1 of Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K149-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BC78-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BC78/entry", "sequence": { "sequence": 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Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K149-1" }, "locus": { "chromosome": "5", "start_pos": 6547638, "end_pos": 6553251, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G19420.3", "url": "https://www.ensemblgenomes.org/id/AT5G19420.3" }, { "database": "Ensembl Peptide", "id": "AT5G19420.3", "url": "https://www.ensemblgenomes.org/id/AT5G19420.3" } ] } }, { "isoform_ac": "F4K148-1", "url": "https://www.uniprot.org/uniprotkb/F4K148/entry", "sequence": { "sequence": 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"MSRNGRMTPSDLSRAGPVTRDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYDERSLDLICKDKDEAEVWFSGLKALISRCHQRKWRTESRSDGTPSEANSPRTYTRRSSPLHSPFSSNESFQKEGSNHLRLHSPYESPPKNGVDKAFSDMSLYAVPPKGFFPPGSATMSVHSLSSGGSDTLHGHMKGMGMDAFRVSLSSAISSSSHGSGHDDGDTLGDVFMWGEGIGEGVLGGGNHRVGSSLEIKMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDALNTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGDKEPKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPHADGKVPTRVDGKLHKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDADDRNSPTLVESLKDKQVKSIACGSNFTAAVCLHKWASGMDQSMCSGCRQPFNFKRKRHNCYNCGLVFCHSCSNKKSLKACMAPNPNKPYRVCDRCFNKLKKAMETDPSSHSSLSRRESVNQGSDAIDRDEKLDTRSDGQLARFSLLEPMRQVDSRSKKNKKYEFNSSRVSPIPSGGSHRGSLNITKSFNPTFGSSKKFFSASVPGSRIASRATSPISRRPSPPRSTTPTPTLSGLTTPKIVVDDTKRSNDNLSQEVVMLRSQVENLTRKAQLQEVELERTTKQLKEALAIASEESARCKAAKEVIKSLTAQLKDMAERLPVGSARTVKSPSLNSFGSSPDYAAPSSNTLNRPNSRETDSDSLTTVPMFSNGTSTPVFDSGSYRQQANHAAEAINRISTRSKESEPRNENEWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEKQAEEWWAENRGRVYEQYNVRIVVDKSSVGVGSEDLGH", "length": 1105, "header": "tr|F4K149-1|F4K149_ARATH Isoform 1 of Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K149-1" }, "locus": { "chromosome": "5", "start_pos": 6547625, "end_pos": 6553283, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G19420.1", "url": "https://www.ensemblgenomes.org/id/AT5G19420.1" }, { "database": "Ensembl Peptide", "id": "AT5G19420.1", "url": "https://www.ensemblgenomes.org/id/AT5G19420.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 146, "start_aa": "Thr", "end_pos": 146, "end_aa": "Thr", "residue": "Thr", "site_lbl": 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Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BCG1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCG1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BCG1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCG1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G42770", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G42770", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q54TC5-1", "protein_name": "7-methyl-GTP pyrophosphatase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": 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"https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G11080", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "830975", "url": "https://www.ncbi.nlm.nih.gov/gene/830975", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G11080", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G11080", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TMNSETH", "url": "https://omabrowser.org/oma/group/TMNSETH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15204", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15204", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15204:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15204:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G11080", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G11080", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BCL0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BCL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCL0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JWE4", "url": "https://www.uniprot.org/uniprotkb/F4JWE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JWE4-1", "url": 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"https://www.uniprot.org/uniprotkb/A0A1P8BCL0/entry", "sequence": { "sequence": "MGDTHDFTDLIRIKIKILHSTTHTLSVERTIPVRDLKQDICYYCGVSPERQPRLLFRGRVLKNDQRLSDYHVEEGHTLYLVKGSPPIPLFSSNAAANSNLGRGTLTDHSYQLTARGYDTPSVVIPDSITTLSRHLDRIRQVFATYGNNDDNNWQAPNRSREDLIARECHWGELAHTTRRLLIGEVAECLSNISMLLVDQVNVTDPSARRLRQERVVESGSLLCHLGSSILALGHGTSRISMGETQDDVGRAVFISPTGQNRLQSHHSWLQTSIRAGRRIRIISRRRSSRNQQHSDLYFNASDQNADNTSSPRLTTDEELSDSDSEHEMSE", "length": 330, "header": "tr|A0A1P8BCL0-1|F4JWE4_ARATH Computationally mapped isoform of Ubiquitin-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JWE4-1" }, "locus": { "chromosome": "5", "start_pos": 3517275, "end_pos": 3519449, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G11080.3", "url": "https://www.ensemblgenomes.org/id/AT5G11080.3" }, { "database": "Ensembl Peptide", "id": "AT5G11080.3", "url": "https://www.ensemblgenomes.org/id/AT5G11080.3" } ] } }, { "isoform_ac": "F4JWE4-1", "url": 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"glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BCL0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCL0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BCL0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCL0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G11080", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G11080", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JWE4", "url": "https://www.uniprot.org/uniprotkb/F4JWE4" } ], "pmid": "" }, { "name": "BAT3 complex", "id": "GO:0071818", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071818", "evidence": [ { "database": "UniProtKB", "id": "F4JWE4", "url": "https://www.uniprot.org/uniprotkb/F4JWE4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "polyubiquitin modification-dependent protein binding", "id": "GO:0031593", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031593", "evidence": [ { "database": "UniProtKB", "id": "F4JWE4", "url": "https://www.uniprot.org/uniprotkb/F4JWE4" } ], "pmid": "" }, { "name": "misfolded protein binding", "id": "GO:0051787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051787", "evidence": [ { "database": "UniProtKB", "id": "F4JWE4", "url": "https://www.uniprot.org/uniprotkb/F4JWE4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "F4JWE4", "url": "https://www.uniprot.org/uniprotkb/F4JWE4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" }, { "start_pos": 222, "end_pos": 224, "annotation": "n_glycosylation_sequon" }, { "start_pos": 320, "end_pos": 322, "annotation": "n_glycosylation_sequon" }, { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JWE4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 373, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JWE4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JWE4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JWE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JWE4" }, { "id": "PS50053", 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"common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JXV3", "locus": {} } ], "crossref": [ { "id": "AT5G11430", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G11430", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd21538", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21538", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "831014", "url": "https://www.ncbi.nlm.nih.gov/gene/831014", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003618", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003618", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G11430", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G11430", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VHGVELY", "url": "https://omabrowser.org/oma/group/VHGVELY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11477", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11477", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11477:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11477:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07500", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07500", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07744", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07744", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G11430", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G11430", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A178UDY8", "url": "https://www.uniprot.org/uniprotkb/A0A178UDY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A178UDY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A178UDY8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BCP5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BCP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JXV3", "url": "https://www.uniprot.org/uniprotkb/F4JXV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JXV3-1", "url": "https://www.uniprot.org/uniprotkb/F4JXV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEMAEINGSMQLVGKHKSLPQTTLGGGSASEAPNKQVRPWLQQLSPASNGILHIPTKILSQETLHSLMHGKKATQTESAPQKPAKPVVNKKQHVPPPQRSVKAMEEVNESVRSKMRESLASALALVKKDDDSPKGKENIGTVETPVITQENTQSFQPASPASISVPVGEGTMSEMPTSVESSVQKDSEIPVDIMMEDVIKFNVLKSQYDEVFPRDNVPFTDIIFPNDDLLHGNELSWDLEVSDLGETKDYGTGGEKSFQDPKLLASKIEMELYKLFGGVNKKYRERGRSLLFNLKDKNNPELRERVMSEEISAERLCSMTAEELASKELSQWRQAKAEEMAKMVVLQDTDIDVRSLVRKTHKGEFQVEIEPVDRGTVDVSGGIMSRSKRRPRAKSHSVKTALKDEAAKADNEKSRSTPPSTEEIDPMQGLGIDDELKDVEFLPPIVSLDEFMESLDSEPPFESPHGNSEMQVSPSEKSDSEAGSDSKSPKGSPKELSDKSLPEAKPEKIDEVTPEFDANVKVDDDISRVEKAAALSDDKGERAWDGILQLSMSSVVPVAGIFKSGEKAETSEWPAMVEVKGRVRLSGFGKFIQELPKSRTRALMVMYLAYKDGISESQRGSLIEVIDSYVADQRVGYAEPASGVELYLCPTRGETLDLLNKVISQEQLDEVKSLDIGLVGVVVWRRAVVPKPGSGSKRQHSFSSSIGSKTSVLPVNKKQRVHVTEKPLVVASMRNHHHGYVKHDTAADDDVPPGFGPVASRDEDDLPEFNFNSSVVPVSSPQPLPAQSKSLDQVRKLIHKYGKSASTYDDDDDEDDIPEWQPHVPSHQLPPPPPPPLGFRPEVFRPPQDGWYDNQNGGSGQHYERNQSRNRGF", "length": 873, "header": "tr|F4JXV3-1|F4JXV3_ARATH Isoform 1 of SPOC domain / Transcription elongation factor S-II protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JXV3-1" }, "isoforms": [ { "isoform_ac": "A0A178UDY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A178UDY8/entry", "sequence": { "sequence": "MEMAEINGSMQLVGKHKSLPQTTLGGGSASEAPNKQVRPWLQQLSPASNGILHIPTKILSQETLHSLMHGKKATQTESAPQKPAKPVVNKKQHVPPPQRSVKAMEEVNESVRSKMRESLASALALVKKDDDSPKGKENIGTVETPVITQENTQSFQPASPASISVPVGEGTMSEMPTSVESSVQKDSEIPVDIMMEDVIKFNVLKSQYDEVFPRDNVPFTDIIFPNDDLLHGNELSWDLEVSDLGETKDYGTGGEKSFQDPKLLASKIEMELYKLFGGVNKKYRERGRSLLFNLKDKNNPELRERVMSEEISAERLCSMTAEELASKELSQWRQAKAEEMAKMVVLQDTDIDVRSLVRKTHKGEFQVEIEPVDRGTVDVSGGIMSRSKRRPRAKSHSVKTALKDEAAKADNEKSRSTPPSTEEIDPMQGLGIDDELKDVEFLPPIVSLDEFMESLDSEPPFESPHGNSEMQVSPSEKSDSEAGSDSKSPKGSPKELSDKSLPEAKPEKIDEVTPEFDANVKVDDDISRVEKAAALSDDKGERAWDGILQLSMSSVVPVAGIFKSGEKAETSEWPAMVEVKGRVRLSGFGKFIQELPKSRTRALMKAKRLQLNTSHVCVTRMGIRFMQSINYIDLGQILY", "length": 639, "header": "tr|A0A178UDY8-1|F4JXV3_ARATH Computationally mapped isoform of SPOC domain / Transcription elongation factor S-II protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JXV3-1" }, "locus": { "chromosome": "5", "start_pos": 3647917, "end_pos": 3651220, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G11430.5", "url": "https://www.ensemblgenomes.org/id/AT5G11430.5" }, { "database": "Ensembl Peptide", "id": "AT5G11430.5", "url": "https://www.ensemblgenomes.org/id/AT5G11430.5" } ] } }, { "isoform_ac": "A0A1P8BCP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCP5/entry", "sequence": { "sequence": "MEMAEINGSMQLVGKHKSLPQTTLGGGSASEAPNKQVRPWLQQLSPASNGILHIPTKILSQETLHSLMHGKKATQTESAPQKPAKPVVNKKQHVPPPQRSVKAMEEVNESVRSKMRESLASALALVKKDDDSPKGKENIGTVETPVITQENTQSFQPASPASISVPVGEGTMSEMPTSVESSVQKDSEIPVDIMMEDVIKFNVLKSQYDEVFPRDNVPFTDIIFPNDDLLHGNELSWDLEVSDLGETKDYGTGGEKSFQDPKLLASKIEMELYKLFGGVNKKYRERGRSLLFNLKDKNNPELRERVMSEEISAERLCSMTAEELASKELSQWRQAKAEEMAKMVVLQDTDIDVRSLVRKTHKGEFQVEIEPVDRGTVDVSGGIMSRSKRRPRAKSHSVKTALKDEAAKADNEKSRSTPPSTEEIDPMQGLGIDDELKDVEFLPPIVSLDEFMESLDSEPPFESPHGNSEMQVSPSEKSDSEAGSDSKSPKGSPKELSDKSLPEAKPEKIDEVTPEFDANVKVDDDISRVEKAAALSDDKGERAWDGILQLSMSSVVPVAGIFKSGEKAETSEWPAMVEVKGRVRLSGFGKFIQELPKSRTRALMVYKAFFCYHCTSITLSNLLLHTTVEITLLLLLYIIFNRLTLSHLKTLLSSLHGNQKAKRLQLNTSHVCVTRMGIRFMQSINYIDLGQILY", "length": 694, "header": "tr|A0A1P8BCP5-1|F4JXV3_ARATH Computationally mapped isoform of SPOC domain / Transcription elongation factor S-II protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JXV3-1" }, "locus": { "chromosome": "5", "start_pos": 3647920, "end_pos": 3652427, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G11430.6", "url": "https://www.ensemblgenomes.org/id/AT5G11430.6" }, { "database": "Ensembl Peptide", "id": "AT5G11430.6", "url": "https://www.ensemblgenomes.org/id/AT5G11430.6" } ] } }, { "isoform_ac": "F4JXV3-1", "url": "https://www.uniprot.org/uniprotkb/F4JXV3/entry", "sequence": { "sequence": "MEMAEINGSMQLVGKHKSLPQTTLGGGSASEAPNKQVRPWLQQLSPASNGILHIPTKILSQETLHSLMHGKKATQTESAPQKPAKPVVNKKQHVPPPQRSVKAMEEVNESVRSKMRESLASALALVKKDDDSPKGKENIGTVETPVITQENTQSFQPASPASISVPVGEGTMSEMPTSVESSVQKDSEIPVDIMMEDVIKFNVLKSQYDEVFPRDNVPFTDIIFPNDDLLHGNELSWDLEVSDLGETKDYGTGGEKSFQDPKLLASKIEMELYKLFGGVNKKYRERGRSLLFNLKDKNNPELRERVMSEEISAERLCSMTAEELASKELSQWRQAKAEEMAKMVVLQDTDIDVRSLVRKTHKGEFQVEIEPVDRGTVDVSGGIMSRSKRRPRAKSHSVKTALKDEAAKADNEKSRSTPPSTEEIDPMQGLGIDDELKDVEFLPPIVSLDEFMESLDSEPPFESPHGNSEMQVSPSEKSDSEAGSDSKSPKGSPKELSDKSLPEAKPEKIDEVTPEFDANVKVDDDISRVEKAAALSDDKGERAWDGILQLSMSSVVPVAGIFKSGEKAETSEWPAMVEVKGRVRLSGFGKFIQELPKSRTRALMVMYLAYKDGISESQRGSLIEVIDSYVADQRVGYAEPASGVELYLCPTRGETLDLLNKVISQEQLDEVKSLDIGLVGVVVWRRAVVPKPGSGSKRQHSFSSSIGSKTSVLPVNKKQRVHVTEKPLVVASMRNHHHGYVKHDTAADDDVPPGFGPVASRDEDDLPEFNFNSSVVPVSSPQPLPAQSKSLDQVRKLIHKYGKSASTYDDDDDEDDIPEWQPHVPSHQLPPPPPPPLGFRPEVFRPPQDGWYDNQNGGSGQHYERNQSRNRGF", "length": 873, "header": "tr|F4JXV3-1|F4JXV3_ARATH Isoform 1 of SPOC domain / Transcription elongation factor S-II protein 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"end_pos": 467, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4K4J2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4K4J2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4K4J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K4J2" }, { "id": "PF01764", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01764" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fungal lipase-type", "eco_id": "ECO_0000259", "start_pos": 201, "end_pos": 362, "start_aa": "Ile", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"Protein Classification" ] }, { "id": "830324", "url": "https://www.ncbi.nlm.nih.gov/gene/830324", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G04460", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G04460", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GRNWQEN", "url": "https://omabrowser.org/oma/group/GRNWQEN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46519", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46519", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46519:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46519:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13920", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13920", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_196066", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196066", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G04460", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G04460", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BD10", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BD10-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD10-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JWA1", "url": "https://www.uniprot.org/uniprotkb/F4JWA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JWA1-1", "url": "https://www.uniprot.org/uniprotkb/F4JWA1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JWA3", "url": "https://www.uniprot.org/uniprotkb/F4JWA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JWA3-1", "url": "https://www.uniprot.org/uniprotkb/F4JWA3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSIQPLLQKSESRDDVRAEFERGLEEFMRGHLDECISFGSCSSVHNPEDEDNEDDQLVRRRRRSELEGDNLAESSAARRRQSQILSRWAARQAQEMITTIERRNRESELIALAGLQTVSMLDSSFLRESQSQSPSSRRQGAASERPNTQASGILQMWRELEDEHVLNRARERVRERLRQQRSVESNTNLSSSIASESQLSENNGSLRDSSESENDFGSWSHDRNEHGDNNNTSSREQSPDLGDGERERVRHIARGWMDSRINDHSSNVRQRDDNRRPEWLGDTERERVRIIREWMQMTSQQRGGARATPREDQRSTSEADRNHDAAPQVDRVRVGLAVNHEEGQPPHVRRDLRRVRGRQALLDLLMRAERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPSMASRELLQLRERQTVSGLREGFHNGRENIVHENTSNTDNDNSNTSTNALAIAITAGNSQRVTDESSTSSRQGNDSPILPDNSESNLANADRDWEEDTNQRRIWQENVPVDERPNLEQTTLTQFDGYDNTDINRDETSVSDMHREASGFADDEYRTQEAHGVWHENSSRQSDGNWPGTRSEALRSRRVVQLRRLNRFHPPEDDNVYSMELRELLSRRSVSNLLHSGFRESLDQLIQSYAERRGHTHVDWDLHANLQTAIPDSPERDTDHQVFVRNDNQLNGINGSQLLPTPPAPPPQPIWHQDLHHTSWSRHSMHRSEIEWEVMNDLRGDVARLQQGMSQMQRMLEACMDMQLELQRSVRQEVSAALNRSAGDQGMSAETSEDGSRWSHVSKGTCCVCCDNHIDALLYRCGHMCTCSKCANELVRNGGKCPLCRAPIIEVIRAYSIL", "length": 863, "header": "tr|F4JWA1-1|F4JWA1_ARATH Isoform 1 of RING/U-box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JWA1-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BD10-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD10/entry", "sequence": { "sequence": "MTSIQPLLQKSESRDDVRAEFERGLEEFMRGHLDECISFGSCSSVHNPEDEDNEDDQLVRRRRRSELEGDNLAESSAARRRQSQILSRWAARQAQEMITTIERRNRESELIALAGLQTVSMLDSSFLRESQSQSPSSRRQGAASERPNTQASGILQMWRELEDEHVLNRARERVRERLRQQRSVESNTNLSSSIASESQLSENNGSLRDSSESENDFGSWSHDRNEHGDNNNTSSREQSPDLGDGERERVRHIARGWMDSRINDHSSNVRQRDDNRRPEWLGDTERERVRIIREWMQMTSQQRGGARATPREDQRSTSEADRNHDAAPQVDRVRVGLAVNHEEGQPPHVRRDLRRVRGRQALLDLLMRAERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPSMASRELLQLRERQTVSGLREGFHNGRENIVHENTSNTDNDNSNTSTNALAIAITAGNSQRVTDESSTSSRQGNDSPILPDNSESNLANADRDWEEDTNQRRIWQENVPVDERPNLEQTTLTQFDGYDNTDINRDETSVSDMHREASGFADDEYRTQEAHGVWHENSSRQSDGNWPGTRSEALRSRRVVQLRRLNRFHPPEDDNVYSMELRELLSRRSVSNLLHSGFRESLDQLIQSYAERRGHTHVDWDLHANLQTAIPDSPERDTDHQVFVRNDNQLNGINGSQLLPTPPAPPPQPIWHQDLHHTSWSRHSMHRSEIVILPLRVLASSP", "length": 747, "header": "tr|A0A1P8BD10-1|F4JWA1_ARATH Computationally mapped isoform of RING/U-box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JWA1-1" }, "locus": { "chromosome": "5", "start_pos": 1259526, "end_pos": 1263964, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G04460.5", "url": "https://www.ensemblgenomes.org/id/AT5G04460.5" }, { "database": "Ensembl Peptide", "id": "AT5G04460.5", "url": "https://www.ensemblgenomes.org/id/AT5G04460.5" } ] } }, { "isoform_ac": "F4JWA1-1", "url": "https://www.uniprot.org/uniprotkb/F4JWA1/entry", "sequence": { "sequence": "MTSIQPLLQKSESRDDVRAEFERGLEEFMRGHLDECISFGSCSSVHNPEDEDNEDDQLVRRRRRSELEGDNLAESSAARRRQSQILSRWAARQAQEMITTIERRNRESELIALAGLQTVSMLDSSFLRESQSQSPSSRRQGAASERPNTQASGILQMWRELEDEHVLNRARERVRERLRQQRSVESNTNLSSSIASESQLSENNGSLRDSSESENDFGSWSHDRNEHGDNNNTSSREQSPDLGDGERERVRHIARGWMDSRINDHSSNVRQRDDNRRPEWLGDTERERVRIIREWMQMTSQQRGGARATPREDQRSTSEADRNHDAAPQVDRVRVGLAVNHEEGQPPHVRRDLRRVRGRQALLDLLMRAERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPSMASRELLQLRERQTVSGLREGFHNGRENIVHENTSNTDNDNSNTSTNALAIAITAGNSQRVTDESSTSSRQGNDSPILPDNSESNLANADRDWEEDTNQRRIWQENVPVDERPNLEQTTLTQFDGYDNTDINRDETSVSDMHREASGFADDEYRTQEAHGVWHENSSRQSDGNWPGTRSEALRSRRVVQLRRLNRFHPPEDDNVYSMELRELLSRRSVSNLLHSGFRESLDQLIQSYAERRGHTHVDWDLHANLQTAIPDSPERDTDHQVFVRNDNQLNGINGSQLLPTPPAPPPQPIWHQDLHHTSWSRHSMHRSEIEWEVMNDLRGDVARLQQGMSQMQRMLEACMDMQLELQRSVRQEVSAALNRSAGDQGMSAETSEDGSRWSHVSKGTCCVCCDNHIDALLYRCGHMCTCSKCANELVRNGGKCPLCRAPIIEVIRAYSIL", "length": 863, "header": "tr|F4JWA1-1|F4JWA1_ARATH Isoform 1 of RING/U-box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JWA1-1" }, "locus": { "chromosome": "5", "start_pos": 1259521, "end_pos": 1263922, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G04460.4", "url": "https://www.ensemblgenomes.org/id/AT5G04460.4" }, { "database": "Ensembl Peptide", "id": "AT5G04460.4", "url": "https://www.ensemblgenomes.org/id/AT5G04460.4" } ] } }, { "isoform_ac": "F4JWA3-1", "url": "https://www.uniprot.org/uniprotkb/F4JWA3/entry", "sequence": { "sequence": "MTSIQPLLQKSESRDDVRAEFERGLEEFMRGHLDECISFGSCSSVHNPEDEDNEDDQLVRRRRRSELEGDNLAESSAARRRQSQILSRWAARQAQEMITTIERRNRESELIALAGLQTVSMLDSSFLRESQSQSPSSRRQGAASERPNTQASGILQMWRELEDEHVLNRARERVRERLRQQRSVESNTNLSSSIASESQLSENNGSLRDSSESENDFGSWSHDRNEHGDNNNTSSREQSPDLGDGERERVRHIARGWMDSRINDHSSNVRQRDDNRRPEWLGDTERERVRIIREWMQMTSQQRGGARATPREDQRSTSEADRNHDAAPQVDRVRVGLAVNHEEGQPPHVRRDLRRVRGRQALLDLLMRAERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPSMASRELLQLRERQTVSGLREGFHNGRENIVHENTSNTDNDNSNTSTNALAIAITAGNSQRVTDESSTSSRQGNDSPILPDNSESNLANADRDWEEDTNQRRIWQENVPVDERPNLEQTTLTQFDGYDNTDINRDETSVSDMHREASGFADDEYRTQEAHGVWHENSSRQSDGNWPGTRSEALRSRRVVQLRRLNRFHPPEDDNVYSMELRELLSRRSVSNLLHSGFRESLDQLIQSYAERRGHTHVDWDLHANLQTAIPDSPERDTDHQVFVRNDNQLNGINGSQLLPTPPAPPPQPIWHQDLHHTSWSRHSMHRSEIEWEVMNDLRGDVARLQQGMSQMQRMLEACMDMQLELQRSVRQEVSAALNRSAGDQGMSAETSEDGSRWSHVSKGTCCVCCDNHIDALLYR", "length": 825, "header": "tr|F4JWA3-1|F4JWA3_ARATH Computationally mapped isoform of RING/U-box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JWA1-1" }, "locus": { "chromosome": "5", "start_pos": 1259531, "end_pos": 1264025, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G04460.2", "url": "https://www.ensemblgenomes.org/id/AT5G04460.2" }, { "database": "Ensembl Peptide", "id": "AT5G04460.2", "url": "https://www.ensemblgenomes.org/id/AT5G04460.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 706, "start_aa": "Thr", "end_pos": 706, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr706", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BD10", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD10" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BD10", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD10" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G04460", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G04460", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JWA1", "url": "https://www.uniprot.org/uniprotkb/F4JWA1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", 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"database": "Ensembl Peptide", "id": "AT5G18770.1", "url": "https://www.ensemblgenomes.org/id/AT5G18770.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, 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"MLGLGGAIVDSNGNGHLGESLGAMNWNLNNNDVRNYESSTSRFSSPFSSFLHNKVQPHHNLISQTDGLLSTSILDTSQVPSFGQYGIPNDVVGMEPEFGTSYMHSNYNGINTDQVGNLVGLGRERVNVNGNVSLGQNLGSMNWNFDENNMSNHGSSTSRFSSPFSSFEDQSLSHLNEETNELVPGLENLSLYNDHQSINPFLGNTINSHFVENQDQGLVNNENLEFANDDQLERNEILTTYSVEDINNLSINNVKLNSNGETLNSTAANLEMLFPTLDMNIVNQHQGQVLSGGNLEFANDNQLERNAILAGYSIEDINNLSINNHQGQVLSGVNFEFANDNQFERNAILAGYSIEDINNLSINNVNDNSNEETLNSIAANNEMNFTILDVNTINQVNGNSNEETLNSIVANSEINFTTLDVNTINQVDNNFNEETLNSIAANSEMNFTTLDVNIINEEEQGAVDMMDIVITFDEEEEDVAALTDIPEQDVEILTDVPEQGVTDLTDVPLTFDQDWKDDGLMNFMLDVDDMF", "length": 531, "header": "tr|A0A1P8BDR5-1|F4K553_ARATH Computationally mapped isoform of Homeodomain-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MTG10.14 PE=4 SV=1 CANONICAL=F4K553-1" }, "locus": { "chromosome": "5", "start_pos": 24942169, "end_pos": 24946087, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G62110.2", "url": "https://www.ensemblgenomes.org/id/AT5G62110.2" }, { "database": "Ensembl Peptide", "id": "AT5G62110.2", "url": "https://www.ensemblgenomes.org/id/AT5G62110.2" } ] } }, { "isoform_ac": "F4K553-1", "url": "https://www.uniprot.org/uniprotkb/F4K553/entry", "sequence": { "sequence": "MRESVGFSRGVLPLNEESECAFETSQMSQVPRRGQYGTPSDISVDSNGNGHLGESLGAMNWNLNNNDVRNYESSTSRFSSPFSSFLHNKVQPHHNLISQTDGLLSTSILDTSQVPSFGQYGIPNDVVGMEPEFGTSYMHSNYNGINTDQVGNLVGLGRERVNVNGNVSLGQNLGSMNWNFDENNMSNHGSSTSRFSSPFSSFEDQSLSHLNEETNELVPGLENLSLYNDHQSINPFLGNTINSHFVENQDQGLVNNENLEFANDDQLERNEILTTYSVEDINNLSINNVKLNSNGETLNSTAANLEMLFPTLDMNIVNQHQGQVLSGGNLEFANDNQLERNAILAGYSIEDINNLSINNHQGQVLSGVNFEFANDNQFERNAILAGYSIEDINNLSINNVNDNSNEETLNSIAANNEMNFTILDVNTINQVNGNSNEETLNSIVANSEINFTTLDVNTINQVDNNFNEETLNSIAANSEMNFTTLDVNIINEEEQGAVDMMDIVITFDEEEEDVAALTDIPEQDVEILTDVPEQGVTDLTDVPLTFDQDWKDDGLMNFMLDVDDMF", "length": 566, "header": "tr|F4K553-1|F4K553_ARATH Isoform 1 of Homeodomain-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MTG10.14 PE=4 SV=2 CANONICAL=F4K553-1" }, "locus": { "chromosome": "5", "start_pos": 24942169, "end_pos": 24945645, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G62110.1", "url": "https://www.ensemblgenomes.org/id/AT5G62110.1" }, { "database": "Ensembl Peptide", "id": "AT5G62110.1", "url": "https://www.ensemblgenomes.org/id/AT5G62110.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 38, "start_aa": "Thr", "end_pos": 38, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr38", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BDR5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDR5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BDR5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDR5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G62110", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G62110", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F4K553", "url": "https://www.uniprot.org/uniprotkb/F4K553" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", 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"Protein Classification" ] }, { "id": "IPR013989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044832", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044832", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056737", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056737", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G01660", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G01660", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WMNIASM", "url": "https://omabrowser.org/oma/group/WMNIASM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46034", "url": 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G01660", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BDS4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BDS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDS4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K9G6", "url": "https://www.uniprot.org/uniprotkb/F4K9G6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K9G6-1", "url": "https://www.uniprot.org/uniprotkb/F4K9G6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQRRGKFSFRNLTKSQLGGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGCGQLNFDPYGWTSDGSERTSYPAQVPISVRLQCEPLSEEKFKPAIADNYYSSHHFWFELDHFQTRKLTCLLTSFAVKPKPPMNTPNTRQIFRLISSSEKKENSDEVKPSENEPVGSLEVSLSSGGESDSSAAASHPGFSENHPDVQNPKQIDKDHVLEKLKDLVFSHDEHGDNSLTETVEQANIPTCKNLEDRDTLEEETCSEGKIDGSCLVSSPLPHTISQLMHEVKELRACGLENSTKICYLEEKLDKAHKEIYQLTERCNMLESISGPLITKAGGSDLEIHSPDDTSLDPTEAILLLGGFDKDSETWLSSVQSYFPSRNVVKAHSSMSCIRSNASVAKLDGKIYVFGGDDGGRGWTNSAESFNQTDGQWSLCPPLNERKGSLGGATLDGKIFAIGGGNGMVSFSDVEMLDPDIGRWIRTRSMGQERFAVASVEHKSSIYAVGGYDGKEYLNTAERFDPREHSWMNIASMKSRRGCHSLVVLNEKLYAIGGFDGETMVSSVEIYEPRTGTWMTGEPMKDLRGYSAVAVVKDSIYVIGGYKGEEDDILDTVECFKEGEGWKNVPSSSIGRRCFLSAVAL", "length": 656, "header": "tr|F4K9G6-1|F4K9G6_ARATH Isoform 1 of Influenza virus NS1A-binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K9G6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BDS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDS4/entry", "sequence": { "sequence": "MAQRRGKFSFRNLTKSQLGGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGCGQLNFDPYGWTSDGSERTSYPAQVPISVRLQCEPLSEEKFKPAIADNYYSSHHFWFELDHFQTRKLTCLLTSFAVKPKPPMNTPNTRQIFRLISSSEKKENSDEVKPSENEPVGSLEVSLSSGGESDSSAAASHPGFSENHPDVQNPKQIDKDHVLEKLKDLVFSHDEHGDNSLTETVEQANIPTCKNLEDRDTLEEETCSEGKIDGSCLVSSPLPHTISQLMHEVKELRACGLENSTKICYLEEKLDKAHKEIYQLTERCNMLESISGPLITKAGGSDLEIHSPDDTSLDPTEAILLLGGFDKDSETWLSSVQSYFPSRNVVKAHSSMSCIRSNASVAKLDGKIYVFGGDDGGRGWTNSAESFNQTDGQWSLCPPLNERKGSLGGATLDGKIFAIGGGNGMVSFSDVEMLDPDIGRWIRTRSMGQEVNVLLYSHDIW", "length": 515, "header": "tr|A0A1P8BDS4-1|F4K9G6_ARATH Computationally mapped isoform of Influenza virus NS1A-binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K9G6-1" }, "locus": { "chromosome": "5", "start_pos": 245279, "end_pos": 249165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G01660.3", "url": "https://www.ensemblgenomes.org/id/AT5G01660.3" }, { "database": "Ensembl Peptide", "id": "AT5G01660.3", "url": "https://www.ensemblgenomes.org/id/AT5G01660.3" } ] } }, { "isoform_ac": "F4K9G6-1", "url": "https://www.uniprot.org/uniprotkb/F4K9G6/entry", "sequence": { "sequence": "MAQRRGKFSFRNLTKSQLGGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGCGQLNFDPYGWTSDGSERTSYPAQVPISVRLQCEPLSEEKFKPAIADNYYSSHHFWFELDHFQTRKLTCLLTSFAVKPKPPMNTPNTRQIFRLISSSEKKENSDEVKPSENEPVGSLEVSLSSGGESDSSAAASHPGFSENHPDVQNPKQIDKDHVLEKLKDLVFSHDEHGDNSLTETVEQANIPTCKNLEDRDTLEEETCSEGKIDGSCLVSSPLPHTISQLMHEVKELRACGLENSTKICYLEEKLDKAHKEIYQLTERCNMLESISGPLITKAGGSDLEIHSPDDTSLDPTEAILLLGGFDKDSETWLSSVQSYFPSRNVVKAHSSMSCIRSNASVAKLDGKIYVFGGDDGGRGWTNSAESFNQTDGQWSLCPPLNERKGSLGGATLDGKIFAIGGGNGMVSFSDVEMLDPDIGRWIRTRSMGQERFAVASVEHKSSIYAVGGYDGKEYLNTAERFDPREHSWMNIASMKSRRGCHSLVVLNEKLYAIGGFDGETMVSSVEIYEPRTGTWMTGEPMKDLRGYSAVAVVKDSIYVIGGYKGEEDDILDTVECFKEGEGWKNVPSSSIGRRCFLSAVAL", "length": 656, "header": "tr|F4K9G6-1|F4K9G6_ARATH Isoform 1 of Influenza virus NS1A-binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K9G6-1" }, "locus": { "chromosome": "5", "start_pos": 244250, "end_pos": 249207, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G01660.1", "url": "https://www.ensemblgenomes.org/id/AT5G01660.1" }, { "database": "Ensembl Peptide", "id": "AT5G01660.1", "url": "https://www.ensemblgenomes.org/id/AT5G01660.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BDS4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDS4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BDS4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDS4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G01660", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G01660", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { 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"common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JZ91", "locus": {} } ], "crossref": [ { "id": "F4JZ91", "url": "https://alphafold.ebi.ac.uk/entry/F4JZ91", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G05240", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G05240", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "830406", "url": "https://www.ncbi.nlm.nih.gov/gene/830406", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016953", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016953", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G05240", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G05240", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LHCEHGL", "url": "https://omabrowser.org/oma/group/LHCEHGL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8BEB0", "url": "https://www.orthodb.org/?gene=A0A1P8BEB0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4JZ91", "url": "https://www.orthodb.org/?gene=F4JZ91", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33924", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33924", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33924:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33924:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27747", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27747", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_196143", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196143", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G05240", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G05240", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BEB0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BEB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JZ91", "url": "https://www.uniprot.org/uniprotkb/F4JZ91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JZ91-1", "url": "https://www.uniprot.org/uniprotkb/F4JZ91-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEHDAVSGGCSPIPRSDLKIGGNELDERQELSKIEPVTPTLNSGNTVHGSKDVEKANGMSQVGKVSESFVTEGKNIKTELLVGQEVKSSSSKLVLNTDVDCDKRALLKRCDNADAVSSCLNDDLTSVCSSRISQKTSSMDVYSECGSSNGSVAKRDPMKVWTEMKQNGYLSNPNGGISTTSSSCLISSSHGGIPAPKKRGRKTKINNDAAVAKKRKIERKEEVDRFARLAAPSGLLNELNPGIINHVRNKKQVLSIIENIVKSERDAGNYHSTLRHSNSADGSPRKNLGDACRSEFYQVFQYALPKDMYSMRYYAEKCADDEFSEENNTVRSRFQVAGKFSENDSSLSSEDASDLNSASVLTVNAATVASQWLELLHQDIKGRVSALRRSRKRVRAVVTIELPHLIRKEFPADQENDPTLLLGGASKASTVDIHKSRWMTLFKQLEHKLSEEESQLESWLNQVRYMQSHCDEGLQHLSLSSGQNFLQLGMPLDSRAANALISDKDLVIKAAAASIYSTCSFLEENITCS", "length": 530, "header": "tr|F4JZ91-1|F4JZ91_ARATH Isoform 1 of Cation-transporting ATPase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JZ91-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BEB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEB0/entry", "sequence": { "sequence": "MSQVGKVSESFVTEGKNIKTELLVGQEVKSSSSKLVLNTDVDCDKRALLKRCDNADAVSSCLNDDLTSVCSSRISQKTSSMDVYSECGSSNGSVAKRDPMKVWTEMKQNGYLSNPNGGISTTSSSCLISSSHGGIPAPKKRGRKTKINNDAAVAKKRKIERKEEVDRFARLAAPSGLLNELNPGIINHVRNKKQVLSIIENIVKSERDAGNYHSTLRHSNSADGSPRKNLGDACRSEFYQVFQYALPKDMYSMRYYAEKCADDEFSEENNTVRSRFQVAGKFSENDSSLSSEDASDLNSASVLTVNAATVASQWLELLHQDIKGRVSALRRSRKRVRAVVTIELPHLIRKEFPADQENDPTLLLGGASKASTVDIHKSRWMTLFKQLEHKLSEEESQLESWLNQVRYMQSHCDEGLQHLSLSSGQNFLQLGMPLDSRAANALISDKDLVIKAAAASIYSTCSFLEENITCS", "length": 471, "header": "tr|A0A1P8BEB0-1|F4JZ91_ARATH Computationally mapped isoform of Cation-transporting ATPase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JZ91-1" }, "locus": { "chromosome": "5", "start_pos": 1553814, "end_pos": 1555930, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G05240.2", "url": "https://www.ensemblgenomes.org/id/AT5G05240.2" }, { "database": "Ensembl Peptide", "id": "AT5G05240.2", "url": "https://www.ensemblgenomes.org/id/AT5G05240.2" } ] } }, { "isoform_ac": "F4JZ91-1", "url": "https://www.uniprot.org/uniprotkb/F4JZ91/entry", "sequence": { "sequence": "MEEHDAVSGGCSPIPRSDLKIGGNELDERQELSKIEPVTPTLNSGNTVHGSKDVEKANGMSQVGKVSESFVTEGKNIKTELLVGQEVKSSSSKLVLNTDVDCDKRALLKRCDNADAVSSCLNDDLTSVCSSRISQKTSSMDVYSECGSSNGSVAKRDPMKVWTEMKQNGYLSNPNGGISTTSSSCLISSSHGGIPAPKKRGRKTKINNDAAVAKKRKIERKEEVDRFARLAAPSGLLNELNPGIINHVRNKKQVLSIIENIVKSERDAGNYHSTLRHSNSADGSPRKNLGDACRSEFYQVFQYALPKDMYSMRYYAEKCADDEFSEENNTVRSRFQVAGKFSENDSSLSSEDASDLNSASVLTVNAATVASQWLELLHQDIKGRVSALRRSRKRVRAVVTIELPHLIRKEFPADQENDPTLLLGGASKASTVDIHKSRWMTLFKQLEHKLSEEESQLESWLNQVRYMQSHCDEGLQHLSLSSGQNFLQLGMPLDSRAANALISDKDLVIKAAAASIYSTCSFLEENITCS", "length": 530, "header": "tr|F4JZ91-1|F4JZ91_ARATH Isoform 1 of Cation-transporting ATPase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JZ91-1" }, "locus": { "chromosome": "5", "start_pos": 1553799, "end_pos": 1556605, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G05240.1", "url": "https://www.ensemblgenomes.org/id/AT5G05240.1" }, { "database": "Ensembl Peptide", "id": "AT5G05240.1", "url": "https://www.ensemblgenomes.org/id/AT5G05240.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BEB0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEB0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BEB0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEB0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G05240", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G05240", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JZ91", "url": "https://www.uniprot.org/uniprotkb/F4JZ91" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 526, "end_pos": 528, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JZ91-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 530, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JZ91-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JZ91" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 150, "end_pos": 152 }, { "start_pos": 328, "end_pos": 330 }, { "start_pos": 344, "end_pos": 346 }, { "start_pos": 526, "end_pos": 528 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K4U5-1", "uniprot_ac": "F4K4U5", "uniprot_id": "F4K4U5_ARATH", "mass": { "chemical_mass": 92285.0, "monoisotopic_mass": 92285.0 }, "refseq": {}, "gene_names": [ { "name": "K7J8.6", "type": "synonym", "evidence": [ { "id": "F4K4U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K4U5" } ] }, { "name": "K7J8_6", "type": "synonym", "evidence": [ { "id": "F4K4U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K4U5" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein phosphatase 4 regulatory subunit-like protein", "type": "synonym", "evidence": [ { "id": "F4K4U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K4U5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K4U5", "url": "https://www.uniprot.org/uniprotkb/F4K4U5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4K4U5", "locus": {} } ], "crossref": [ { "id": "F4K4U5", "url": "https://alphafold.ebi.ac.uk/entry/F4K4U5", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G49390", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G49390", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834999", "url": "https://www.ncbi.nlm.nih.gov/gene/834999", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006887", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006887", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051137", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051137", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G49390", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G49390", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ALMTHNN", "url": "https://omabrowser.org/oma/group/ALMTHNN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23318", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23318", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23318:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23318:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04802", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04802", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22972", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22972", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G49390", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G49390", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BEH4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BEH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4U5", "url": "https://www.uniprot.org/uniprotkb/F4K4U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4U5-1", "url": "https://www.uniprot.org/uniprotkb/F4K4U5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATRGNTNSMQRVKVYRLNEDGQWDDKGTGHITMDYMERSEVFNLYVIDEDDNATLLAHRISIDNIYKQQDDSIISWIDPQHSAQLALSFQETAGCTIVWNQISSMQRILHFDSLNSEAFHNVISELKELPDVNISNLPLILKVVADYGNTDQMRLTELMLKNQGAFFQKLIDVFDDCENRKDIDGLHMMFNIVKEIISVNNYQILEIILGDQLFMKIFGCLEYDPDVPQSKDHRTSLRKNVVFVEDIPIKNPLVLSKIHQTYRIDFLKDVVLTDVLDVATSAFLDSVINANKATVLTLLKDDIQESFARLRSPSTSDESRNNLVYFLLEFCSLCTKEKNVSVLRELIRVGLFDIIAEVLMSSDKKLVLMGAKILSVLLAQDSIRLCSYVVRPETYLLGLLVKGMMEDFGDEMESLFVDIIQNVLGCGGAQVSDKKTNMQRIIWDIFCEKHLPELVDFIMASCPERPGDTSEGAFVRVGSHRGTKPGILLRICELLCSCVQLDPSRTNFLHNSVIEKVLLLTRRKEKTLVAAAVRFVRTLLSVHNDNVQSYIVENNTLKPIIEVFVANRHRDNLMTAAVLELLEHIRKEYAVLVKYVGDTFWDQLAPFENLRSIKDLKTKYEKGPKSTTDDESDMRQDGRALDEKKPASASSTQMEEADPHNSNATAASSASSTQMEDAEPYNPDVTAASSTCSTQMEVAEPYNPGVTAASSTSSTQMEEADPYNPDVTAASSTSITPMEVAEPYNPDVTAASSTSITPMEVAEPYNPGVTAASSVSPSKRSGGLVDYEDDEDELEKSKRQKLSSTSEGNKNTPEQGGEAKEPGEL", "length": 826, "header": "tr|F4K4U5-1|F4K4U5_ARATH Isoform 1 of Serine/threonine-protein phosphatase 4 regulatory subunit-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4K4U5-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BEH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEH4/entry", "sequence": { "sequence": "MATRGNTNSMQRVKVYRLNEDGQWDDKGTGHITMDYMERSEVFNLYVIDEDDNATLLAHRISIDNIYKQQDDSIISWIDPQHSAQLALSFQETAGCTIVWNQISSMQRILHFDSLNSEAFHNVISELKELPDVNISNLPLILKVVADYGNTDQMRLTELMLKNQGAFFQKLIDVFDDCENRKDIDGLHMMFNIVKEIISVNNYQILEIILGDQLFMKIFGCLEYDPDVPQSKDHRTSLRKNVVFVEDIPIKNPLVLSKIHQTYRIDFLKDVVLTDVLDVATSAFLDSVINANKATVLTLLKDDIQESFARLRSPSTSDESRNNLVFPLHEASIIFLRLWSFCNSWSNVWKWLF", "length": 353, "header": "tr|A0A1P8BEH4-1|F4K4U5_ARATH Computationally mapped isoform of Serine/threonine-protein phosphatase 4 regulatory subunit-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K4U5-1" }, "locus": { "chromosome": "5", "start_pos": 20023449, "end_pos": 20027078, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G49390.2", "url": "https://www.ensemblgenomes.org/id/AT5G49390.2" }, { "database": "Ensembl Peptide", "id": "AT5G49390.2", "url": "https://www.ensemblgenomes.org/id/AT5G49390.2" } ] } }, { "isoform_ac": "F4K4U5-1", "url": "https://www.uniprot.org/uniprotkb/F4K4U5/entry", "sequence": { "sequence": "MATRGNTNSMQRVKVYRLNEDGQWDDKGTGHITMDYMERSEVFNLYVIDEDDNATLLAHRISIDNIYKQQDDSIISWIDPQHSAQLALSFQETAGCTIVWNQISSMQRILHFDSLNSEAFHNVISELKELPDVNISNLPLILKVVADYGNTDQMRLTELMLKNQGAFFQKLIDVFDDCENRKDIDGLHMMFNIVKEIISVNNYQILEIILGDQLFMKIFGCLEYDPDVPQSKDHRTSLRKNVVFVEDIPIKNPLVLSKIHQTYRIDFLKDVVLTDVLDVATSAFLDSVINANKATVLTLLKDDIQESFARLRSPSTSDESRNNLVYFLLEFCSLCTKEKNVSVLRELIRVGLFDIIAEVLMSSDKKLVLMGAKILSVLLAQDSIRLCSYVVRPETYLLGLLVKGMMEDFGDEMESLFVDIIQNVLGCGGAQVSDKKTNMQRIIWDIFCEKHLPELVDFIMASCPERPGDTSEGAFVRVGSHRGTKPGILLRICELLCSCVQLDPSRTNFLHNSVIEKVLLLTRRKEKTLVAAAVRFVRTLLSVHNDNVQSYIVENNTLKPIIEVFVANRHRDNLMTAAVLELLEHIRKEYAVLVKYVGDTFWDQLAPFENLRSIKDLKTKYEKGPKSTTDDESDMRQDGRALDEKKPASASSTQMEEADPHNSNATAASSASSTQMEDAEPYNPDVTAASSTCSTQMEVAEPYNPGVTAASSTSSTQMEEADPYNPDVTAASSTSITPMEVAEPYNPDVTAASSTSITPMEVAEPYNPGVTAASSVSPSKRSGGLVDYEDDEDELEKSKRQKLSSTSEGNKNTPEQGGEAKEPGEL", "length": 826, "header": "tr|F4K4U5-1|F4K4U5_ARATH Isoform 1 of Serine/threonine-protein phosphatase 4 regulatory subunit-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4K4U5-1" }, "locus": { "chromosome": "5", "start_pos": 20023442, "end_pos": 20030387, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G49390.1", "url": "https://www.ensemblgenomes.org/id/AT5G49390.1" }, { "database": "Ensembl Peptide", "id": "AT5G49390.1", "url": "https://www.ensemblgenomes.org/id/AT5G49390.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BEH4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEH4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BEH4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEH4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G49390", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G49390", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AS21-1", "protein_name": "SMEK homolog 1", "gene_name": "Ppp4r3a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFDDMSSPGLELPSCELSRLEEVAELVASSLPSPLRREKLALALENEGYIKKLLELFHVCEDLENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPTLSQPRKHREFLTKTAKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGMLQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGILPALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDVSKKLTEQKITSKDILLINLIIEHMICDTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHCMHVLTAPLLANTTEDKPSKDDFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLMASKHAFLALCALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRVEDIKSLTAHVIENYWKALEDVDYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEKEVLLKTNLSGRQSPSFKLSLSSGTKTNLTSQSSATSLPGSPGSPGSPGSPGSPGSVPKSTSQPAAITTKGGLVGLVDYPDDDEDDDEDEDKEDTLPVSKKAKFES", "length": 833 }, "evidence": [ { "id": "F4K4U5", "url": "https://omabrowser.org/oma/group/F4K4U5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54I18-1", "protein_name": "Suppressor of Mek1", "gene_name": "smkA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPLRKRVKVYQLDNSGKWDDKGTGHVSCIYVDALCAMGLIVRSESDNSVILQTRLSAEDIYQKQQDSLIVWTEPDSQLDLALSFQDSLGCQDIWENILQYQNQRTGSCDSVDLDLPPVSINNLQTINELLEASLPMLDKDKIINSIFKEDLVRSLLDLFDEIEKSGEGGVHLFQIFNIFKNLILFNDTSILEVILSEDYLVRVMGALEYDPEISENNRIKHREFLNQQVVFKQVIKFPSKSLIGTIHQTFRIQYLKDVVLPRVLDDVTFSSLNSLIYFNNIDIVSQIQNDSDFLENLFSEIQKSEKNSEERKDLILFLQDLCNLAKGLQIQSKSTFFTVVVSLGLFKTLSAILDDENVQTRVSCTEIVLSTLLHDPEILRSYLCSPTSGNSKFLVQLINLFITDKDIGVKNQIVEIIKTLLEADSYDSSDFFRLFYDKGIDLLVSPLNEVYKGEPTIPGDPSSNLDSFVLYNIMELVIYCIKHHCYRIKHFIVEEGIAKKILRYTNPTGSGGGGGGGGNSERYLILGSIRFFRSMVNMKDDLYNQHIIQENLFEPIIEVFKSNISRYNLLNSAIIELFQYIYKENIRDLIVYLVERYRELFESVTYTDVLKQLILKYEQIKDSSFESPETSCNNNDSSSNDIDSKPIIGNNKINHNYQRTQREIDEEEEEAYFNRDDDSEDSDDEDELIPISINNNNNNNNNNKQICTNNENNMEKNDDNIEKDNENTNNGNGSSHIKIVDYEDEDDEDDEINKSVESDDIVEKHEIIDKNEKKDEIMKENNDSDNDDNDNNDNDNDNDNNSDIENKNHLNNNGNNENNENNDDVQDKSNNKNNSDKINEDEKIEKQDEMKENLEMEEIDEKVKEKQPKDIKKENQSQPDETVFNGKSNNSNNNNNNNNNNSNNQEIGDNRKTTPKRKLDYEKNESVVSKKIDKSNGPTSIDKDINGCDESPNKKLNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNDENELSSASEEEEEQLENGKHIKKFKRGKKDSNNSSNNSNNSSPTPSELHV", "length": 1046 }, "evidence": [ { "id": "F4K4U5", "url": "https://omabrowser.org/oma/group/F4K4U5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5SP90-1", "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3", "gene_name": "smek1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTDTRRRVKVYTLNEDRQWDDRGTGHVSSAYVERLKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQELIDESEEERFDDMSSPGLELPPCELSRLEEVAELVASSLPSPLRREKLALALENEGYIRKLLELFRVCEDLENREGLHHLYDIIKGIFLLNRTALFEVMFSEECIMDVIGCLEFDPSLPQPRRHREFLTTTARFKEVIPISDPELRQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGMLQDDEKFLTELFAQLTDEATDDDKRHELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGILQALEVILGMDDVQVRGAATDIFSYLVEYNPSMVREFVMQESQQNDDDILLINLIIEHMICDTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLSFFYKHCMHVLSAPLLANTTEEKPSKDDFQTCQLLALIVELLTFCVEHHTYHIKNYIINKDILRRVLVLTASQHAFLALCALRFMRKIIGLKDEFYNRYIMRNFLFEPVVKAFLNNGSRYNLINSAIIEMFEYVRVEDVKSLTAHIIENYWKGLEDVDYVQTFKGLKLRYEQQRERQDNPKLDSMRSILRNHRFRRDARTLEDEEEMWFNTDEEDLEDGEAVVPPSDKMKNDEDLMDPISKFMERKKLKDSEEKEVLTGKASLSGRQSPSFKLSFSSSPKASLSSPPTASLHPGSPGSPSSPGTGARSSPPSAAVTTKGGLVGLVDYPDDDEEDEDEEDADSKEESPPLSKKSKLSS", "length": 818 }, "evidence": [ { "id": "F4K4U5", "url": "https://omabrowser.org/oma/group/F4K4U5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6IN85-1", "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3A", "gene_name": "PPP4R3A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFDDMSSPGLELPSCELSRLEEIAELVASSLPSPLRREKLALALENEGYIKKLLELFHVCEDLENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPALSQPRKHREFLTKTAKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGMLQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGILPALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDVSKKLTEQKITSKDILLINLIIEHMICDTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHCMHVLTAPLLANTTEDKPSKDDFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLMASKHAFLALCALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRVEDIKSLTAHVIENYWKALEDVDYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEKEVLLKTNLSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGLVDYPDDDEDDDEDEDKEDTLPLSKKAKFDS", "length": 833 }, "evidence": [ { "id": "F4K4U5", "url": "https://omabrowser.org/oma/group/F4K4U5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P2K6-1", "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3A", "gene_name": "Ppp4r3a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFDDMSSPGLELPSCELSRLEEIAELVASSLPSPLRREKLALALENEGYIKKLLELFHVCEDLENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPTLSQPRKHREFLTKTAKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGMLQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGILPALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDDILLINLIIEHMICDTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHCMHVLTAPLLANTTEDKPSKDDFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLMASKHAFLALCALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRVEDIKSLTAHVIENYWKALEDVDYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEKEVLLKTNLSGRQSPSFKLSLSSGTKTNLTSQSSATSLPGSPGSPGSPGSPGSPGSVPKSTSQTAAITTKGGLVGLVDYPDDDEDDDEDEDKEDTLPVSKKAKFES", "length": 820 }, "evidence": [ { "id": "F4K4U5", "url": "https://omabrowser.org/oma/group/F4K4U5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VFS5-1", "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3", "gene_name": "flfl", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTTDTRRRVKLYALNAERQWDDRGTGHVSSTYVERLKGISLLVRAESDGSLLLESKIQPDTAYQKQQDTLIVWSEGDNFDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIVEESEDERFEDMSDTAPPIELPPCELSRLEDISETIQSCLSTPLRKEKLSMALESESYIKKLLNLFHVCEDLDNTEGLHHLFEIFKNIFLLNKNALFEIMFADDTIFDVVGCLEYDPSVSQPKKHRQYLKQLAKFREAVPIKNLDLLAKIHQTFRVQYIQDIILPTPSVFVEDNMLNTLSSFIFFNKVEIVTMIQDDERYLLDVFAVLTDPTTGDAKRRDTVLFLKEFCNYAQNLQPQGKDSFYKTLTCLGILQALELTLVMNDKKTKSASIDILTAIVEFSPLVVRNYTLNQANRPEVERMLLNIAIEQMLNDSEPELGIAVQLMGIVKILLEPENMLTEKGDFLNFFYKYSVQTLVAPVILNTIGDRPQNEDYQTAQLLGIVLDILSFCVEHHSYHIKNFLLQKDLLKRILVLMKSTHTFLVLGALRLLRKIIALKDEFYNRHIVKCNLFAPVVDAFIRNNGRYNLLESAILELFEFIKLEDIRTLCVYFVENFSKIFDEIEYVQTFKYLKNRYDQYQDRLKDRDKMENRTDGGLPIIRSGGRFRRDQRQMEEEEEMWFNEEDDFTEEIDTYNNVMKSVSEKNGPQTQNQQKSSPPHSTSPHSGLLGSLSTTASSTATSATSGAPVASGSSSPEAISADEQTQAAVHLAAAALQHHQQQQQQQQQNPFQQQTQPEIAELQQQLSSVEAPQSQELELSQSAAASASPTSSSSSLEASTSSSSASSSSSSSSSSSPPGSSAAASLCDSATVAAVAASQFLSTIATAMAASVTAAAATNSSPSISPAPAVSSPDIENADAQLPPSDDASSPASGEQDANSTEGTSSEADKTTAKKGLVDYESDSGEDDYEEDEYSEGPQAQKRARQA", "length": 980 }, "evidence": [ { "id": "F4K4U5", "url": "https://omabrowser.org/oma/group/F4K4U5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4K4U5", "url": "https://www.uniprot.org/uniprotkb/F4K4U5" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F4K4U5", "url": "https://www.uniprot.org/uniprotkb/F4K4U5" } ], "pmid": "" }, { "name": "protein phosphatase 4 complex", "id": "GO:0030289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030289", "evidence": [ { "database": "UniProtKB", "id": "F4K4U5", "url": "https://www.uniprot.org/uniprotkb/F4K4U5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "F4K4U5", "url": "https://www.uniprot.org/uniprotkb/F4K4U5" } ], "pmid": "" }, { "name": "protein phosphatase activator activity", "id": "GO:0072542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072542", "evidence": [ { "database": "UniProtKB", "id": "F4K4U5", "url": "https://www.uniprot.org/uniprotkb/F4K4U5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 340, "end_pos": 342, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" }, { "start_pos": 555, "end_pos": 557, "annotation": "n_glycosylation_sequon" }, { "start_pos": 664, "end_pos": 666, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4K4U5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 826, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4K4U5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4K4U5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4K4U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K4U5" }, { "id": "PF22972", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22972" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PP4R3 EVH1-like", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 108, "start_aa": "Gln", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "F4K4U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K4U5" }, { "id": "PF04802", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04802" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Serine/threonine-protein phosphatase 4 regulatory subunit 3-like central", "eco_id": "ECO_0000259", "start_pos": 149, "end_pos": 622, "start_aa": "Gly", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 }, { "start_pos": 340, "end_pos": 342 }, { "start_pos": 53, "end_pos": 55 }, { "start_pos": 555, "end_pos": 557 }, { "start_pos": 664, "end_pos": 666 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", 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"MAILLHSLSLHPPNPKPQNPYKPKILSSSATFRRDVVLRTASLCFVSFIFQNQIPESLADPLKSTKPLRLGIANTKSWFQYFGSGFAIRVPPDFEDVNEPEDYSAGLSLYGDKAKPQTFAARFQTPDGSEVLSVVIRPSNQLKITFLEAKDISDLGSLKAAARLFVPGAATIYSARTIKVKEEEGLRNYYFYEFGRDEERIALVASVNRGKVYIAGAAAPESKWKDDELKLRSAAISFTIL", "length": 241, "header": "tr|F4K4A6-1|F4K4A6_ARATH Isoform 1 of Tagatose-6-phosphate ketose/aldose isomerase, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K4A6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BEU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEU1/entry", "sequence": { "sequence": "MAILLHSLSLHPPNPKPQNPYKPKILSSSATFRRDVVLRTASLCFVSFIFQNQIPESLADPLKSTKPLRLGIANTKSWFQYFGSGFAIRVPPDFEDVNEPEDYSAGLSLYGDKAKPQTFAARFQTPDGSEVLSVVIRPSNQLKITFLEAKDISDLGSLKAAARLFVPGAATIYSARTIKVKEEEGLRNYYFYEFGRDEERIALVASVNRGKVSAAKHTFDYSSTFIFRDSLLTLRLFLNLEKVYIAGAAAPESKWKDDELKLRSAAISFTIL", "length": 272, "header": "tr|A0A1P8BEU1-1|F4K4A6_ARATH Computationally mapped isoform of Tagatose-6-phosphate ketose/aldose isomerase, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K4A6-1" }, "locus": { "chromosome": "5", "start_pos": 9674326, "end_pos": 9676219, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G27390.2", "url": "https://www.ensemblgenomes.org/id/AT5G27390.2" }, { "database": "Ensembl Peptide", "id": "AT5G27390.2", "url": "https://www.ensemblgenomes.org/id/AT5G27390.2" } ] } }, { "isoform_ac": "A0A1P8BEU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEU8/entry", "sequence": { "sequence": "MAILLHSLSLHPPNPKPQNPYKPKILSSSATFRRDVVLRTASLCFVSFIFQNQIPESLADPLKSTKPLRLGIANTKSWFQYFGSGFAIRVPPDFEDVNEPEDYSAGLSLYGDKAKPQTFAARFQTPDGSEVLSVVIRPSNQLKITFLEAKDISDLGSLKAAARLFVPGSLNHIHIRKLLRILSLIFFMHEQVRQQFTLLVQSR", "length": 203, "header": "tr|A0A1P8BEU8-1|F4K4A6_ARATH Computationally mapped isoform of Tagatose-6-phosphate ketose/aldose isomerase, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K4A6-1" }, "locus": { "chromosome": "5", "start_pos": 9674377, "end_pos": 9676189, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G27390.4", "url": "https://www.ensemblgenomes.org/id/AT5G27390.4" }, { "database": "Ensembl Peptide", "id": "AT5G27390.4", "url": "https://www.ensemblgenomes.org/id/AT5G27390.4" } ] } }, { "isoform_ac": "A0A1P8BEZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEZ3/entry", "sequence": { "sequence": "MAILLHSLSLHPPNPKPQNPYKPKILSSSATFRRDVVLRTASLCFVSFIFQNQIPESLADPLKSTKPLRLGIANTKSWFQYFGSGFAIRVPPDFEDVNEPEDYSAGLSLYGDKAKPQTFAARFQTPDGSEVLSVVIRPSNQLKITFLEAKDISDLGSLKAAARLFVPGKGRRRFKKLLLLRVW", "length": 183, "header": "tr|A0A1P8BEZ3-1|F4K4A6_ARATH Computationally mapped isoform of Tagatose-6-phosphate ketose/aldose isomerase, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K4A6-1" }, "locus": { "chromosome": "5", "start_pos": 9674373, "end_pos": 9676208, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G27390.3", "url": "https://www.ensemblgenomes.org/id/AT5G27390.3" }, { "database": "Ensembl Peptide", "id": "AT5G27390.3", "url": "https://www.ensemblgenomes.org/id/AT5G27390.3" } ] } }, { "isoform_ac": "F4K4A6-1", "url": "https://www.uniprot.org/uniprotkb/F4K4A6/entry", "sequence": { "sequence": "MAILLHSLSLHPPNPKPQNPYKPKILSSSATFRRDVVLRTASLCFVSFIFQNQIPESLADPLKSTKPLRLGIANTKSWFQYFGSGFAIRVPPDFEDVNEPEDYSAGLSLYGDKAKPQTFAARFQTPDGSEVLSVVIRPSNQLKITFLEAKDISDLGSLKAAARLFVPGAATIYSARTIKVKEEEGLRNYYFYEFGRDEERIALVASVNRGKVYIAGAAAPESKWKDDELKLRSAAISFTIL", "length": 241, "header": "tr|F4K4A6-1|F4K4A6_ARATH Isoform 1 of Tagatose-6-phosphate ketose/aldose isomerase, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K4A6-1" }, "locus": { "chromosome": "5", "start_pos": 9674320, "end_pos": 9676214, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G27390.1", "url": "https://www.ensemblgenomes.org/id/AT5G27390.1" }, { "database": "Ensembl Peptide", "id": "AT5G27390.1", "url": "https://www.ensemblgenomes.org/id/AT5G27390.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BEU1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEU1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BEU1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEU1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G27390", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G27390", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4K4A6", "url": "https://www.uniprot.org/uniprotkb/F4K4A6" } ], "pmid": "" }, { "name": "extrinsic component of membrane", "id": "GO:0019898", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019898", "evidence": [ { "database": "UniProtKB", "id": "F4K4A6", "url": "https://www.uniprot.org/uniprotkb/F4K4A6" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4K4A6", "url": "https://www.uniprot.org/uniprotkb/F4K4A6" } ], "pmid": "" }, { "name": "photosystem II oxygen evolving complex", "id": "GO:0009654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009654", "evidence": [ { "database": "UniProtKB", "id": "F4K4A6", "url": "https://www.uniprot.org/uniprotkb/F4K4A6" } ], 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"https://www.ensemblgenomes.org/id/AT5G43660.4" } ] } }, { "isoform_ac": "A0A1P8BF15-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BF15/entry", "sequence": { "sequence": "MAIPRLSLLPNNEHNSDNYEDLELEFSSSVLRSLERYLPPEILTANREEKAKFMSDILHKYISREECAKAIRFKNYREWIMSNYQPRFRELYKLDPESLLLPCFRKAVRENTEESFRRIMFEPFPGVYVFKMFQPDFFQKLLVEVENMRKWLHEAKLMIRKPNNKSKYGVVLDDFGMDIMLKPLVEDFIFPICKVFFPQVCGTMFDTQHGFVIENCEDRDAELGFHVENSDITLNVCLSKQSEGGEILFTGTRCNKHLKAGPKPEEIFEYCHEPGQAILHLGCHSHGAKAAITSCSRANMILWCIK", "length": 306, "header": "tr|A0A1P8BF15-1|F4K794_ARATH Computationally mapped isoform of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=CP3 PE=4 SV=1 CANONICAL=F4K794-1" }, "locus": { "chromosome": "5", "start_pos": 17535976, "end_pos": 17538375, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G43660.3", "url": "https://www.ensemblgenomes.org/id/AT5G43660.3" }, { "database": "Ensembl Peptide", "id": "AT5G43660.3", "url": 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"https://www.ensemblgenomes.org/id/AT5G43660.1" }, { "database": "Ensembl Peptide", "id": "AT5G43660.1", "url": "https://www.ensemblgenomes.org/id/AT5G43660.1" } ] } }, { "isoform_ac": "Q9FIX4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIX4/entry", "sequence": { "sequence": "MAIPRLSLLPNNEHNSDNYEDLELEFSSSVLRSLERYLPPEILTANREEKAKFMSDILHKYISREECAKAIRFKNYREWIMSNYQPRFRELYKLDPESLLLPCFRKAVRENTEESFRRIMFEPFPGVYVFKMFQPDFFQKLLVEVENMRKWLHEAKLMIRKPNNKSKYGVVLDDFGMDIMLKPLVEDFIFPICKVFFPQVCGTMFDTQHGFVIENCEDRDAELGFHVENSDITLNVCLSKQSEGGEILFTGTRCNKHLKAGPKPEEIFEYCHEPGQAILHLGCHSHGAKAAITSCSRANMILWCINSLFREMQTYDNEFRDWCGQCAREKKEKKSQSLASKRKVKKRKKDMILLKFIRCFV", "length": 361, "header": "tr|Q9FIX4-1|Q9FIX4_ARATH Computationally mapped isoform of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=CP3 PE=4 SV=1 CANONICAL=F4K794-1" }, "locus": { "chromosome": "5", "start_pos": 17536085, "end_pos": 17538425, "strand": "+", "evidence": [ { "database": "Ensembl 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] }, { "id": "IPR001958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G42210", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G42210", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LGHLFMT", "url": "https://omabrowser.org/oma/group/LGHLFMT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8BEX6", "url": "https://www.orthodb.org/?gene=A0A1P8BEX6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4K1G9", "url": "https://www.orthodb.org/?gene=F4K1G9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23504", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23504", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23504:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23504:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G42210", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G42210", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BEX6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": 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CANONICAL=F4K1G9-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BEX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEX6/entry", "sequence": { "sequence": "MEETTTFHGLGHLFITIFLYCFSSFIVAPVITDISMAALCPGKDECSLAIYLSGFQQVITGVGSLIMMPLVGSLSDKHGRKCLLTLPMTLNILPLVTLAYSRGATIFYMYYVLKTLTSIVCEGSVLCLALAYVADNVPEGRRASAFGILTGITSCAFVCANLSARFLSIGVTFQVAAAMGILSTLYMRLFLPDSIRDNSLGAPIVINEKLSSPLLEDCPGHRNRIFRAIRLVHEMASLMRSSVPLFQVAMVSFFSSLAEAGLHASSMYYLKAKFHFNKDQFADLMIIVGASGSISQLLFMPVLVPALKEERLLSIGLFFGCAHMFLLCVAWSSWVPYMAAIFALFSIFPSSCMRSIVSKQVASYEQGKAQGIISSICSLANVISPLAFSPLTGFITIYISIV", "length": 402, "header": "tr|A0A1P8BEX6-1|F4K1G9_ARATH Computationally mapped isoform of Major facilitator superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K1G9-1" }, "locus": { "chromosome": "5", "start_pos": 16866034, "end_pos": 16869967, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G42210.2", "url": "https://www.ensemblgenomes.org/id/AT5G42210.2" }, { "database": "Ensembl Peptide", "id": "AT5G42210.2", "url": "https://www.ensemblgenomes.org/id/AT5G42210.2" } ] } }, { "isoform_ac": "F4K1G9-1", "url": "https://www.uniprot.org/uniprotkb/F4K1G9/entry", "sequence": { "sequence": "MEETTTFHGLGHLFITIFLYCFSSFIVAPVITDISMAALCPGKDECSLAIYLSGFQQVITGVGSLIMMPLVGSLSDKHGRKCLLTLPMTLNILPLVTLAYSRGATIFYMYYVLKTLTSIVCEGSVLCLALAYVADNVPEGRRASAFGILTGITSCAFVCANLSARFLSIGVTFQVAAAMGILSTLYMRLFLPDSIRDNSLGAPIVINEKLSSPLLEDCPGHRNRIFRAIRLVHEMASLMRSSVPLFQVAMVSFFSSLAEAGLHASSMYYLKAKFHFNKDQFADLMIIVGASGSISQLLFMPVLVPALKEERLLSIGLFFGCAHMFLLCVAWSSWVPYMAAIFALFSIFPSSCMRSIVSKQVASYEQGKAQGIISSICSLANVISPLAFSPLTDWFLSERAPFNFPGFSIMCAGFAMTIAFIQSLMIRAATPISVMGSP", "length": 438, "header": "tr|F4K1G9-1|F4K1G9_ARATH Isoform 1 of Major facilitator superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4K1G9-1" }, "locus": { "chromosome": "5", "start_pos": 16865770, "end_pos": 16870887, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G42210.1", "url": "https://www.ensemblgenomes.org/id/AT5G42210.1" }, { "database": "Ensembl Peptide", "id": "AT5G42210.1", "url": "https://www.ensemblgenomes.org/id/AT5G42210.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BEX6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEX6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BEX6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEX6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G42210", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G42210", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P70187-1", "protein_name": "Solute carrier family 71 member 1", "gene_name": "Slc71a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTQGKKKKRAANRSIMLAKKIIIKDGGTPQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQDSIVLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELKELPITGTDLGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVALFIPEHTNLSLRSSSWRKHCGSHSHPHSTQAPGEAKEPLLQDTNV", "length": 490 }, "evidence": [ { "id": "F4K1G9", "url": "https://omabrowser.org/oma/group/F4K1G9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96MC6-1", "protein_name": "Solute carrier family 71 member 1", "gene_name": "SLC71A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTQGKKKKRAANRSIMLAKKIIIKDGGTPQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQDSIVLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELKELPITGTDLGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVALFIPEHTNLSLRSSSWRKHCGSHSHPHNTQAPGEAKEPLLQDTNV", "length": 490 }, "evidence": [ { "id": "F4K1G9", "url": "https://omabrowser.org/oma/group/F4K1G9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4K1G9", "url": "https://www.uniprot.org/uniprotkb/F4K1G9" } ], "pmid": "" } ] }, { "name": 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"https://www.uniprot.org/uniprotkb/F4K1G9" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 431, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 161, "end_pos": 163 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"evidence": [ { "id": "F4JYI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JYI4/entry#names_and_taxonomy" } ] }, { "name": "3.2.2.6", "type": "synonym", "evidence": [ { "id": "F4JYI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JYI4/entry#names_and_taxonomy" } ] }, { "name": "Disease resistance protein (TIR-NBS-LRR class) family", "type": "synonym", "evidence": [ { "id": "NP_001154757", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154757" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JYI4", "url": "https://www.uniprot.org/uniprotkb/F4JYI4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MUF8.2", "url": 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"https://www.ebi.ac.uk/interpro/entry/IPR011713", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058546", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058546", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G41740", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41740", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NGTRICH", "url": "https://omabrowser.org/oma/group/NGTRICH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017:SF291", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017:SF291", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07725", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07725", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23286", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23286", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001154757", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154757", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16301", "url": "https://www.rhea-db.org/rhea/16301", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT5G41740", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G41740", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BEY3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BEY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JYI4", "url": "https://www.uniprot.org/uniprotkb/F4JYI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JYI4-1", "url": "https://www.uniprot.org/uniprotkb/F4JYI4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JYI5", "url": "https://www.uniprot.org/uniprotkb/F4JYI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JYI5-1", "url": "https://www.uniprot.org/uniprotkb/F4JYI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSSSSSSSSHIRRHHVFSRFHGPDVRKGFLSHLHSLFASKGITTFNDQNIERGQTIGPELIQGIKEARVSIVVLSKNYASSSWCLDELVEILKCKEALGQIVMTSGVFGKAFEKTCQGKNEEVKIRWRNALAHVATIAGEHSLNWDNEAKMIQKIATDVSDKLNLTPSRDFEGMVGMEAHLKRLNSLLCLESDEVKMIGIWGPAGIGKTTIARALFDDRLSSSFQHKCFMGNLKGSIKGVADHDSKLRLQKQLLSKIFKEENMKIHHLGAIRERLHDQRVLIILDDVDDLKQLEVLAKEISWFGSGSRIIGTTEDKKILKAHGIHNIYRVDFPSKKDALEILCLSAFKQSSIPDGFEELANKVAKLCSNLPLGLCVVGASLRGEGNQEWERLLSRIESSLDRDIDDILRIGYDRLLTNDKSLFLHIACFFNYAKVDNVTALLADSNLDVGNGFNTLADRSLVRISTYDDGISVLSDSNLDIVLEQSKEPGKREFIIEPEEIRDVLTNETGTGSVIGISFDTSNIGEVSVSKDAFEGMRNLRFLRIYRLLGGEVTLQIPEDMDYIPRLRLLYWDRYPRKSLPRRFKPERLVELHMPRSNLELLWGGIEPLPNLKIINLNRSYRLKEIPNLSKATNLERLTLESCLSLVELPSSISNLHKLEILDVKFCSMLQVIPTNINLASLERLDVSGCSRLRTFPDISSNIKTLIFGNIKIEDVPPSVGCWSRLDQLHISSRSLKRLMHVPPCITLLSLRGSGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCVSLKRVRFSFHNPMHTLDFNNCLKLDEEAKRGIIQRSVSRYICLPCKKIPEEFTHKATGKSITIPLAPGTLSASSRFKASILILPVESYETEGISCSIRTKGGVEVHCCELPYHFLRVRSEHLFIFHGDLFPQGNKYHEVDVTMSEITFEFSHTKIGDKIIECGVQIMTEGAEGDSSRELEVLKLRVAAAQLGDLLGNLNLEATTITTQMEMEMETMKQKVPSSLKMKTSKPANVGFMSWLRKLDGDGEYEPEAVKLCKCLPINQHKRYIALFFSRREFFGNNLKRWIYLSLQSDVRIDSGRRLGISTQHLILQ", "length": 1114, "header": "tr|F4JYI4-1|F4JYI4_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=MUF8.2 PE=4 SV=1 CANONICAL=F4JYI4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BEY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEY3/entry", "sequence": { "sequence": "MIQKIATDVSDKLNLTPSRDFEGMVGMEAHLKRLNSLLCLESDEVKMIGIWGPAGIGKTTIARALFDDRLSSSFQHKCFMGNLKGSIKGVADHDSKLRLQKQLLSKIFKEENMKIHHLGAIRERLHDQRVLIILDDVDDLKQLEVLAKEISWFGSGSRIIGTTEDKKILKAHGIHNIYRVDFPSKKDALEILCLSAFKQSSIPDGFEELANKVAKLCSNLPLGLCVVGASLRGEGNQEWERLLSRIESSLDRDIDDILRIGYDRLLTNDKSLFLHIACFFNYAKVDNVTALLADSNLDVGNGFNTLADRSLVRISTYDDGISVLSDSNLDIVLEQSKEPGKREFIIEPEEIRDVLTNETGTGSVIGISFDTSNIGEVSVSKDAFEGMRNLRFLRIYRLLGGEVTLQIPEDMDYIPRLRLLYWDRYPRKSLPRRFKPERLVELHMPRSNLELLWGGIEPLPNLKIINLNRSYRLKEIPNLSKATNLERLTLESCLSLVELPSSISNLHKLEILDVKFCSMLQVIPTNINLASLERLDVSGCSRLRTFPDISSNIKTLIFGNIKIEDVPPSVGCWSRLDQLHISSRSLKRLMHVPPCITLLSLRGSGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCVSLKRVRFSFHNPMHTLDFNNCLKLDEEAKRGIIQRSVSRYICLPCKKIPEEFTHKATGKSITIPLAPGTLSASSRFKASILILPVESYETEGISCSIRTKGGVEVHCCELPYHFLRVRSEHLFIFHGDLFPQGNKYHEVDVTMSEITFEFSHTKIGDKIIECGVQIMTEGAEGDSSRELEVLKLRVAAAQLGDLLGNLNLEATTITTQMEMEMETMKQKVPSSLKMKTSKPANVGFMSWLRKLGQ", "length": 894, "header": "tr|A0A1P8BEY3-1|F4JYI4_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=MUF8.2 PE=4 SV=1 CANONICAL=F4JYI4-1" }, "locus": { "chromosome": "5", "start_pos": 16688626, "end_pos": 16693119, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G41740.3", "url": "https://www.ensemblgenomes.org/id/AT5G41740.3" }, { "database": "Ensembl Peptide", "id": "AT5G41740.3", "url": "https://www.ensemblgenomes.org/id/AT5G41740.3" } ] } }, { "isoform_ac": "F4JYI4-1", "url": "https://www.uniprot.org/uniprotkb/F4JYI4/entry", "sequence": { "sequence": "MASSSSSSSSSHIRRHHVFSRFHGPDVRKGFLSHLHSLFASKGITTFNDQNIERGQTIGPELIQGIKEARVSIVVLSKNYASSSWCLDELVEILKCKEALGQIVMTSGVFGKAFEKTCQGKNEEVKIRWRNALAHVATIAGEHSLNWDNEAKMIQKIATDVSDKLNLTPSRDFEGMVGMEAHLKRLNSLLCLESDEVKMIGIWGPAGIGKTTIARALFDDRLSSSFQHKCFMGNLKGSIKGVADHDSKLRLQKQLLSKIFKEENMKIHHLGAIRERLHDQRVLIILDDVDDLKQLEVLAKEISWFGSGSRIIGTTEDKKILKAHGIHNIYRVDFPSKKDALEILCLSAFKQSSIPDGFEELANKVAKLCSNLPLGLCVVGASLRGEGNQEWERLLSRIESSLDRDIDDILRIGYDRLLTNDKSLFLHIACFFNYAKVDNVTALLADSNLDVGNGFNTLADRSLVRISTYDDGISVLSDSNLDIVLEQSKEPGKREFIIEPEEIRDVLTNETGTGSVIGISFDTSNIGEVSVSKDAFEGMRNLRFLRIYRLLGGEVTLQIPEDMDYIPRLRLLYWDRYPRKSLPRRFKPERLVELHMPRSNLELLWGGIEPLPNLKIINLNRSYRLKEIPNLSKATNLERLTLESCLSLVELPSSISNLHKLEILDVKFCSMLQVIPTNINLASLERLDVSGCSRLRTFPDISSNIKTLIFGNIKIEDVPPSVGCWSRLDQLHISSRSLKRLMHVPPCITLLSLRGSGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCVSLKRVRFSFHNPMHTLDFNNCLKLDEEAKRGIIQRSVSRYICLPCKKIPEEFTHKATGKSITIPLAPGTLSASSRFKASILILPVESYETEGISCSIRTKGGVEVHCCELPYHFLRVRSEHLFIFHGDLFPQGNKYHEVDVTMSEITFEFSHTKIGDKIIECGVQIMTEGAEGDSSRELEVLKLRVAAAQLGDLLGNLNLEATTITTQMEMEMETMKQKVPSSLKMKTSKPANVGFMSWLRKLDGDGEYEPEAVKLCKCLPINQHKRYIALFFSRREFFGNNLKRWIYLSLQSDVRIDSGRRLGISTQHLILQ", "length": 1114, "header": "tr|F4JYI4-1|F4JYI4_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=MUF8.2 PE=4 SV=1 CANONICAL=F4JYI4-1" }, "locus": { "chromosome": "5", "start_pos": 16688626, "end_pos": 16693119, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G41740.2", "url": "https://www.ensemblgenomes.org/id/AT5G41740.2" }, { "database": "Ensembl Peptide", "id": "AT5G41740.2", "url": "https://www.ensemblgenomes.org/id/AT5G41740.2" } ] } }, { "isoform_ac": "F4JYI5-1", "url": "https://www.uniprot.org/uniprotkb/F4JYI5/entry", "sequence": { "sequence": "MASSSSSSSSSHIRRHHVFSRFHGPDVRKGFLSHLHSLFASKGITTFNDQNIERGQTIGPELIQGIKEARVSIVVLSKNYASSSWCLDELVEILKCKEALGQIVMTSGVFGKAFEKTCQGKNEEVKIRWRNALAHVATIAGEHSLNWDNEAKMIQKIATDVSDKLNLTPSRDFEGMVGMEAHLKRLNSLLCLESDEVKMIGIWGPAGIGKTTIARALFDDRLSSSFQHKCFMGNLKGSIKGVADHDSKLRLQKQLLSKIFKEENMKIHHLGAIRERLHDQRVLIILDDVDDLKQLEVLAKEISWFGSGSRIIGTTEDKKILKAHGIHNIYRVDFPSKKDALEILCLSAFKQSSIPDGFEELANKVAKLCSNLPLGLCVVGASLRGEGNQEWERLLSRIESSLDRDIDDILRIGYDRLLTNDKSLFLHIACFFNYAKVDNVTALLADSNLDVGNGFNTLADRSLVRISTYDDGISVLSDSNLDIVLEQSKEPGKREFIIEPEEIRDVLTNETGTGSVIGISFDTSNIGEVSVSKDAFEGMRNLRFLRIYRLLGGEVTLQIPEDMDYIPRLRLLYWDRYPRKSLPRRFKPERLVELHMPRSNLELLWGGIEPLPNLKIINLNRSYRLKEIPNLSKATNLERLTLESCLSLVELPSSISNLHKLEILDVKFCSMLQVIPTNINLASLERLDVSGCSRLRTFPDISSNIKTLIFGNIKIEDVPPSVGCWSRLDQLHISSRSLKRLMHVPPCITLLSLRGSGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCVSLKRVRFSFHNPMHTLDFNNCLKLDEEAKRGIIQRSVSRYICLPCKKIPEEFTHKATGKSITIPLAPGTLSASSRFKASILILPVESYETEGISCSIRTKGGVEVHCCELPYHFLRVRSEHLFIFHGDLFPQGNKYHEVDVTMSEITFEFSHTKIGDKIIECGVQIMTEGAEGDSSRELEVLKLRVAAAQLGDLLGNLNLEATTITTQMEMEMETMKQKVPSSLKMKTSKPANVGFMSWLRKLGQ", "length": 1046, "header": "tr|F4JYI5-1|F4JYI5_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=MUF8.2 PE=4 SV=1 CANONICAL=F4JYI4-1" }, "locus": { "chromosome": "5", "start_pos": 16688626, "end_pos": 16693119, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G41740.1", "url": "https://www.ensemblgenomes.org/id/AT5G41740.1" }, { "database": "Ensembl Peptide", "id": "AT5G41740.1", "url": "https://www.ensemblgenomes.org/id/AT5G41740.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 396, "end_pos": 396, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8BEY3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8BEY3" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser396" }, { "start_pos": 401, "end_pos": 401, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8BEY3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8BEY3" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser401" }, { "start_pos": 693, "end_pos": 693, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8BEY3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8BEY3" } ], "site_lbl": "Ser693" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BEY3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEY3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BEY3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEY3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G41740", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41740", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "F4JYI4", "url": "https://www.uniprot.org/uniprotkb/F4JYI4" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F4JYI4", "url": "https://www.uniprot.org/uniprotkb/F4JYI4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K4W6-1", "uniprot_ac": "F4K4W6", "uniprot_id": "F4K4W6_ARATH", "mass": { "chemical_mass": 48834.0, "monoisotopic_mass": 48834.0 }, "refseq": { "ac": "NP_001190546", "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190546" }, "gene_names": [ { "name": "MTE17.27", "type": "recommended", "evidence": [ { "id": "F4K4W6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K4W6" } ] }, { "name": "MTE17.27", "type": "synonym", "evidence": [ { "id": "NP_001190546", "database": "RefSeq", "url": 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"glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MTE17.27", "url": "https://www.uniprot.org/uniprotkb/F4K4W6", "locus": {} } ], "crossref": [ { "id": "AT5G55550", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G55550", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd12325", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12325", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12330", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12330", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "835649", "url": "https://www.ncbi.nlm.nih.gov/gene/835649", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G55550", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G55550", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GDYERSH", "url": "https://omabrowser.org/oma/group/GDYERSH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48032", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48032", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48032:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48032:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001190546", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190546", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G55550", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G55550", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BF26", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BF26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BF26-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BF26-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BF50", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BF50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BF50-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BF50-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4W6", "url": "https://www.uniprot.org/uniprotkb/F4K4W6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4W6-1", "url": "https://www.uniprot.org/uniprotkb/F4K4W6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVGRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPNRYTSPIGHNRTESPYNSNNRDLWGNRTDTAGPGWNLNVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGTSSGLSSSPFNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPETYNGSYNVGNRQTNRGIAA", "length": 448, "header": "tr|F4K4W6-1|F4K4W6_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN=MTE17.27 PE=1 SV=1 CANONICAL=F4K4W6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BF26-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BF26/entry", "sequence": { "sequence": "MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVCDFNHFSIFQQNKQSSDLIATSSICVFESSLNLCFSKCKDQIYVLQVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVGRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPNRYTSPIGHNRTESPYNSNNRDLWGNRTDTAGPGWNLNVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGTSSGLSSSPFNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPETYNGSYNVGNRQTNRGNKKIHLNKTCNLDTF", "length": 507, "header": "tr|A0A1P8BF26-1|F4K4W6_ARATH Computationally mapped isoform of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN=MTE17.27 PE=1 SV=1 CANONICAL=F4K4W6-1" }, "locus": { "chromosome": "5", "start_pos": 22502064, "end_pos": 22504064, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G55550.10", "url": "https://www.ensemblgenomes.org/id/AT5G55550.10" }, { "database": "Ensembl Peptide", "id": "AT5G55550.10", "url": "https://www.ensemblgenomes.org/id/AT5G55550.10" } ] } }, { "isoform_ac": "A0A1P8BF50-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BF50/entry", "sequence": { "sequence": "MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVCDFNHFSIFQQNKQSSDLIATSSICVFESSLNLCFSKCKDQIYVLQVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVGRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPNRYTSPIGHNRTESPYNSNNRDLWGNRTDTAGPGWNLNVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGTSSGLSSSPFNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPETYNGSYNVGNRQTNRGIAA", "length": 495, "header": "tr|A0A1P8BF50-1|F4K4W6_ARATH Computationally mapped isoform of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN=MTE17.27 PE=1 SV=1 CANONICAL=F4K4W6-1" }, "locus": { "chromosome": "5", "start_pos": 22501916, "end_pos": 22504100, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G55550.8", "url": "https://www.ensemblgenomes.org/id/AT5G55550.8" }, { "database": "Ensembl Peptide", "id": "AT5G55550.8", "url": "https://www.ensemblgenomes.org/id/AT5G55550.8" } ] } }, { "isoform_ac": "F4K4W6-1", "url": "https://www.uniprot.org/uniprotkb/F4K4W6/entry", "sequence": { "sequence": "MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVGRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPNRYTSPIGHNRTESPYNSNNRDLWGNRTDTAGPGWNLNVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGTSSGLSSSPFNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPETYNGSYNVGNRQTNRGIAA", "length": 448, "header": "tr|F4K4W6-1|F4K4W6_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN=MTE17.27 PE=1 SV=1 CANONICAL=F4K4W6-1" }, "locus": { "chromosome": "5", "start_pos": 22501535, "end_pos": 22504144, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G55550.1", "url": "https://www.ensemblgenomes.org/id/AT5G55550.1" }, { "database": "Ensembl Peptide", "id": "AT5G55550.1", "url": "https://www.ensemblgenomes.org/id/AT5G55550.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4K4W6", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=F4K4W6" } ], "filter_code": "000000000000000000000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_reported_with_glycan" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BF26", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BF26" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BF26", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BF26" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "F4K4W6", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=F4K4W6" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "pathway": [ { "id": "ath:AT5G55550", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G55550", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F4K4W6", "url": "https://www.uniprot.org/uniprotkb/F4K4W6" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F4K4W6", "url": "https://www.uniprot.org/uniprotkb/F4K4W6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of translation", "id": "GO:0006417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006417", "evidence": [ { "database": "UniProtKB", "id": "F4K4W6", "url": "https://www.uniprot.org/uniprotkb/F4K4W6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4K4W6", "url": "https://www.uniprot.org/uniprotkb/F4K4W6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4K4W6", "url": "https://www.uniprot.org/uniprotkb/F4K4W6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 318, "end_pos": 320, "annotation": "n_glycosylation_sequon" }, { "start_pos": 330, "end_pos": 332, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" }, { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4K4W6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K4W6" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 82, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 302, "end_pos": 304 }, { "start_pos": 318, "end_pos": 320 }, { "start_pos": 330, "end_pos": 332 }, { "start_pos": 407, "end_pos": 409 }, { "start_pos": 432, "end_pos": 434 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"F4K5Y5", "uniprot_id": "F4K5Y5_ARATH", "mass": { "chemical_mass": 137395.0, "monoisotopic_mass": 137395.0 }, "refseq": { "ac": "NP_568624", "name": "COP1-interacting protein-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568624" }, "gene_names": [ { "name": "MNL12.14", "type": "recommended", "evidence": [ { "id": "F4K5Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K5Y5" } ] }, { "name": "MNL12.14", "type": "synonym", "evidence": [ { "id": "NP_568624", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568624" } ] }, { "name": "MNL12_14", "type": "synonym", "evidence": [ { "id": "NP_568624", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568624" }, { "id": "F4K5Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K5Y5" } ] } ], "protein_names": [ { "name": "COP1-interacting protein-like protein", "type": "synonym", "evidence": [ { "id": "NP_568624", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568624" }, { "id": "F4K5Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K5Y5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K5Y5", "url": "https://www.uniprot.org/uniprotkb/F4K5Y5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MNL12.14", "url": "https://www.uniprot.org/uniprotkb/F4K5Y5", "locus": {} } ], "crossref": [ { "id": "F4K5Y5", "url": "https://alphafold.ebi.ac.uk/entry/F4K5Y5", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G43310", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G43310", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834349", "url": "https://www.ncbi.nlm.nih.gov/gene/834349", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G43310", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G43310", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MIPVRSN", "url": "https://omabrowser.org/oma/group/MIPVRSN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31008", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31008", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31008:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31008:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_568624", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568624", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G43310", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G43310", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BFE3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BFE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFE3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5Y4", "url": "https://www.uniprot.org/uniprotkb/F4K5Y4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5Y4-1", "url": "https://www.uniprot.org/uniprotkb/F4K5Y4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5Y5", "url": "https://www.uniprot.org/uniprotkb/F4K5Y5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5Y5-1", "url": "https://www.uniprot.org/uniprotkb/F4K5Y5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5Y6", "url": "https://www.uniprot.org/uniprotkb/F4K5Y6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5Y6-1", "url": "https://www.uniprot.org/uniprotkb/F4K5Y6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSSTRLDSVAFQLTPTRTRCDLLVTANGKTEKIATGLLDPFLAHLKTAKDQLEKGGYSIILKPEASDNAAWFTKGTIERFVRFVSTPEVIERVYTLETEIIQIKEAIGIQNNSEMALTVVSILGLLNTFFVVWSEVLNGILYKQVKDDHRAKKADSAEGSRPLLQLNEEKAIVLYEPDSHPKQANRSTSSDENSKYTPLRELFFGFQCFSTKRVVKYLIGNMWNCIRAQVMKVLETRKIMLQKEQGMAFARAVAAGFEADDMIPLISFAKTFGASRLMDACVKFMDLWKKKHETGQWVEIEATEVMATQPNISTMNDSGIMFANAANMPGTPENSDAKSPTDNKRNGNQEYVQGQHRQPMYAPWPVHSPPGTFPVFQGYTMQGMPYYPGYPGASPYPSPYPSTDDSRRGSGQRKARKHHSSCSEDSESEDQERDNEKSSRRRKSGKVVIRNINYINSKKQDNSGTESDADDNHEEVARGECYNGKERATKGTEADTGDWQAFQTFLLQDADRDERSIDHMMEKEIRGKKRQGTGKYDPLAHGERESGKYQERDTADIRNGSVTRRIRGSSDSLMVHQRENGFENSSDPLNMNGFDTPRNGLDKRNMDDDSYIVTRVSSARDEAGRNKRNAIDIGSEISSCYQTDGNERKQVNYEPHDLSLIPERETEKLSAGYDPALEFGSKALKKNSQAAGGAKKLVKDPKSRLSKDAADKRKAPGPIRKGRPTKMSPLDEARARADKLRNFKADLQKMKKEKEEEDRKRIEALKIERQKRIASKSNSAVGQSQLPAQQTKKQILNKFSPGSRASKFSDSEPGSLSPLQRLPRRTTSLGSNDFQKFPKNGKLSTVSKSTGNMLTRSISPLPPAKRESIATGIRLTRSISPLPLSKRETRVSLDTQNKSVSQTRRLSEPKMGNTSAPSSSVRPRRTIASRKASDAPEIKKLSAIVNYDIAKIASLPELKIKPTKGPSNVMVKGVEKTKSSASGIEPSGNKNKSLCQNDIDETPVVEKTVVMVLPSSARSISRDQVKNEKSDVVSENSTIREGVDKEGIVETMQECGNDLVLVRLETLSDLVTETPKFLTSQSIVAKPYEAPYARVSSLEDPCTVYSDCSQAPPPSLYSNETEQETVKVLVPEKKISEASEKSQTKESASKGLRKLLKFGKKSQSSSVSEHHTESNNASFNSNEDHEPAVTAATTSEAFTLKNLISQDETPTAAAASQKSSRHFSLLSPFKNKKTVS", "length": 1237, "header": "tr|F4K5Y5-1|F4K5Y5_ARATH Isoform 1 of COP1-interacting protein-like protein OS=Arabidopsis thaliana OX=3702 GN=MNL12.14 PE=1 SV=1 CANONICAL=F4K5Y5-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BFE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFE3/entry", "sequence": { "sequence": "MKSSTRLDSVAFQLTPTRTRCDLLVTANGKTEKIATGLLDPFLAHLKTAKDQLEKGGYSIILKPEASDNAAWFTKGTIERFVRFVSTPEVIERVYTLETEIIQIKEAIGIQNNSEMALTVVKDDHRAKKADSAEGSRPLLQLNEEKAIVLYEPDSHPKQANRSTSSDENSKAQVMKVLETRKIMLQKEQGMAFARAVAAGFEADDMIPLISFAKTFGASRLMDACVKFMDLWKKKHETGQWVEIEATEVMATQPNISTMNDSGIMFANAANMPGTPENSDAKSPTDNKRNGNQEYVQGQHRQPMYAPWPVHSPPGTFPVFQGYTMQGMPYYPGYPGASPYPSPYPSTDDSRRGSGQRKARKHHSSCSEDSESEDQERDNEKSSRRRKSGKVVIRNINYINSKKQDNSGTESDADDNHEEVARGECYNGKERATKGTEADTGDWQAFQTFLLQDADRDERSIDHMMEKEIRGKKRQGTGKYDPLAHGERESGKYQERDTADIRNGSVTRRIRGSSDSLMVHQRENGFENSSDPLNMNGFDTPRNGLDKRNMDDDSYIVTRVSSARDEAGRNKRNAIDIGSEISSCYQTDGNERKQVNYEPHDLSLIPERETEKLSAGYDPALEFGSKALKKNSQAAGGAKKLVKDPKSRLSKDAADKRKAPGPIRKGRPTKMSPLDEARARADKLRNFKADLQKMKKEKEEEDRKRIEALKIERQKRIASKSNSAVGQSQLPAQQTKKQILNKFSPGSRASKFSDSEPGSLSPLQRLPRRTTSLGSNDFQKFPKNGKLSTVSKSTGNMLTRSISPLPPAKRESIATGIRLTRSISPLPLSKRETRVSLDTQNKSVSQTRRLSEPKMGNTSAPSSSVRPRRTIASRKASDAPEIKKLSAIVNYDIAKIASLPELKIKPTKGPSNVMVKGVEKTKSSASGIEPSGNKNKSLCQNDIDETPVVEKTVVMVLPSSARSISRDQVKNEKSDVVSENSTIREGVDKEGIVETMQECGNDLVLVSTLILAESILIFVSTVLMKGMVILLSG", "length": 1033, "header": "tr|A0A1P8BFE3-1|F4K5Y5_ARATH Computationally mapped isoform of COP1-interacting protein-like protein OS=Arabidopsis thaliana OX=3702 GN=MNL12.14 PE=1 SV=1 CANONICAL=F4K5Y5-1" }, "locus": { "chromosome": "5", "start_pos": 17379486, "end_pos": 17385585, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G43310.5", "url": "https://www.ensemblgenomes.org/id/AT5G43310.5" }, { "database": "Ensembl Peptide", "id": "AT5G43310.5", "url": "https://www.ensemblgenomes.org/id/AT5G43310.5" } ] } }, { "isoform_ac": "F4K5Y4-1", "url": "https://www.uniprot.org/uniprotkb/F4K5Y4/entry", "sequence": { "sequence": "MKSSTRLDSVAFQLTPTRTRCDLLVTANGKTEKIATGLLDPFLAHLKTAKDQLEKGGYSIILKPEASDNAAWFTKGTIERFVRFVSTPEVIERVYTLETEIIQIKEAIGIQNNSEMALTVVKDDHRAKKADSAEGSRPLLQLNEEKAIVLYEPDSHPKQANRSTSSDENSKAQVMKVLETRKIMLQKEQGMAFARAVAAGFEADDMIPLISFAKTFGASRLMDACVKFMDLWKKKHETGQWVEIEATEVMATQPNISTMNDSGIMFANAANMPGTPENSDAKSPTDNKRNGNQEYVQGQHRQPMYAPWPVHSPPGTFPVFQGYTMQGMPYYPGYPGASPYPSPYPSTDDSRRGSGQRKARKHHSSCSEDSESEDQERDNEKSSRRRKSGKVVIRNINYINSKKQDNSGTESDADDNHEEVARGECYNGKERATKGTEADTGDWQAFQTFLLQDADRDERSIDHMMEKEIRGKKRQGTGKYDPLAHGERESGKYQERDTADIRNGSVTRRIRGSSDSLMVHQRENGFENSSDPLNMNGFDTPRNGLDKRNMDDDSYIVTRVSSARDEAGRNKRNAIDIGSEISSCYQTDGNERKQVNYEPHDLSLIPERETEKLSAGYDPALEFGSKALKKNSQAAGGAKKLVKDPKSRLSKDAADKRKAPGPIRKGRPTKMSPLDEARARADKLRNFKADLQKMKKEKEEEDRKRIEALKIERQKRIASKSNSAVGQSQLPAQQTKKQILNKFSPGSRASKFSDSEPGSLSPLQRLPRRTTSLGSNDFQKFPKNGKLSTVSKSTGNMLTRSISPLPPAKRESIATGIRLTRSISPLPLSKRETRVSLDTQNKSVSQTRRLSEPKMGNTSAPSSSVRPRRTIASRKASDAPEIKKLSAIVNYDIAKIASLPELKIKPTKGPSNVMVKGVEKTKSSASGIEPSGNKNKSLCQNDIDETPVVEKTVVMVLPSSARSISRDQVKNEKSDVVSENSTIREGVDKEGIVETMQECGNDLVLVRLETLSDLVTETPKFLTSQSIVAKPYEAPYARVSSLEDPCTVYSDCSQAPPPSLYSNETEQETVKVLVPEKKISEASEKSQTKESASKGLRKLLKFGKKSQSSSVSEHHTESNNASFNSNEDHEPAVTAATTSEAFTLKNLISQDETPTAAAASQKSSRHFSLLSPFKNKKTVS", "length": 1180, "header": "tr|F4K5Y4-1|F4K5Y4_ARATH Computationally mapped isoform of COP1-interacting protein-like protein OS=Arabidopsis thaliana OX=3702 GN=MNL12.14 PE=1 SV=1 CANONICAL=F4K5Y5-1" }, "locus": { "chromosome": "5", "start_pos": 17379486, "end_pos": 17385596, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G43310.2", "url": "https://www.ensemblgenomes.org/id/AT5G43310.2" }, { "database": "Ensembl Peptide", "id": "AT5G43310.2", "url": "https://www.ensemblgenomes.org/id/AT5G43310.2" } ] } }, { "isoform_ac": "F4K5Y5-1", "url": "https://www.uniprot.org/uniprotkb/F4K5Y5/entry", "sequence": { "sequence": "MKSSTRLDSVAFQLTPTRTRCDLLVTANGKTEKIATGLLDPFLAHLKTAKDQLEKGGYSIILKPEASDNAAWFTKGTIERFVRFVSTPEVIERVYTLETEIIQIKEAIGIQNNSEMALTVVSILGLLNTFFVVWSEVLNGILYKQVKDDHRAKKADSAEGSRPLLQLNEEKAIVLYEPDSHPKQANRSTSSDENSKYTPLRELFFGFQCFSTKRVVKYLIGNMWNCIRAQVMKVLETRKIMLQKEQGMAFARAVAAGFEADDMIPLISFAKTFGASRLMDACVKFMDLWKKKHETGQWVEIEATEVMATQPNISTMNDSGIMFANAANMPGTPENSDAKSPTDNKRNGNQEYVQGQHRQPMYAPWPVHSPPGTFPVFQGYTMQGMPYYPGYPGASPYPSPYPSTDDSRRGSGQRKARKHHSSCSEDSESEDQERDNEKSSRRRKSGKVVIRNINYINSKKQDNSGTESDADDNHEEVARGECYNGKERATKGTEADTGDWQAFQTFLLQDADRDERSIDHMMEKEIRGKKRQGTGKYDPLAHGERESGKYQERDTADIRNGSVTRRIRGSSDSLMVHQRENGFENSSDPLNMNGFDTPRNGLDKRNMDDDSYIVTRVSSARDEAGRNKRNAIDIGSEISSCYQTDGNERKQVNYEPHDLSLIPERETEKLSAGYDPALEFGSKALKKNSQAAGGAKKLVKDPKSRLSKDAADKRKAPGPIRKGRPTKMSPLDEARARADKLRNFKADLQKMKKEKEEEDRKRIEALKIERQKRIASKSNSAVGQSQLPAQQTKKQILNKFSPGSRASKFSDSEPGSLSPLQRLPRRTTSLGSNDFQKFPKNGKLSTVSKSTGNMLTRSISPLPPAKRESIATGIRLTRSISPLPLSKRETRVSLDTQNKSVSQTRRLSEPKMGNTSAPSSSVRPRRTIASRKASDAPEIKKLSAIVNYDIAKIASLPELKIKPTKGPSNVMVKGVEKTKSSASGIEPSGNKNKSLCQNDIDETPVVEKTVVMVLPSSARSISRDQVKNEKSDVVSENSTIREGVDKEGIVETMQECGNDLVLVRLETLSDLVTETPKFLTSQSIVAKPYEAPYARVSSLEDPCTVYSDCSQAPPPSLYSNETEQETVKVLVPEKKISEASEKSQTKESASKGLRKLLKFGKKSQSSSVSEHHTESNNASFNSNEDHEPAVTAATTSEAFTLKNLISQDETPTAAAASQKSSRHFSLLSPFKNKKTVS", "length": 1237, "header": "tr|F4K5Y5-1|F4K5Y5_ARATH Isoform 1 of COP1-interacting protein-like protein OS=Arabidopsis thaliana OX=3702 GN=MNL12.14 PE=1 SV=1 CANONICAL=F4K5Y5-1" }, "locus": { "chromosome": "5", "start_pos": 17379591, "end_pos": 17385387, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G43310.1", "url": "https://www.ensemblgenomes.org/id/AT5G43310.1" }, { "database": "Ensembl Peptide", "id": "AT5G43310.1", "url": "https://www.ensemblgenomes.org/id/AT5G43310.1" } ] } }, { "isoform_ac": "F4K5Y6-1", "url": "https://www.uniprot.org/uniprotkb/F4K5Y6/entry", "sequence": { "sequence": "MKSSTRLDSVAFQLTPTRTRCDLLVTANGKTEKIATGLLDPFLAHLKTAKDQLEKGGYSIILKPEASDNAAWFTKGTIERFVRFVSTPEVIERVYTLETEIIQIKEAIGIQNNSEMALTVVKDDHRAKKADSAEGSRPLLQLNEEKAIVLYEPDSHPKQANRSTSSDENSKAQVMKVLETRKIMLQKEQGMAFARAVAAGFEADDMIPLISFAKTFGASRLMDACVKFMDLWKKKHETGQWVEIEATEVMATQPNISTMNDSGIMFANAANMPGTPENSDAKSPTDNKRNGNQEYVQGQHRQPMYAPWPVHSPPGTFPVFQGYTMQGMPYYPGYPGASPYPSPYPSTDDSRRGSGQRKARKHHSSCSEDSESEDQERDNEKSSRRRKSGKVVIRNINYINSKKQDNSGTESDADDNHEEVARGECYNGKERATKGTEADTGDWQAFQTFLLQDADRDERSIDHMMEKEIRGKKRQGTGKYDPLAHGERESGKYQERDTADIRNGSVTRRIRGSSDSLMVHQRENGFENSSDPLNMNGFDTPRNGLDKRNMDDDSYIVTRVSSARDEAGRNKRNAIDIGSEISSCYQTDGNERKQVNYEPHDLSLIPERETEKLSAGYDPALEFGSKALKKNSQAAGGAKKLVKDPKSRLSKDAADKRKAPGPIRKGRPTKMSPLDEARARADKLRNFKADLQKMKKEKEEEDRKRIEALKIERQKRIASKSNSAVGQSQLPAQQTKKQILNKFSPGSRASKFSDSEPGSLSPLQRLPRRTTSLGSNDFQKFPKNGKLSTVSKSTGNMLTRSISPLPPAKRESIATGIRLTRSISPLPLSKRETRVSLDTQNKSVSQTRRLSEPKMGNTSAPSSSVRPRRTIASRKASDAPEIKKLSAIVNYDIAKIASLPELKIKPTKGPSNVMVKGVEKTKSSASGIEPSGNKNKSLCQNDIDETPVVEKTVVMVLPSSARSISRDQVKNEKSDVVSENSTIREGVDKEGIVETMQECGNDLVLVRLETLSDLVTETPKFLTSQSIVAKPYEAPYARVSSLEDPCTVYSDCSQAPPPSLYSNETEQETVKVLVPEKKISEASEKSQTKESASKGLRKLLKFGKKSQSSSVSEHHTESNNASFNSNEDHEPAVTAATTSEAFTLKNLISQDETPTAAAASQKCK", "length": 1164, "header": "tr|F4K5Y6-1|F4K5Y6_ARATH Computationally mapped isoform of COP1-interacting protein-like protein OS=Arabidopsis thaliana OX=3702 GN=MNL12.14 PE=1 SV=1 CANONICAL=F4K5Y5-1" }, "locus": { "chromosome": "5", "start_pos": 17379486, "end_pos": 17385564, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G43310.3", "url": "https://www.ensemblgenomes.org/id/AT5G43310.3" }, { "database": "Ensembl Peptide", "id": "AT5G43310.3", "url": "https://www.ensemblgenomes.org/id/AT5G43310.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1212, "start_aa": "Thr", "end_pos": 1212, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1212", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [ { "start_pos": 1016, "end_pos": 1016, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5Y6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5Y6" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1016" }, { "start_pos": 1017, "end_pos": 1017, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5Y6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5Y6" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1017" }, { "start_pos": 1020, "end_pos": 1020, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5Y6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5Y6" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser1020" }, { "start_pos": 1022, "end_pos": 1022, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5Y6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5Y6" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser1022" }, { "start_pos": 1035, "end_pos": 1035, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5Y6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5Y6" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1035" }, { "start_pos": 1067, "end_pos": 1067, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5Y6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5Y6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Thr1067" }, { "start_pos": 1069, "end_pos": 1069, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5Y6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5Y6" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1069" }, { "start_pos": 1073, "end_pos": 1073, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5Y6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5Y6" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr1073" }, { "start_pos": 1075, "end_pos": 1075, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5Y6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5Y6" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Thr1075" }, { "start_pos": 1080, "end_pos": 1080, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5Y6", "url": 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"tr|A0A1P8BFH4-1|Q94CL4_ARATH Computationally mapped isoform of SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q94CL4-1" }, "locus": { "chromosome": "5", "start_pos": 3971800, "end_pos": 3973644, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G12280.3", "url": "https://www.ensemblgenomes.org/id/AT5G12280.3" }, { "database": "Ensembl Peptide", "id": "AT5G12280.3", "url": "https://www.ensemblgenomes.org/id/AT5G12280.3" } ] } }, { "isoform_ac": "Q94CL4-1", "url": "https://www.uniprot.org/uniprotkb/Q94CL4/entry", "sequence": { "sequence": 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Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BFH4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFH4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q94CL4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94CL4" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K366-1", "uniprot_ac": "F4K366", "uniprot_id": "F4K366_ARATH", "mass": { "chemical_mass": 24969.0, "monoisotopic_mass": 24969.0 }, "refseq": { "ac": "NP_974910", "name": "defense protein-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974910" }, "gene_names": [], "protein_names": [ { "name": "Defense protein-like protein", "type": "synonym", "evidence": [ { "id": "F4K366", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K366/entry#names_and_taxonomy" } ] }, { "name": "defense protein-like protein", "type": "synonym", "evidence": [ { "id": "NP_974910", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974910" } ] } ], "function": [], "disease": [], 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"InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G48657", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G48657", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PF05627", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05627", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_974910", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974910", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G48657", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G48657", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BFY8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BFY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFY8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BFZ2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BFZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BG18", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BG18-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG18-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BG20", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BG20-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG20-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K365", "url": "https://www.uniprot.org/uniprotkb/F4K365", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K365-1", "url": "https://www.uniprot.org/uniprotkb/F4K365-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K366", "url": "https://www.uniprot.org/uniprotkb/F4K366", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K366-1", "url": "https://www.uniprot.org/uniprotkb/F4K366-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANRPHVPKFGDWTEDAPFTVVFEKASKSKKNMNVANPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRHERFNSRDETEFRPSPAHNERNNRVRSVPPTPETYNHQTYGGGGRSMGNPTEINRRQSRDHVPARPIRNLRGQSSERVATIPPFPGTGSNMENQSYTLIFDKVKEDRNQARSYNGTDHSTPTRPIIDQHHQPLPSSPKGCCFPPWSRKGS", "length": 219, "header": "tr|F4K366-1|F4K366_ARATH Isoform 1 of Defense protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K366-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BFY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFY8/entry", "sequence": { "sequence": "MRFLFNQNQKKRDKNRPHVPKFGDWTEDAPFTVVFEKASKSKKNMNVANPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRHERFNSRDETEFRPSPAHNERNNRVRSVPPTPETYNHQTYGGGGRSMGNPTEINRRQSRDHVPARPIRNLRGQSSERVATIPPFPGTGSNMENQSYTLIFDKVKEDRNQARSYNGTDHSTPTRPIIDQHHQPLPSSPKVDNQNIISLSFINPLFLQLTLLCVGLLFSSMEPKGKLMKMIISLFYIILFFFICFCLIFFNNIFVILMEM", "length": 289, "header": "tr|A0A1P8BFY8-1|F4K366_ARATH Computationally mapped isoform of Defense protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K366-1" }, "locus": { "chromosome": "5", "start_pos": 19733917, "end_pos": 19735489, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48657.6", "url": "https://www.ensemblgenomes.org/id/AT5G48657.6" }, { "database": "Ensembl Peptide", "id": "AT5G48657.6", "url": "https://www.ensemblgenomes.org/id/AT5G48657.6" } ] } }, { "isoform_ac": "A0A1P8BFZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFZ2/entry", "sequence": { "sequence": "MANRPHVPKFGDWTEDAPFTVVFEKASKSKKNMNVANPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRHERFNSRDETEFRPSPAHNERNNRVRSVPPTPETYNHQTYGGGGRSMGNPTEINRRQSRDHVPARPIRNLRGQSSERVATIPPFPGTGSNMENQSYTLIFDKVKEDRNQARSYNGTDHSTPTRPIIDQHHQPLPSSPKVDNQNIISLSFINPLFLQLTLLCVGLLFSSMEPKGKLMKMIISLFYIILFFFICFCLIFFNNIFVILMEM", "length": 277, "header": "tr|A0A1P8BFZ2-1|F4K366_ARATH Computationally mapped isoform of Defense protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K366-1" }, "locus": { "chromosome": "5", "start_pos": 19733882, "end_pos": 19735669, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48657.3", "url": "https://www.ensemblgenomes.org/id/AT5G48657.3" }, { "database": "Ensembl Peptide", "id": "AT5G48657.3", "url": "https://www.ensemblgenomes.org/id/AT5G48657.3" } ] } }, { "isoform_ac": "A0A1P8BG18-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG18/entry", "sequence": { "sequence": "MSRRWFTQSQERQVNDNELSTPSCLHVSYLSLYLSIISLCFRLLEAILHSGCLTFRNMANRPHVPKFGDWTEDAPFTVVFEKASKSKKNMNVANPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRHERFNSRDETEFRPSPAHNERNNRVRSVPPTPETYNHQTYGGGGRSMGNPTEINRRQSRDHVPARPIRNLRGQSSERVATIPPFPGTGSNMENQSYTLIFDKVKEDRNQARSYNGTDHSTPTRPIIDQHHQPLPSSPKGCCFPPWSRKGS", "length": 276, "header": "tr|A0A1P8BG18-1|F4K366_ARATH Computationally mapped isoform of Defense protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K366-1" }, "locus": { "chromosome": "5", "start_pos": 19733884, "end_pos": 19735726, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48657.4", "url": "https://www.ensemblgenomes.org/id/AT5G48657.4" }, { "database": "Ensembl Peptide", "id": "AT5G48657.4", "url": "https://www.ensemblgenomes.org/id/AT5G48657.4" } ] } }, { "isoform_ac": "A0A1P8BG20-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG20/entry", "sequence": { "sequence": "MRFLFNQNQKKRDKVYVSCTLRFSSKHLAKNKVSTNRPHVPKFGDWTEDAPFTVVFEKASKSKKNMNVANPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRHERFNSRDETEFRPSPAHNERNNRVRSVPPTPETYNHQTYGGGGRSMGNPTEINRRQSRDHVPARPIRNLRGQSSERVATIPPFPGTGSNMENQSYTLIFDKVKEDRNQARSYNGTDHSTPTRPIIDQHHQPLPSSPKVDNQNIISLSFINPLFLQLTLLCVGLLFSSMEPKGKLMKMIISLFYIILFFFICFCLIFFNNIFVILMEM", "length": 310, "header": "tr|A0A1P8BG20-1|F4K366_ARATH Computationally mapped isoform of Defense protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K366-1" }, "locus": { "chromosome": "5", "start_pos": 19733917, "end_pos": 19735489, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48657.5", "url": "https://www.ensemblgenomes.org/id/AT5G48657.5" }, { "database": "Ensembl Peptide", "id": "AT5G48657.5", "url": "https://www.ensemblgenomes.org/id/AT5G48657.5" } ] } }, { "isoform_ac": "F4K365-1", "url": "https://www.uniprot.org/uniprotkb/F4K365/entry", "sequence": { "sequence": "MNVANPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRHERFNSRDETEFRPSPAHNERNNRVRSVPPTPETYNHQTYGGGGRSMGNPTEINRRQSRDHVPARPIRNLRGQSSERVATIPPFPGTGSNMENQSYTLIFDKVKEDRNQARSYNGTDHSTPTRPIIDQHHQPLPSSPKVDNQNIISLSFINPLFLQLTLLCVGLLFSSMEPKGKLMKMIISLFYIILFFFICFCLIFFNNIFVILMEM", "length": 245, "header": "tr|F4K365-1|F4K365_ARATH Computationally mapped isoform of Defense protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K366-1" }, "locus": { "chromosome": "5", "start_pos": 19733917, "end_pos": 19735490, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48657.1", "url": "https://www.ensemblgenomes.org/id/AT5G48657.1" }, { "database": "Ensembl Peptide", "id": "AT5G48657.1", "url": "https://www.ensemblgenomes.org/id/AT5G48657.1" } ] } }, { "isoform_ac": "F4K366-1", "url": "https://www.uniprot.org/uniprotkb/F4K366/entry", "sequence": { "sequence": "MANRPHVPKFGDWTEDAPFTVVFEKASKSKKNMNVANPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRHERFNSRDETEFRPSPAHNERNNRVRSVPPTPETYNHQTYGGGGRSMGNPTEINRRQSRDHVPARPIRNLRGQSSERVATIPPFPGTGSNMENQSYTLIFDKVKEDRNQARSYNGTDHSTPTRPIIDQHHQPLPSSPKGCCFPPWSRKGS", "length": 219, "header": "tr|F4K366-1|F4K366_ARATH Isoform 1 of Defense protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K366-1" }, "locus": { "chromosome": "5", "start_pos": 19733882, "end_pos": 19735669, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48657.2", "url": "https://www.ensemblgenomes.org/id/AT5G48657.2" }, { "database": "Ensembl Peptide", "id": "AT5G48657.2", "url": "https://www.ensemblgenomes.org/id/AT5G48657.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 100, "start_aa": "Thr", "end_pos": 100, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr100", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [ { "start_pos": 115, "end_pos": 115, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8BG20", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8BG20" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "iPTMnet", "id": "F4K365", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K365" } ], "site_lbl": "Ser115" }, { "start_pos": 20, "end_pos": 20, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8BG20", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8BG20" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr20" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BFY8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFY8" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BFY8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFY8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G48657", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G48657", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": 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"MSSCSDEAIPGQPIVLGCGQLCLDYLVTVASFPIPDQKIRGTSFKVQGGGNTGNALTCVARLGLPCRILAKVADDSHGRYMVEELESSGVDTSFCMSAKDGASHFNYVIVDNQTNTRTCIYTPGYPPLLPDDLTESLLLDVLDGVRVLYVNGRSREAELLLAQKAHSKNIPILINAEKKRTGLDELIDLADYAICSTNFPQEWTGAPSSPSALLSMLIRLPKLKFVIMTLGEHGCVMLERCSSEVSGSEEETDIDELHESLKQSTDFTSVLPVCNSSLVTRLTGNVTGRLVIVTAEKIPSSELIDTTGAGDAFTGALLYGLCTGMALEEMLTFASRVAACCCRGLGARTSLPYRTDPNLATFLGT", "length": 365, "header": "tr|F4K7C7-1|F4K7C7_ARATH Isoform 1 of PfkB-like carbohydrate kinase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K7C7-1" }, "locus": { "chromosome": "5", "start_pos": 17667310, "end_pos": 17670292, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G43910.2", "url": "https://www.ensemblgenomes.org/id/AT5G43910.2" }, { "database": "Ensembl Peptide", "id": "AT5G43910.2", "url": "https://www.ensemblgenomes.org/id/AT5G43910.2" } ] } }, { "isoform_ac": "F4K7C8-1", "url": "https://www.uniprot.org/uniprotkb/F4K7C8/entry", "sequence": { "sequence": "MSSCSDEAIPGQPIVLGCGQLCLDYLVTVASFPIPDQKIRGTSFKVQGGGNTGNALTCVARLGLPCRILAKVADDSHGRYMVEELESSGVDTSFCMSAKDGASHFNYVIVDNQTNTRTCIYTPGYPPLLPDDLTESLLLDVLDGVRVLYVNGRSREAELLLAQKAHSKNIPILINAEKKRTGLDELIDLADYAICSTNFPQEWTGAPSSPSALLSMLIRLPKLKFVIMTLGEHGCVMLERCSSEVSGSEEETDIDELHESLKQSTDFTSVLPVCNSSGDWL", "length": 281, "header": "tr|F4K7C8-1|F4K7C8_ARATH Computationally mapped isoform of PfkB-like carbohydrate kinase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K7C7-1" }, "locus": { "chromosome": "5", "start_pos": 17667407, "end_pos": 17670292, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G43910.3", "url": "https://www.ensemblgenomes.org/id/AT5G43910.3" }, { "database": "Ensembl Peptide", "id": "AT5G43910.3", "url": "https://www.ensemblgenomes.org/id/AT5G43910.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis 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D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BG16", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG16" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BG16", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG16" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G43910", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G43910", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "F4K7C7", "url": "https://www.uniprot.org/uniprotkb/F4K7C7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4K7C7", "url": 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Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A1P8BGF9", "url": "https://www.orthodb.org/?gene=A0A1P8BGF9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8BGG6", "url": "https://www.orthodb.org/?gene=A0A1P8BGG6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8BGH5", "url": "https://www.orthodb.org/?gene=A0A1P8BGH5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4K940", "url": "https://www.orthodb.org/?gene=F4K940", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FJS8", "url": "https://www.orthodb.org/?gene=Q9FJS8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36810", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36810", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36810:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36810:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001332284", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001332284", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G56850", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G56850", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BGF9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGF9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGG6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGG6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGH5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K940", "url": "https://www.uniprot.org/uniprotkb/F4K940", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K940-1", "url": "https://www.uniprot.org/uniprotkb/F4K940-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FJS8", "url": "https://www.uniprot.org/uniprotkb/Q9FJS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FJS8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FJS8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGTIQVSVLGLIDVQTSSPGSSNTSIKVAMGKLEYQTSDSGDYIFPVTRLRENLIVTLLDVNGNQILQKEIETRMIIESGFLEEKLSFNGYGNVQLKMQFVLSEEDRNRIRFLRQSALRKKHEELVNGSSFTKSKSIASDLSSLSSMQSRDIVAVASSKTNLGLSQETKLKTNADRDPVSSNLIMWKPEVKDSVEKTNIQLSSSDVSSSKKVPEVKKLESVSLVKQEDKGLNKPSKKLIEAESVLLVKQEDKGLSKPRKKFTEAKTPESVSLVKQEETGLSKPERKPKRKSMRRSMSDSNLNNVRKMISNFEVKVTQDTKIRTAKIQTDSCKDAEEKTKAQPPAESTVNLEKSEERKIISFNNMEKSVCSDNTDRCDDLVIVSRDERTMDIEDKSLEHSTRRSDLLSTQRRSLVVEVRDDEKKQNKSVWLKDSQLENARGSRLWIFPDEAKDLCCETDLGTRHLDLDLAEANLLQKRIDESTRENIGERGSRCINIAKINSNNKWTNIERSKKQKSENSAESESSGRPVGQVMRALIVVGFAGLVFLTRQ", "length": 551, "header": "tr|F4K940-1|F4K940_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MIK19.5 PE=1 SV=1 CANONICAL=F4K940-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BGF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGF9/entry", "sequence": { "sequence": "MPGTIQVSVLGLIDVQTSSPGSSNTSIKVAMGKLEYQTSDSGDYIFPVTRLRENLIVTLLDVNGNQILQKEIETRMIIESGFLEEKLSFNGYGNVQLKMQFVLSEEDRNRIRFLRQSALRKKHEELVNGSSFTKSKSIASDLSSLSSMQSRDIVAVASSKTNLGLSQETKLKTNADRDPVSSNLIMWKPEVKDSVEKTNIQLSSSDVSSSKKVPEVKKLESVSLVKQEDKGLNKPSKKLIEAESVLLVKQEDKGLSKPRKKFTEAKTPESVSLVKQEETGLSKPERKPKRKSMRRSMSDSNLNNVRKMISNFEVKVTQDTKIRTAKIQTDSCKDAEEKTKAQPPAESTVNLEKSEERKIISFNNMEKSVCSDNTDRCDDLVIVSRDERTMDIEDKSLEHSTRRSDLLSTQRRSLVVEVRDDEKKQNKSVWLKDSQLENARGSRLWIFPDEAKDLCCETDLGTRHLDLDLAEANLLQKRIDESTRENIGERGSRCINIAKINSNNKWTNIERSKKQKSENSAESESSGRPVGQVSLSTDMFRAY", "length": 543, "header": "tr|A0A1P8BGF9-1|F4K940_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MIK19.5 PE=1 SV=1 CANONICAL=F4K940-1" }, "locus": { "chromosome": "5", "start_pos": 22985115, "end_pos": 22988092, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56850.3", "url": "https://www.ensemblgenomes.org/id/AT5G56850.3" }, { "database": "Ensembl Peptide", "id": "AT5G56850.3", "url": "https://www.ensemblgenomes.org/id/AT5G56850.3" } ] } }, { "isoform_ac": "A0A1P8BGG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGG6/entry", "sequence": { "sequence": "MIIESGFLEEKLSFNGYGNVQLKMQFVLSEEDRNRIRFLRQSALRKKHEELVNGSSFTKSKSIASDLSSLSSMQSRDIVAVASSKTNLGLSQETKLKTNADRDPVSSNLIMWKPEVKDSVEKTNIQLSSSDVSSSKKVPEVKKLESVSLVKQEDKGLNKPSKKLIEAESVLLVKQEDKGLSKPRKKFTEAKTPESVSLVKQEETGLSKPERKPKRKSMRRSMSDSNLNNVRKMISNFEVKVTQDTKIRTAKIQTDSCKDAEEKTKAQPPAESTVNLEKSEERKIISFNNMEKSVCSDNTDRCDDLVIVSRDERTMDIEDKSLEHSTRRSDLLSTQRRSLVVEVRDDEKKQNKSVWLKDSQLENARGSRLWIFPDEAKDLCCETDLGTRHLDLDLAEANLLQKRIDESTRENIGERGSRCINIAKINSNNKWTNIERSKKQKSENSAESESSGRPVGQVMRALIVVGFAGLVFLTRQ", "length": 476, "header": "tr|A0A1P8BGG6-1|F4K940_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MIK19.5 PE=1 SV=1 CANONICAL=F4K940-1" }, "locus": { "chromosome": "5", "start_pos": 22985193, "end_pos": 22987509, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56850.6", "url": "https://www.ensemblgenomes.org/id/AT5G56850.6" }, { "database": "Ensembl Peptide", "id": "AT5G56850.6", "url": "https://www.ensemblgenomes.org/id/AT5G56850.6" } ] } }, { "isoform_ac": "A0A1P8BGH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGH5/entry", "sequence": { "sequence": "MWHSPVTRLRENLIVTLLDVNGNQILQKEIETRMIIESGFLEEKLSFNGYGNVQLKMQFVLSEEDRNRIRFLRQSALRKKHEELVNGSSFTKSKSIASDLSSLSSMQSRDIVAVASSKTNLGLSQETKLKTNADRDPVSSNLIMWKPEVKDSVEKTNIQLSSSDVSSSKKVPEVKKLESVSLVKQEDKGLNKPSKKLIEAESVLLVKQEDKGLSKPRKKFTEAKTPESVSLVKQEETGLSKPERKPKRKSMRRSMSDSNLNNVRKMISNFEVKVTQDTKIRTAKIQTDSCKDAEEKTKAQPPAESTVNLEKSEERKIISFNNMEKSVCSDNTDRCDDLVIVSRDERTMDIEDKSLEHSTRRSDLLSTQRRSLVVEVRDDEKKQNKSVWLKDSQLENARGSRLWIFPDEAKDLCCETDLGTRHLDLDLAEANLLQKRIDESTRENIGERGSRCINIAKINSNNKWTNIERSKKQKSENSAESESSGRPVGQVMRALIVVGFAGLVFLTRQ", "length": 509, "header": "tr|A0A1P8BGH5-1|F4K940_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MIK19.5 PE=1 SV=1 CANONICAL=F4K940-1" }, "locus": { "chromosome": "5", "start_pos": 22985193, "end_pos": 22987627, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56850.7", "url": "https://www.ensemblgenomes.org/id/AT5G56850.7" }, { "database": "Ensembl Peptide", "id": "AT5G56850.7", "url": "https://www.ensemblgenomes.org/id/AT5G56850.7" } ] } }, { "isoform_ac": "F4K940-1", "url": "https://www.uniprot.org/uniprotkb/F4K940/entry", "sequence": { "sequence": "MPGTIQVSVLGLIDVQTSSPGSSNTSIKVAMGKLEYQTSDSGDYIFPVTRLRENLIVTLLDVNGNQILQKEIETRMIIESGFLEEKLSFNGYGNVQLKMQFVLSEEDRNRIRFLRQSALRKKHEELVNGSSFTKSKSIASDLSSLSSMQSRDIVAVASSKTNLGLSQETKLKTNADRDPVSSNLIMWKPEVKDSVEKTNIQLSSSDVSSSKKVPEVKKLESVSLVKQEDKGLNKPSKKLIEAESVLLVKQEDKGLSKPRKKFTEAKTPESVSLVKQEETGLSKPERKPKRKSMRRSMSDSNLNNVRKMISNFEVKVTQDTKIRTAKIQTDSCKDAEEKTKAQPPAESTVNLEKSEERKIISFNNMEKSVCSDNTDRCDDLVIVSRDERTMDIEDKSLEHSTRRSDLLSTQRRSLVVEVRDDEKKQNKSVWLKDSQLENARGSRLWIFPDEAKDLCCETDLGTRHLDLDLAEANLLQKRIDESTRENIGERGSRCINIAKINSNNKWTNIERSKKQKSENSAESESSGRPVGQVMRALIVVGFAGLVFLTRQ", "length": 551, "header": "tr|F4K940-1|F4K940_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MIK19.5 PE=1 SV=1 CANONICAL=F4K940-1" }, "locus": { "chromosome": "5", "start_pos": 22985163, "end_pos": 22988110, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56850.4", "url": "https://www.ensemblgenomes.org/id/AT5G56850.4" }, { "database": "Ensembl Peptide", "id": "AT5G56850.4", "url": "https://www.ensemblgenomes.org/id/AT5G56850.4" } ] } }, { "isoform_ac": "Q9FJS8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FJS8/entry", "sequence": { "sequence": "MRDLSSLSSMQSRDIVAVASSKTNLGLSQETKLKTNADRDPVSSNLIMWKPEVKDSVEKTNIQLSSSDVSSSKKVPEVKKLESVSLVKQEDKGLNKPSKKLIEAESVLLVKQEDKGLSKPRKKFTEAKTPESVSLVKQEETGLSKPERKPKRKSMRRSMSDSNLNNVRKMISNFEVKVTQDTKIRTAKIQTDSCKDAEEKTKAQPPAESTVNLEKSEERKIISFNNMEKSVCSDNTDRCDDLVIVSRDERTMDIEDKSLEHSTRRSDLLSTQRRSLVVEVRDDEKKQNKSVWLKDSQLENARGSRLWIFPDEAKDLCCETDLGTRHLDLDLAEANLLQKRIDESTRENIGERGSRCINIAKINSNNKWTNIERSKKQKSENSAESESSGRPVGQVMRALIVVGFAGLVFLTRQ", "length": 413, "header": "tr|Q9FJS8-1|Q9FJS8_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MIK19.5 PE=1 SV=1 CANONICAL=F4K940-1" }, "locus": { "chromosome": "5", "start_pos": 22985163, "end_pos": 22987194, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56850.5", "url": "https://www.ensemblgenomes.org/id/AT5G56850.5" }, { "database": "Ensembl Peptide", "id": "AT5G56850.5", "url": "https://www.ensemblgenomes.org/id/AT5G56850.5" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 137, "end_pos": 137, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser137" }, { "start_pos": 140, "end_pos": 140, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser140" }, { "start_pos": 143, "end_pos": 143, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser143" }, { "start_pos": 144, "end_pos": 144, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser144" }, { "start_pos": 146, "end_pos": 146, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser146" }, { "start_pos": 147, "end_pos": 147, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser147" }, { "start_pos": 150, "end_pos": 150, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser150" }, { "start_pos": 198, "end_pos": 198, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" } ], "site_lbl": "Thr198" }, { "start_pos": 296, "end_pos": 296, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser296" }, { "start_pos": 298, "end_pos": 298, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "Q9FJS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FJS8" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser298" }, { "start_pos": 300, "end_pos": 300, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser300" }, { "start_pos": 317, "end_pos": 317, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr317" }, { "start_pos": 320, "end_pos": 320, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr320" }, { "start_pos": 413, "end_pos": 413, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ], "site_lbl": "Ser413" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl 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conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4K940", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K940" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": 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{ "database": "UniProtKB", "id": "Q9C573", "url": "https://www.uniprot.org/uniprotkb/Q9C573" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C573", "locus": {} } ], "crossref": [ { "id": "AT5G22150", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G22150", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "832276", "url": "https://www.ncbi.nlm.nih.gov/gene/832276", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G22150", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22150", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MAISQCT", "url": "https://omabrowser.org/oma/group/MAISQCT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "NP_680201", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680201", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G22150", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G22150", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BGM2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C573", "url": "https://www.uniprot.org/uniprotkb/Q9C573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C573-1", "url": "https://www.uniprot.org/uniprotkb/Q9C573-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTFQTNSYNEYLIPPYASSDMPPRRRWWSRPIVTLPPTNGRRATCKETTVCCIPFCGAIFTIIAVMVYLFHFVDNAQCDAKFAIQSIAVSPSDTWHVDFLVKNPSPRFSIYYEGDETEVSLGTLSAAVLNTSHERKSPSHTAFSVDFVAEGNPNDVVSEQLDVKLRGTHKSYGENYDNAGHIDLFTNSVSVSNANANVSAADWTIGFVARSPVTGCEVSIHTLNSRLLRGSEVISKSSSSPSSGYFVTGNKTDVVFEKVVMPKVIGDVIWNARVEIMFAMNTDVRYLNGFLMAACPRIPVKFTTDQAGKVTGSLLGNVKRCDYIFQNHLA", "length": 330, "header": "tr|Q9C573-1|Q9C573_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C573-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BGM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGM2/entry", "sequence": { "sequence": "MTFQTNSYNEYLIPPYASSDMPPRRRWWSRPIVTLPPTNGRRATCKETTVCCIPFCGAIFTIIAVMVYLFHFVDNAQCDAKFAIQSIAVSPSDTWFSIYYEGDETEVSLGTLSAAVLNTSHERKSPSHTAFSVDFVAEGNPNDVVSEQLDVKLRGTHKSYGENYDNAGHIDLFTNSVSVSNANANVSAADWTIGFVARSPVTGCEVSIHTLNSRLLRGSEVISKSSSSPSSGYFVTGNKTDVVFEKVVMPKVIGDVIWNARVEIMFAMNTDVRYLNGFLMAACPRIPVKFTTDQAGKVTGSLLGNVKRCDYIFQNHLA", "length": 318, "header": "tr|A0A1P8BGM2-1|Q9C573_ARATH Computationally mapped isoform of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C573-1" }, "locus": { "chromosome": "5", "start_pos": 7342567, "end_pos": 7345956, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22150.2", "url": "https://www.ensemblgenomes.org/id/AT5G22150.2" }, { "database": "Ensembl Peptide", "id": "AT5G22150.2", "url": "https://www.ensemblgenomes.org/id/AT5G22150.2" } ] } }, { "isoform_ac": "Q9C573-1", "url": "https://www.uniprot.org/uniprotkb/Q9C573/entry", "sequence": { "sequence": "MTFQTNSYNEYLIPPYASSDMPPRRRWWSRPIVTLPPTNGRRATCKETTVCCIPFCGAIFTIIAVMVYLFHFVDNAQCDAKFAIQSIAVSPSDTWHVDFLVKNPSPRFSIYYEGDETEVSLGTLSAAVLNTSHERKSPSHTAFSVDFVAEGNPNDVVSEQLDVKLRGTHKSYGENYDNAGHIDLFTNSVSVSNANANVSAADWTIGFVARSPVTGCEVSIHTLNSRLLRGSEVISKSSSSPSSGYFVTGNKTDVVFEKVVMPKVIGDVIWNARVEIMFAMNTDVRYLNGFLMAACPRIPVKFTTDQAGKVTGSLLGNVKRCDYIFQNHLA", "length": 330, "header": "tr|Q9C573-1|Q9C573_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C573-1" }, "locus": { "chromosome": "5", "start_pos": 7342565, "end_pos": 7346061, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22150.1", "url": "https://www.ensemblgenomes.org/id/AT5G22150.1" }, { "database": "Ensembl Peptide", "id": "AT5G22150.1", "url": "https://www.ensemblgenomes.org/id/AT5G22150.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGM2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGM2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGM2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGM2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G22150", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22150", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "Q9C573", "url": "https://www.uniprot.org/uniprotkb/Q9C573" } ], "pmid": "" }, { "name": "plasmodesma", "id": "GO:0009506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009506", "evidence": [ { "database": "UniProtKB", "id": "Q9C573", "url": "https://www.uniprot.org/uniprotkb/Q9C573" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 197, "end_pos": 199, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 130, "end_pos": 132 }, { "start_pos": 197, "end_pos": 199 }, { "start_pos": 250, "end_pos": 252 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K5D9-1", "uniprot_ac": "F4K5D9", "uniprot_id": "F4K5D9_ARATH", "mass": { "chemical_mass": 93390.0, "monoisotopic_mass": 93390.0 }, "refseq": { "ac": "NP_196898", "name": "aminopeptidase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196898" }, "gene_names": [ { "name": "MAC12.10", "type": "recommended", "evidence": [ { "id": "F4K5D9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K5D9" } ] }, { "name": "MAC12.10", "type": "synonym", "evidence": [ { "id": "NP_196898", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196898" } ] }, { "name": "MAC12_10", "type": "synonym", "evidence": [ { "id": "NP_196898", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196898" }, { "id": "F4K5D9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K5D9" } ] } ], "protein_names": [ { "name": "Aminopeptidase", "type": "synonym", "evidence": [ { "id": "F4K5D9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K5D9/entry#names_and_taxonomy" } ] }, { "name": "aminopeptidase", "type": "synonym", "evidence": [ { "id": "NP_196898", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196898" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K5D9", "url": "https://www.uniprot.org/uniprotkb/F4K5D9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MAC12.10", "url": "https://www.uniprot.org/uniprotkb/F4K5D9", "locus": {} } ], "crossref": [ { "id": "F4K5D9", "url": "https://alphafold.ebi.ac.uk/entry/F4K5D9", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G13940", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G13940", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "831242", "url": "https://www.ncbi.nlm.nih.gov/gene/831242", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022227", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022227", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G13940", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G13940", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR33645", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33645", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33645:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33645:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12576", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12576", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_196898", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196898", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G13940", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G13940", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BGS3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5D9", "url": "https://www.uniprot.org/uniprotkb/F4K5D9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5D9-1", "url": "https://www.uniprot.org/uniprotkb/F4K5D9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKPTSRLDSDQQFTISMEFLKLLHTPLQAQDQRKKKKIQYQYCYVSIFNCPYLPVCISFQRLPISTYSDVFTANTLNEERCKELKMGTYLSVAAASANPHHFIHLVYKPASGSARTCTGYQDVLLGLLDIFFDASLAIFNALFGLSVNFWMKISMRFLLGNWPLMSSIIVYCILCLHETAYSEIFALWANSPRRYGGLGIFFFQVFVYPLAKRLLGPVLVTHFAEALMSDDTNTSGLSIIANLSNLSLSLMLSCPSILLNVLSYRTDPSSLCVYRISYGVPRPECDSPGLSSSQVQAISNHVSKVKSDKVIDYIKREYNIKDKWEREEFLRFCQRVECTIRAWYHLHFEDLMQLYSLFEPVRGAHRLNQQNLSTREIDALEDQFLLHLFQVMEKSNFKVITNEEIQVALSAQYRLNLPIVVNEAKLDTKLLTRYFSKFPRDDLPHFADKYIIFRRGFGIDHMKAYFFLAKIDTILVRIWHFLLTITCLKRLVYGKKNDVGLSEQIDISIETEKDSLYIERIRIEKLKLSLSNLMKKITIQEPTFERIIVVYRRVSGKKESERNIYVKHFKTIPMADMEIVLPEKKNPGLTPLDWVKFLVSAAIGLVTVVSSVSLKKADIRVIAAILSTVVAYCVKTYFTFQRNLVDYQSLITRSVYDKQLDSGRGTLLHLCDEVIQQEVKEVIISFFMLIKKGCPTSKEELDMKSEAFIKEEFNESCNFDVDDAITKLEKLGLVSRDSEDKYRCVEMKEANEIMGTTTEEMVLKARQGGEYEDEDTTATEPQMNPQDKLTAKEERFQSRYDEFETLWM", "length": 809, "header": "tr|F4K5D9-1|F4K5D9_ARATH Isoform 1 of Aminopeptidase OS=Arabidopsis thaliana OX=3702 GN=MAC12.10 PE=1 SV=1 CANONICAL=F4K5D9-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BGS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGS3/entry", "sequence": { "sequence": "MKISMRFLLGNWPLMSSIIVYCILCLHETAYSEIFALWANSPRRYGGLGIFFFQVFVYPLAKRLLGPVLVTHFAEALMSDDTNTSGLSIIANLSNLSLSLMLSCPSILLNVLSYRTDPSSLCVYRISYGVPRPECDSPGLSSSQVQAISNHVSKVKSDKVIDYIKREYNIKDKWEREEFLRFCQRVECTIRAWYHLHFEDLMQLYSLFEPVRGAHRLNQQNLSTREIDALEDQFLLHLFQVMEKSNFKVITNEEIQVALSAQYRLNLPIVVNEAKLDTKLLTRYFSKFPRDDLPHFADKYIIFRRGFGIDHMKAYFFLAKIDTILVRIWHFLLTITCLKRLVYGKKNDVGLSEQIDISIETEKDSLYIERIRIEKLKLSLSNLMKKITIQEPTFERIIVVYRRVSGKKESERNIYVKHFKTIPMADMEIVLPEKKNPGLTPLDWVKFLVSAAIGLVTVVSSVSLKKADIRVIAAILSTVVAYCVKTYFTFQRNLVDYQSLITRSVYDKQLDSGRGTLLHLCDEVIQQEVKEVIISFFMLIKKGCPTSKEELDMKSEAFIKEEFNESCNFDVDDAITKLEKLGLVSRDSEDKYRCVEMKEANEIMGTTTEEMVLKARQGGEYEDEDTTATEPQMNPQDKLTAKEERFQSRYDEFETLWM", "length": 658, "header": "tr|A0A1P8BGS3-1|F4K5D9_ARATH Computationally mapped isoform of Aminopeptidase OS=Arabidopsis thaliana OX=3702 GN=MAC12.10 PE=1 SV=1 CANONICAL=F4K5D9-1" }, "locus": { "chromosome": "5", "start_pos": 4490263, "end_pos": 4494888, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G13940.2", "url": "https://www.ensemblgenomes.org/id/AT5G13940.2" }, { "database": "Ensembl Peptide", "id": "AT5G13940.2", "url": "https://www.ensemblgenomes.org/id/AT5G13940.2" } ] } }, { "isoform_ac": "F4K5D9-1", "url": "https://www.uniprot.org/uniprotkb/F4K5D9/entry", "sequence": { "sequence": "MSKPTSRLDSDQQFTISMEFLKLLHTPLQAQDQRKKKKIQYQYCYVSIFNCPYLPVCISFQRLPISTYSDVFTANTLNEERCKELKMGTYLSVAAASANPHHFIHLVYKPASGSARTCTGYQDVLLGLLDIFFDASLAIFNALFGLSVNFWMKISMRFLLGNWPLMSSIIVYCILCLHETAYSEIFALWANSPRRYGGLGIFFFQVFVYPLAKRLLGPVLVTHFAEALMSDDTNTSGLSIIANLSNLSLSLMLSCPSILLNVLSYRTDPSSLCVYRISYGVPRPECDSPGLSSSQVQAISNHVSKVKSDKVIDYIKREYNIKDKWEREEFLRFCQRVECTIRAWYHLHFEDLMQLYSLFEPVRGAHRLNQQNLSTREIDALEDQFLLHLFQVMEKSNFKVITNEEIQVALSAQYRLNLPIVVNEAKLDTKLLTRYFSKFPRDDLPHFADKYIIFRRGFGIDHMKAYFFLAKIDTILVRIWHFLLTITCLKRLVYGKKNDVGLSEQIDISIETEKDSLYIERIRIEKLKLSLSNLMKKITIQEPTFERIIVVYRRVSGKKESERNIYVKHFKTIPMADMEIVLPEKKNPGLTPLDWVKFLVSAAIGLVTVVSSVSLKKADIRVIAAILSTVVAYCVKTYFTFQRNLVDYQSLITRSVYDKQLDSGRGTLLHLCDEVIQQEVKEVIISFFMLIKKGCPTSKEELDMKSEAFIKEEFNESCNFDVDDAITKLEKLGLVSRDSEDKYRCVEMKEANEIMGTTTEEMVLKARQGGEYEDEDTTATEPQMNPQDKLTAKEERFQSRYDEFETLWM", "length": 809, "header": "tr|F4K5D9-1|F4K5D9_ARATH Isoform 1 of Aminopeptidase OS=Arabidopsis thaliana OX=3702 GN=MAC12.10 PE=1 SV=1 CANONICAL=F4K5D9-1" }, "locus": { "chromosome": "5", "start_pos": 4490263, "end_pos": 4495753, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G13940.1", "url": "https://www.ensemblgenomes.org/id/AT5G13940.1" }, { "database": "Ensembl Peptide", "id": "AT5G13940.1", "url": "https://www.ensemblgenomes.org/id/AT5G13940.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGS3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGS3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGS3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGS3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G13940", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G13940", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "aminopeptidase activity", "id": "GO:0004177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004177", "evidence": [ { "database": "UniProtKB", "id": "F4K5D9", "url": "https://www.uniprot.org/uniprotkb/F4K5D9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4K5D9", "url": "https://www.uniprot.org/uniprotkb/F4K5D9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 246, "end_pos": 248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" }, { "start_pos": 715, "end_pos": 717, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4K5D9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 809, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4K5D9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4K5D9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 234, "end_pos": 236 }, { "start_pos": 243, "end_pos": 245 }, { "start_pos": 246, "end_pos": 248 }, { "start_pos": 372, "end_pos": 374 }, { "start_pos": 715, "end_pos": 717 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K7T1-1", "uniprot_ac": "F4K7T1", "uniprot_id": "F4K7T1_ARATH", "mass": { "chemical_mass": 74208.0, "monoisotopic_mass": 74208.0 }, "refseq": { "ac": "NP_851250", "name": "P-loop containing nucleoside triphosphate hydrolases superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_851250" }, "gene_names": [ { "name": "MQB2.8", "type": "recommended", "evidence": [ { "id": "F4K7T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K7T1" } ] }, { "name": "MQB2.8", "type": "synonym", "evidence": [ { "id": "NP_851250", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_851250" } ] }, { "name": "MQB2_8", "type": "synonym", "evidence": [ { "id": "NP_851250", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_851250" }, { "id": "F4K7T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K7T1" } ] } ], "protein_names": [ { "name": "P-loop containing nucleoside triphosphate hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_851250", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_851250" }, { "id": "F4K7T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K7T1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K7T1", "url": "https://www.uniprot.org/uniprotkb/F4K7T1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MQB2.8", "url": "https://www.uniprot.org/uniprotkb/F4K7T1", "locus": {} } ], "crossref": [ { "id": "F4K7T1", "url": "https://alphafold.ebi.ac.uk/entry/F4K7T1", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G62760", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G62760", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "836397", "url": "https://www.ncbi.nlm.nih.gov/gene/836397", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G62760", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G62760", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A1P8BGU2", "url": "https://www.orthodb.org/?gene=A0A1P8BGU2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4K7S9", "url": "https://www.orthodb.org/?gene=F4K7S9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4K7T1", "url": "https://www.orthodb.org/?gene=F4K7T1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FM17", "url": "https://www.orthodb.org/?gene=Q9FM17", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13413", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13413", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13413:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13413:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_851250", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_851250", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G62760", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G62760", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BGU2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K7S9", "url": "https://www.uniprot.org/uniprotkb/F4K7S9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K7S9-1", "url": "https://www.uniprot.org/uniprotkb/F4K7S9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K7T1", "url": "https://www.uniprot.org/uniprotkb/F4K7T1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K7T1-1", "url": "https://www.uniprot.org/uniprotkb/F4K7T1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FM17", "url": "https://www.uniprot.org/uniprotkb/Q9FM17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FM17-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM17-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNNYQNYHHHHNHNHQQQWRPAPTQPNICPICTVPHFPFCPPYPPPSSFAYNPNFPPPPHLNSPRPGFDSFTGPPVRPPQNHYPPWQPHHGNQWRPVAVDVDREADRSYKRARIDTIAGGSPGYGVSESPSPRISWENERRLKMVRDHGYGLAAPSNIEMNHQYGSEFRNGGQFNGVAPLPPPPPHHPPPYGGYFSGSNGQPPLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPSSSYPQMPNASPSSAQLAPTRSKVIDVSHLLKPPHRSTRPDHFVIILRGLPGSGKSYLAKLLRDVEVENGGSAPRIHSMDDYFMTEVEKVEESDSTSLSSGRSKRPIVKTVMEYCYEPEMEEAYRSSMLKAFKRTLEDGAFSFVIVCFLELTVSCWYMSLILVDDRNLRVADFTQFWATAKRSGYEAYILEATYKDPTGCAARNVHGITVDQVQQMAEQWEEAPSLYMQLDIKSFTRWDDLKENEIQEVDMDMEDDFGLPERKSDNSTQSEEKGATEGSYKSESKWDAESGSRTEEVKELSRSKWSNVEEDETENSQSMRRNSKSLPKSSQERQRKGKSVWWGDKGGDAGFSIGAARNMNMPSLIIGPGSGYNVKSNPLSAEESRALADAIGKAKVRGIFQDQLRAERESFKAVFDKRHVRIVTKDK", "length": 661, "header": "tr|F4K7T1-1|F4K7T1_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MQB2.8 PE=1 SV=1 CANONICAL=F4K7T1-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BGU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGU2/entry", "sequence": { "sequence": "MDNNYQNYHHHHNHNHQQQWRPAPTQPNICPICTVPHFPFCPPYPPPSSFAYNPNFPPPPHLNSPRPGFDSFTGPPVRPPQNHYPPWQPHHGNQWRPVAVDVDREADRSYKRARIDTIAGGSPGYGVSESPSPRISWENERRLKMVRDHGYGLAAPSNIEMNHQYGSEFRNGGQFNGVAPLPPPPPHHPPPYGGYFSGSNGQPPLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPSSSYPQMPNASPSSAQLAPTRSKVIDVSHLLKPPHRSTRPDHFVIILRGLPGSGKSYLAKLLRDVEVENGGSAPRIHSMDDYFMTEVEKVEESDSTSLSSGRSKRPIVKTVMEYCYEPEMEEAYRSSMLKAFKRTLEDGAFSFVIGNDFLIILECRT", "length": 391, "header": "tr|A0A1P8BGU2-1|F4K7T1_ARATH Computationally mapped isoform of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MQB2.8 PE=1 SV=1 CANONICAL=F4K7T1-1" }, "locus": { "chromosome": "5", "start_pos": 25205661, "end_pos": 25209547, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G62760.5", "url": "https://www.ensemblgenomes.org/id/AT5G62760.5" }, { "database": "Ensembl Peptide", "id": "AT5G62760.5", "url": "https://www.ensemblgenomes.org/id/AT5G62760.5" } ] } }, { "isoform_ac": "F4K7S9-1", "url": "https://www.uniprot.org/uniprotkb/F4K7S9/entry", "sequence": { "sequence": "MDNNYQNYHHHHNHNHQQQWRPAPTQPNICPICTVPHFPFCPPYPPPSSFAYNPNFPPPPHLNSPRPGFDSFTGPPVRPPQNHYPPWQPHHGNQWRPVAVDVDREADRSYKRARIDTIAGGSPGYGVSESPSPRISWENERRLKMVRDHGYGLAAPSNIEMNHQYGSEFRNGGQFNGVAPLPPPPPHHPPPYGGYFSGSNGQPPLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPSSSYPQMPNASPSSAQLAPTRSKVIDVSHLLKPPHRSTRPDHFVIILRGLPGSGKSYLAKLLRDVEVENGGSAPRIHSMDDYFMTEVEKVEESDSTSLSSGRSKRPIVKTVMEYCYEPEMEEAYRSSMLKAFKRTLEDGAFSFVIVDDRNLRVADFTQFWATAKRSGYEAYILEATYKDPTGCAARNVHGITVDQVQQMAEQWEEAPSLYMQLDIKSFTRWDDLKENEIQEVDMDMEDDFGLPERKSDNSTQSEEKGSYKSESKWDAESGSRTEEVKELSRSKWSNVEEDETENSQSMRRNSKSLPKSSQERQRKGKSVWWGDKGGDAGFSIGAARNMNMPSLIIGPGSGYNVKSNPLSAEESRALADAIGKAKVRGIFQDQLRAERESFKAVFDKRHVRIVTKDK", "length": 640, "header": "tr|F4K7S9-1|F4K7S9_ARATH Computationally mapped isoform of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MQB2.8 PE=1 SV=1 CANONICAL=F4K7T1-1" }, "locus": { "chromosome": "5", "start_pos": 25204690, "end_pos": 25209571, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G62760.4", "url": "https://www.ensemblgenomes.org/id/AT5G62760.4" }, { "database": "Ensembl Peptide", "id": "AT5G62760.4", "url": "https://www.ensemblgenomes.org/id/AT5G62760.4" } ] } }, { "isoform_ac": "F4K7T1-1", "url": "https://www.uniprot.org/uniprotkb/F4K7T1/entry", "sequence": { "sequence": "MDNNYQNYHHHHNHNHQQQWRPAPTQPNICPICTVPHFPFCPPYPPPSSFAYNPNFPPPPHLNSPRPGFDSFTGPPVRPPQNHYPPWQPHHGNQWRPVAVDVDREADRSYKRARIDTIAGGSPGYGVSESPSPRISWENERRLKMVRDHGYGLAAPSNIEMNHQYGSEFRNGGQFNGVAPLPPPPPHHPPPYGGYFSGSNGQPPLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPSSSYPQMPNASPSSAQLAPTRSKVIDVSHLLKPPHRSTRPDHFVIILRGLPGSGKSYLAKLLRDVEVENGGSAPRIHSMDDYFMTEVEKVEESDSTSLSSGRSKRPIVKTVMEYCYEPEMEEAYRSSMLKAFKRTLEDGAFSFVIVCFLELTVSCWYMSLILVDDRNLRVADFTQFWATAKRSGYEAYILEATYKDPTGCAARNVHGITVDQVQQMAEQWEEAPSLYMQLDIKSFTRWDDLKENEIQEVDMDMEDDFGLPERKSDNSTQSEEKGATEGSYKSESKWDAESGSRTEEVKELSRSKWSNVEEDETENSQSMRRNSKSLPKSSQERQRKGKSVWWGDKGGDAGFSIGAARNMNMPSLIIGPGSGYNVKSNPLSAEESRALADAIGKAKVRGIFQDQLRAERESFKAVFDKRHVRIVTKDK", "length": 661, "header": "tr|F4K7T1-1|F4K7T1_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MQB2.8 PE=1 SV=1 CANONICAL=F4K7T1-1" }, "locus": { "chromosome": "5", "start_pos": 25204472, "end_pos": 25209508, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G62760.1", "url": "https://www.ensemblgenomes.org/id/AT5G62760.1" }, { "database": "Ensembl Peptide", "id": "AT5G62760.1", "url": "https://www.ensemblgenomes.org/id/AT5G62760.1" } ] } }, { "isoform_ac": "Q9FM17-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM17/entry", "sequence": { "sequence": "MDNNYQNYHHHHNHNHQQQWRPAPTQPNICPICTVPHFPFCPPYPPPSSFAYNPNFPPPPHLNSPRPGFDSFTGPPVRPPQNHYPPWQPHHGNQWRPVAVDVDREADRSYKRARIDTIAGGSPGYGVSESPSPRISWENERRLKMVRDHGYGLAAPSNIEMNHQYGSEFRNGGQFNGVAPLPPPPPHHPPPYGGYFSGSNGQPPLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPSSSYPQMPNASPSSAQLAPTRSKVIDVSHLLKPPHRSTRPDHFVIILRGLPGSGKSYLAKLLRDVEVENGGSAPRIHSMDDYFMTEVEKVEESDSTSLSSGRSKRPIVKTVMEYCYEPEMEEAYRSSMLKAFKRTLEDGAFSFVIVDDRNLRVADFTQFWATAKRSGYEAYILEATYKDPTGCAARNVHGITVDQVQQMAEQWEEAPSLYMQLDIKSFTRWDDLKENEIQEVDMDMEDDFGLPERKSDNSTQSEEKGATEGSYKSESKWDAESGSRTEEVKELSRSKWSNVEEDETENSQSMRRNSKSLPKSSQERQRKGKSVWWGDKGGDAGFSIGAARNMNMPSLIIGPGSGYNVKSNPLSAEESRALADAIGKAKVRGIFQDQLRAERESFKAVFDKRHVRIVTKDK", "length": 644, "header": "tr|Q9FM17-1|Q9FM17_ARATH Computationally mapped isoform of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MQB2.8 PE=1 SV=1 CANONICAL=F4K7T1-1" }, "locus": { "chromosome": "5", "start_pos": 25204472, "end_pos": 25209583, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G62760.3", "url": "https://www.ensemblgenomes.org/id/AT5G62760.3" }, { "database": "Ensembl Peptide", "id": "AT5G62760.3", "url": "https://www.ensemblgenomes.org/id/AT5G62760.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 25, "start_aa": "Thr", "end_pos": 25, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr25", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGU2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGU2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGU2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGU2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G62760", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G62760", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4K7T1", "url": "https://www.uniprot.org/uniprotkb/F4K7T1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4K7T1", "url": "https://www.uniprot.org/uniprotkb/F4K7T1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F4K7T1", "url": "https://www.uniprot.org/uniprotkb/F4K7T1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of telomere maintenance", "id": "GO:0032204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032204", "evidence": [ { "database": "UniProtKB", "id": "F4K7T1", "url": "https://www.uniprot.org/uniprotkb/F4K7T1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" }, { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 500, "end_pos": 502, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4K7T1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 661, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4K7T1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4K7T1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 25 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 227, "end_pos": 229 }, { "start_pos": 243, "end_pos": 245 }, { "start_pos": 500, "end_pos": 502 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K3U7-1", "uniprot_ac": "F4K3U7", "uniprot_id": "F4K3U7_ARATH", "mass": { "chemical_mass": 55945.0, "monoisotopic_mass": 55945.0 }, "refseq": { "ac": "NP_001190241", "name": "polyketide cyclase/dehydrase/lipid transport superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190241" }, "gene_names": [ { "name": "MHF15.4", "type": "recommended", "evidence": [ { "id": "F4K3U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K3U7" } ] }, { "name": "MHF15.4", "type": "synonym", "evidence": [ { "id": "NP_001190241", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190241" } ] }, { "name": "MHF15_4", "type": "synonym", "evidence": [ { "id": "NP_001190241", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190241" }, { "id": "F4K3U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K3U7" } ] } ], "protein_names": [ { "name": "Polyketide cyclase/dehydrase/lipid transport superfamily protein", "type": "synonym", "evidence": [ { "id": "F4K3U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K3U7/entry#names_and_taxonomy" } ] }, { "name": "polyketide cyclase/dehydrase/lipid transport superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_001190241", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190241" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K3U7", "url": "https://www.uniprot.org/uniprotkb/F4K3U7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MHF15.4", "url": "https://www.uniprot.org/uniprotkb/F4K3U7", "locus": {} } ], "crossref": [ { "id": "F4K3U7", "url": "https://alphafold.ebi.ac.uk/entry/F4K3U7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G06440", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G06440", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "830532", "url": "https://www.ncbi.nlm.nih.gov/gene/830532", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023393", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023393", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G06440", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G06440", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PLQECLC", "url": "https://omabrowser.org/oma/group/PLQECLC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8BGX8", "url": "https://www.orthodb.org/?gene=A0A1P8BGX8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4K3U5", "url": "https://www.orthodb.org/?gene=F4K3U5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4K3U7", "url": "https://www.orthodb.org/?gene=F4K3U7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4K3U8", "url": "https://www.orthodb.org/?gene=F4K3U8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34560", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34560", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34560:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34560:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001190241", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190241", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G06440", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G06440", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BGX8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K3U5", "url": "https://www.uniprot.org/uniprotkb/F4K3U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K3U5-1", "url": "https://www.uniprot.org/uniprotkb/F4K3U5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K3U7", "url": "https://www.uniprot.org/uniprotkb/F4K3U7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K3U7-1", "url": "https://www.uniprot.org/uniprotkb/F4K3U7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K3U8", "url": "https://www.uniprot.org/uniprotkb/F4K3U8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K3U8-1", "url": "https://www.uniprot.org/uniprotkb/F4K3U8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQKKREICGYRDKLDKTLSSPELTNHETLKSLLRNQLEECDENILDKRTDDVSKLLSKLRSVSMTDHQVSKLTNDGDWKLKHDLEDCRVMYREGLDGSPFHTLLVEGYMDGPIHECLCVSWESTLYKKWWPQYAFPPFRILKSTCLQKVGVGEQICLARFVHIENKDEVPWPLTEREMILHYFSFEYFKDGLVVILLNTISDLNSIGVSSTDIIIPESPDAVRMDLVGGFVLQKVTPQRSYFRTIGDMDIKLDLMPPSLMNFISRQLIGNGFRLYKKSVASVAKFDEDYSRALTDPLYTKIRRALYSTDEAVEEEPKLETNEVNGVTLPKHEHENNGDASVNKPVHCRRTVPEIEEEEESEESVYSEDGNEIAKTHVDMRRRFCVSPEVEQALGTLDRVIFMVRNITPVPETEELSPNRADDQAKQVSVLENIESVPQTQESSSDFSEEEKREEDTGQNQGMLNKGKNSSLQRKRKARCFAFRSWL", "length": 486, "header": "tr|F4K3U7-1|F4K3U7_ARATH Isoform 1 of Polyketide cyclase/dehydrase/lipid transport superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MHF15.4 PE=1 SV=1 CANONICAL=F4K3U7-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BGX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGX8/entry", "sequence": { "sequence": "MYREGLDGSPFHTLLVEGYMDGPIHECLCVSWESTLYKKWWPQYAFPPFRILKSTCLQKVGVGEQICLARMKVPWPLTEREMILHYFSFEYFKDGLVVILLNTISDLNSIGVSSTDIIIPESPDAVRMDLVGGFVLQKVTPQRSYFRTIGDMDIKLDLMPPSLMNFISRQLIGNGFRLYKKSVASVAKFDEDYSRALTDPLYTKIRRALYSTDEAVEEEPKLETNEVNGVTLPKHEHENNGDASVNKPVHCRRTVPEIEEEEESEESVYSEDGNEIAKTHVDMRRRFCVSPEVEQALGTLDRVIFMVRNITPVPETEELSPNRADDQAKQVSVLENIESVPQTQESSSDFSEEEKREEDTGQNQGMLNKGKNSSLQRKRKARCFAFRSWL", "length": 390, "header": "tr|A0A1P8BGX8-1|F4K3U7_ARATH Computationally mapped isoform of Polyketide cyclase/dehydrase/lipid transport superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MHF15.4 PE=1 SV=1 CANONICAL=F4K3U7-1" }, "locus": { "chromosome": "5", "start_pos": 1964479, "end_pos": 1967500, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06440.6", "url": "https://www.ensemblgenomes.org/id/AT5G06440.6" }, { "database": "Ensembl Peptide", "id": "AT5G06440.6", "url": "https://www.ensemblgenomes.org/id/AT5G06440.6" } ] } }, { "isoform_ac": "F4K3U5-1", "url": "https://www.uniprot.org/uniprotkb/F4K3U5/entry", "sequence": { "sequence": "MQKKREICGYRDKLDKTLSSPELTNHETLKSLLRNQLEECDENILDKRTDDVSKLLSKLRSVSMTDHQVSKLTNDGDWKLKHDLEDCRVMYREGLDGSPFHTLLVEGYMDGPIHECLCVSWESTLYKKWWPQYAFPPFRILKSTCLQKVGVGEQICLARMKVPWPLTEREMILHYFSFEYFKDGLVVILLNTISDLNSIGVSSTDIIIPESPDAVRMDLVGGFVLQKVTPQRSYFRTIGDMDIKLDLMPPSLMNFISRQLIGNGFRLYKKSVASVAKFDEDYSRALTDPLYTKIRRALYSTDEAVEEEPKLETNEVNGVTLPKHEHENNGDASVNKPVHCRRTVPEIEEEEESEESVYSEDGNEIAKTHVDMRRRFCVSPEVEQALGTLDRVIFMVRNITPVPETEELSPNRADDQAKQVSVLENIESVPQTQESSSDFSEEEKREEDTGQNQGMLNKGKNSSLQRKRKARCFAFRSWL", "length": 479, "header": "tr|F4K3U5-1|F4K3U5_ARATH Computationally mapped isoform of Polyketide cyclase/dehydrase/lipid transport superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MHF15.4 PE=1 SV=1 CANONICAL=F4K3U7-1" }, "locus": { "chromosome": "5", "start_pos": 1964420, "end_pos": 1967470, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06440.2", "url": "https://www.ensemblgenomes.org/id/AT5G06440.2" }, { "database": "Ensembl Peptide", "id": "AT5G06440.2", "url": "https://www.ensemblgenomes.org/id/AT5G06440.2" } ] } }, { "isoform_ac": "F4K3U7-1", "url": "https://www.uniprot.org/uniprotkb/F4K3U7/entry", "sequence": { "sequence": "MQKKREICGYRDKLDKTLSSPELTNHETLKSLLRNQLEECDENILDKRTDDVSKLLSKLRSVSMTDHQVSKLTNDGDWKLKHDLEDCRVMYREGLDGSPFHTLLVEGYMDGPIHECLCVSWESTLYKKWWPQYAFPPFRILKSTCLQKVGVGEQICLARFVHIENKDEVPWPLTEREMILHYFSFEYFKDGLVVILLNTISDLNSIGVSSTDIIIPESPDAVRMDLVGGFVLQKVTPQRSYFRTIGDMDIKLDLMPPSLMNFISRQLIGNGFRLYKKSVASVAKFDEDYSRALTDPLYTKIRRALYSTDEAVEEEPKLETNEVNGVTLPKHEHENNGDASVNKPVHCRRTVPEIEEEEESEESVYSEDGNEIAKTHVDMRRRFCVSPEVEQALGTLDRVIFMVRNITPVPETEELSPNRADDQAKQVSVLENIESVPQTQESSSDFSEEEKREEDTGQNQGMLNKGKNSSLQRKRKARCFAFRSWL", "length": 486, "header": "tr|F4K3U7-1|F4K3U7_ARATH Isoform 1 of Polyketide cyclase/dehydrase/lipid transport superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MHF15.4 PE=1 SV=1 CANONICAL=F4K3U7-1" }, "locus": { "chromosome": "5", "start_pos": 1964601, "end_pos": 1967335, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06440.4", "url": "https://www.ensemblgenomes.org/id/AT5G06440.4" }, { "database": "Ensembl Peptide", "id": "AT5G06440.4", "url": "https://www.ensemblgenomes.org/id/AT5G06440.4" } ] } }, { "isoform_ac": "F4K3U8-1", "url": "https://www.uniprot.org/uniprotkb/F4K3U8/entry", "sequence": { "sequence": "MQKKREICGYRDKLDKTLSSPELTNHETLKSLLRNQLEECDENILDKRTDDVSKLLSKLRSVSMTDHQVSKLTNDGDWKLKHDLEDCRVMYREGLDGSPFHTLLVEGYMDGPIHECLCVSWESTLYKKWWPQYAFPPFRILKSTCLQKVGVGEQICLARMKVPWPLTEREMILHYFSFEYFKDGLVVILLNTISDLNSIGVSSTDIIIPESPDAVRMDLVGGFVLQKVTPQRSYFRTIGDMDIKLDLMPPSLMNFISRQLIGNGFRLYKKVRQSGFMILFVLMSGRYLSDNMFPYLNVTVSCFRS", "length": 305, "header": "tr|F4K3U8-1|F4K3U8_ARATH Computationally mapped isoform of Polyketide cyclase/dehydrase/lipid transport superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MHF15.4 PE=1 SV=1 CANONICAL=F4K3U7-1" }, "locus": { "chromosome": "5", "start_pos": 1964479, "end_pos": 1967500, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06440.1", "url": "https://www.ensemblgenomes.org/id/AT5G06440.1" }, { "database": "Ensembl Peptide", "id": "AT5G06440.1", "url": "https://www.ensemblgenomes.org/id/AT5G06440.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 416, "end_pos": 416, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K3U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K3U5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser416" }, { "start_pos": 469, "end_pos": 469, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K3U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K3U5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser469" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGX8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGX8" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGX8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGX8" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGX8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGX8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G06440", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G06440", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4K3U7", "url": "https://www.uniprot.org/uniprotkb/F4K3U7" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4K3U7", "url": "https://www.uniprot.org/uniprotkb/F4K3U7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" }, { "start_pos": 468, "end_pos": 470, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4K3U7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 486, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4K3U7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4K3U7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 416, 469 ], "sequon_annotation_sites": [ { "start_pos": 405, "end_pos": 407 }, { "start_pos": 468, "end_pos": 470 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C589" } ] } ], "protein_names": [ { "name": "Protein AAL-toxin resistant 7", "type": "recommended", "evidence": [ { "id": "Q9C589", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C589/entry#names_and_taxonomy" } ] }, { "name": "Alternaria alternata f.sp. lycopersici toxin resistant protein 7", "type": "synonym", "evidence": [ { "id": "Q9C589", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C589/entry#names_and_taxonomy" } ] }, { "name": "hydroxyproline-rich glycoprotein family protein", "type": "synonym", "evidence": [ { "id": "NP_680186", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680186" } ] } ], "function": [ { "annotation": "Required to regulate responses to abiotic stress (drought) and to oxidative stress leading to cell death (PubMed:22710144, PubMed:31250033). Confers sensitivity to paraquat (PQ), to the catalase inhibitor aminotriazole (AT), and to the fungal Alternaria alternata f.sp. lycopersici toxin (AAL toxin) (PubMed:22710144).", "evidence": [ { "database": "UniProtKB", "id": "Q9C589", "url": "https://www.uniprot.org/uniprotkb/Q9C589#function" }, { "database": "PubMed", "id": "22710144", "url": "https://glygen.org/publication/PubMed/22710144" }, { "database": "PubMed", "id": "31250033", "url": "https://glygen.org/publication/PubMed/31250033" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C589", "url": "https://www.uniprot.org/uniprotkb/Q9C589" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ATR7", "url": "https://www.uniprot.org/uniprotkb/Q9C589", "locus": {} } ], 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T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BHB6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHB6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Oxidative stress provokes distinct transcriptional responses in the stress-tolerant atr7 and stress-sensitive loh2 Arabidopsis thaliana mutants as revealed by multi-parallel quantitative real-time PCR analysis of ROS marker and antioxidant genes.", "journal": "Plant physiology and biochemistry : PPB", "date": "2012-10", "authors": "Mehterov Nikolay, Balazadeh Salma, Hille Jacques, Toneva Valentina, Mueller-Roeber Bernd, Gechev Tsanko", "evidence": [ { "database": "UniProtKB", "id": "Q9C589", "url": "https://www.uniprot.org/uniprotkb/Q9C589" } ], "reference": [ { "type": "PubMed", "id": "22710144", "url": "https://glygen.org/publication/PubMed/22710144" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BHB6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHB6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana.", "journal": 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"https://www.ebi.ac.uk/interpro/entry/IPR032691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032817", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032817", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G27970", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G27970", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AWRLCLN", "url": "https://omabrowser.org/oma/group/AWRLCLN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34199", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34199", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34199:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34199:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12783", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12783", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16206", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16206", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16213", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16213", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G27970", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G27970", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BHC3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BHC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHC3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BHE1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BHE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHE1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BHE6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BHE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5S0", "url": "https://www.uniprot.org/uniprotkb/F4K5S0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5S0-1", "url": "https://www.uniprot.org/uniprotkb/F4K5S0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5S1", "url": "https://www.uniprot.org/uniprotkb/F4K5S1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5S1-1", "url": "https://www.uniprot.org/uniprotkb/F4K5S1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALVAALEADLRALSAEARRRYPAVKDGAEHAILKLRSSSSASDLSSNEDILRIFLMACGVRNTKLSVIGLSCLQKLISHDAVEPSSLKEILYTLKDHSEMAEENIQLKTLQTILIIFQSRLHPETEDNMVLGLSICLTLLDNNRPPSVYNTAAATFRQAVALIFDQVVSAESLPMPKFGSSSQTARTGSVTGDLSQNINNSGPLEKDVIGGRLTIRDTLSETGKLGLRLLEDLTASAAGGSAAWLHVTSLPRTFSLELIEFVLSNYISVFKILLPYEQVLRHQICSLLMTSLRTSSELEGEMVEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKATFLDLPLWHRILVLEILRGFCVEARTLRILFQNFDMKLPSRSFFTLQLKKHPKNTNVVESMVKALARVVSSIQFQETSEESLAAVAGMFSSKAKGIEWILDNDASSAAVLVASEAHAITLAIEGLLGVVFTVATLTDEAVDVGELESPRYEHLPSSDYTGKTSLLCISMVDSLWLTILDAFSLILSRSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTIVLPTDVERKSSVVQSPVSKRSEVQVDLKDVIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQEVATAVPKLTREPSRQYADFSILSSLNSQLFESSALMQVSSVKSLLSALHMLSHQSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQVVGHFLELAEHSNQNLRNMALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAVLSSLRVLYFSAQKADVRVGSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQSLRVIMSDGLPTLPEDCLHVCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKGSGFNNADSTPQQTNGEDGEKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRNSAVRTFFQILGSHGNKLSKSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHMLIHHSRNSAQKQWDETFVLVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVSLAAINCLQTAVVSHCVKGNLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQSSKMFDDKMYMQLLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREFLHYLPRVDSVLPNDEGSEVLEQKADASSETIPTTRITTNMFAEKLIPALIELLLQAPAVEKYILFPEVIQNLRRCMMTRRDNPDGSLWKVAAEGFNRLLVEDVKLCSVGGETELKISKTARIRIWKEIGDVYDIFLVGYCGRALSSNSLPAATLKANETLEIALLNGLGDIILKSTVDAPREVLERLVSTLDRCASRTCSLPVETVELMPAHCSRFSLTCLQKLFSLSSFSSETENWHSTRAEVSKISITTLMARCEFILSRFLIDENNLGNRPIPTARLEEIIFTLQELYRLSIHPEVASVLPLQPYLKNVLREDNRDTRAHLLVLFPSLCEIVLSREMRVRELVQILLRAVATELGLEKRVLNYSVCCILQYAILRDFMLVWFNKVLC", "length": 1658, "header": "tr|F4K5S0-1|F4K5S0_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K5S0-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BHC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHC3/entry", "sequence": { "sequence": "MALVAALEADLRALSAEARRRYPAVKDGAEHAILKLRSSSSASDLSSNEDILRIFLMACGVRNTKLSVIGLSCLQKLISHDAVEPSSLKEILYTLKDHSEMAEENIQLKTLQTILIIFQSRLHPETEDNMVLGLSICLTLLDNNRPPSVYNTAAATFRQAVALIFDQVVSAESLPMPKFGSSSQTARTGSVTGDLSQNINNSGPLEKDVIGGRLTIRDTLSETGKLGLRLLEDLTASAAGGSAAWLHVTSLPRTFSLELIEFVLSNYISVFKILLPYEQVLRHQICSLLMTSLRTSSELEGEMVEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKATFLDLPLWHRILVLEILRGFCVEARTLRILFQNFDMHPKNTNVVESMVKALARVVSSIQFQETSEESLAAVAGMFSSKAKGIEWILDNDASSAAVLVASEAHAITLAIEGLLGVVFTVATLTDEAVDVGELESPRYEHLPSSDYTGKTSLLCISMVDSLWLTILDAFSLILSRSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTIVLPTDVERKSSVVQSPVSKRSEVQVDLKDVIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQEVATAVPKLTREPSRQYADFSILSSLNSQLFESSALMQVSSVKSLLSALHMLSHQSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQVVGHFLELAEHSNQNLRNMALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAVLSSLRVLYFSAQKADVRVGSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQSLRVIMSDGLPTLPEDCLHVCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKGSDSTPQQTNGEDGEKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRNSAVRTFFQILGSHGNKLSKSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHMLIHHSRNSAQKQWDETFVLVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVSLAAINCLQTAVVSHCVKGNLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQSSKMFDDKMYMQLLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREFLHYLPRVDSVLPNDEGSEVLEQKADASSETIPTTRITTNMFAEKLIPALIELLLQAPAVEKYILFPEVIQNLRRCMMTRRDNPDGSLWKVAAEGFNRLLVEDVKLCSVGGETELKISKTARIRIWKEIGDVYDIFLVGYCGRALSSNSLPAATLKANETLEIALLNGLGDIILKSTVDAPREVLERLVSTLDRCASRTCSLPVETVELMPAHCSRFSLTCLQKLFSLSSFSSETENWHSTRAEVSKISITTLMARCEFILSRFLIDENNLGNRPIPTARLEEIIFTLQELYRLSIHPEVASVLPLQPYLKNVLREDNRDTRAHLLVLFPSLCEIVLSREMRVRELVQILLRAVATELGLEKVSLSS", "length": 1615, "header": "tr|A0A1P8BHC3-1|F4K5S0_ARATH Computationally mapped isoform of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K5S0-1" }, "locus": { "chromosome": "5", "start_pos": 10004428, "end_pos": 10015746, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G27970.5", "url": "https://www.ensemblgenomes.org/id/AT5G27970.5" }, { "database": "Ensembl Peptide", "id": "AT5G27970.5", "url": "https://www.ensemblgenomes.org/id/AT5G27970.5" } ] } }, { "isoform_ac": "A0A1P8BHE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHE1/entry", "sequence": { "sequence": "MALVAALEADLRALSAEARRRYPAVKDGAEHAILKLRSSSSASDLSSNEDILRIFLMACGVRNTKLSVIGLSCLQKLISHDAVEPSSLKEILYTLKDHSEMAEENIQLKTLQTILIIFQSRLHPETEDNMVLGLSICLTLLDNNRPPSVYNTAAATFRQAVALIFDQVVSAESLPMPKFGSSSQTARTGSVTGDLSQNINNSGPLEKDVIGGRLTIRDTLSETGKLGLRLLEDLTASAAGGSAAWLHVTSLPRTFSLELIEFVLSNYISVFKILLPYEQVLRHQICSLLMTSLRTSSELEGEMVEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKATFLDLPLWHRILVLEILRGFCVEARTLRILFQNFDMHPKNTNVVESMVKALARVVSSIQFQETSEESLAAVAGMFSSKAKGIEWILDNDASSAAVLVASEAHAITLAIEGLLGVVFTVATLTDEAVDVGELESPRYEHLPSSDYTGKTSLLCISMVDSLWLTILDAFSLILSRSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTIVLPTDVERKSSVVQSPVSKRSEVQVDLKDVIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQEVATAVPKLTREPSRQYADFSILSSLNSQLFESSALMQVSSVKSLLSALHMLSHQSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQVVGHFLELAEHSNQNLRNMALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAVLSSLRVLYFSAQKADVRVGSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQSLRVIMSDGLPTLPEDCLHVCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKGSGFNNADSTPQQTNGEDGEKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRNSAVRTFFQILGSHGNKLSKSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHMLIHHSRNSAQKQWDETFVLVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVSLAAINCLQTAVVSHCVKGNLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQSSKMFDDKMYMQLLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREFLHYLPRVDSVLPNDEGSEVLEQKADASSETIPTTRITTNMFAEKLIPALIELLLQAPAVEKYILFPEVIQNLRRCMMTRRDNPDGSLWKVAAEGFNRLLVEDVKLCSVGGETELKISKTARIRIWKEIGDVYDIFLVGYCGRALSSNSLPAATLKANETLEIALLNGLGDIILKSTVDAPREVLERLVSTLDRCASRTCSLPVETVELMPAHCSRFSLTCLQKLFSLSSFSSETENWHSTRAEVSKISITTLMARCEFILSRFLIDENNLGNRPIPTARLEEIIFTLQELYRLSIHPEVASVLPLQPYLKNVLREDNRDTRAHLLVLFPSLCEIVLSREMRVRELVQILLRAVATELGLEKVSLSS", "length": 1620, "header": "tr|A0A1P8BHE1-1|F4K5S0_ARATH Computationally mapped isoform of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K5S0-1" }, "locus": { "chromosome": "5", "start_pos": 10004411, "end_pos": 10015739, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G27970.4", "url": "https://www.ensemblgenomes.org/id/AT5G27970.4" }, { "database": "Ensembl Peptide", "id": "AT5G27970.4", "url": "https://www.ensemblgenomes.org/id/AT5G27970.4" } ] } }, { "isoform_ac": "A0A1P8BHE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHE6/entry", "sequence": { "sequence": "MALVAALEADLRALSAEARRRYPAVKDGAEHAILKLRSSSSASDLSSNEDILRIFLMACGVRNTKLSVIGLSCLQKLISHDAVEPSSLKEILYTLKDHSEMAEENIQLKTLQTILIIFQSRLHPETEDNMVLGLSICLTLLDNNRPPSVYNTAAATFRQAVALIFDQVVSAESLPMPKFGSSSQTARTGSVTGDLSQNINNSGPLEKDVIGGRLTIRDTLSETGKLGLRLLEDLTASAAGGSAAWLHVTSLPRTFSLELIEFVLSNYISVFKILLPYEQVLRHQICSLLMTSLRTSSELEGEMVEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKATFLDLPLWHRILVLEILRGFCVEARTLRILFQNFDMHPKNTNVVESMVKALARVVSSIQFQETSEESLAAVAGMFSSKAKGIEWILDNDASSAAVLVASEAHAITLAIEGLLGVVFTVATLTDEAVDVGELESPRYEHLPSSDYTGKTSLLCISMVDSLWLTILDAFSLILSRSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTIVLPTDVERKSSVVQSPVSKRSEVQVDLKDVIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQEVATAVPKLTREPSRQYADFSILSSLNSQLFESSALMQVSSVKSLLSALHMLSHQSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQVVGHFLELAEHSNQNLRNMALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAVLSSLRVLYFSAQKADVRVGSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQSLRVIMSDGLPTLPEDCLHVCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKGSGFNNADSTPQQTNGEDGEKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRNSAVRTFFQILGSHGNKLSKSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHMLIHHSRNSAQKQWDETFVLVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVSLAAINCLQTAVVSHCVKGNLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQSSKMFDDKMYMQLLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREFLHYLPRVDSVLPNDEGEIQQNNTGHCASSEVLEQKADASSETIPTTRITTNMFAEKLIPALIELLLQAPAVEKYILFPEVIQNLRRCMMTRRDNPDGSLWKVAAEGFNRLLVEDVKLCSVGGETELKISKTARIRIWKEIGDVYDIFLVGYCGRALSSNSLPAATLKANETLEIALLNGLGDIILKSTVDAPREVLERLVSTLDRCASRTCSLPVETVELMPAHCSRFSLTCLQKLFSLSSFSSETENWHSTRAEVSKISITTLMARCEFILSRFLIDENNLGNRPIPTARLEEIIFTLQELYRLSIHPEVASVLPLQPYLKNVLREDNRDTRAHLLVLFPSLCEIVLSREMRVRELVQILLRAVATELGLEKVSLSS", "length": 1632, "header": "tr|A0A1P8BHE6-1|F4K5S0_ARATH Computationally mapped isoform of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K5S0-1" }, "locus": { "chromosome": "5", "start_pos": 10004411, "end_pos": 10015739, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G27970.3", "url": "https://www.ensemblgenomes.org/id/AT5G27970.3" }, { "database": "Ensembl Peptide", "id": "AT5G27970.3", "url": "https://www.ensemblgenomes.org/id/AT5G27970.3" } ] } }, { "isoform_ac": "F4K5S0-1", "url": "https://www.uniprot.org/uniprotkb/F4K5S0/entry", "sequence": { "sequence": "MALVAALEADLRALSAEARRRYPAVKDGAEHAILKLRSSSSASDLSSNEDILRIFLMACGVRNTKLSVIGLSCLQKLISHDAVEPSSLKEILYTLKDHSEMAEENIQLKTLQTILIIFQSRLHPETEDNMVLGLSICLTLLDNNRPPSVYNTAAATFRQAVALIFDQVVSAESLPMPKFGSSSQTARTGSVTGDLSQNINNSGPLEKDVIGGRLTIRDTLSETGKLGLRLLEDLTASAAGGSAAWLHVTSLPRTFSLELIEFVLSNYISVFKILLPYEQVLRHQICSLLMTSLRTSSELEGEMVEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKATFLDLPLWHRILVLEILRGFCVEARTLRILFQNFDMKLPSRSFFTLQLKKHPKNTNVVESMVKALARVVSSIQFQETSEESLAAVAGMFSSKAKGIEWILDNDASSAAVLVASEAHAITLAIEGLLGVVFTVATLTDEAVDVGELESPRYEHLPSSDYTGKTSLLCISMVDSLWLTILDAFSLILSRSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTIVLPTDVERKSSVVQSPVSKRSEVQVDLKDVIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQEVATAVPKLTREPSRQYADFSILSSLNSQLFESSALMQVSSVKSLLSALHMLSHQSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQVVGHFLELAEHSNQNLRNMALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAVLSSLRVLYFSAQKADVRVGSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQSLRVIMSDGLPTLPEDCLHVCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKGSGFNNADSTPQQTNGEDGEKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRNSAVRTFFQILGSHGNKLSKSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHMLIHHSRNSAQKQWDETFVLVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVSLAAINCLQTAVVSHCVKGNLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQSSKMFDDKMYMQLLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREFLHYLPRVDSVLPNDEGSEVLEQKADASSETIPTTRITTNMFAEKLIPALIELLLQAPAVEKYILFPEVIQNLRRCMMTRRDNPDGSLWKVAAEGFNRLLVEDVKLCSVGGETELKISKTARIRIWKEIGDVYDIFLVGYCGRALSSNSLPAATLKANETLEIALLNGLGDIILKSTVDAPREVLERLVSTLDRCASRTCSLPVETVELMPAHCSRFSLTCLQKLFSLSSFSSETENWHSTRAEVSKISITTLMARCEFILSRFLIDENNLGNRPIPTARLEEIIFTLQELYRLSIHPEVASVLPLQPYLKNVLREDNRDTRAHLLVLFPSLCEIVLSREMRVRELVQILLRAVATELGLEKRVLNYSVCCILQYAILRDFMLVWFNKVLC", "length": 1658, "header": "tr|F4K5S0-1|F4K5S0_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K5S0-1" }, "locus": { "chromosome": "5", "start_pos": 10004720, "end_pos": 10015668, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G27970.2", "url": "https://www.ensemblgenomes.org/id/AT5G27970.2" }, { "database": "Ensembl Peptide", "id": "AT5G27970.2", "url": "https://www.ensemblgenomes.org/id/AT5G27970.2" } ] } }, { "isoform_ac": "F4K5S1-1", "url": "https://www.uniprot.org/uniprotkb/F4K5S1/entry", "sequence": { "sequence": "MALVAALEADLRALSAEARRRYPAVKDGAEHAILKLRSSSSASDLSSNEDILRIFLMACGVRNTKLSVIGLSCLQKLISHDAVEPSSLKEILYTLKDAKQLSDAVFPYLQHSEMAEENIQLKTLQTILIIFQSRLHPETEDNMVLGLSICLTLLDNNRPPSVYNTAAATFRQAVALIFDQVVSAESLPMPKFGSSSQTARTGSVTGDLSQNINNSGPLEKDVIGGRLTIRDTLSETGKLGLRLLEDLTASAAGGSAAWLHVTSLPRTFSLELIEFVLSNYISVFKILLPYEQVLRHQICSLLMTSLRTSSELEGEMVEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKATFLDLPLWHRILVLEILRGFCVEARTLRILFQNFDMHPKNTNVVESMVKALARVVSSIQFQETSEESLAAVAGMFSSKAKGIEWILDNDASSAAVLVASEAHAITLAIEGLLGVVFTVATLTDEAVDVGELESPRYEHLPSSDYTGKTSLLCISMVDSLWLTILDAFSLILSRSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTIVLPTDVERKSVVQSPVSKRSEVQVDLKDVIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQEVATAVPKLTREPSRQYADFSILSSLNSQLFESSALMQVSSVKSLLSALHMLSHQSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQVVGHFLELAEHSNQNLRNMALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAVLSSLRVLYFSAQKADVRVGSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQSLRVIMSDGLPTLPEDCLHVCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKGSGFNNADSTPQQTNGEDGEKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRNSAVRTFFQILGSHGNKLSKSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHMLIHHSRNSAQKQWDETFVLVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVSLAAINCLQTAVVSHCVKGNLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQSSKMFDDKMYMQLLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREFLHYLPRVDSVLPNDEGSEVLEQKADASSETIPTTRITTNMFAEKLIPALIELLLQAPAVEKYILFPEVIQNLRRCMMTRRDNPDGSLWKVAAEGFNRLLVEDVKLCSVGGETELKISKTARIRIWKEIGDVYDIFLVGYCGRALSSNSLPAATLKANETLEIALLNGLGDIILKSTVDAPREVLERLVSTLDRCASRTCSLPVETVELMPAHCSRFSLTCLQKLFSLSSSETENWHSTRAEVSKISITTLMARCEFILSRFLIDENNLGNRPIPTARLEEIIFTLQELYRLSIHPEVASVLPLQPYLKNVLREDNRDTRAHLLVLFPSLCEIVLSREMRVRELVQILLRAVATELGLEKVSLSS", "length": 1630, "header": "tr|F4K5S1-1|F4K5S1_ARATH Computationally mapped isoform of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K5S0-1" }, "locus": { "chromosome": "5", "start_pos": 10004720, "end_pos": 10015668, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G27970.1", "url": "https://www.ensemblgenomes.org/id/AT5G27970.1" }, { "database": "Ensembl Peptide", "id": "AT5G27970.1", "url": "https://www.ensemblgenomes.org/id/AT5G27970.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1494, "end_pos": 1494, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8BHC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8BHC3" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser1494" }, { "start_pos": 1513, "end_pos": 1513, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5S1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5S1" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" }, { "database": "iPTMnet", "id": "F4K5S0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5S0" } ], "site_lbl": "Ser1513" }, { "start_pos": 41, "end_pos": 41, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8BHC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8BHC3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "iPTMnet", "id": "F4K5S0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5S0" } ], "site_lbl": "Ser41" }, { "start_pos": 585, "end_pos": 585, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8BHC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8BHC3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" }, { "database": "iPTMnet", "id": "F4K5S0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5S0" } ], "site_lbl": "Ser585" }, { "start_pos": 591, "end_pos": 591, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8BHC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8BHC3" }, { "database": "iPTMnet", "id": "F4K5S0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5S0" } ], "site_lbl": "Ser591" }, { "start_pos": 604, "end_pos": 604, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5S1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5S1" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "A0A1P8BHC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8BHC3" }, { "database": "iPTMnet", "id": "F4K5S0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5S0" } ], "site_lbl": "Thr604" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BHC3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHC3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8BHC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8BHC3" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BHC3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHC3" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8BHC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8BHC3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BHC3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHC3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G27970", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G27970", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YIJ1-1", "protein_name": "Protein MON2 homolog", "gene_name": "MON2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSGTSSPEAVKKLLENMQGDLRGLSLECRKKFPPVKEAAESGIIKVKTIAARNTDILAALKENSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSEAAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERVVAEDERYKDIIEQPVAVQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPSAGNTSVTPNQTGSNASGSTGSAQTNPGVLGMGGGATVLPAFEYRGTWIPILNVTVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGELGEAETVSQSTTETTSLPALSSEHQDSQSISDQSDKELVSRAVWEEMVNACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAICKGSLPPHYALTVLNSTTAALSSKSYSIQGQNVQMISPSSESHQQVVAVGQPLALQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPGVGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEKVCQHPNSRMREWGAEALTSLIKAGLTFSHDPPLSQNQRLQLLLLNPLKELSNISHPDIRIKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRSDQGESLIRTAFQCLQLVVTDFLPTMPCTCLQIVVEVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGEIIEKELNKEEAVLQKQAEEKGVVLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSQAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSEKPDTPPAINVSVPVVVGATTATSLGRSFMRTDSIGERMGRYNGAELPVVTDEIEDLNLWWAAWNSWYRIGSESTKPPITCDKLTFIPSQPFLTALIQIFPALYQHIKTGFSMDDLQKLGIILHGAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICVGSENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRIPLSLKYSCPSESTWKLAVSSLLKVLSIGLPVARQHASSGKFDSMWPELANTFEDFLFTKSAPPDNLSIQEFQKNESIDVEVVQLISTEILPYANFIPKEFVGQIMTMLNKGSIHSQSSSFTEAEIDIRLREEFSKVCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTQPENVDANTWAQVIALYPTLVECITCSSSEVCSALKEALVPFKDFMHPPASKVQNGES", "length": 1720 }, "evidence": [ { "id": "F4K5S0", "url": "https://omabrowser.org/oma/group/F4K5S0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9T6Y7-1", "protein_name": "Protein MON2 homolog", "gene_name": "MON2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSGTNSPEAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAARNTEILAALKENSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDERHRDITDQPVLVQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPAATNQAGNNNSGGPVSAPANSGMLGIGGGVTLLPAFEYRGTWIPILTVTVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITNMIEGELGEVETECQTTTTEAVSSPTQSSEQQELQSTSDQMDKEIVSRAVWEEMVNACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAICKGSLPPHYALTVLNTTTAATLSNKSYSIQGQSVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEKVCQHPNSRMREWGAEALTSLIKAGLTFNHDPPLSQNQRLQLLLLNPLKEMSNINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCTCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVVLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSDKPETPPAVNVPAPVLLGPISGPSLNRPFVRTDSIGERLGRYSSSEPPVVTDELEDLNLWWAAWNTWYRIGSESTKPPITLDKLTFIPSQPFLTALIQIFPALYQHIKTGFNMDDLQKLGVILHRAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICVGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLDVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVSSLLKVLSIGLPVARQHASSGKFDSMWPELANTFEDFLFTKSIPPDNLSIQEFQRNESIDVEVVQLISTEILPYANFIPKEFVGQIMTMLNKGSIHSQSSSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTKPENVDGNTWAQVIALYPTLVECITCSSSEVCSALKEALVPFKDFMQPPTSKVQNGES", "length": 1721 }, "evidence": [ { "id": "F4K5S0", "url": "https://omabrowser.org/oma/group/F4K5S0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P48563-1", "protein_name": "Protein MON2", "gene_name": "MON2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAMNTGGFDSMQRQLEAELRSLSSESKRRNSTIRHASDKSIEILKRVHSFEELERHPDFALPFVLACQSRNAKMTTLAMQCLQGLSTVPSIPRSRLSEILDAFIEATHLAMEIQLKVLQVVPIFFKTYGKFIYGPLCKKLLLCCSNLLHVPNKAPVVVGTASATLQQLIDEIFDRLSIESVVDDKQYEVLISNSESIKVNVYRYDANKLFDNICSLNEISSNGAVSDEEMLLDIGDIPIDYGLEILESILKNSQKNLLECQDLQYLLRVKAIPLLLRCISSSRHFSTAVRSCRCLKLLIRKEYLSILELELEVILSLLIHGISVESNLSGWQRVLSLELFKDLSQDPEIVNTLYMDYDNYPDKKHVFKYLLKECIVLLNSPEYITFLAPSKVVEKMDSPLITTENSTVKTKFMHLLDKSNAPSINITYIISLILTICNHLCEGLNKSALESSPLEKKIEDKEREEGTGNDSTVVKVYSGLFSGLFELNKLFLYSTSLETSIFHLVVRAFQKLAHSAGVLSLKDKLRACMKLFSILITNNVTSSNQYSFNDTSKSAKNQHTRNISTSSVTTSPVESTKNPSRSIADSAQNKEMKRRLHPRNISSRQVSLLRALISLSISLGPIFDSESWRYTFLTWQWITYYIYGPSADFKESFYSEDIPPPPILTKSDVTSIESSLTKFFESTSSYSCSTFHLVLTRLILDSKNTLTLEQTNLNLNNDIGYHPLDAKDEIIPCIYNKAFFVNKIGELATYNCKKFLFGKNGKELWSLISTYMIKLISNREMDNDSLRLYTVRVFTDIIKKATNEVGNSDEQDNKVKQFGTLENLVIDSLMATINSIKQLDIGKQEIYNGTINVESDILFQLLLTLKEILNEFGELLMNSWTNIFNIINSPFEWTVEDTDFSVNEDIDDSSLFEGIVQKHKNMIQVSYDVFKLISDDFLQSLPMSVIKFVIDTLVNFVSQKRNLNISFSSISQFWLVGDYLRVRFNPETLNLSDEKRRSLSEKINNQKLIEIITSSSSHDWELYNGLWIYLLKNLINCTNDDRVEVKNGAVQTFFRIIDSHSVCFPPWDLIFLEVIEPLLTKEWSTEELENETDFINVTLQGLIKLYPEHFKDFKNNTTCAKEWSMLLDFLKRLLSSTSNNTKNAVILNYQTLLKEIITIEDVPSDILKKCCEIFTDYNITYSDLSTNASSKTEYDCIYELITGFPPLYQLISKYDAMTDEFVEKVLLLFNSAIKYPLLPEFVQDKTKPSSMQKAILSGLDIFMTNDSKDTEILILLQLSTISILAFDTREKITKKLGPKLPKASLNRLPTFEAISYMSCSNLRNRIAKIDQFGISTLKAKHILRILKNLAEIIKRKSLITGSESDEIPIWVLASNCFCDLSNKIFKSLQEDAENPLKDNFCDLFINVIVVTLQRINPELDNLTEIDDLNEYSKYREILLENRIIDLFNERQLDTFIYAVWDCSFLYEFDELENALMQDCGTFSELSQKLSSFDFSCIFGSTTNPRFQTKYKCSLECLQDLVNFMLNTNEKLRKLTAPYLSARIALALRRYISDEYLIGRAPIPKLRKTELATLLNGLCVILRGVLDQNSTLGNKQIGVENLQTLSPLILRTIPVSHKMDGLQDKVLELSLGFTKLD", "length": 1636 }, "evidence": [ { "id": "F4K5S0", "url": "https://omabrowser.org/oma/group/F4K5S0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q55BA7-1", "protein_name": "Protein MON2 homolog", "gene_name": "mon2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKNKSALLSFLEMDLRNISSEARNKLLNIKEASERGILYIKYLQEQSATPEILLQNLKSKSDEILKPFLMALESKNQKMISLAIGSVLKLISHSAISNSSIPSILSKMQLLIDVGSDESIQLKVLQGLLVLITTVPDIHDEELSQLLVLCFRLHGSKNTSIQSTSSATLPQIIRIIFDRVSVEMNTANKEILSSPVTTKLINSKSSDNITLSNNNNQDDSSSSSLSTTSDSTTTTKNDDNTGTTTPTTTTTENTDTKTTTTVTETTDTKTTTATDNQSPQLKSSPSNTNVVQQHQQHNKNKSWSNLKPSAKDAYLLLQDLCYITGSDSPEWLPHTTTISRASGLDFIEMILSVHYDIFFKLEEFKNLLKDKICPLLIKNFKFKMDFYHTVRLIRVITQFISKFSSIMVTESDVLLTKTIKMMDLDQPIWTQILALESFRVYSEDPNLLRLFFKNYDKDNNSAKIFETMTIAIGKYVQNLYGLDSSHFVLVQTSKNRLLDLLWQSEVPLIKESYIISVCTECINGIVNAVSKINNPDNSAQQYSDSLEIFTQMANSCWVSILGGISMLLGKTNDEALIQMVLKSLQSFTNTCGDLHLSAPRDALLTCLCKTTTLPSFELLNSNLNLNATTTTTTTTNTNTINNINNINNINNTNNTNNSNNINNTNINTNNINNSEQQQQQQQQQIQSPISSTSTSSNIISSQQSTPSNSLTPQQLSQNNKDGQISINTMEEKLSNFYPTTKNILSVKILFNIAHCMGSLLDESWILVLETLETWNRFLESFLKKKENSNNTQTTTGTGNTINGNNNNNSGGNKSGDNIILPNPSSLSIANNNNINNNNENTSSPKETSSPRTIGSSEVPILMNSMDNLFKSSSQLDLRSCQYLLEALGKLCTQSFNLKSFNSTPNMFGISKLRETALANLYRIDTIWPLISDHIIDAGNHRNPLFRKYSVEFLNSIIKSTISLQQSQQLLQLQKEKLLSQQQQQQQEKEKEKDNSSLNSESNEDQSSDLTNSPVSTTTTTTTTTTTTTTSTINILNSNLSSINSQFIENYEFEKELLELDKNQIQLEFFTTLEELSFSTSNDTKEKVLESINSILSTSGQSLTTSWPIILSILLRMSKCNEKRFISLSFSSLELICNEFLSNLTPECLALTIELIESFVSQKADINISLTGSSGLLTDLTYFLANENSIKTSKYQVSDGKAIDPVKESHSQCRFTKTLNSRIRPSISESSPFFKEKNKSLIDRMWLCSFNSMKTLCIDVRPAIRNGVVVSLFQILTTYFHLFEKELLDVILWSILFPLIQEIKSFSEKADQERIDSDLGGGVMLLVHHSRNTAQKQWDETQVLSIGGMVRIFKTFFDQLFTLPTFDAAWSTLLNHLQTESKSSSKEVSLTSLSFIHEIVNTPSIIDPSHPQLAESIWECLLHLSPKLFDPQNSVPKSLSVYIKVFTDLFNKTRPQLNHAQMNRALEIIFPMGLFIGDSSTVLSNPQTHAIQLIKSLPPITVDIFPSVISILLKYISIGINMVSPPFTPTSATCDFIFPPQTPITKDLVYYSTITEQSIDLIYELFSHSSTTDEMRSLVFEDIIKVLGASMLTKYQKYHSTIWKLSVSNLIKLLPSGLLAINIDSNHLNDIKRNIIWTELIDSIQTFILHERPNHQISPEKRLEEDQYDIDLINAISKEMVGFSGIKVERVSIIRDRLVEILQEGSVLSAHGREKVAQSCYRNMFSICSTTNNNNNNNNKNDNNNNNNTDDNDGNQASESIEIAKVVLPVVLKRCKDVLTRFVIDERQSGNYPLPRYRLSEISFILKEIYELQLQSGVYQPLNNSTTIIKPECKRPHLLELYTILCDCICTSEKEIKELLKNIFLIISKEFLNL", "length": 1874 }, "evidence": [ { "id": "F4K5S0", "url": "https://omabrowser.org/oma/group/F4K5S0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q7Z3U7-1", "protein_name": "Protein MON2 homolog", "gene_name": "MON2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSGTSSPEAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAARNTEILAALKENSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDERHRDIIEQPVLVQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRFCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPATSNQAGNNNLGGSVSAPANSGMVGIGGGVTLLPAFEYRGTWIPILTITVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITSMIEGELGELETECQTTTEEGSSPTQSTEQQDLQSTSDQMDKEIVSRAVWEEMVNACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAICKGSLPPHYALTVLNTTTAATLSNKSYSVQGQSVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEVCQHPNSRMREWGAEALTSLIKAGLTFNHDPPLSQNQRLQLLLLNPLKEMSNINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCTCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVVLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSDKPETPPVVNVPVPVLIGPISGMSRPFVRTDSIGEKLGRYSSSEPPIVTDELEDLNLWWAAWNTWYRIGSESTKPPITFDKLTFIPSQPFLTALIQIFPALYQHIKTGFNMDDLQKLGVILHSAISVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICVGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVSSLLRVLSIGLPVARQHASSGKFDSMWPELANTFEDFLFTKSIPPDNLSIQEFQRNENIDVEVVQLISNEILPYANFIPKEFVGQIMTMLNKGSIHSQSSSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTQPENVDGNTWAQVIALYPTLVECITCSSSEVCSALKEALVPFKDFMQPPASRVQNGES", "length": 1717 }, "evidence": [ { "id": "F4K5S0", "url": "https://omabrowser.org/oma/group/F4K5S0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80TL7-1", "protein_name": "Protein MON2 homolog", "gene_name": "Mon2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCTNSPEAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAARNTEILAALKENSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDDRHRDIEPPVPIQGNSNRRSVSTLRPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDSDKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPATANQAGNNNAGGPASAPANSGVVGVGGGVTLLPAFEYRGAWIPILTVTVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGELGEVEAEGPSVTEGASSQSSERRDEQAASDPMDQETVSRAVWEEMVSACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAICKGSLPPHYALTVLNATTAATLSNKSYSIQGQSVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEKVCQHPNSRMREWGAEALTSLIRAGLTFSHEPPLPQNQRLQLLLLNPLKEMSNINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCSCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVSLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSEKPEPPAVSVPVPVLLGNLSGPGLSRPFVRTDSIGEKLGRCGSETPVVTDELEDLKLWWAAWNTWHRTGSESTEPPSSVDELTFIPSQPFLTALVQIFPALYQHIKAGFSMADLQKLGVILHSAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICVGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVASLLKVLSIGLPVARQHASSGKFDSMWPELASTLEDFLFTKSIPPDNLSIQEFQRNESIDVEVVQLISAEILPYANLIPKAFVGQMMTMLNKGSIHSQPCSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTQPENVDGNTWSQVIALYPTLVECITCSSSDVGSALKEALAPFKDFMQPPASRVQNGES", "length": 1715 }, "evidence": [ { "id": "F4K5S0", "url": "https://omabrowser.org/oma/group/F4K5S0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VLT1-1", "protein_name": "Protein MON2 homolog", "gene_name": "mon2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSFVGGGGCGGQDVHKFVEALQADFKTLSLETKKKYPQIKEACEEAISKLCTAGSSQQNSVYYTVNQILYPLVQGCETKDLKIIKFCLGMMQRLITQQVVDQKGALYITNALWTLMENNIEEVKVLQTVTLLLTTNTVVHGDTLAKALVLCFRLHYAKNPTIVNTAGATIRQLVSLVFERVYLEKDSVSSLQQQQSSGSPAEGEGGNQDVQTFASDAFLLFQDLVQLVNADQPYWLLGMTEMTRTFGLELLEAVLTNFSAVFHESNDFRLLLKERVCALVIKLFSPNVKHRQLPAPSNGNAPVPAEKPYFPISMRLLRLVAILIQKYHTILVTECEIFLSLIIKFLDPDKPAWQRALALEVIHKLVTRSSLIAFFCKSYDLKNHATNIVHDMIAAMGSYIRYSLINASAMLNGQQNGVANSLTAMSGSNQCGFMFRGAYLPLVATYAPGVSKAVYLEMLDKIDASNIPDSYGISVGHAILLDMTRSIGGVIQRTPELHPSHNTAVITEEEHKPLCLQLVNSSWSALLSAFIPLVETSIDEATTENILKAMQNYAALCGMLEQLQPRDAFIMAMCRASFPPHYAMSIFANTTQSDGDLRCHTRSGSQDLSSQFINSCSGDAGDFRPQIVAVGTPLPSASLPHSVMQAPVMLTNKNLQCMRAILFLAHNNGGILGTSWHIVLQTLQHLVWILGLKPSTGGSLQAMPKPAVEANVGIQTAVMADLPVLSQMLSQLFESSQYLDDVALHHLIDALCKLSHEAMELAYANREPSLFAVAKLLETGLVNMPRIKVLWRPLTNHLLEVCQHRHIRMREWGVEAITYLVKSALQFKHKTPLKENMELQTMLLSPLSELSTVLHADVRQRQLDCVLQILNTAGEILSFGWPAIIEIIGAVNEHHGEPLIRTAFQCLQLVITDFLTVMPWRCLPLCISTAAKFGSQTQELNISLTAIGLMWNISDFFNQNQDKLMSTQLQDVSILPDFPGTVKMPQFDKLWMCLYAKLGELCVDLRPAVRKSAGQTLFSTISAHGSLLNPPTWQALVWQVLFPLLDNVRALSSSASNEKVDASGNILIHHSRNTAQKQWAETQVLTLSGVCRVFNTKRELLQMLGDFERAWSLILEFIQNAALSKNGEVSLAALKSLQEIMYHNTAERTERALKDPQTAQEQDEEIWTIAWNIWLSIGMESTKMSTSTSAKLQQQNSNGAETQEDFYIPSQAFLTALIQIFPAIFQHIQVKFTAADFDKFCTVLTNAVCIPVQTDAVPYIMSTVSDTLLTPLHDGILDCMELIQKEATKPDSHISQLIPAIFRQLLIFSKFACAPPTFQQSVEHKYAKSSGHYANNASVEVVSMNYIPFGEKSISICVKLYQTTATEDSVVQEQILHDIVKALRTPLAMKYKCLSSSTWKLAISSLISVLHTGLKVARAKPQHFASLWDDLADTLDKFLFPASVCTIEDRGLEEIVLDETIDCQVIELLRDEVLPHSHEMPHQFIMQIVVLLNKGSIHSASDTNICYESDWKLREIFAKTCFETLLQFSLLEDHANTNNNRLNANVLTAGAAGAGGKDFAGRLAVTALLHRFQEVLKRFNDDERQSGKCPLPRFRLSEISFVLKAIATLVVSMKKAPASKVNKPAWDQLIGLYPYLVDCTTTTSPEVSRSLREALLQYTDLLQAPRSCSAATSNDNVIQSNGQE", "length": 1684 }, "evidence": [ { "id": "F4K5S0", "url": "https://omabrowser.org/oma/group/F4K5S0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F4K5S0", "url": "https://www.uniprot.org/uniprotkb/F4K5S0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F4K5S0", "url": "https://www.uniprot.org/uniprotkb/F4K5S0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1129, "end_pos": 1131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1425, "end_pos": 1427, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1633, "end_pos": 1635, "annotation": "n_glycosylation_sequon" }, { "start_pos": 200, "end_pos": 202, "annotation": "n_glycosylation_sequon" }, { "start_pos": 914, "end_pos": 916, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4K5S0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1658, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4K5S0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4K5S0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4K5S0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K5S0" }, { "id": "PF16206", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16206" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mon2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 886, "end_pos": 1146, "start_aa": "Asp", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "F4K5S0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K5S0" }, { "id": "PF12783", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12783" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mon2/Sec7/BIG1-like HUS", "eco_id": "ECO_0000259", "start_pos": 244, "end_pos": 379, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "F4K5S0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K5S0" }, { "id": "PF16213", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16213" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mon2/Sec7/BIG1-like dimerisation and cyclophilin-binding", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 169, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 41, 585, 591, 604, 1494, 1513 ], "sequon_annotation_sites": [ { "start_pos": 1129, "end_pos": 1131 }, { "start_pos": 1425, "end_pos": 1427 }, { "start_pos": 1633, "end_pos": 1635 }, { "start_pos": 200, "end_pos": 202 }, { "start_pos": 914, "end_pos": 916 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JY55-1", "uniprot_ac": "F4JY55", "uniprot_id": "F4JY55_ARATH", "mass": { "chemical_mass": 37940.0, "monoisotopic_mass": 37940.0 }, "refseq": {}, "gene_names": [ { "name": "T14C9.70", "type": "synonym", "evidence": [ { "id": "F4JY55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JY55" } ] }, { "name": "T14C9_70", "type": "synonym", "evidence": [ { "id": "F4JY55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JY55" } ] } ], "protein_names": [ { "name": "DNAJ heat shock family protein", "type": "synonym", "evidence": [ { "id": "F4JY55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JY55/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JY55", "url": "https://www.uniprot.org/uniprotkb/F4JY55" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JY55", "locus": {} } ], "crossref": [ { "id": "F4JY55", "url": "https://alphafold.ebi.ac.uk/entry/F4JY55", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G25530", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G25530", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd10747", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10747", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "832628", "url": "https://www.ncbi.nlm.nih.gov/gene/832628", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001623", "url": 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"Enzyme and Pathway" ] }, { "id": "SSKYVYH", "url": "https://omabrowser.org/oma/group/SSKYVYH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24078", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24078", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24078:SF538", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24078:SF538", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01556", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01556", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G25530", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G25530", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BHE8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BHE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JY55", "url": "https://www.uniprot.org/uniprotkb/F4JY55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JY55-1", "url": "https://www.uniprot.org/uniprotkb/F4JY55-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLDYYDILKVNRNATEDDLKKSYRKLAMKWHPDKNPNTKTEAEAKFKQISEAYEAKYEVMFQVLSDPQKRAVYDQYGEEGLSDMPPPGSTGNNGRAGGFNPRNAEDIFAEFFGSSPFGFGSAGGPGRSMRFQSDGGGGMFGGFGGGNNGSENNIFRTYSEGTPAPKKPPPVESKLPCSLEELYSGSTRKMKISRSIVDANGRQAQETEILTIVVKPGWKKGTKIKFPDKGNEQVNQLPADLVFVIDEKPHDLFTRDGNDLITSRRVTLAEAIGGTTVNINTLDGRNLPVGVAEIVSPGYEFVVPGEGMPIAKEPRNKGDLKIKFDVQFPARLTTEQKSALKRVLAG", "length": 347, "header": "tr|F4JY55-1|F4JY55_ARATH Isoform 1 of DNAJ heat shock family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JY55-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BHE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHE8/entry", "sequence": { "sequence": "MGLDYYDILKVNRNATEDDLKKSYRKLAMKWHPDKNPNTKTEAEAKFKQISEAYEVLSDPQKRAVYDQYGEEGLSDMPPPGSTGNNGRAGGFNPRNAEDIFAEFFGSSPFGFGSAGGPGRSMRFQSDGGGGMFGGFGGGNNGSENNIFRTYSEGTPAPKKPPPVESKLPCSLEELYSGSTRKMKISRSIVDANGRQAQETEILTIVVKPGWKKGTKIKFPDKGNEQVNQLPADLVFVIDEKPHDLFTRDGNDLITSRRVTLAEAIGGTTVNINTLDGRNLPVGVAEIVSPGYEFVVPGEGMPIAKEPRNKGDLKIKFDVQFPARLTTEQKSALKRVLAG", "length": 339, "header": "tr|A0A1P8BHE8-1|F4JY55_ARATH Computationally mapped isoform of DNAJ heat shock family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JY55-1" }, "locus": { "chromosome": "5", "start_pos": 8889271, "end_pos": 8891128, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G25530.2", "url": "https://www.ensemblgenomes.org/id/AT5G25530.2" }, { "database": "Ensembl Peptide", "id": "AT5G25530.2", "url": "https://www.ensemblgenomes.org/id/AT5G25530.2" } ] } }, { "isoform_ac": "F4JY55-1", "url": "https://www.uniprot.org/uniprotkb/F4JY55/entry", "sequence": { "sequence": "MGLDYYDILKVNRNATEDDLKKSYRKLAMKWHPDKNPNTKTEAEAKFKQISEAYEAKYEVMFQVLSDPQKRAVYDQYGEEGLSDMPPPGSTGNNGRAGGFNPRNAEDIFAEFFGSSPFGFGSAGGPGRSMRFQSDGGGGMFGGFGGGNNGSENNIFRTYSEGTPAPKKPPPVESKLPCSLEELYSGSTRKMKISRSIVDANGRQAQETEILTIVVKPGWKKGTKIKFPDKGNEQVNQLPADLVFVIDEKPHDLFTRDGNDLITSRRVTLAEAIGGTTVNINTLDGRNLPVGVAEIVSPGYEFVVPGEGMPIAKEPRNKGDLKIKFDVQFPARLTTEQKSALKRVLAG", "length": 347, "header": "tr|F4JY55-1|F4JY55_ARATH Isoform 1 of DNAJ heat shock family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JY55-1" }, "locus": { "chromosome": "5", "start_pos": 8889665, "end_pos": 8890974, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G25530.1", "url": "https://www.ensemblgenomes.org/id/AT5G25530.1" }, { "database": "Ensembl Peptide", "id": "AT5G25530.1", "url": "https://www.ensemblgenomes.org/id/AT5G25530.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 163, "start_aa": "Thr", "end_pos": 163, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr163", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BHE8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHE8" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BHE8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHE8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G25530", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G25530", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7FLR1-1", "protein_name": "DnaJ homolog subfamily B member 13 isoform X1", "gene_name": "Dnajb13", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGVDYYAVLQVTRNSEDAQIKKAYRKLALKNHPLKSNEPSAPEIFKQIAEAYDVLSDQTSRQQVARAILAHHRPELSDCPPASPVTHTPDPSSRSHVSTAVKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPDKVFHEFFGGDNPFSEFFDAEGNDIDLNFGGLRGRGVQKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDKYSSTIKDKILTIDVRPGWRQGTRITFEKEGDQGPNIIPADIIFVVKEKLHPRFRRERDNLLFVYPIPLGKALTCCTVEVRTLDDRLLNIPINDIVHWKKEKTESLDNQSLSWSPSLERDPKRRKEGMNLERENTSHGGGTSSSCFYHRPSNPPHGLSQRKLTGPGEEPHSCVPKSKTPEYLAH", "length": 395 }, "evidence": [ { "id": "F4JY55", "url": "https://omabrowser.org/oma/group/F4JY55/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1C599-1", "protein_name": "DnaJ homolog subfamily B member 13", "gene_name": "DNAJB13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGQDYYAVLELGRNATDADIKKAYRLLALENHPQKCKEPLAQERFRLLAEAYDVLSDPVRRGIYDRFGEEGLKGGIPVGSDGEDAWTAGYVFHNNPDKVFKEFFGGHNPFAEFFTKDGLEVTLPFGGLHGRGVMKQDPPMVWDLHVSLEDLFFGCTKKMKISHRVMNEDGQTSTIRDKILIIDVQPGWKQGTRVTFEKEGDQGPNIIPSDITFVVQEKPHPRFKRTNDDLIYVASIPLGKALIGCTVDVRTLDGRLLSIPINDIVHPTYCKVVPGEGMPLLEDPRRRGDLLIHFNICFPKRLTPDKKVLLRRALLS", "length": 316 }, "evidence": [ { "id": "F4JY55", "url": "https://omabrowser.org/oma/group/F4JY55/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1SUR7-1", "protein_name": "DnaJ homolog subfamily B member 13", "gene_name": "DNAJB13", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQDYYAVLQITRNSEDAQIKNAYRKLALKNHPLRSIEPSSAETFRQIAEAYDVLSDPVKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPEKVFHEFFGGDNPFNEFFDAEGNEVDLNFGGLRGRGVKKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDGFSSTIKDKILTIDVKPGWRQGTRITFEKEGDQGPNIIPADIIFIVKEKLHPRFRRENDDLFFVNAIPLGKALTCCTVEVKTLDDRLLNIPINDIVHPKYFKKVPGEGMPLPEEPARKGDLFIFFDIQFPTRLTPQKKQMLRQALLT", "length": 316 }, "evidence": [ { "id": "F4JY55", "url": "https://omabrowser.org/oma/group/F4JY55/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P59910-1", "protein_name": "DnaJ homolog subfamily B member 13", "gene_name": "DNAJB13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQDYYSVLGITRNSEDAQIKQAYRRLALKHHPLKSNEPSSAEIFRQIAEAYDVLSDPMKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGKPEKVFHEFFGGNNPFSEFFDAEGSEVDLNFGGLQGRGVKKQDPQVERDLYLSLEDLFFGCTKKIKISRRVLNEDGYSSTIKDKILTIDVKPGWRQGTRITFEKEGDQGPNIIPADIIFIVKEKLHPRFRRENDNLFFVNPIPLGKALTCCTVEVRTLDDRLLNIPINDIIHPKYFKKVPGEGMPLPEDPTKKGDLFIFFDIQFPTRLTPQKKQMLRQALLT", "length": 316 }, "evidence": [ { "id": "F4JY55", "url": "https://omabrowser.org/oma/group/F4JY55/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80Y75-1", "protein_name": "DnaJ homolog subfamily B member 13", "gene_name": "Dnajb13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLDYYAVLQVTRNSEDAQIKKAYRKLALKNHPLKSSEPGAPEIFKQIAEAYDVLSDPVKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPDKVFHEFFGGDNPFSEFFDAEGNDIDLNFGGLWGRGVQKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDRYSSTIKDKILTIDVRPGWRQGTRITFEKEGDQGPNIIPADIIFIVKEKLHPRFRREHDNLFFVYPIPLGKALTCCTVEVKTLDDRLLNIPINDIVHPKYFKIVPGEGMPLPENPSKKGDLFIFFDIQFPTRLTPQKKQMLRQALLT", "length": 316 }, "evidence": [ { "id": "F4JY55", "url": "https://omabrowser.org/oma/group/F4JY55/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "unfolded protein binding", "id": 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"MIKAAMDLGCLDLGCLSDKKSGVGVSDHLECSSSPSKLGKNKSPRETSALRKSQSKRSSQRKTSPLGWFPRRKGDSYLNRKIKKLQEVGGMNQTLDETLGDSNPHYCKIVREQMAVREAAGKAMELRKAALVEASWCRILRAARIPCLEAETLMENAEKAAVEAFEAASALGVIMHDKPNSSRKQYRIETSGTHGRGSPTHTVTASFETAFDVDKEVAAAVKTAFARLANCPSFSKAEIKDLLKKISENPDVRDNHEITEMSSECDTESDSELGILHKVDEEVAECEETSYFKMRQLKVKRRQSFGKFSREKLVELMLERLQGLHEDQLSSLASVVATCGLNEALAEVSSQRGQTTSFEPIVSDTRSRRDSKFGSLMEGKTTRDGTETEIPSLDKYLVKHMTKLEREVHEAKRVSKEVSEKNKKVPQGVASDPVPDLGSILVKHSSRLEKEIEEAKKNAGVSFGKYQKTSSRNKTPLDPIPDLESLLVKKHVSGLEKEVQETIKNCGKMYENVKKPGRKDGLSEVPSLDSCLVKHFSKLEKEVQEAKKRSKEDLEARNLETVSSVLLTEELGKENVDSNNNKAEGQEESLDMILVKPVHRLETEKIASEAVYGNRRIQKRKQGAKTESNYESLDKILVKHVPKLEKEKQMFKAGVEETENSKRNNEGSLNQGHESMKVAKPILSRRQMRDKEIQETWGGLGLGESKNNNQKKPESKKTEATENLGEETRPVLTRRQERDREMLEAWGGLGLGDSTSYQPVNKNKRKPESEKMETATPLLTRRQARDREMQEAWGGLDLGNSIRPSLSKLEREKAAWIKAEKEETTRGN", "length": 828, "header": "tr|Q9C6C7-1|Q9C6C7_ARATH Isoform 1 of Myosin-2 heavy chain-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C6C7-1" }, "isoforms": [ { "isoform_ac": "B3H5B7-1", "url": "https://www.uniprot.org/uniprotkb/B3H5B7/entry", "sequence": { "sequence": "MQNKSPRETSALRKSQSKRSSQRKTSPLGWFPRRKGDSYLNRKIKKLQEVGGMNQTLDETLGDSNPHYCKIVREQMAVREAAGKAMELRKAALVEASWCRILRAARIPCLEAETLMENAEKAAVEAFEAASALGVIMHDKPNSSRKQYRIETSGTHGRGSPTHTVTASFETAFDVDKEVAAAVKTAFARLANCPSFSKAEIKDLLKKISENPDVRDNHEITEMSSECDTESDSELGILHKVDEEVAECEETSYFKMRQLKVKRRQSFGKFSREKLVELMLERLQGLHEDQLSSLASVVATCGLNEALAEVSSQRGQTTSFEPIVSDTRSRRDSKFGSLMEGKTTRDGTETEIPSLDKYLVKHMTKLEREVHEAKRVSKEVSEKNKKVPQGVASDPVPDLGSILVKHSSRLEKEIEEAKKNAGVSFGKYQKTSSRNKTPLDPIPDLESLLVKKHVSGLEKEVQETIKNCGKMYENVKKPGRKDGLSEVPSLDSCLVKHFSKLEKEVQEAKKRSKEDLEARNLETVSSVLLTEELGKENVDSNNNKAEGQEESLDMILVKPVHRLETEKIASEAVYGNRRIQKRKQGAKTESNYESLDKILVKHVPKLEKEKQMFKAGVEETENSKRNNEGSLNQGHESMKVAKPILSRRQMRDKEIQETWGGLGLGESKNNNQKKPESKKTEATENLGEETRPVLTRRQERDREMLEAWGGLGLGDSTSYQPVNKNKRKPESEKMETATPLLTRRQARDREMQEAWGGLDLGNSIRPSLSKLEREKAAWIKAEKEETTRGN", "length": 790, "header": "tr|B3H5B7-1|Q9C6C7_ARATH Computationally mapped isoform of Myosin-2 heavy chain-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C6C7-1" }, "locus": { "chromosome": "1", "start_pos": 18460193, "end_pos": 18463791, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G49870.2", "url": "https://www.ensemblgenomes.org/id/AT1G49870.2" }, { "database": "Ensembl Peptide", "id": "AT1G49870.2", "url": "https://www.ensemblgenomes.org/id/AT1G49870.2" } ] } }, { "isoform_ac": "Q9C6C7-1", "url": "https://www.uniprot.org/uniprotkb/Q9C6C7/entry", "sequence": { "sequence": "MIKAAMDLGCLDLGCLSDKKSGVGVSDHLECSSSPSKLGKNKSPRETSALRKSQSKRSSQRKTSPLGWFPRRKGDSYLNRKIKKLQEVGGMNQTLDETLGDSNPHYCKIVREQMAVREAAGKAMELRKAALVEASWCRILRAARIPCLEAETLMENAEKAAVEAFEAASALGVIMHDKPNSSRKQYRIETSGTHGRGSPTHTVTASFETAFDVDKEVAAAVKTAFARLANCPSFSKAEIKDLLKKISENPDVRDNHEITEMSSECDTESDSELGILHKVDEEVAECEETSYFKMRQLKVKRRQSFGKFSREKLVELMLERLQGLHEDQLSSLASVVATCGLNEALAEVSSQRGQTTSFEPIVSDTRSRRDSKFGSLMEGKTTRDGTETEIPSLDKYLVKHMTKLEREVHEAKRVSKEVSEKNKKVPQGVASDPVPDLGSILVKHSSRLEKEIEEAKKNAGVSFGKYQKTSSRNKTPLDPIPDLESLLVKKHVSGLEKEVQETIKNCGKMYENVKKPGRKDGLSEVPSLDSCLVKHFSKLEKEVQEAKKRSKEDLEARNLETVSSVLLTEELGKENVDSNNNKAEGQEESLDMILVKPVHRLETEKIASEAVYGNRRIQKRKQGAKTESNYESLDKILVKHVPKLEKEKQMFKAGVEETENSKRNNEGSLNQGHESMKVAKPILSRRQMRDKEIQETWGGLGLGESKNNNQKKPESKKTEATENLGEETRPVLTRRQERDREMLEAWGGLGLGDSTSYQPVNKNKRKPESEKMETATPLLTRRQARDREMQEAWGGLDLGNSIRPSLSKLEREKAAWIKAEKEETTRGN", "length": 828, "header": "tr|Q9C6C7-1|Q9C6C7_ARATH Isoform 1 of Myosin-2 heavy chain-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C6C7-1" }, "locus": { "chromosome": "1", "start_pos": 18460158, "end_pos": 18463791, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G49870.1", "url": "https://www.ensemblgenomes.org/id/AT1G49870.1" }, { "database": "Ensembl Peptide", "id": "AT1G49870.1", "url": "https://www.ensemblgenomes.org/id/AT1G49870.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 801, "end_pos": 801, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C6C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C6C7" } ], "site_lbl": "Ser801" }, { "start_pos": 805, "end_pos": 805, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C6C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C6C7" } ], "site_lbl": "Ser805" }, { "start_pos": 807, "end_pos": 807, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C6C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C6C7" } ], "site_lbl": "Ser807" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "B3H5B7", "url": "https://www.uniprot.org/uniprotkb/B3H5B7" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H5B7", "url": "https://www.uniprot.org/uniprotkb/B3H5B7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G49870", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G49870", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9C6C7", "url": "https://www.uniprot.org/uniprotkb/Q9C6C7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 180, "end_pos": 182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" }, { "start_pos": 473, "end_pos": 475, "annotation": "n_glycosylation_sequon" }, { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 801, 805, 807 ], "sequon_annotation_sites": [ { "start_pos": 180, "end_pos": 182 }, { "start_pos": 41, "end_pos": 43 }, { "start_pos": 473, "end_pos": 475 }, { "start_pos": 92, "end_pos": 94 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q8LBN7-1", "uniprot_ac": "Q8LBN7", "uniprot_id": "COSA_ARATH", "mass": { "chemical_mass": 10420.0, "monoisotopic_mass": 10420.0 }, "refseq": { "ac": "NP_001329390", "name": "costars family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001329390" }, "gene_names": [ { "name": "T16L1.130", "type": "synonym", "evidence": [ { "id": "NP_001329390", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001329390" }, { "id": "Q8LBN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LBN7" } ] }, { "name": "T16L1_130", "type": "synonym", "evidence": [ { "id": "NP_001329390", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001329390" }, { "id": "Q8LBN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LBN7" } ] } ], "protein_names": [ { "name": "Costars family protein At4g33640", "type": "recommended", "evidence": [ { "id": "Q8LBN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LBN7/entry#names_and_taxonomy" } ] }, { "name": "costars family protein", "type": "synonym", "evidence": [ { "id": "NP_001329390", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001329390" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LBN7", "url": "https://www.uniprot.org/uniprotkb/Q8LBN7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q8LBN7", "locus": {} } ], "crossref": [ { "id": "Q8LBN7", "url": "https://alphafold.ebi.ac.uk/entry/Q8LBN7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G33640", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G33640", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "829505", "url": "https://www.ncbi.nlm.nih.gov/gene/829505", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027817", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027817", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038095", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038095", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G33640", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G33640", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QRVHDNV", "url": "https://omabrowser.org/oma/group/QRVHDNV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A178V1V2", "url": "https://www.orthodb.org/?gene=A0A178V1V2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q8LBN7", "url": "https://www.orthodb.org/?gene=Q8LBN7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46334", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46334", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46334:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46334:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14705", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14705", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q8LBN7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q8LBN7", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_001329390", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001329390", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G33640", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G33640", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A178V1V2", "url": "https://www.uniprot.org/uniprotkb/A0A178V1V2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A178V1V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A178V1V2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8LBN7", "url": "https://www.uniprot.org/uniprotkb/Q8LBN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8LBN7-1", "url": "https://www.uniprot.org/uniprotkb/Q8LBN7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNVDEEIQKLEEEIHRLGSRQTDGSYKVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVAFEGELLLQGVHDKVEITLRPTPPPPQAAAATAASS", "length": 95, "header": "sp|Q8LBN7-1|COSA_ARATH Isoform 1 of Costars family protein At4g33640 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8LBN7-1" }, "isoforms": [ { "isoform_ac": "A0A178V1V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A178V1V2/entry", "sequence": { "sequence": "MLKKNRYDKVFKPVKCAHFGLFNRIRRDKNESIELSSSETERVSSSIQSFYNIRLLRPEISKEEERMNVDEEIQKLEEEIHRLGSRQTDGSYKVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVAFEGELLLQGVHDKVEITLRPTPPPPQAAAATAASS", "length": 161, "header": "tr|A0A178V1V2-1|COSA_ARATH Computationally mapped isoform of Costars family protein At4g33640 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8LBN7-1" }, "locus": { "chromosome": "4", "start_pos": 16159727, "end_pos": 16160489, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G33640.2", "url": "https://www.ensemblgenomes.org/id/AT4G33640.2" }, { "database": "Ensembl Peptide", "id": "AT4G33640.2", "url": "https://www.ensemblgenomes.org/id/AT4G33640.2" } ] } }, { "isoform_ac": "Q8LBN7-1", "url": "https://www.uniprot.org/uniprotkb/Q8LBN7/entry#Q8LBN7-1", "sequence": { "sequence": "MNVDEEIQKLEEEIHRLGSRQTDGSYKVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVAFEGELLLQGVHDKVEITLRPTPPPPQAAAATAASS", "length": 95, "header": "sp|Q8LBN7-1|COSA_ARATH Isoform 1 of Costars family protein At4g33640 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8LBN7-1" }, "locus": { "chromosome": "4", "start_pos": 16159548, "end_pos": 16160394, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G33640.1", "url": "https://www.ensemblgenomes.org/id/AT4G33640.1" }, { "database": "Ensembl Peptide", "id": "AT4G33640.1", "url": "https://www.ensemblgenomes.org/id/AT4G33640.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 81, "start_aa": "Thr", "end_pos": 81, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr81", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [ { "start_pos": 94, "end_pos": 94, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8LBN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LBN7" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser94" }, { "start_pos": 95, "end_pos": 95, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8LBN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LBN7" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ], "site_lbl": "Ser95" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A178V1V2", "url": "https://www.uniprot.org/uniprotkb/A0A178V1V2" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-alpha-acetylation features.", "journal": "Molecular & cellular proteomics : MCP", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "Q8LBN7", "url": "https://www.uniprot.org/uniprotkb/Q8LBN7" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q8LBN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LBN7" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8LBN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LBN7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A178V1V2", "url": "https://www.uniprot.org/uniprotkb/A0A178V1V2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G33640", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G33640", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2N6V3-1", "protein_name": "Costars family protein ABRACL", "gene_name": "Abracl", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFQDDRCANLFEALVGTLKAAKRRKIVTYTGELLLQGVHDDVDIVLLQD", "length": 81 }, "evidence": [ { "id": "Q8LBN7", "url": "https://omabrowser.org/oma/group/Q8LBN7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3ZBN0-1", "protein_name": "Costars family protein ABRACL", "gene_name": "ABRACL", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNVDHEVKLLVEEIHRLGSKNADGKLSVKFGVLFQDDKCANLFEALVGTLKAAKRRKIITYSGELLLQGVHDDVDIILLQD", "length": 81 }, "evidence": [ { "id": "Q8LBN7", 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"https://www.ebi.ac.uk/interpro/entry/IPR042277", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G25420", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G25420", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DLQLKHM", "url": "https://omabrowser.org/oma/group/DLQLKHM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12161:SF81", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12161:SF81", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03398", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03398", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_564235", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_564235", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G25420", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G25420", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8ANA1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8ANA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANA1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ICH3", "url": "https://www.uniprot.org/uniprotkb/F4ICH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ICH3-1", "url": "https://www.uniprot.org/uniprotkb/F4ICH3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C6L2", "url": "https://www.uniprot.org/uniprotkb/Q9C6L2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C6L2-1", "url": "https://www.uniprot.org/uniprotkb/Q9C6L2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLLNQLFNRGIFGAKCKTSLNLAIARMKLLQNKRDMQLKHMKKEIAHFLQAGQEPIARIRVEHVIREMNLWAAYEILELFCEFILARVPILESEKECPRELREAIASIIFAAPRCSEVPDLLQIKNLFGTKYGKEFIMVASELRPDSGVNRTIIEKLSPTSPSGAARLKMLKEIAQEYSLNWDSSATEAEFMKSHEDLLGGAKQIHRQDGISESRPSQQGYGQSSVSREVESLPAEATQRFQKLQAQNPVSKSMPSSKLTSAFQAPPDTRRNQTDVMEIARAALASADRATAAARAAAQLVNVSYGATTPTVAAEGKPLNLM", "length": 323, "header": "tr|Q9C6L2-1|Q9C6L2_ARATH Isoform 1 of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL2 PE=1 SV=1 CANONICAL=Q9C6L2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8ANA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANA1/entry", "sequence": { "sequence": "MKLLQNKRDMQLKHMKKEIAHFLQAGQEPIARIRVEHVIREMNLWAAYEILELFCEFILARVPILESEKECPRELREAIASIIFAAPRCSEVPDLLQIKNLFGTKYGKEFIMVASELRPDSGVNRTIIEKLSPTSPSGAARLKMLKEIAQEYSLNWDSSATEAEFMKSHEDLLGGAKQIHRQDGISESRPSQQGYGQSSVSREVESLPAEATQRFQKLQAQNPVSKSMPSSKLTSAFQAPPDTRRNQTDVMEIARAALASADRATAAARAAAQLVNVSYGATTPTVAAEGKPLNLM", "length": 296, "header": "tr|A0A1P8ANA1-1|Q9C6L2_ARATH Computationally mapped isoform of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL2 PE=1 SV=1 CANONICAL=Q9C6L2-1" }, "locus": { "chromosome": "1", "start_pos": 8915915, "end_pos": 8918267, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G25420.4", "url": "https://www.ensemblgenomes.org/id/AT1G25420.4" }, { "database": "Ensembl Peptide", "id": "AT1G25420.4", "url": "https://www.ensemblgenomes.org/id/AT1G25420.4" } ] } }, { "isoform_ac": "F4ICH3-1", "url": "https://www.uniprot.org/uniprotkb/F4ICH3/entry", "sequence": { "sequence": "MNLWAAYEILELFCEFILARVPILESEKECPRELREAIASIIFAAPRCSEVPDLLQIKNLFGTKYGKEFIMVASELRPDSGVNRTIIEKLSPTSPSGAARLKMLKEIAQEYSLNWDSSATEAEFMKSHEDLLGGAKQIHRQDGISESRPSQQGYGQSSVSREVESLPAEATQRFQKLQAQNPVSKSMPSSKLTSAFQAPPDTRRNQTDVMEIARAALASADRATAAARAAAQLVNVSYGATTPTVAAEGKPLNLM", "length": 255, "header": "tr|F4ICH3-1|Q9C6L2_ARATH Computationally mapped isoform of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL2 PE=1 SV=1 CANONICAL=Q9C6L2-1" }, "locus": { "chromosome": "1", "start_pos": 8916028, "end_pos": 8918246, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G25420.2", "url": "https://www.ensemblgenomes.org/id/AT1G25420.2" }, { "database": "Ensembl Peptide", "id": "AT1G25420.2", "url": "https://www.ensemblgenomes.org/id/AT1G25420.2" } ] } }, { "isoform_ac": "Q9C6L2-1", "url": "https://www.uniprot.org/uniprotkb/Q9C6L2/entry", "sequence": { "sequence": "MSLLNQLFNRGIFGAKCKTSLNLAIARMKLLQNKRDMQLKHMKKEIAHFLQAGQEPIARIRVEHVIREMNLWAAYEILELFCEFILARVPILESEKECPRELREAIASIIFAAPRCSEVPDLLQIKNLFGTKYGKEFIMVASELRPDSGVNRTIIEKLSPTSPSGAARLKMLKEIAQEYSLNWDSSATEAEFMKSHEDLLGGAKQIHRQDGISESRPSQQGYGQSSVSREVESLPAEATQRFQKLQAQNPVSKSMPSSKLTSAFQAPPDTRRNQTDVMEIARAALASADRATAAARAAAQLVNVSYGATTPTVAAEGKPLNLM", "length": 323, "header": "tr|Q9C6L2-1|Q9C6L2_ARATH Isoform 1 of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL2 PE=1 SV=1 CANONICAL=Q9C6L2-1" }, "locus": { "chromosome": "1", "start_pos": 8915915, "end_pos": 8918267, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G25420.1", "url": "https://www.ensemblgenomes.org/id/AT1G25420.1" }, { "database": "Ensembl Peptide", "id": "AT1G25420.1", "url": "https://www.ensemblgenomes.org/id/AT1G25420.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 275, "end_pos": 275, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ICH3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ICH3" }, { "database": "iPTMnet", "id": "Q9C6L2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C6L2" } ], "site_lbl": "Thr275" }, { "start_pos": 287, "end_pos": 287, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ICH3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ICH3" }, { "database": "iPTMnet", "id": "Q9C6L2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C6L2" } ], "site_lbl": "Ser287" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ANA1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANA1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ANA1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANA1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G25420", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G25420", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "Q9C6L2", "url": "https://www.uniprot.org/uniprotkb/Q9C6L2" } ], "pmid": "" }, { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "Q9C6L2", "url": "https://www.uniprot.org/uniprotkb/Q9C6L2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9C6L2", "url": "https://www.uniprot.org/uniprotkb/Q9C6L2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" }, { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 275, 287 ], "sequon_annotation_sites": [ { "start_pos": 151, "end_pos": 153 }, { "start_pos": 273, "end_pos": 275 }, { "start_pos": 303, "end_pos": 305 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C736-1", "uniprot_ac": "Q9C736", "uniprot_id": "Q9C736_ARATH", "mass": { "chemical_mass": 59143.0, "monoisotopic_mass": 59143.0 }, "refseq": {}, "gene_names": [ { "name": "F11I4.14", "type": "synonym", "evidence": [ { "id": "Q9C736", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C736" } ] }, { "name": "F11I4_14", "type": "synonym", "evidence": [ { "id": "Q9C736", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C736" } ] } ], "protein_names": [ { "name": "Auxin-responsive GH3 family protein", "type": "synonym", "evidence": [ { "id": "Q9C736", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C736/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C736", "url": "https://www.uniprot.org/uniprotkb/Q9C736" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C736", "locus": {} } ], "crossref": [ { "id": "AT1G48670", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G48670", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "841289", "url": "https://www.ncbi.nlm.nih.gov/gene/841289", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G48670", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G48670", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GKAMEFH", "url": "https://omabrowser.org/oma/group/GKAMEFH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31901", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31901", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31901:SF52", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31901:SF52", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03321", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03321", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23571", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23571", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23572", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23572", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G48670", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G48670", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8APW1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8APW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8APW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8APW1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C736", "url": "https://www.uniprot.org/uniprotkb/Q9C736", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C736-1", "url": "https://www.uniprot.org/uniprotkb/Q9C736-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMNPSLNLMDLEELTSNAKQIQEDVLEEILTLNANTEYLHRFLHGSSDKVLFKKNVPVVTYDDVKPYIERVANGEPSDVISGGPITMFLRSTGTSGGKQKVFPVNDKYIEKLGYVIALRSLAMSKHFDSGGEQGKAMEFHCTKPPSATPSGLPRDEVVRVGAAFAFVLVRAIDFLEKHWKELCSNIRSGHVSEWITDLEGRNAVSTILRGPDSILADVIEQECSHKSWEGIITRLWPKAKYIDCIITGQMSQYIPMLEFYSNKLPIVSTTYGSSESTFGMNVDPLCKPQDTSYTCAPNISYFEFLPVDHKGDMASIVDLVDVKLGCYYEPVVTNYFGLHRYLIGDILQVTGFYNNTPQFRFVHRKNVVLSVRSETTTEEDILKALNHVGLVLESSDLMLMGFTCYADISTFPGHYVFYWELKAKDVQDVFELEEKVMVKCCSLLEESFDEVYRKNRSKDECIGPLEIRVVQQGTFDSLMEYFISQGGSIAQYKTPICINSSEALAVLENKVLARFFSEKSPPLDS", "length": 525, "header": "tr|Q9C736-1|Q9C736_ARATH Isoform 1 of Auxin-responsive GH3 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9C736-1" }, "isoforms": [ { "isoform_ac": "A0A1P8APW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8APW1/entry", "sequence": { "sequence": "MSDYFKNRPSKCNSEYTSPDQIILCPDHNQSLYCHLLCGLVQRDEVVRVGAAFAFVLVRAIDFLEKHWKELCSNIRSGHVSEWITDLEGRNAVSTILRGPDSILADVIEQECSHKSWEGIITRLWPKAKYIDCIITGQMSQYIPMLEFYSNKLPIVSTTYGSSESTFGMNVDPLCKPQDTSYTCAPNISYFEFLPVDHKGDMASIVDLVDVKLGCYYEPVVTNYFGLHRYLIGDILQVTGFYNNTPQFRFVHRKNVVLSVRSETTTEEDILKALNHVGLVLESSDLMLMGFTCYADISTFPGHYVFYWELKAKDVQDVFELEEKVMVKCCSLLEESFDEVYRKNRSKDECIGPLEIRVVQQGTFDSLMEYFISQGGSIAQYKTPICINSSEALAVLENKVLARFFSEKSPPLDS", "length": 414, "header": "tr|A0A1P8APW1-1|Q9C736_ARATH Computationally mapped isoform of Auxin-responsive GH3 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9C736-1" }, "locus": { "chromosome": "1", "start_pos": 17998795, "end_pos": 18001289, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G48670.2", "url": "https://www.ensemblgenomes.org/id/AT1G48670.2" }, { "database": "Ensembl Peptide", "id": "AT1G48670.2", "url": "https://www.ensemblgenomes.org/id/AT1G48670.2" } ] } }, { "isoform_ac": "Q9C736-1", "url": "https://www.uniprot.org/uniprotkb/Q9C736/entry", "sequence": { "sequence": "MMNPSLNLMDLEELTSNAKQIQEDVLEEILTLNANTEYLHRFLHGSSDKVLFKKNVPVVTYDDVKPYIERVANGEPSDVISGGPITMFLRSTGTSGGKQKVFPVNDKYIEKLGYVIALRSLAMSKHFDSGGEQGKAMEFHCTKPPSATPSGLPRDEVVRVGAAFAFVLVRAIDFLEKHWKELCSNIRSGHVSEWITDLEGRNAVSTILRGPDSILADVIEQECSHKSWEGIITRLWPKAKYIDCIITGQMSQYIPMLEFYSNKLPIVSTTYGSSESTFGMNVDPLCKPQDTSYTCAPNISYFEFLPVDHKGDMASIVDLVDVKLGCYYEPVVTNYFGLHRYLIGDILQVTGFYNNTPQFRFVHRKNVVLSVRSETTTEEDILKALNHVGLVLESSDLMLMGFTCYADISTFPGHYVFYWELKAKDVQDVFELEEKVMVKCCSLLEESFDEVYRKNRSKDECIGPLEIRVVQQGTFDSLMEYFISQGGSIAQYKTPICINSSEALAVLENKVLARFFSEKSPPLDS", "length": 525, "header": "tr|Q9C736-1|Q9C736_ARATH Isoform 1 of Auxin-responsive GH3 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9C736-1" }, "locus": { "chromosome": "1", "start_pos": 17998827, "end_pos": 18001200, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G48670.1", "url": "https://www.ensemblgenomes.org/id/AT1G48670.1" }, { "database": "Ensembl Peptide", "id": "AT1G48670.1", "url": "https://www.ensemblgenomes.org/id/AT1G48670.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 148, "start_aa": "Thr", "end_pos": 148, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr148", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8APW1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8APW1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8APW1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8APW1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G48670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G48670", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ligase activity", "id": "GO:0016874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016874", "evidence": [ { "database": "UniProtKB", "id": "Q9C736", "url": "https://www.uniprot.org/uniprotkb/Q9C736" } ], "pmid": "" }, { "name": "acid-amino acid ligase activity", "id": "GO:0016881", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016881", "evidence": [ { "database": "UniProtKB", "id": "Q9C736", "url": "https://www.uniprot.org/uniprotkb/Q9C736" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9C736", "url": "https://www.uniprot.org/uniprotkb/Q9C736" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9C736", "url": "https://www.uniprot.org/uniprotkb/Q9C736" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 455, "end_pos": 457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 499, "end_pos": 501, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9C736", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C736" }, { "id": "PF23572", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23572" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GH3 C-terminal", "eco_id": "ECO_0000259", "start_pos": 380, "end_pos": 502, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "Q9C736", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C736" }, { "id": "PF23571", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23571" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GH3 middle", "eco_id": "ECO_0000259", "start_pos": 293, "end_pos": 364, "start_aa": "Tyr", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 148 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 298, "end_pos": 300 }, { "start_pos": 354, "end_pos": 356 }, { "start_pos": 455, "end_pos": 457 }, { "start_pos": 499, "end_pos": 501 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q8RY82-1", "uniprot_ac": "Q8RY82", "uniprot_id": "FB121_ARATH", "mass": { "chemical_mass": 43075.0, "monoisotopic_mass": 43075.0 }, "refseq": {}, "gene_names": [ { "name": "T26B15.12", "type": "synonym", "evidence": [ { "id": "Q8RY82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY82" } ] }, { "name": "T26B15_12", "type": "synonym", "evidence": [ { "id": "Q8RY82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY82" } ] } ], "protein_names": [ { "name": "F-box protein At2g32560", "type": "recommended", "evidence": [ { "id": "Q8RY82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY82/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RY82", "url": "https://www.uniprot.org/uniprotkb/Q8RY82" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q8RY82", "locus": {} } ], "crossref": [ { "id": "Q8RY82", "url": "https://alphafold.ebi.ac.uk/entry/Q8RY82", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G32560", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G32560", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "817817", "url": "https://www.ncbi.nlm.nih.gov/gene/817817", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G32560", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G32560", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YTHGSRW", "url": "https://omabrowser.org/oma/group/YTHGSRW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8AXE5", "url": "https://www.orthodb.org/?gene=A0A1P8AXE5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q8RY82", "url": "https://www.orthodb.org/?gene=Q8RY82", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31482", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31482", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31482:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31482:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q8RY82", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q8RY82", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT2G32560", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G32560", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AXE5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXE5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8RY82", "url": "https://www.uniprot.org/uniprotkb/Q8RY82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8RY82-1", "url": "https://www.uniprot.org/uniprotkb/Q8RY82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLYFLITCLSFFFFTKSLSLPPWASETKTLLSFYFIKNPFMNTLHQTKHDPASPVIDQMSVLDLPELALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISSSTYHLDSPHHQTGNLGFAKIISLIRSLSSVFREDKQRRGYASSLPLDSSMSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQARYPPHGRRASAIEKGVTWDRIRAAPIDASPHLLHVSDSLKELKPGDHIEIQWRRNKEFPYGWWYGLVRHLESCDGDHNHCHCHLSETVVLEFNQYTVGSRWRRTMIMRDHKEEGNEEDGFYGGIRKLNCKEEIAMWKRHWPCSILE", "length": 371, "header": "sp|Q8RY82-1|FB121_ARATH Isoform 1 of F-box protein At2g32560 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8RY82-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AXE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXE5/entry", "sequence": { "sequence": "MLLYFLITCLSFFFFTKSLSLPPWASETKTLLSFYFIKNPFMNTLHQTKHDPASPVIDQMSVLDLPELALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISSSTYHLDSPHHQTGNLGFAKIISLIRSLSSVFREDKQRRGYASSLPLDSSMSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQARYPPHGRRASAIEKGVTWDRIRAAPIDASPHLLHVSDSLKELKPGDHIEIQWRRNKEFPYGWWYGLVRHLESCDGDHNHCHCHLSGEFSSSSSSSVVKKWSLGWLF", "length": 331, "header": "tr|A0A1P8AXE5-1|FB121_ARATH Computationally mapped isoform of F-box protein At2g32560 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8RY82-1" }, "locus": { "chromosome": "2", "start_pos": 13824664, "end_pos": 13826989, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G32560.2", "url": "https://www.ensemblgenomes.org/id/AT2G32560.2" }, { "database": "Ensembl Peptide", "id": "AT2G32560.2", "url": "https://www.ensemblgenomes.org/id/AT2G32560.2" } ] } }, { "isoform_ac": "Q8RY82-1", "url": "https://www.uniprot.org/uniprotkb/Q8RY82/entry#Q8RY82-1", "sequence": { "sequence": "MLLYFLITCLSFFFFTKSLSLPPWASETKTLLSFYFIKNPFMNTLHQTKHDPASPVIDQMSVLDLPELALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISSSTYHLDSPHHQTGNLGFAKIISLIRSLSSVFREDKQRRGYASSLPLDSSMSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQARYPPHGRRASAIEKGVTWDRIRAAPIDASPHLLHVSDSLKELKPGDHIEIQWRRNKEFPYGWWYGLVRHLESCDGDHNHCHCHLSETVVLEFNQYTVGSRWRRTMIMRDHKEEGNEEDGFYGGIRKLNCKEEIAMWKRHWPCSILE", "length": 371, "header": "sp|Q8RY82-1|FB121_ARATH Isoform 1 of F-box protein At2g32560 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8RY82-1" }, "locus": { "chromosome": "2", "start_pos": 13824663, "end_pos": 13827260, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G32560.1", "url": "https://www.ensemblgenomes.org/id/AT2G32560.1" }, { "database": "Ensembl Peptide", "id": "AT2G32560.1", "url": "https://www.ensemblgenomes.org/id/AT2G32560.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AXE5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXE5" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q8RY82", "url": "https://www.uniprot.org/uniprotkb/Q8RY82" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AXE5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXE5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G32560", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G32560", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q8RY82", "url": "https://www.uniprot.org/uniprotkb/Q8RY82" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q8RY82-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 371, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q8RY82-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q8RY82" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q8RY82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY82" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 59, "end_pos": 105, "start_aa": "Gln", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q8H1M0-1", "uniprot_ac": "Q8H1M0", "uniprot_id": "FDL16_ARATH", "mass": { "chemical_mass": 51454.0, "monoisotopic_mass": 51454.0 }, "refseq": {}, "gene_names": [ { "name": "T19L18.16", "type": "synonym", "evidence": [ { "id": "Q8H1M0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1M0" } ] }, { "name": "T19L18_16", "type": "synonym", "evidence": [ { "id": "Q8H1M0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1M0" } ] } ], "protein_names": [ { "name": "F-box/FBD/LRR-repeat protein At2g26030", "type": "recommended", "evidence": [ { "id": "Q8H1M0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1M0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1M0", "url": "https://www.uniprot.org/uniprotkb/Q8H1M0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q8H1M0", "locus": {} } ], "crossref": [ { "id": "Q8H1M0", "url": "https://alphafold.ebi.ac.uk/entry/Q8H1M0", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G26030", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G26030", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd22160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "817144", "url": "https://www.ncbi.nlm.nih.gov/gene/817144", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q8H1M0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q8H1M0*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013101", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013101", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G26030", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G26030", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FPLEHIL", "url": "https://omabrowser.org/oma/group/FPLEHIL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07723", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07723", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q8H1M0", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q8H1M0", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT2G26030", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G26030", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AXJ3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXL6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXL6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ITL1", "url": "https://www.uniprot.org/uniprotkb/F4ITL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ITL1-1", "url": "https://www.uniprot.org/uniprotkb/F4ITL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8H1M0", "url": "https://www.uniprot.org/uniprotkb/Q8H1M0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8H1M0-1", "url": "https://www.uniprot.org/uniprotkb/Q8H1M0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNCDRICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVLDLKVSDFPDENYASFIDNFLEFNRKSRMRKFKLKYDEYTYDDDRLAGWVVTTVDRGIQHLDAKGFETNMCVREFMPQNIYKCNTLVSLMLVTVGIENPEFVVSLPSLKIMHLEDVWYYDDPLIMEKIISGCPVLEDFVLIRPIDFCNLDVLQFLRVRSLSLRSFRLTFEYSVSCTYFSVEIDAPRLEYLNFNDDQSDTIVVKNMTSLSMIDIDSEFNVKFGGSRLEPGDLRKRDIIRDFLTAISCVRHMIISRRTLEVLDRYSKLVPIPKFDNLYRLQAAVSRSMLQLLLVFLESCPNLENLILDFTVSTEPEQDGLTYVPQCLLSSLECVEIRELIMGEETGEKLVRYFLKNSVVLKKLILRLEDSSIANQDSDIFKELSTFTKRSRSCEVIIIH", "length": 442, "header": "sp|Q8H1M0-1|FDL16_ARATH Isoform 1 of F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=2 CANONICAL=Q8H1M0-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AXJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXJ3/entry", "sequence": { "sequence": "MHLEDVWYYDDPLIMEKIISGCPVLEDFVLIRPIDFCNLDVLQFLRVRSLSLRSFRLTFEYSVSCTYFSVEIDAPRLEYLNFNDDQSDTIVVKNMTSLSMIDIDSEFNVKFGGSRLEPGDLRKRDIIRDFLTAISCVRHMIISRRTLEVLDRYSKLVPIPKFDNLYRLQAAVSRSMLQLLLVFLESCPNLENLILDFTVSTEPEQDGLTYVPQCLLSSLECVEIRELIMGEETGEKLVRYFLKNSVVLKKLILRLEDSSIANQDSDIFKELSTFTKRSRSCEVIIIH", "length": 287, "header": "tr|A0A1P8AXJ3-1|FDL16_ARATH Computationally mapped isoform of F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8H1M0-1" }, "locus": { "chromosome": "2", "start_pos": 11091334, "end_pos": 11093156, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G26030.5", "url": "https://www.ensemblgenomes.org/id/AT2G26030.5" }, { "database": "Ensembl Peptide", "id": "AT2G26030.5", "url": "https://www.ensemblgenomes.org/id/AT2G26030.5" } ] } }, { "isoform_ac": "A0A1P8AXL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXL6/entry", "sequence": { "sequence": "MNCDRICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVLDLKVSDFPDENYASFIDNFLEFNRKSRMRKFKLKYDEYTYDDDRLAGWVVTTVDRGIQHLDAKGFETNMCVREFMPQNIYKCNTLVSLMLVTVGIENPEFVVSLPSLKIMHLEDVWYYDDPLIMEKIISGCPVLEDFVLIRPIDFCNLDVLQFLRVRSLSLRSFRLTFEYSVSCTYFSVEIDAPRLEYLNFNDDQSDTIVVKNMTSLSMIDIDSEFNVKFGGSRLEPGDLRKRDIIRDFLTAISCVRHMIISRRTLEVLDRYSKLVPIPKFDNLYRLQAAVSRSMLQLLLVFLESCPNLENLILRVHLQDFTVSTEPEQDGLTYVPQCLLSSLECVEIRELIMGEETGEKLVRYFLKNSVVLKKLILRLEDSSIANQDSDIFKELSTFTKRSRSCEVIIIH", "length": 447, "header": "tr|A0A1P8AXL6-1|FDL16_ARATH Computationally mapped isoform of F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8H1M0-1" }, "locus": { "chromosome": "2", "start_pos": 11091330, "end_pos": 11093444, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G26030.4", "url": "https://www.ensemblgenomes.org/id/AT2G26030.4" }, { "database": "Ensembl Peptide", "id": "AT2G26030.4", "url": "https://www.ensemblgenomes.org/id/AT2G26030.4" } ] } }, { "isoform_ac": "F4ITL1-1", "url": "https://www.uniprot.org/uniprotkb/F4ITL1/entry", "sequence": { "sequence": "MRKFKLKYDEYTYDDDRLAGWVVTTVDRGIQHLDAKGFETNMCVREFMPQNIYKCNTLVSLMLVTVGIENPEFVVSLPSLKIMHLEDVWYYDDPLIMEKIISGCPVLEDFVLIRPIDFCNLDVLQFLRVRSLSLRSFRLTFEYSVSCTYFSVEIDAPRLEYLNFNDDQSDTIVVKNMTSLSMIDIDSEFNVKFGGSRLEPGDLRKRDIIRDFLTAISCVRHMIISRRTLEVLDRYSKLVPIPKFDNLYRLQAAVSRSMLQLLLVFLESCPNLENLILDFTVSTEPEQDGLTYVPQCLLSSLECVEIRELIMGEETGEKLVRYFLKNSVVLKKLILRLEDSSIANQDSDIFKELSTFTKRSRSCEVIIIH", "length": 369, "header": "tr|F4ITL1-1|FDL16_ARATH Computationally mapped isoform of F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8H1M0-1" }, "locus": { "chromosome": "2", "start_pos": 11091330, "end_pos": 11093444, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G26030.2", "url": "https://www.ensemblgenomes.org/id/AT2G26030.2" }, { "database": "Ensembl Peptide", "id": "AT2G26030.2", "url": "https://www.ensemblgenomes.org/id/AT2G26030.2" } ] } }, { "isoform_ac": "Q8H1M0-1", "url": "https://www.uniprot.org/uniprotkb/Q8H1M0/entry#Q8H1M0-1", "sequence": { "sequence": "MNCDRICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVLDLKVSDFPDENYASFIDNFLEFNRKSRMRKFKLKYDEYTYDDDRLAGWVVTTVDRGIQHLDAKGFETNMCVREFMPQNIYKCNTLVSLMLVTVGIENPEFVVSLPSLKIMHLEDVWYYDDPLIMEKIISGCPVLEDFVLIRPIDFCNLDVLQFLRVRSLSLRSFRLTFEYSVSCTYFSVEIDAPRLEYLNFNDDQSDTIVVKNMTSLSMIDIDSEFNVKFGGSRLEPGDLRKRDIIRDFLTAISCVRHMIISRRTLEVLDRYSKLVPIPKFDNLYRLQAAVSRSMLQLLLVFLESCPNLENLILDFTVSTEPEQDGLTYVPQCLLSSLECVEIRELIMGEETGEKLVRYFLKNSVVLKKLILRLEDSSIANQDSDIFKELSTFTKRSRSCEVIIIH", "length": 442, "header": "sp|Q8H1M0-1|FDL16_ARATH Isoform 1 of F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=2 CANONICAL=Q8H1M0-1" }, "locus": { "chromosome": "2", "start_pos": 11091330, "end_pos": 11093444, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G26030.1", "url": "https://www.ensemblgenomes.org/id/AT2G26030.1" }, { "database": "Ensembl Peptide", "id": "AT2G26030.1", "url": "https://www.ensemblgenomes.org/id/AT2G26030.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AXJ3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXJ3" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2 reveals numerous transcript variants.", "journal": "Plant Physiol.", "date": "2005", "authors": "Xiao Yong-Li, Smith Shannon R, Ishmael Nadeeza, Redman Julia C, Kumar Nihkil, Monaghan Erin L, Ayele Mulu, Haas Brian J, Wu Hank C, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q8H1M0", "url": "https://www.uniprot.org/uniprotkb/Q8H1M0" } ], "reference": [ { "type": "PubMed", "id": "16244158", "url": "https://glygen.org/publication/PubMed/16244158" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AXJ3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXJ3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G26030", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G26030", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q8H1M0", "url": "https://www.uniprot.org/uniprotkb/Q8H1M0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q8H1M0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 442, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q8H1M0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q8H1M0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q8H1M0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1M0" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 3, "end_pos": 49, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], 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"https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G43260", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G43260", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR31672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31672:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08268", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08268", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q8S8Q9", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q8S8Q9", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT2G43260", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G43260", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": 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17983506, "end_pos": 17985124, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G43260.1", "url": "https://www.ensemblgenomes.org/id/AT2G43260.1" }, { "database": "Ensembl Peptide", "id": "AT2G43260.1", "url": "https://www.ensemblgenomes.org/id/AT2G43260.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 387, "end_pos": 387, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8S8Q9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8Q9" } ], "site_lbl": "Thr387" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AYY1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AYY1" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Functional annotation of a full-length Arabidopsis cDNA collection.", "journal": "Science", "date": "2002", "authors": "Seki Motoaki, Narusaka Mari, Kamiya Asako, Ishida Junko, Satou Masakazu, Sakurai Tetsuya, Nakajima Maiko, Enju Akiko, Akiyama Kenji, Oono Youko, Muramatsu Masami, Hayashizaki Yoshihide, Kawai Jun, Carninci Piero, Itoh Masayoshi, Ishii Yoshiyuki, Arakawa Takahiro, Shibata Kazuhiro, Shinagawa Akira, Shinozaki Kazuo", "evidence": [ { "database": "UniProtKB", "id": "Q8S8Q9", "url": 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Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AZQ5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZQ5" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AZQ5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZQ5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G46375", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G46375", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q8S8G5", "url": "https://www.uniprot.org/uniprotkb/Q8S8G5" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q8S8G5", "url": "https://www.uniprot.org/uniprotkb/Q8S8G5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], 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"tr|F4HYA5-1|Q9C6F0_ARATH Computationally mapped isoform of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C6F0-1" }, "locus": { "chromosome": "1", "start_pos": 12890423, "end_pos": 12892874, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G35190.2", "url": "https://www.ensemblgenomes.org/id/AT1G35190.2" }, { "database": "Ensembl Peptide", "id": "AT1G35190.2", "url": "https://www.ensemblgenomes.org/id/AT1G35190.2" } ] } }, { "isoform_ac": "Q9C6F0-1", "url": "https://www.uniprot.org/uniprotkb/Q9C6F0/entry", "sequence": { "sequence": "MENHTTMKVSSLNCIDLANDDLNHSVVSLKQACLDCGFFYVINHGISEEFMDDVFEQSKKLFALPLEEKMKVLRNEKHRGYTPVLDELLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIARLLALALDLDVGYFDRTEMLGKPIATMRLLRYQGISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNLGDMLERWSNGFFKSTLHRVLGNGQERYSIPFFVEPNHDCLVECLPTCKSESELPKYPPIKCSTYLTQRYEETHANLSIYHQQT", "length": 329, "header": "tr|Q9C6F0-1|Q9C6F0_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C6F0-1" }, "locus": { "chromosome": "1", "start_pos": 12890404, "end_pos": 12892955, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G35190.1", "url": "https://www.ensemblgenomes.org/id/AT1G35190.1" }, { "database": "Ensembl Peptide", "id": "AT1G35190.1", "url": "https://www.ensemblgenomes.org/id/AT1G35190.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4HYA5", "url": "https://www.uniprot.org/uniprotkb/F4HYA5" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4HYA5", "url": "https://www.uniprot.org/uniprotkb/F4HYA5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G35190", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G35190", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q9VCZ2-1", "protein_name": "Fe2OG dioxygenase domain-containing protein", "gene_name": "Dmel\\CG5346", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MIKTKSSDDKLDTLLSRSVVPIIDLAHCGIEEVPVKSVVNRVGHQLKKALSEKGMALLVNHGISDEKLKTAWDHLDDFVNLPPDIRQHYIRADGDKHGYVSRGQQQRFDGKSPELRHAFNISTLNAQNLPEEPLPGFADHISTLATDFKALASFILQALAVSLDIPHTFFLEKHSHMLSGDHDNMSSLRMLYYPPIVDDEPGQNDVIKGRCQYSYQRCLSNQPDFRPEHNPRDEDDLNEVDGPNGQLFEHKLGNGAVIQCPPHVDYGTFTLLSQDSEGGLEVRLPGSEKWNRVGHLPGSILVNCGEILNIWTQGRYPALQHRVIIPEQETIRARGRHSIAFFCHPDNITTISPTDLPNPDAVQDKACLKQRKKSFKAAKERVYNAYQLIQKKFRDTYSSNNHS", "length": 403 }, "evidence": [ { "id": "Q9C6F0", "url": "https://omabrowser.org/oma/group/Q9C6F0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "Q9C6F0", "url": "https://www.uniprot.org/uniprotkb/Q9C6F0" } ], "pmid": "" }, { "name": "dioxygenase activity", "id": "GO:0051213", "url": 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"categories": [ "Protein" ] }, { "id": "AT1G70860", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G70860", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I6Y8", "url": "https://www.uniprot.org/uniprotkb/F4I6Y8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I6Y8-1", "url": "https://www.uniprot.org/uniprotkb/F4I6Y8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q941R8", "url": "https://www.uniprot.org/uniprotkb/Q941R8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q941R8-1", "url": "https://www.uniprot.org/uniprotkb/Q941R8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEEVSTLVGILETTVDLKSSTEKFHDMFVGRPHNISDVSPSNFQGCELHEGEMGQVGAILFWNYVHDGEAKVVK", "length": 75, "header": "tr|Q941R8-1|Q941R8_ARATH Isoform 1 of Polyketide cyclase/dehydrase and lipid transport superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q941R8-1" }, "isoforms": [ { "isoform_ac": "F4I6Y8-1", "url": "https://www.uniprot.org/uniprotkb/F4I6Y8/entry", "sequence": { "sequence": "MAEEVSTLVGILETTVTPKEGEPGSVAHWHFEYEKINEEVAHPETLLQFAIKVSKEIDEHLFSEE", "length": 65, "header": "tr|F4I6Y8-1|Q941R8_ARATH Computationally mapped isoform of Polyketide cyclase/dehydrase and lipid transport superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q941R8-1" }, "locus": { "chromosome": "1", "start_pos": 26718320, "end_pos": 26718992, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G70860.1", "url": "https://www.ensemblgenomes.org/id/AT1G70860.1" }, { "database": "Ensembl Peptide", "id": "AT1G70860.1", "url": "https://www.ensemblgenomes.org/id/AT1G70860.1" } ] } }, { "isoform_ac": "Q941R8-1", "url": "https://www.uniprot.org/uniprotkb/Q941R8/entry", "sequence": { "sequence": "MAEEVSTLVGILETTVDLKSSTEKFHDMFVGRPHNISDVSPSNFQGCELHEGEMGQVGAILFWNYVHDGEAKVVK", "length": 75, "header": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C711-1", "uniprot_ac": "Q9C711", "uniprot_id": "Q9C711_ARATH", "mass": { "chemical_mass": 45610.0, "monoisotopic_mass": 45610.0 }, "refseq": {}, "gene_names": [ { "name": "F28G11.5", "type": "synonym", "evidence": [ { "id": "Q9C711", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C711" } ] }, { "name": "F28G11_5", "type": "synonym", "evidence": [ { "id": "Q9C711", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C711" } ] } ], "protein_names": [ { "name": "AAR2 protein family", "type": "synonym", "evidence": [ { "id": "Q9C711", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C711/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C711", "url": "https://www.uniprot.org/uniprotkb/Q9C711" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C711", "locus": {} } ], "crossref": [ { "id": "AT1G66510", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G66510", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd13777", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13777", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13778", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13778", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "842969", "url": "https://www.ncbi.nlm.nih.gov/gene/842969", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033647", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033647", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033648", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033648", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038514", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038514", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G66510", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G66510", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VWQSGGL", "url": "https://omabrowser.org/oma/group/VWQSGGL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12689", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12689", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12689:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12689:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20981", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20981", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G66510", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G66510", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IEV7", "url": "https://www.uniprot.org/uniprotkb/F4IEV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IEV7-1", "url": "https://www.uniprot.org/uniprotkb/F4IEV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C711", "url": "https://www.uniprot.org/uniprotkb/Q9C711", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C711-1", "url": "https://www.uniprot.org/uniprotkb/Q9C711-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSEKALELVKHGATLLFLDVPQYTLVGIDTQIFAVGPAFKGIKMIPPGIHFVFYSSSTRDGREFSPTIGFFVDVAPSQVIVRKWNQQDEWLTKVSEEEEERYSQAVRSLEFDKNLGPYNLKQYGEWRHLSNYITKDVVEKFEPVGGEITVTYESAILKGGPKTAMEIALDTQMKKSKFTTSSTEQPKGNRFYYTSIPRIIKHKGMSGQELTSMNLDKTQLLESVLSKEYKDSEDLLLGELQFSFVAFLMGQSLESFMQWKSIVSLLLGCTSAPFQTRSQLFTKFIKVIYHQLKYGLQKENSGPETGIHALLDDSWLASDSFLHFLCKDFFALVEETSVVDGDLLSWTRKFKELLENRLGWEFQKKSAVDGIYFEEDDEYAPVVEMLDESHGEYMDKTT", "length": 399, "header": "tr|Q9C711-1|Q9C711_ARATH Isoform 1 of AAR2 protein family OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C711-1" }, "isoforms": [ { "isoform_ac": "F4IEV7-1", "url": "https://www.uniprot.org/uniprotkb/F4IEV7/entry", "sequence": { "sequence": "MIPPGIHFVFYSSSTRDGREFSPTIGFFVDVAPSQVIVRKWNQQDEWLTKVSEEEEERYSQAVRSLEFDKNLGPYNLKQYGEWRHLSNYITKDVVEKFEPVGGEITVTYESAILKGGPKTAMEIALDTQMKKSKFTTSSTEQPKGNRFYYTSIPRIIKHKGMSGQELTSMNLDKTQLLESVLSKEYKDSEDLLLGELQFSFVAFLMGQSLESFMQWKSIVSLLLGCTSAPFQTRSQLFTKFIKVIYHQLKYGLQKENSGPETGIHALLDDSWLASDSFLHFLCKDFFALVEETSVVDGDLLSWTRKFKELLENRLGWEFQKKSAVDGIYFEEDDEYAPVVEMLDESHGEYMDKTT", "length": 355, "header": "tr|F4IEV7-1|Q9C711_ARATH Computationally mapped isoform of AAR2 protein family OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C711-1" }, "locus": { "chromosome": "1", "start_pos": 24813217, "end_pos": 24816148, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G66510.3", "url": "https://www.ensemblgenomes.org/id/AT1G66510.3" }, { "database": "Ensembl Peptide", "id": "AT1G66510.3", "url": "https://www.ensemblgenomes.org/id/AT1G66510.3" } ] } }, { "isoform_ac": "Q9C711-1", "url": "https://www.uniprot.org/uniprotkb/Q9C711/entry", "sequence": { "sequence": "MDSEKALELVKHGATLLFLDVPQYTLVGIDTQIFAVGPAFKGIKMIPPGIHFVFYSSSTRDGREFSPTIGFFVDVAPSQVIVRKWNQQDEWLTKVSEEEEERYSQAVRSLEFDKNLGPYNLKQYGEWRHLSNYITKDVVEKFEPVGGEITVTYESAILKGGPKTAMEIALDTQMKKSKFTTSSTEQPKGNRFYYTSIPRIIKHKGMSGQELTSMNLDKTQLLESVLSKEYKDSEDLLLGELQFSFVAFLMGQSLESFMQWKSIVSLLLGCTSAPFQTRSQLFTKFIKVIYHQLKYGLQKENSGPETGIHALLDDSWLASDSFLHFLCKDFFALVEETSVVDGDLLSWTRKFKELLENRLGWEFQKKSAVDGIYFEEDDEYAPVVEMLDESHGEYMDKTT", "length": 399, "header": "tr|Q9C711-1|Q9C711_ARATH Isoform 1 of AAR2 protein family OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C711-1" }, "locus": { "chromosome": "1", "start_pos": 24812793, "end_pos": 24816620, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G66510.2", "url": "https://www.ensemblgenomes.org/id/AT1G66510.2" }, { "database": "Ensembl Peptide", "id": "AT1G66510.2", "url": "https://www.ensemblgenomes.org/id/AT1G66510.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 109, "end_pos": 109, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C711", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C711" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser109" }, { "start_pos": 119, "end_pos": 119, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C711", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C711" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Tyr119" }, { "start_pos": 3, "end_pos": 3, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C711", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C711" } ], "site_lbl": "Ser3" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4IEV7", "url": "https://www.uniprot.org/uniprotkb/F4IEV7" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9C711", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C711" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IEV7", "url": "https://www.uniprot.org/uniprotkb/F4IEV7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G66510", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G66510", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K0P7-1", "protein_name": "Protein AAR2 homolog", "gene_name": "Aar2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVFNQVHKVTHQSLELKGFKETKKESCFWLPSTGLMASMQMDPELAKQLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGVHFLYYSSVDKANPREVGPRMGFFLSLKQRELTVLRWNAVQEEVDLSPAPEAEVEAMRANLPELDQFLGPYPYGTLKKWISLTNFISEATMEKLQPESRQICAFSDVLPVLSMRYTKDRVEQNLPLCGTECRSYQEGLARLPEMKPRAGTEIRFSELPTQMFPAGATPAEITRHSMDLSYALETVLSKQFPGNPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLLCRSETAMVKHHALYVSLISILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSACSVAVEATLRKKAEKFQAHLTKKFRWDFTSEPEDCAPVVVELPENIETA", "length": 420 }, "evidence": [ { "id": "Q9C711", "url": "https://omabrowser.org/oma/group/Q9C711/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1P5Y2-1", "protein_name": "Protein AAR2 homolog", "gene_name": "AAR2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGPQADPELAKRLFFEGAAVVVLGVPEGTEFGIDYNSWTVGPRFRGVKMVPPGVHFVHCSAARTAGGTETGPRAGLFLCLRPRQVRALRWEPGSEELREAAPGEEEALGRDLREMDAFLGPYPYETLKKWISLSSFVGEAAVERLQPESGQISAFSEVLPVRAGRHGRDRAGQKLPPYDAGCGSYAEGVARLPEMRPRAGTEIRFTELPRQTYPDGASPEEITRHSMDLSYALEKVIARRYAGRPQDLLAELQFAFICFLIGNVYDAFEHWKRLLNILCRSEDAIAKYQDLYANLIFVLYHQLNEIPSDFFVDIVSQDNFLTSTLQVFFSYTCNAAVDGALRKKAEKFKAHLTKKFKWDFDAEPDDCAPVVVELPEGVLTD", "length": 382 }, "evidence": [ { "id": "Q9C711", "url": "https://omabrowser.org/oma/group/Q9C711/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1R8D9-1", "protein_name": "Protein AAR2 homolog", "gene_name": "aar2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAGTDMDPEVARGLFEEGATLVLLGVPEGTELGLDYKTWTLGPRFRGVKMIPPGLHFLHYCSVSTNGGCGEISPKTGLFLSLKPRQVLVAHWNKSADDLEISQNSEEVERVRGNLKELDRYLGPYPYDTLRKWVSLTDRLSQEVAVALQPLSGRVCAFSDVIPELQLTHTKDRVQQNLSRNDQECQSMKEGLDRLPRMKQREGTELRFSSIPKQAYPPGATPAQITQYSMDRSYILNAVLERHYKEQPLNVLGELQFAFVCFLVGNVYEAFEHWKSLLALLCRSEEAMKDRKELYLGLIAVLYHQLGEIPPDFFVDIVSQSNFLTSTLQDFFQFASSPGVDSTLRKRAEKFKVHLTKKFRWDFDADLDDCAPVVVELPDGVTVD", "length": 384 }, "evidence": [ { "id": "Q9C711", "url": "https://omabrowser.org/oma/group/Q9C711/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1S484-1", "protein_name": "Protein AAR2 homolog", "gene_name": "AAR2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATMQMDPELAKRLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSSVDKANPREMGPRMGFFLSLQQRGLMVLRWNAVREEVDLSPAPEAEVEAMRANLQELDQFLGPYPYATLKKWISLTSFISETTVEKLQPESRHICAFSEVLPVLSMKHTKDRVGQNLPRCGTECKSYQEGLARLPEMKPRAGTEIRFSELPTQMFPAGATPAEITRHSMDLSYALETVLSKHFPNSPQDVLGELQFAFVCFLLGNVYEAFEHWKQLLNLLCRSEEAMVKHHTLYINLISILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSACSVAVDATLRQKAEKFQAHLTKKFRWDFAAEPEDCAPVVVELPEGVGTG", "length": 384 }, "evidence": [ { "id": "Q9C711", "url": "https://omabrowser.org/oma/group/Q9C711/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "G3GXV6-1", "protein_name": "Protein AAR2 homolog", "gene_name": "Aar2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASMQMDPELAKQLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSSVDKANPREVGPRMGFFLSLKQRGLTVLRWNAVQEEVDLSPAPEAEVEAMRANLPELDQFLGPYPYATLKKWISLTSFINEATMEKLQPESRQICAFSDVLPVLSMKHTKDRVEQNLPLCGTECKSYQEGLARLPEMKPRAGTEIRFSELPAQMFPAGATPAEITRHSMDLSYALETVLSKQFPCNPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLLCRSEAAMVKHHTLYVSLISILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSACSIAVDATLRKKAEKFQAHLTKKFRWDFASEPEDCAPVVVELPEGIETG", "length": 384 }, "evidence": [ { "id": "Q9C711", "url": "https://omabrowser.org/oma/group/Q9C711/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q08DJ7-1", "protein_name": "Protein AAR2 homolog", "gene_name": "AAR2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAMQMDPELARRLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSSVDKANPREVGPRMGFFLNLQQRGLKVLRWDAAREEVDLSPAPEAEVEAMRANLQELDQFLGPYPYTTLKKWISLTNFISEATVEKLQPESRQICAFSEVLPVLSMRHTKDRVGQNLPRCGAECKSYQEGLARLPEMKPRAGTEIRFSELPTQMFPAGATPAEITRHSMDLSYALETVLSKQFPCSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLLCRSEEAMVKHHSLYVNLISILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSARSVAVDATLRQKAERFQAHLTKKFRWDFEAEPEDCAPVVVELPDGVGTG", "length": 384 }, "evidence": [ { "id": "Q9C711", "url": "https://omabrowser.org/oma/group/Q9C711/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54R71-1", "protein_name": "Protein AAR2 homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNEKARELNEKYATLLILDVPEGSTIGIDNKVWTSGPMFKGVKMIPPGVHMFHCTSSNEYGDSVLISSSFIWVNEINNNKKNNNNNNNKDNYVGEETNGSQQVFIKRWNKEEEDFFPDQSITEQEIQSYTYAVRNFEFDKNLAPYPFDGTQIQWNLLTSHITKSLLDRILPISNIINGDSCSYDQQQNSASSKKEKKLLNDLDLKLKQFNESRGSPSTSSTTTTTTTTTTTSSTTNNSKSKNWGVPYFSKIPKNPIIQNSTATTTTGNNSIDISNLSKWNIDKSECIEFIINKYYKDNEMDLLGEIEFCFVLFIFGMTWSGFQQWKELVTLFLSCDELVLKKPILFIEFFKILKNQLQEAPNDMFESELSNRVFIKPLLKQFIESVYNPEFTNLEQLSPIQLQLFKTIIDLKNYVSNKFNWNLNLFNQINFNNNYNENNNKPFGIKKEYNENNKNKDDDDDEDDDDDEEEDNNNNNNNSNEKSINYQQQNNYDNEDYDSEDDEYKPVLVMDTDMNYL", "length": 518 }, "evidence": [ { "id": "Q9C711", "url": "https://omabrowser.org/oma/group/Q9C711/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9VEA6-1", "protein_name": "Protein AAR2 homolog", "gene_name": "Dmel\\CG12320", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNKDNSSMKMDPQLALRLLADGGVLVIAGVPEGTEFGIDLCAYTIGPDFRGVKMIPPGVHYVWCSSRGPYGDAAPRVGFVHFFHPNEIVVREWDHELEELRPRRIAEPEVERDRIRKNLAQLERVLAPYDYRYVVQWKELTGSVTESCVDRCRPTEGTIRTNIELQSCPDADRPRGGAATVSISRRNAAARILLDESELLPDLKPVEGTAPRFTTVPLRVPQDALPADVSRHALDCIDAVDKLLEGFETADGLIEELQLAYAFFLVGYSVESLAHWRKLLGLLAHSQTAVTKHKLTYMKYSEVLAHQLPHLPEELMVPGPHNTVYKDVRELLVNLHAGGLSVSAERLTKRLEKKLGWEFEGLLDEDPEDQPVVIELPEA", "length": 379 }, "evidence": [ { "id": "Q9C711", "url": "https://omabrowser.org/oma/group/Q9C711/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y312-1", "protein_name": "Protein AAR2 homolog", "gene_name": "AAR2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAVQMDPELAKRLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSSVDKANPKEVGPRMGFFLSLHQRGLTVLRWSTLREEVDLSPAPESEVEAMRANLQELDQFLGPYPYATLKKWISLTNFISEATVEKLQPENRQICAFSDVLPVLSMKHTKDRVGQNLPRCGIECKSYQEGLARLPEMKPRAGTEIRFSELPTQMFPEGATPAEITKHSMDLSYALETVLNKQFPSSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLLCRSEAAMMKHHTLYINLISILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSACSIAVDATLRKKAEKFQAHLTKKFRWDFAAEPEDCAPVVVELPEGIEMG", "length": 384 }, "evidence": [ { "id": "Q9C711", "url": "https://omabrowser.org/oma/group/Q9C711/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spliceosomal tri-snRNP complex assembly", "id": "GO:0000244", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000244", "evidence": [ { "database": "UniProtKB", "id": "Q9C711", "url": "https://www.uniprot.org/uniprotkb/Q9C711" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "microprocessor complex", "id": "GO:0070877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070877", "evidence": [ { "database": "UniProtKB", "id": "Q9C711", "url": "https://www.uniprot.org/uniprotkb/Q9C711" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9C711", "url": "https://www.uniprot.org/uniprotkb/Q9C711" } ], "pmid": "" }, { "name": "nuclear dicing body", "id": "GO:0010445", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010445", "evidence": [ { "database": "UniProtKB", "id": "Q9C711", "url": "https://www.uniprot.org/uniprotkb/Q9C711" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9C711", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C711" }, { "id": "PF05282", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05282" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AAR2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 194, "end_pos": 364, "start_aa": "Tyr", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "Q9C711", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C711" }, { "id": "PF20981", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20981" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AAR2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 144, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 3, 109, 119 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K9Y3-1", "uniprot_ac": "F4K9Y3", "uniprot_id": "F4K9Y3_ARATH", "mass": { "chemical_mass": 10849.0, "monoisotopic_mass": 10849.0 }, "refseq": { "ac": "NP_001190364", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190364" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4K9Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K9Y3/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_001190364", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190364" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K9Y3", "url": "https://www.uniprot.org/uniprotkb/F4K9Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4K9Y3", "locus": {} } ], "crossref": [ { "id": "F4K9Y3", "url": "https://alphafold.ebi.ac.uk/entry/F4K9Y3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G05185", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G05185", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "AT5G22608", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G22608", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "2745428", "url": "https://www.ncbi.nlm.nih.gov/gene/2745428", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "5008219", "url": "https://www.ncbi.nlm.nih.gov/gene/5008219", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT2G05185", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G05185", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ath:AT5G22608", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22608", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001190364", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190364", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G05185", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G05185", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "AT5G22608", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G22608", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IGB0", "url": "https://www.uniprot.org/uniprotkb/F4IGB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IGB0-1", "url": "https://www.uniprot.org/uniprotkb/F4IGB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K9Y3", "url": "https://www.uniprot.org/uniprotkb/F4K9Y3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K9Y3-1", "url": "https://www.uniprot.org/uniprotkb/F4K9Y3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q3EC64", "url": "https://www.uniprot.org/uniprotkb/Q3EC64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q3EC64-1", "url": "https://www.uniprot.org/uniprotkb/Q3EC64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCKSQIFPILLSGSTSKKYRISQHSSHSSDSSYSDASRKQLYNLREPERCSGNLKARSFQGHKDHLLVPCWLMGNCFQSWLFAGLLPSGSVLVNWL", "length": 96, "header": "tr|F4K9Y3-1|F4K9Y3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K9Y3-1" }, "isoforms": [ { "isoform_ac": "F4IGB0-1", "url": "https://www.uniprot.org/uniprotkb/F4IGB0/entry", "sequence": { "sequence": "MCKSQIFPILLSGSTSKKYRISQHSSHSSDSSYSDASRPERCSGNLKARSFQGHKDHLLVPCWLMGNCFQSWLFAVATPFML", "length": 82, "header": "tr|F4IGB0-1|F4K9Y3_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4K9Y3-1" }, "locus": { "chromosome": "5", "start_pos": 7513138, "end_pos": 7514546, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22608.3", "url": "https://www.ensemblgenomes.org/id/AT5G22608.3" }, { "database": "Ensembl Peptide", "id": "AT5G22608.3", "url": "https://www.ensemblgenomes.org/id/AT5G22608.3" } ] } }, { "isoform_ac": "F4K9Y3-1", "url": "https://www.uniprot.org/uniprotkb/F4K9Y3/entry", "sequence": { "sequence": "MCKSQIFPILLSGSTSKKYRISQHSSHSSDSSYSDASRKQLYNLREPERCSGNLKARSFQGHKDHLLVPCWLMGNCFQSWLFAGLLPSGSVLVNWL", "length": 96, "header": "tr|F4K9Y3-1|F4K9Y3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K9Y3-1" }, "locus": { "chromosome": "5", "start_pos": 7513173, "end_pos": 7514453, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22608.2", "url": "https://www.ensemblgenomes.org/id/AT5G22608.2" }, { "database": "Ensembl Peptide", "id": "AT5G22608.2", "url": "https://www.ensemblgenomes.org/id/AT5G22608.2" } ] } }, { "isoform_ac": "Q3EC64-1", "url": "https://www.uniprot.org/uniprotkb/Q3EC64/entry", "sequence": { "sequence": "MCKSQIFPILLSGSTSKKYRISQHSSHSSDSSYSDASRPERCSGNLKARSFQGHKDHLLVPCWLMGNCFQSWLFAGLLPSGSVLVNWL", "length": 88, "header": "tr|Q3EC64-1|F4K9Y3_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K9Y3-1" }, "locus": { "chromosome": "5", "start_pos": 7513069, "end_pos": 7514560, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22608.1", "url": "https://www.ensemblgenomes.org/id/AT5G22608.1" }, { "database": "Ensembl Peptide", "id": "AT5G22608.1", "url": "https://www.ensemblgenomes.org/id/AT5G22608.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "Q3EC64", "url": "https://www.uniprot.org/uniprotkb/Q3EC64" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, 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"MTILAGLIRRRFSRLVPVQLNYGFEPSRILFNPSQGRTRLLSGEAESNRNEFPVENAYDILNVSETSSIAEIKASFRRLAKETHPDLIESKKDPSNSRRFVQILAAYEILSDSEKRAHYDRYLLSRRMVMKKHSGQGYMIHRYKTGLTLSQEMEVVEWLKWYREAIHDIVLEKRVANGTGYLDELEEDFYSAIRAAYFGPDVESVELLPDCFEAEERSVYDTREVLHLVSGRDLFGMVSLVDNFLELSSACSKKLALSSFMDSDLGQAVEKGNNDMMSAERIGLQISHIQSSRSKNHVSDAYKDIQLHVSGRVVATAIRVPPKGYHEKKQIEGDHDLIHVFLNSDEGSNHGTESPPGNESGARLLVGTISGLGTIPDEGSCYVYDGNGAKTHVIMKHRTFLVRHLHWYKIGEKVSICECRCSRAKLPPSKFWLFEPRCGLHDVGGWYVETYGKDKKSRTVLAQRFWDGLEEGSTLDGRLHPGIYLLTLAYRTLDLEDEKRRKRSILEILEARLSKTLDWCKELVRRKGLGT", "length": 531, "header": "tr|F4JS27-1|F4JS27_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JS27-1" }, "locus": { "chromosome": "4", "start_pos": 17619127, "end_pos": 17621596, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G37480.1", "url": "https://www.ensemblgenomes.org/id/AT4G37480.1" }, { "database": "Ensembl Peptide", "id": "AT4G37480.1", "url": 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Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JS27", "url": "https://www.uniprot.org/uniprotkb/F4JS27" } ], "reference": [ { "type": 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"annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JS27-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 531, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JS27-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JS27" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JS27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JS27" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 56, "end_pos": 123, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JS55-1", "uniprot_ac": "F4JS55", "uniprot_id": "F4JS55_ARATH", "mass": { "chemical_mass": 18786.0, "monoisotopic_mass": 18786.0 }, "refseq": { "ac": "NP_680772", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680772" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4JS55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JS55/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_680772", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680772" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JS55", "url": "https://www.uniprot.org/uniprotkb/F4JS55" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JS55", "locus": {} } ], "crossref": [ { "id": "F4JS55", "url": "https://alphafold.ebi.ac.uk/entry/F4JS55", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G37685", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G37685", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "829923", "url": 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"MDMLWHKSSLFLELLHYLLMKLSKLKEKDKMKPSKGKTPFLLLVQILEVLNKERNGRALLANFAEEWSRLETAFKHVRGVFEFRFKGYKSVGKETLTDLFEGLSKLRRGYWSDSVGFFEEENGRDKCKCCMNCLKATHFNNVKVSYKALQTEVTAGSASGFNG", "length": 163, "header": "tr|F4JS55-1|F4JS55_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JS55-1" }, "isoforms": [ { "isoform_ac": "F4JS55-1", "url": "https://www.uniprot.org/uniprotkb/F4JS55/entry", "sequence": { "sequence": "MDMLWHKSSLFLELLHYLLMKLSKLKEKDKMKPSKGKTPFLLLVQILEVLNKERNGRALLANFAEEWSRLETAFKHVRGVFEFRFKGYKSVGKETLTDLFEGLSKLRRGYWSDSVGFFEEENGRDKCKCCMNCLKATHFNNVKVSYKALQTEVTAGSASGFNG", "length": 163, "header": "tr|F4JS55-1|F4JS55_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JS55-1" }, "locus": { "chromosome": "4", "start_pos": 17705049, "end_pos": 17706089, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G37685.1", "url": "https://www.ensemblgenomes.org/id/AT4G37685.1" }, { "database": "Ensembl Peptide", "id": "AT4G37685.1", "url": "https://www.ensemblgenomes.org/id/AT4G37685.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JS55", "url": 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Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, 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"IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044285", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044285", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G18905", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G18905", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CFVPRGV", "url": "https://omabrowser.org/oma/group/CFVPRGV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14091", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14091", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14091:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14091:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001190765", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190765", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G18905", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G18905", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JSC0", "url": "https://www.uniprot.org/uniprotkb/F4JSC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JSC0-1", "url": "https://www.uniprot.org/uniprotkb/F4JSC0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MITAVSWIPKGNLKAVPDVAEPPSKEELKELIESGAFARNVEGSNEDEEEEIEEDGEEISEVDHAKAVAEALGKSSKSKAVSSSMEVDEVSQGLKELDMDNYDEEDDEIELFSSGMGDLYYPSNEMDPYLKDVDDEDDEEDIDDTTVKPTDSVIICARNEDDVSHLEVYLYEESSGSPNMYVHHHIIIPEFPLCTAWLDCPLKGGEKGNFVAIGSKDTPTIEIWDLDVRDEVLPCIQLGGIEEMIVSKKKKSKKQKPVCASNSSISSSSMASSHTESVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEVLLSGSFDQTVVMKDGRQPSHSGFKWSVMSDVESLAWDPHCEHSFVVSLEDGTVKGFDIRAAQSGSDSDLNPTYTIQAHAQDRGVSSISYNISTPNLLATGSMDKSVKLWDLSNNEPSCIATHQPNAGAVFSISFAVDNPFLLAIGGSKGELHVWDTLLDANVARKYGSNRS", "length": 504, "header": "tr|F4JSC0-1|F4JSC0_ARATH Isoform 1 of Transducin/WD40 repeat-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSC0-1" }, "isoforms": [ { "isoform_ac": "F4JSC0-1", "url": "https://www.uniprot.org/uniprotkb/F4JSC0/entry", "sequence": { "sequence": "MITAVSWIPKGNLKAVPDVAEPPSKEELKELIESGAFARNVEGSNEDEEEEIEEDGEEISEVDHAKAVAEALGKSSKSKAVSSSMEVDEVSQGLKELDMDNYDEEDDEIELFSSGMGDLYYPSNEMDPYLKDVDDEDDEEDIDDTTVKPTDSVIICARNEDDVSHLEVYLYEESSGSPNMYVHHHIIIPEFPLCTAWLDCPLKGGEKGNFVAIGSKDTPTIEIWDLDVRDEVLPCIQLGGIEEMIVSKKKKSKKQKPVCASNSSISSSSMASSHTESVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEVLLSGSFDQTVVMKDGRQPSHSGFKWSVMSDVESLAWDPHCEHSFVVSLEDGTVKGFDIRAAQSGSDSDLNPTYTIQAHAQDRGVSSISYNISTPNLLATGSMDKSVKLWDLSNNEPSCIATHQPNAGAVFSISFAVDNPFLLAIGGSKGELHVWDTLLDANVARKYGSNRS", "length": 504, "header": "tr|F4JSC0-1|F4JSC0_ARATH Isoform 1 of Transducin/WD40 repeat-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSC0-1" }, "locus": { "chromosome": "4", "start_pos": 10359896, "end_pos": 10363240, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G18905.2", "url": "https://www.ensemblgenomes.org/id/AT4G18905.2" }, { "database": "Ensembl Peptide", "id": "AT4G18905.2", "url": "https://www.ensemblgenomes.org/id/AT4G18905.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JSC0", "url": "https://www.uniprot.org/uniprotkb/F4JSC0" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "F4JSC0", "url": "https://www.uniprot.org/uniprotkb/F4JSC0" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "F4JSC0", "url": "https://www.uniprot.org/uniprotkb/F4JSC0" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "F4JSC0", "url": "https://www.uniprot.org/uniprotkb/F4JSC0" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JSC0", "url": "https://www.uniprot.org/uniprotkb/F4JSC0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G18905", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G18905", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LFY1-1", "protein_name": "Periodic tryptophan protein 1 homolog", "gene_name": "Pwp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNRSRQVTCVAWVRRGVAKETPDKVELSKEEVKRLIAEAKEKLQEEGGSEEEEVGSPSEDGMQRARVQARPTEPLEDGDPQDDRTLDDDELAEYDLDNYDQEDNPDAETIGESLLGLTVYGSNDQDPYVTLKDTEQYEHEDFLIKPTDNLIVCGRAEQEQCNLEVHVYNQEEESFYVHHDILLSAYPLSVEWLNFDPSPDAATGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKKKKKKGKKSSSAEGHTDAVLDLSWNKTVRNVLASASADSTVILWDLSVGKPAARLTAHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRDPSQNHRLWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQIKGCLVTASADKFVKIWDILGERPSLIHSRDMKMGVLFCSSCCPDLPFVYAFGGQKEGLRVWDISTVSSVNEAFGRRERLAIGSTKDPWDPLHLAGEDSARKTTGKA", "length": 502 }, "evidence": [ { "id": "F4JSC0", "url": "https://omabrowser.org/oma/group/F4JSC0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1Z8D0-1", "protein_name": "Periodic tryptophan protein 1 homolog", "gene_name": "nclb", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAEEGPPEPSIDFVPALCFVPRGVAKDRPDKIVLTQAELARIIGDTQQELDEESDDDAEEGENAEEDQNDMDVDDHADANSENRDPQDEFQFQEYDNEANANVTSLANIVDAGEQIPDEDEDSEAEDEVIKPSDNLILVGHVQDDAASMEVWVFNQEEEALYTHHDFLLPSFPLCIEWMNHDAGSEKAGNMCAIGCMDPIITVWDLDIQDAIEPTFKLGSKGSRKQNKEQYGHKDAVLDLSWNTNFEHILASGSVDQTVILWDMDEGQPHTTITAFGKQIQSLEFHPQEAQSILTGCADGYVRLFDCRDAEGVNSSSIEWKVDGEVEKVLWHPTQTDYFIVGTNDGTLHYADKRSPGQLLWSVKAHNEEISGVCFNNQKPNLLTSTSTEGTLKVWNFDGTEAKHVYEHEFNMGRLQCMRQCPEDPYTLAFGGEKPPRCAIFNIKNSIAVRRTFGIPDAE", "length": 459 }, "evidence": [ { "id": "F4JSC0", "url": "https://omabrowser.org/oma/group/F4JSC0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "F1NYF5-1", "protein_name": "Periodic tryptophan protein 1 homolog", "gene_name": "PWP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSCPVTCAAWVRRGVAKETPDKVQLSREELRRLVGEARGRLREGSDGSDEEDQGQAADGMEVAMADRAESPPDNEEQEEGAEKLTDDELAEYDLDKYDEEEGGGDTKLGETLAGLAVYGSNDQDPYITLKNTDQYEQEDFLIKPNDNLVLCGRVDKDYCSLEVHVYNHEEDSFYVHHDIILPAYPLSLEWLNFDPNPEESSGNYVAVGNMTPVIDIWDLDIVDCLEPVFSLGSKKEKKKKKKGKKGLPQEGTVEGHADAVLDLSWNKQSRNVLASASADSTVILWDMSVGKPAASLTLHTDKVQTLQFHPFETQTLISGSYDKSAVLYDCRSPQDNHRIWRFSGQVERVTWNHFSPCNFLASTEDGFVYCLDARSDKPLFTLKAHDEEVSGLQLSSQVKGCLVTSSADKYVKIWDILGGKPSLIHSRDMKMGVLFCAACCPDFPFVFAFGGEREGLRVWDISSISAVNEVFGNRERLVLAGANSVACSSLAGSSSNSSETAMES", "length": 504 }, "evidence": [ { "id": "F4JSC0", "url": "https://omabrowser.org/oma/group/F4JSC0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P21304-1", "protein_name": "Periodic tryptophan protein 1", "gene_name": "PWP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MISATNWVPRGFSSEFPEKYVLDDEEVERINQLAQLNLDDAKATLEEAEGESGVEDDAATGSSNKLKDQLDIDDDLKEYNLEEYDDEEIADNEGGKDVSMFPGLSNDSDVKFHEGEKGEDPYISLPNQEDSQEEKQELQVYPSDNLVLAARTEDDVSYLDIYVYDDGAGFHSSDIPVEEGDEADPDVARGLVRDPALYVHHDLMLPAFPLCVEWLDYKVGSNSEEAANYAAIGTFDPQIEIWNLDCVDKAFPDMILGEPLDNSMVSLKSKKKKKKSKTGHITTHHTDAVLSMAHNKYFRSVLASTSADHTVKLWDLNSGNAARSLASIHSNKNVSSSEWHMLNGSILLTGGYDSRVALTDVRISDESQMSKYWSAMAGEEIETVTFASENIILCGTDSGNVYSFDIRNNENRKPVWTLKAHDAGISTLCSNKFIPGMMSTGAMGEKTVKLWKFPLDDATNTKGPSMVLSRDFDVGNVLTSSFAPDIEVAGTMVIGGVNKVLKLWDVFTNRSVRKSFKSELENVQARAKEEAQKIGKSSRIARKYTSNDNPDTVITIDDQGEDEEEREGGDEHDDMA", "length": 576 }, "evidence": [ { "id": "F4JSC0", "url": "https://omabrowser.org/oma/group/F4JSC0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q13610-1", "protein_name": "Periodic tryptophan protein 1 homolog", "gene_name": "PWP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQEEGGGSDEEETGSPSEDGMQSARTQARPREPLEDGDPEDDRTLDDDELAEYDLDKYDEEGDPDAETLGESLLGLTVYGSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKKKKKKGKKSSSAEGHTDAVLDLSWNKLIRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRSPDESHRMWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQIKGCLVTASADKYVKIWDILGDRPSLVHSRDMKMGVLFCSSCCPDLPFIYAFGGQKEGLRVWDISTVSSVNEAFGRRERLVLGSARNSSISGPFGSRSSDTPMES", "length": 501 }, "evidence": [ { "id": "F4JSC0", "url": "https://omabrowser.org/oma/group/F4JSC0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q2HJ56-1", "protein_name": "Periodic tryptophan protein 1 homolog", "gene_name": "PWP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQEEGGSDEQETGNPSEDGMQSARTQARPREPLEDGDPEDDRTLDDDELAEYDLDKYDEEGDPDAETLGESLLGLTVYGSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKKKKKKGKKNSSADGHTDAVLDLSWNKLVRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRSPEESHRMWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQIKGCLVTASADKYVKIWDILGDRPSLVHSRDMKMGVLFCSSCCPDLPFIYAFGGQKEGLRVWDISTVSSVNEAFGRRERLVLGNARTSSISGPFGNRSSETPMES", "length": 500 }, "evidence": [ { "id": "F4JSC0", "url": "https://omabrowser.org/oma/group/F4JSC0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X0-1", "protein_name": "WD40 repeat-containing protein", "gene_name": "pwp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSIQWVPRGASNPFPKKFDPNGEDMEELNEEEIKAMQEEEEEDRIIEKKFEKGVPSVMNDKEKDFYKRYNFDDYDSDEGEQDEEERDENDHSRKTEEVGLKFINRAMKGLMFYKDTDSDPYLTNKEEEDIEDIEDVIIRPTDSILVSAIVTGEDDYSHLDIMVYEEECDNLYVHHDIILSSYPLALAWMDQNPINPQEKGSFMAVGTFEPSIEIWDLDVVDNLIPTVILGGKEEDSADPMKKPSAKKRGGKHNKFKEGSHRDGVMSLSWNSHQRNVLASGSSDNTVKVWDITTQQCLNTFTHHKDKVSCLHWNSHEKTALLIGSHDKHVSILDVRAPDSAYKWSVKGEVESLSWNPHNPKEFIVGTDDGRLLCYDATLGTAAAPVWSVQASQKGSVSCFSYCPGQVGFFATGSSDHTVKLWNLETSSNKPTLIESKNLGQEIFTLSFFENSPFLLAVGSETQRPNVIDTKRFISVQNSFGIARPENSKEPVFITNNKNKNNTEEEEEEIEEDTDSDHNDDEIEEEQEEEEQEKEITPPPKQTKKLNNTKNNKKDVKNRKKVGDSDEE", "length": 569 }, "evidence": [ { "id": "F4JSC0", "url": "https://omabrowser.org/oma/group/F4JSC0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q99LL5-1", "protein_name": "Periodic tryptophan protein 1 homolog", "gene_name": "Pwp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNRSRQVTCVAWVRRGVAKETPDKVELSKEEVNRLIAEAKGKLQEEGGSEEEEAGNPSEDGMQSGPTQAPPRESLEDGDPQDDRTLDDDELAGYDLDNYDEEDNPDAETIGESLLGLTVYGSNDQDPYVTLKDTEQYEHEDFLIKPTDNLIVCGRAEQEQCNLEVHVYNQEEESFYVHHDILLSAYPLSVEWLNFDPSPDASTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKKKKKKGKKSSSAEGHTDAVLDLSWNKTVRNVLASASADSTVVLWDLSVGKSVARLTAHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRDPSQNHRQWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQIKGCLVTASADKFVKIWDILGDRPSLIHSRDMKMGVLFCSSCCPDLPFVYAFGGQKEGLRVWDISTVSSVNEAFGRRERLVIGGTKGLSVSGPCGSRSPQQTPMES", "length": 501 }, "evidence": [ { "id": "F4JSC0", "url": "https://omabrowser.org/oma/group/F4JSC0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JSC0", "url": "https://www.uniprot.org/uniprotkb/F4JSC0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "F4JSC0", "url": "https://www.uniprot.org/uniprotkb/F4JSC0" } ], "pmid": "" }, { "name": "positive regulation of transcription of nucleolar large rRNA by RNA polymerase I", "id": "GO:1901838", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901838", "evidence": [ { "database": "UniProtKB", "id": "F4JSC0", "url": "https://www.uniprot.org/uniprotkb/F4JSC0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "histone H4K20me3 reader activity", "id": "GO:1990889", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990889", "evidence": [ { "database": "UniProtKB", "id": "F4JSC0", "url": "https://www.uniprot.org/uniprotkb/F4JSC0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 423, "end_pos": 425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 502, "end_pos": 504, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JSC0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 504, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JSC0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JSC0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { 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"OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47832", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47832", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47832:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47832:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00875", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00875", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_194259", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194259", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G25290", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G25290", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JSJ6", "url": "https://www.uniprot.org/uniprotkb/F4JSJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JSJ6-1", "url": "https://www.uniprot.org/uniprotkb/F4JSJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFLALPHFLHLRLRRNDRKNRCKCCLSSATNEGSTAVVWFKHDLRVDDHPGLLAASKHRAVIPLYVLDRRILSRYTTDTLELAIIALEDLRKTLKKQGSNLMLRYGNAENVIEDLVKEVRAPFVFVEEEVEYHLCEVLDAVKNKLEGVSLSGESPRIVAWRTPFYESQNLTDLPQSWEEFKKLKLPLTLPVPAAKFSSPGSELQWGSVPTLDDLKDYLKESLWEIENSWREMAQASAERVLMERLGNLKESSMEPIVDGSLGKKVDNSVFVTSKRDTVGGGNEVVLNALAGYLRYLEGTSRDDWQEVHARLRDAETRPGASFFKLFGPVLCLGIVSRRSVHYEAIEYEKERNAGFISPFGYSAATVSAATDAVCSMEWYYLLALSRERIDEKRHAIRIWRWKGYLIQYTVVGNEGPAVLLVHGFGAFLEHYRDNVDNIVNSKNRVWTITVLGFGKSEKPNIIYTELLWAELLRDFMAEVVGEPAHCVGNSIGGYFVALMAFLWPALVKSVVLVNSAGNVVPGYSPLPISRERRVPFGAQFGSRLLLFFLQLNVKKLLKDCYPVKPERADDFLVTEMLRASRDPGVVMVLESIFGFDLSLPLNYLLKGFEEKTLVIQGMEDPISDPQKKVALLKELCPAMVIKKVKAGHCPHDEISEEVNPIICEWIVKVTNDDRELKASSSQQLYHSNKQN", "length": 692, "header": "tr|F4JSJ6-1|F4JSJ6_ARATH Isoform 1 of DNA photolyase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSJ6-1" }, "isoforms": [ { "isoform_ac": "F4JSJ6-1", "url": "https://www.uniprot.org/uniprotkb/F4JSJ6/entry", "sequence": { "sequence": "MAFLALPHFLHLRLRRNDRKNRCKCCLSSATNEGSTAVVWFKHDLRVDDHPGLLAASKHRAVIPLYVLDRRILSRYTTDTLELAIIALEDLRKTLKKQGSNLMLRYGNAENVIEDLVKEVRAPFVFVEEEVEYHLCEVLDAVKNKLEGVSLSGESPRIVAWRTPFYESQNLTDLPQSWEEFKKLKLPLTLPVPAAKFSSPGSELQWGSVPTLDDLKDYLKESLWEIENSWREMAQASAERVLMERLGNLKESSMEPIVDGSLGKKVDNSVFVTSKRDTVGGGNEVVLNALAGYLRYLEGTSRDDWQEVHARLRDAETRPGASFFKLFGPVLCLGIVSRRSVHYEAIEYEKERNAGFISPFGYSAATVSAATDAVCSMEWYYLLALSRERIDEKRHAIRIWRWKGYLIQYTVVGNEGPAVLLVHGFGAFLEHYRDNVDNIVNSKNRVWTITVLGFGKSEKPNIIYTELLWAELLRDFMAEVVGEPAHCVGNSIGGYFVALMAFLWPALVKSVVLVNSAGNVVPGYSPLPISRERRVPFGAQFGSRLLLFFLQLNVKKLLKDCYPVKPERADDFLVTEMLRASRDPGVVMVLESIFGFDLSLPLNYLLKGFEEKTLVIQGMEDPISDPQKKVALLKELCPAMVIKKVKAGHCPHDEISEEVNPIICEWIVKVTNDDRELKASSSQQLYHSNKQN", "length": 692, "header": "tr|F4JSJ6-1|F4JSJ6_ARATH Isoform 1 of DNA photolyase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JSJ6-1" }, "locus": { "chromosome": "4", "start_pos": 12941242, "end_pos": 12945052, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G25290.1", "url": "https://www.ensemblgenomes.org/id/AT4G25290.1" }, { "database": "Ensembl Peptide", "id": "AT4G25290.1", "url": "https://www.ensemblgenomes.org/id/AT4G25290.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JSJ6", "url": "https://www.uniprot.org/uniprotkb/F4JSJ6" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JSJ6", "url": "https://www.uniprot.org/uniprotkb/F4JSJ6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G25290", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G25290", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JSJ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 692, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JSJ6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JSJ6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JSJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSJ6" }, { "id": "PS51645", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51645" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Photolyase/cryptochrome alpha/beta", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 166, "start_aa": "Ser", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 170, "end_pos": 172 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JSL7-1", "uniprot_ac": "F4JSL7", "uniprot_id": "F4JSL7_ARATH", "mass": { "chemical_mass": 52026.0, "monoisotopic_mass": 52026.0 }, "refseq": { "ac": "NP_194273", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194273" }, "gene_names": [ { "name": "TRM23", "type": "recommended", "evidence": [ { "id": "F4JSL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSL7" } ] }, { "name": "T30C3.7", "type": "synonym", "evidence": [ { "id": "NP_194273", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194273" }, { "id": "F4JSL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSL7" } ] }, { "name": "TON1 Recruiting Motif 23", "type": "synonym", "evidence": [ { "id": "NP_194273", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194273" }, { "id": "F4JSL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSL7" } ] }, { "name": "TRM23", "type": "synonym", "evidence": [ { "id": "NP_194273", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194273" } ] } ], "protein_names": [ { "name": "DUF3741 domain-containing protein", "type": "recommended", "evidence": [ { "id": "F4JSL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSL7/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_194273", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194273" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JSL7", "url": "https://www.uniprot.org/uniprotkb/F4JSL7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "TRM23", "url": "https://www.uniprot.org/uniprotkb/F4JSL7", "locus": { "chromosome": "CP002687.1", "start_pos": 13000304, "end_pos": 12998361, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "AT4G25430", "url": "https://www.ensemblgenomes.org/id/AT4G25430" } ] } } ], "crossref": [ { "id": "F4JSL7", "url": "https://alphafold.ebi.ac.uk/entry/F4JSL7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G25430", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G25430", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828646", "url": "https://www.ncbi.nlm.nih.gov/gene/828646", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G25430", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G25430", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NRENKHE", "url": "https://omabrowser.org/oma/group/NRENKHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR37751", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37751", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37751:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37751:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14383", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14383", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_194273", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194273", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G25430", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G25430", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JSL7", "url": "https://www.uniprot.org/uniprotkb/F4JSL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JSL7-1", "url": "https://www.uniprot.org/uniprotkb/F4JSL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGREWYNGGRSTCSSKSKKNSNEANGCVTALYHFFHFHHFYFPSRHHHHHQPSIDSPSRTRKGLVAPRNSLDLSEESPLSTNYKLEREGLNISVGGKKSTLRGLLVDTPSHNCNLPRTKTPNVVARLMGLDLLPDNLELTRSPRNGVRGHRLSGNGSGTRSLPASPRISSDSENHRLSLELNRENNKHEEFVRTRLKELKQDEQSPSPRYSGRQIVKQTKKRVTTRKFGMDVTNLLEKKRAGGAAQNRISQKEKTTSTNPAFVLRQYQQPATVITLSKENQQSLRPISGWEKAESKSKFSPHPTPNNRNKQRKVLTPVSTHSRSNRCDLLEKKQCKKIYVTSSAFSATERPRKQMKRAQEPERKADATICSGQKMYKYEKKLPQEPSSSKFYDSNTISPTIINAGETEKDVPGMNKLEEEEERVVSEIERQIVDALVQETVETTSLWGLNANAVSFVRQ", "length": 459, "header": "tr|F4JSL7-1|F4JSL7_ARATH Isoform 1 of DUF3741 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM23 PE=4 SV=1 CANONICAL=F4JSL7-1" }, "isoforms": [ { "isoform_ac": "F4JSL7-1", "url": "https://www.uniprot.org/uniprotkb/F4JSL7/entry", "sequence": { "sequence": "MGREWYNGGRSTCSSKSKKNSNEANGCVTALYHFFHFHHFYFPSRHHHHHQPSIDSPSRTRKGLVAPRNSLDLSEESPLSTNYKLEREGLNISVGGKKSTLRGLLVDTPSHNCNLPRTKTPNVVARLMGLDLLPDNLELTRSPRNGVRGHRLSGNGSGTRSLPASPRISSDSENHRLSLELNRENNKHEEFVRTRLKELKQDEQSPSPRYSGRQIVKQTKKRVTTRKFGMDVTNLLEKKRAGGAAQNRISQKEKTTSTNPAFVLRQYQQPATVITLSKENQQSLRPISGWEKAESKSKFSPHPTPNNRNKQRKVLTPVSTHSRSNRCDLLEKKQCKKIYVTSSAFSATERPRKQMKRAQEPERKADATICSGQKMYKYEKKLPQEPSSSKFYDSNTISPTIINAGETEKDVPGMNKLEEEEERVVSEIERQIVDALVQETVETTSLWGLNANAVSFVRQ", "length": 459, "header": "tr|F4JSL7-1|F4JSL7_ARATH Isoform 1 of DUF3741 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM23 PE=4 SV=1 CANONICAL=F4JSL7-1" }, "locus": { "chromosome": "4", "start_pos": 12998361, "end_pos": 13000304, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G25430.1", "url": "https://www.ensemblgenomes.org/id/AT4G25430.1" }, { "database": "Ensembl Peptide", "id": "AT4G25430.1", "url": "https://www.ensemblgenomes.org/id/AT4G25430.1" } ] } } ], "glycosylation": [], 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Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JSL7", "url": "https://www.uniprot.org/uniprotkb/F4JSL7" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSP1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JSP1", "url": "https://www.uniprot.org/uniprotkb/F4JSP1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ROQH", "url": "https://www.uniprot.org/uniprotkb/F4JSP1", "locus": {} } ], "crossref": [ { "id": "F4JSP1", "url": "https://alphafold.ebi.ac.uk/entry/F4JSP1", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G31530", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G31530", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd05243", "url": 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Classification" ] }, { "id": "PTHR15020:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15020:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13460", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13460", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001190881", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190881", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G31530", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G31530", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JSP1", "url": "https://www.uniprot.org/uniprotkb/F4JSP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JSP1-1", "url": "https://www.uniprot.org/uniprotkb/F4JSP1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATTTNLSFAPPSYSRFAATKSQIRNPLFTSPLPLPSSFFLVRNEASLSSSITPVQAFTEEAVDTSDLASSSSKLVLVVGGTGGVGQLVVASLLKRNIRSRLLLRDLDKATKLFGKQDEYSLQVVKGDTRNAEDLDPSMFEGVTHVICTTGTTAFPSKRWNEENTPEKVDWEGVKNLISALPSSVKRVVLVSSVGVTKSNELPWSIMNLFGVLKYKKMGEDFLRDSGLPFTIIRPGRLTDGPYTSYDLNTLLKATAGERRAVVIGQGDNLVGEVSRLVVAEACIQALDIEFTQGKAYEINSVKVPQTVSLKFEQSGNGDGPGSDPQQWRELFKAAESK", "length": 338, "header": "tr|F4JSP1-1|F4JSP1_ARATH Isoform 1 of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN=ROQH PE=1 SV=1 CANONICAL=F4JSP1-1" }, "isoforms": [ { "isoform_ac": "F4JSP1-1", "url": "https://www.uniprot.org/uniprotkb/F4JSP1/entry", "sequence": { "sequence": "MATTTNLSFAPPSYSRFAATKSQIRNPLFTSPLPLPSSFFLVRNEASLSSSITPVQAFTEEAVDTSDLASSSSKLVLVVGGTGGVGQLVVASLLKRNIRSRLLLRDLDKATKLFGKQDEYSLQVVKGDTRNAEDLDPSMFEGVTHVICTTGTTAFPSKRWNEENTPEKVDWEGVKNLISALPSSVKRVVLVSSVGVTKSNELPWSIMNLFGVLKYKKMGEDFLRDSGLPFTIIRPGRLTDGPYTSYDLNTLLKATAGERRAVVIGQGDNLVGEVSRLVVAEACIQALDIEFTQGKAYEINSVKVPQTVSLKFEQSGNGDGPGSDPQQWRELFKAAESK", "length": 338, "header": "tr|F4JSP1-1|F4JSP1_ARATH Isoform 1 of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN=ROQH PE=1 SV=1 CANONICAL=F4JSP1-1" }, "locus": { "chromosome": "4", "start_pos": 15282230, "end_pos": 15284216, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G31530.2", "url": "https://www.ensemblgenomes.org/id/AT4G31530.2" }, { "database": "Ensembl Peptide", "id": "AT4G31530.2", "url": "https://www.ensemblgenomes.org/id/AT4G31530.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff 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CANONICAL=F4JT39-1" }, "locus": { "chromosome": "4", "start_pos": 7911019, "end_pos": 7912892, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G13600.1", "url": "https://www.ensemblgenomes.org/id/AT4G13600.1" }, { "database": "Ensembl Peptide", "id": "AT4G13600.1", "url": "https://www.ensemblgenomes.org/id/AT4G13600.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 163, "start_aa": "Thr", "end_pos": 163, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr163", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], 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P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, 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"https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JT39", "url": "https://www.uniprot.org/uniprotkb/F4JT39" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G13600", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G13600", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F4JT39", "url": 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"Protein Classification" ] }, { "id": "PTHR46686:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46686:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00534", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00534", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13439", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13439", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G19460", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G19460", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JT73", "url": "https://www.uniprot.org/uniprotkb/F4JT73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JT73-1", "url": "https://www.uniprot.org/uniprotkb/F4JT73-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNPLIEQTEPTQQQIVKKKEKTTMASQTKLKKPNSHFSLCTFLFFTVLFTIPALFLLRTSTCSSSTAAVSSSSSDTNQPPWSGDLQTAQFAWNRLDFSLTNPPPKTLKLAVFSRKWPTGPNPGGMERHAFTLYTALARRGHRVHVFTSPLDQSPETNKIPPVSDQIIYPIIHSHGDAEPGKWRYNKAWELYQEENKKEPFDAVHSESVALPHWIAREVPNLAVSWHGIALESLQSSIYQDLIRKPDEPRSQGFNASLYGAVLPKILDEIRFFHNYAHHIAISDSCGEMLRDVYQIPEKRVHVILNGVDENGFTSDKKLRTLFRSKLGLPENSSAIVLGAAGRLVKDKGHPLLFEAFAKIIQTYSNVYLVVAGSGPWEQRYKELGEKVSILGSLNPNELKGFYNGIDLFVNPTLRPQGLDLTLMEAMLSGKPVMASRYASIKRTIVVNDEFGFMFAPNVEALTAVMEVAVAEGAERLAERGRKCKEYAAEMFTASKMALAYERLFLCINDQKFCIYP", "length": 516, "header": "tr|F4JT73-1|F4JT73_ARATH Isoform 1 of UDP-Glycosyltransferase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JT73-1" }, "isoforms": [ { "isoform_ac": "F4JT73-1", "url": "https://www.uniprot.org/uniprotkb/F4JT73/entry", "sequence": { "sequence": "MNPLIEQTEPTQQQIVKKKEKTTMASQTKLKKPNSHFSLCTFLFFTVLFTIPALFLLRTSTCSSSTAAVSSSSSDTNQPPWSGDLQTAQFAWNRLDFSLTNPPPKTLKLAVFSRKWPTGPNPGGMERHAFTLYTALARRGHRVHVFTSPLDQSPETNKIPPVSDQIIYPIIHSHGDAEPGKWRYNKAWELYQEENKKEPFDAVHSESVALPHWIAREVPNLAVSWHGIALESLQSSIYQDLIRKPDEPRSQGFNASLYGAVLPKILDEIRFFHNYAHHIAISDSCGEMLRDVYQIPEKRVHVILNGVDENGFTSDKKLRTLFRSKLGLPENSSAIVLGAAGRLVKDKGHPLLFEAFAKIIQTYSNVYLVVAGSGPWEQRYKELGEKVSILGSLNPNELKGFYNGIDLFVNPTLRPQGLDLTLMEAMLSGKPVMASRYASIKRTIVVNDEFGFMFAPNVEALTAVMEVAVAEGAERLAERGRKCKEYAAEMFTASKMALAYERLFLCINDQKFCIYP", "length": 516, "header": "tr|F4JT73-1|F4JT73_ARATH Isoform 1 of UDP-Glycosyltransferase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JT73-1" }, "locus": { "chromosome": "4", "start_pos": 10610261, "end_pos": 10612135, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G19460.1", "url": "https://www.ensemblgenomes.org/id/AT4G19460.1" }, { "database": "Ensembl Peptide", "id": "AT4G19460.1", "url": "https://www.ensemblgenomes.org/id/AT4G19460.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JT73", "url": "https://www.uniprot.org/uniprotkb/F4JT73" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JT73", "url": "https://www.uniprot.org/uniprotkb/F4JT73" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G19460", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G19460", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "glycosyltransferase activity", "id": "GO:0016757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016757", "evidence": [ { "database": "UniProtKB", "id": "F4JT73", "url": "https://www.uniprot.org/uniprotkb/F4JT73" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JT73", "url": "https://www.uniprot.org/uniprotkb/F4JT73" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 331, "end_pos": 333, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JT73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JT73" }, { "id": "PF00534", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00534" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl transferase family 1", "eco_id": "ECO_0000259", "start_pos": 331, "end_pos": 484, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "F4JT73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JT73" }, { "id": "PF13439", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13439" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyltransferase subfamily 4-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 122, "end_pos": 309, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 254, "end_pos": 256 }, { "start_pos": 331, "end_pos": 333 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JT86-1", "uniprot_ac": "F4JT86", "uniprot_id": "F4JT86_ARATH", "mass": { "chemical_mass": 26025.0, "monoisotopic_mass": 26025.0 }, "refseq": {}, "gene_names": [ { "name": "F24J7.110", "type": "synonym", "evidence": [ { "id": "F4JT86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JT86" } ] }, { "name": "F24J7_110", "type": "synonym", "evidence": [ { "id": "F4JT86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JT86" } ] } ], "protein_names": [ { "name": "Zinc ion binding / transcription regulator", "type": "synonym", "evidence": [ { "id": "F4JT86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JT86/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JT86", "url": "https://www.uniprot.org/uniprotkb/F4JT86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JT86", "locus": {} } ], "crossref": [ { "id": "F4JT86", "url": "https://alphafold.ebi.ac.uk/entry/F4JT86", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G19550", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G19550", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827697", "url": "https://www.ncbi.nlm.nih.gov/gene/827697", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011665", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011665", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G19550", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G19550", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "INNDTEM", "url": "https://omabrowser.org/oma/group/INNDTEM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4JT85", "url": "https://www.orthodb.org/?gene=F4JT85", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4JT86", "url": "https://www.orthodb.org/?gene=F4JT86", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF07741", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07741", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G19550", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G19550", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JT85", "url": "https://www.uniprot.org/uniprotkb/F4JT85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JT85-1", "url": "https://www.uniprot.org/uniprotkb/F4JT85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JT86", "url": "https://www.uniprot.org/uniprotkb/F4JT86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JT86-1", "url": "https://www.uniprot.org/uniprotkb/F4JT86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATKEFFLLDSLKVILQRTYLISVMLSLYKPQQLFLDCGEPAFFLTCKSITRLVAENLSNNKEFILKKRAWELMNPEYQKGKYRKVTTRKKKDPANKIAPSKKTSATKTESNAETENKKRPSLEINYNVLDKLFDPENSPKRAKLDKPVVVGDQIEYSKQNSEESLLKSQYSEEEEEEAEEPDWNEDYSNEDAYRGNEECYGNENLEFEDLDDDEEDDEGVIW", "length": 223, "header": "tr|F4JT86-1|F4JT86_ARATH Isoform 1 of Zinc ion binding / transcription regulator OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JT86-1" }, "isoforms": [ { "isoform_ac": "F4JT85-1", "url": "https://www.uniprot.org/uniprotkb/F4JT85/entry", "sequence": { "sequence": "MVEKSVKLLARNLKVYGNKGVFPSRQSKGDLAEDLSDISDAEVAENLSNNKEFILKKRAWELMNPEYQKGKYRKVTTRKKKDPANKIAPSKKTSATKTESNAETENKKRPSLEINYNVLDKLFDPENSPKRAKLDKPVVVGDQIEYSKQNSEESLLKSQYSEEEEEEAEEPDWNEDYSNEDAYRGNEECYGNENLEFEDLDDDEEDDEGVIW", "length": 212, "header": "tr|F4JT85-1|F4JT86_ARATH Computationally mapped isoform of Zinc ion binding / transcription regulator OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JT86-1" }, "locus": { "chromosome": "4", "start_pos": 10659253, "end_pos": 10661222, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G19550.1", "url": "https://www.ensemblgenomes.org/id/AT4G19550.1" }, { "database": "Ensembl Peptide", "id": "AT4G19550.1", "url": "https://www.ensemblgenomes.org/id/AT4G19550.1" } ] } }, { "isoform_ac": "F4JT86-1", "url": "https://www.uniprot.org/uniprotkb/F4JT86/entry", "sequence": { "sequence": "MATKEFFLLDSLKVILQRTYLISVMLSLYKPQQLFLDCGEPAFFLTCKSITRLVAENLSNNKEFILKKRAWELMNPEYQKGKYRKVTTRKKKDPANKIAPSKKTSATKTESNAETENKKRPSLEINYNVLDKLFDPENSPKRAKLDKPVVVGDQIEYSKQNSEESLLKSQYSEEEEEEAEEPDWNEDYSNEDAYRGNEECYGNENLEFEDLDDDEEDDEGVIW", "length": 223, "header": "tr|F4JT86-1|F4JT86_ARATH Isoform 1 of Zinc ion binding / transcription regulator OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JT86-1" }, "locus": { "chromosome": "4", "start_pos": 10659253, "end_pos": 10661311, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G19550.2", "url": "https://www.ensemblgenomes.org/id/AT4G19550.2" }, { "database": "Ensembl Peptide", "id": "AT4G19550.2", "url": "https://www.ensemblgenomes.org/id/AT4G19550.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, 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Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, 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"MSRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHKVGDENAPRPWSRLSHKKEEEAKKSSSEGLKDGNAKGGKKRKAEVDDPEFQEFLEVHQRSKSKIWSNDMSIPPAPEETGKEKVLVKKADEQIVSNGVEPKKAKKSSDTEKTKKSKVVAASDDVSDMEYFKSRIKKNLSDSESDNESEDSSEDEAGDDDGKAETDGQDADIRYFPIDGDVEAGGVGKDDDGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPKTFKQKREEQRKASEAGGDTKAWNSLFMRPDTILENIVRVYGVSKSELLDREAEDPAVRLALGETKVIAETKEALAKAGVNVTSLEKFATRNGDEKNRSKHILLVKNLPFASTEKELAQMFGKFGSLDKIILPPTKTMALAVFLEPAEARAALKGMAYKRYKDAPLYLEWAPGNILEPKNLPDTNEERSDIEENGVRRVNLEQQVEIDPDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVLEWANDDNSMEAIRKRSAAKFDEENDNARKRKSSKAVEGKNEV", "length": 816, "header": "tr|F4JT92-1|F4JT92_ARATH Isoform 1 of Nucleotide/nucleic acid binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JT92-1" }, 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Isoform 1 of Nucleotide/nucleic acid binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JT92-1" }, "locus": { "chromosome": "4", "start_pos": 10677202, "end_pos": 10681773, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G19610.1", "url": "https://www.ensemblgenomes.org/id/AT4G19610.1" }, { "database": "Ensembl Peptide", "id": "AT4G19610.1", "url": "https://www.ensemblgenomes.org/id/AT4G19610.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 202, "end_pos": 202, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JT92", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JT92" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser202" }, { "start_pos": 571, "end_pos": 571, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JT92", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JT92" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr571" }, { "start_pos": 576, "end_pos": 576, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JT92", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JT92" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser576" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JT92", "url": "https://www.uniprot.org/uniprotkb/F4JT92" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4JT92", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JT92" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "F4JT92", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JT92" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4JT92", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JT92" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JT92", "url": "https://www.uniprot.org/uniprotkb/F4JT92" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "F4JT92", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JT92" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT4G19610", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G19610", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TXU2-1", "protein_name": "RNA binding motif protein 19", "gene_name": "RBM19", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHFNKSFIDTSRITVEFCKAFGDPTKPRAWSKHAQKSSQSKPPPKDKDAISTEPKKDDKKKKAAGELEKLKDDNEFQEFLSVHQKRTQVATWANDALDAEPSKGKSKPANDYLNFDSDSGQESEEEEDGENSEEEEDGLKPKEPKEPKAAVQKELSDMDYLKSKVVAAESPSSEESEDEAVNCEEGSESEEEGSFAAPAQQDREAAPAKTEKPASQKEPTTPHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNIPVAKAPLKNGAKPWQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASEDANAPESSSYKKKKESKDKANSSSSHNWNTLFMGPNAVADAIAQKYSATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLLDNGVCLDSFSQAAAERSKTVILVKNLPAGTLAAELQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPMGVFSSPIPQKEEPQDAPAEPAGTDRMEPETDGETPEGEQPTDRAAHDASAKMEEEEEEEEEEEEESLPGCTLFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPALTSARKKQAPRKQTTSKILVRNIPFQADSREIRELFSTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKYFSDAAVYQIPTLCQPRGSYCRAFNALCHSTHLYGRRLVLEWADSEVSLPALRRKTAEHFHEPPKKKRSVVLDEILEQLEDSEDDGEAQTLQL", "length": 968 }, "evidence": [ { "id": "F4JT92", "url": "https://omabrowser.org/oma/group/F4JT92/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0LLW4-1", "protein_name": "Probable RNA-binding protein 19", "gene_name": "Rbm19", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRLIVKNLPNGMKEDRFRQLFAAFGTLTDCSLKFTKEGKFRKFGFIGFKSEEEAQAALNHFHRSFIDTSRITVEFCKSFGDPSKPRAWSKHAQKPSQPKQPSQDSIPSDTKKDKKKKKVPSDLEKLKEDAEFQEFLSIHQKRTQVATWANDALEAELPKAKAKPSSDYLNFDSDSNSDSGQESEEEPAGEDGEEEQGLQPKAAVQKELSDMDYLKSKMVRAEVSSEDEDKEDSEDEAVNCEEGSEAEEEEGSPTCPAQQAGVNRGAVLGSLRPQEAAGKALRTAASYSSLRAQLNSQQGFSWISPAPLPAPGVPATTCHTSKRQAFTIFVISQVEKPASQKEPTTPYTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREKQASAARGAPKSSSAPWQGRTLGEHEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEANQEANAPGSSYKKKKEAMDKANSSSSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRMALGETQLVQEVRSFLIDNGVCLDSFSQAAAERSKTVILAKNLPAGTLAAELQEIFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQPEQPAQKAEAEQETVLNPEGEKALVEGAEASMGKMEEEEEEEEEEEEEESIPGCTLFIKNLNFNTTEETLKEVFSRVGAVKSCTISKKKSKAGVLLSMGFGFVEYKKPEQAQKALKRLQGHIVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQALRRKTAKHFQEPPKKKRSAVLDGILEQLEDGDDSDSEETLQL", "length": 1009 }, "evidence": [ { "id": "F4JT92", "url": "https://omabrowser.org/oma/group/F4JT92/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QF98-1", "protein_name": "Probable RNA-binding protein 19", "gene_name": "rbm19", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSRLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKHFNKSFVDTSRVTVELCTDFGDPNKARPWSKHTRQPSSKKDTEEKKTHEQGEKEKKKPKKILNVLGDLEKDESFQEFLAVHQKRGQVPTWANDTVEATAVRPEMEKKKEKKQKAAVEDDYLNFDSDESEESSDDGEDAADEEDKQDNEKEALKTGLSDMDYLRSKMVEKSDMLDEKDDDSSASAADENEEDEGKEEEESIVQHADSAYESGEKTSSQKSTRPAIEPTTEFTVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDKDYMGGRYIEVFRANNFKNDRRSAKRSEMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKEVFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHVMASRLKKEKADQGPDAPGSSSYKRKKDAKDKAASGSSHNWNTLFLGTSAVADAIAEKYNTTKSQVLDHESDGSLAVRMALGETQIVQETRQFLLDNGVSLDSFSQASGERSKCVILVKNLPSGVQVADLEALFSPHGSLGRVLLPPSGLTAIVEFLEPTEAKRAFMKLAYTKFQHVPLYLEWAPVAVFTTPSAPRPEPQTKEKSAVKNDSVQNEEEEEEEEEDDQILPGSTLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQKAMRQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSALCHSTHLYGRRLVLEWADAEETVDDLRRKTAQHFHDAPKKKRKAEVLEGILEQMEVGDGDGE", "length": 927 }, "evidence": [ { "id": "F4JT92", "url": "https://omabrowser.org/oma/group/F4JT92/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3GU41-1", "protein_name": "Probable RNA-binding protein 19", "gene_name": "Rbm19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALSHFNRSFIDTSRITVEFCKSFGDPTKPRAWSKHAQKPSKPKQPSQDSSPSDTKKDDKKKKVSSDLEKLKKDAEFQEFLSIHQKRTQVATWANDALDAELPRAKTKPSSDYLNFDSDSDSGQESEKELAGEEPEEEQGLQLKAATQKELSDMDYLKSKMVQRTEVSSEEEDQEDSEDEAVNCGEGSEDEEEEGSLASPAQQESVSQGAMPGSQRPQEATGKVEKPASKTEPTTPYTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREKAPSAHGPPKSSTTPWQGRTLGEHEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQDSDTSGSSYKKKKEAMDKANSSSSHNWNTLFMGPNAVADAIAQKYSATKSQVFDHETKGSVAVRVALGETQLVQEVRSFLIDNGVSLDSFSQAAAERSKTVILAKNLPAGTLAAELQEIFGRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGTVPQKKDSQPAQTAEKAKAEPEMVLDPEGEKTSGEGAEAPTGKVEEEEEEEEEDEEEESVPGCTLFIKNLNFSTTEETLKEVFSKVGAVKSCTVSKKKSKAGVLLSMGFGFVEYKKPEKAQKALKQLQGHVVDGHKLEVRISERATKPSLTPTRKKQVSKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFVTKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTLQALRRKTARHFQEPPKKKRSAVLDGILEQLEDGDDDDDIEQALQL", "length": 954 }, "evidence": [ { "id": "F4JT92", "url": "https://omabrowser.org/oma/group/F4JT92/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q06106-1", "protein_name": "Multiple RNA-binding domain-containing protein 1", "gene_name": "MRD1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQPMKEKRREALKRFREKEEKLLQEENRKKKKVDENKHSNIDDEIRKNKQLQEFMETMKPSSQVTSWEKVGIDKSIEDEKLKREEEDSSVQGNSLLAHALALKEENNKDEAPNLVIENESDDEYSALNRNRDEDQEDAGEEEKMISISNLKDTDIGLVNDDANSDEKENEKRRNLAQDEKVSDLDWFKQRRVRIKESEAETREKSSSYATEQNESLDTKKEEQPERAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGEEKKSHRLDEFDLKNMPLKKQKELKRKAAASRQTFSWNSLYMNQDAVLGSVAAKLGLEKSQLIDAENSSSAVKQALAEAHVIGDVRKYFESKGVDLTKFSQLKSTNQRDDKVILVKNFPFGTTREELGEMFLPYGKLERLLMPPAGTIAIVQFRDTTSARAAFTKLSYKRFKDGIIYLERGPKDCFTKPAEADDLINNTSAKEEENPVEVKPSSNDLMEANKDVTEGSSNAHDEDVIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYAEEDAVDAEEEIARMTKKVRKQVATNEMAALRNGGGRKKLDVDDEENEGF", "length": 887 }, "evidence": [ { "id": "F4JT92", "url": "https://omabrowser.org/oma/group/F4JT92/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54PB2-1", "protein_name": "Multiple RNA-binding domain-containing protein 1", "gene_name": "mrd1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNTRICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKKDGKSRLFGFIGFSTEQSAKNALSLNGTFIDTSKIVVETATVASETTENRPWSKYSIGSSSNKRLTEMEKEKEKKELKRKQDKLEQQSNKKQKKSHTNSLLDAELENDPEYQEFLNLVAPQANRKVWENDDKEIGKINRGEEEGEEGEENDNQVEDGKLPFSGKKKIELDHGKNKDLLVFEDADASDEEDLYEDMPTAPKKQNKKDDVDSIINEKKKKHDSSVSDLDWLSKFRSNNDEIIEKNQSIVYRDEEESEEEDVNNKENKKDKMKIDDNKENKKEKKKDKKKNKKDNDNDGDDDESKIKPIKYFEHDYTKEDEDVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDMDGKVFQGRLIHVLPGKAAPAKQFSENKDNNNNGAEGGSSSFKAEKEQKQKTTSGSTHNWNALFMRSDAIVSSLAERYKMTQGQLLDPNQMDLAVRMTLMETHVINETKKFLEDQGVIIQDIGNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSPARTIALIEYIHPNEAKVGFKNLAYSKFHHVPLYLEWAPEGVFKLPAPPKEIKKSEKSEKSSDSSNDKKEVESTTKTAATTTTTKKGTDNNTQFVYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEALGNSHFYGRHLVLQYAEQDKNIDELREKANLDYEKIKNSTF", "length": 895 }, "evidence": [ { "id": "F4JT92", "url": "https://omabrowser.org/oma/group/F4JT92/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8R3C6-1", "protein_name": "Probable RNA-binding protein 19", "gene_name": "Rbm19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHFHRSFIDTTRITVEFCKSFGDPSKPRAWSKHAQKSSQPKQPSQDSVPSDTKKDKKKKGPSDLEKLKEDAKFQEFLSIHQKRTQVATWANDALEAKLPKAKTKASSDYLNFDSDSNSDSGQESEEEPAREDPEEEQGLQPKAAVQKELSDMDYLKSKMVRAEVSSEDEDEEDSEDEAVNCEEGSEEEEEEGSPASPAKQGGVSRGAVPGVLRPQEAAGKVEKPVSQKEPTTPYTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPGSSYKKKKEAMDKANSSSSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETRGSVAVRVALGETQLVQEVRSFLIDNGVCLDSFSQAAAERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAEVEQETVLDPEGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQTLRRKTARHFQEPPKKKRSAVLDGILEQLEDEDNSDGEQALQL", "length": 952 }, "evidence": [ { "id": "F4JT92", "url": "https://omabrowser.org/oma/group/F4JT92/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VT19-1", "protein_name": "RRM domain-containing protein", "gene_name": "Dmel\\CG3335", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSRIIVKQLPKHITEDKLRQIFGAQGTITDLQLKYTPDGKFRQFCFVGYSTEEEAQSAIRHFDNTCIQTSRVRVESCAALGSEDKPQSWSKYAKDSKKNLDKLKEKEREAAAKAKESEKKKKKDKVDKVDQILSRHKDDPEFQEFLEAHDKSRTLWGNDLGINKNRENEEEDDEEQEESRAARDDSGVDADAGDEDGSGDEADEEEDTDKLAEKPISDLEYMKSLMATTSGEATAKKPKAKADKSNLELFTIKIHNVPYNTKRQEVLKFFKPLKPYSVRLPSKVHGFCYVGFKTEKDMAKGMLKNKSFIKGKQVFFSDFTEKNKVTKASKSGQPLAPAAVDAGNAKWKHQQDSLSKEDDISESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLLHLLPSKDIEKNPKEDLDENDASLSFKEKKALKLKKNAQKPIGWNTLFLGANAVAEILAKQFKTSKERILDTSDGGSSAAVRLALGETQVVIEMKRFLEEEGVRLDAFDEPAKKRSNTVILAKNLPAATEISEITPIFSRFGPIGRIVLPPSGVTALIEYCDPLEARQAFKKLAYSKFKNAPLYLEWAPEQVFTKTLSGEPVIPKSEPKPKEEVKPEEKPIVNDAKPDEEDSRAEDADDEPEPNTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPENPREFKSLGYGFIQFKKSSVAEHALKNLQLTHIDGNPVELKRSDRVLKTQDNDGAQRRLASQKKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDYMSKAEAKRAFDALSASTHLYGRRLVLEWSANDDNQDVEELRKRTAAKFDGSQAATAAKRSRKSFFDVEGSVQPNQDDDEEEEQ", "length": 918 }, "evidence": [ { "id": "F4JT92", "url": "https://omabrowser.org/oma/group/F4JT92/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y4C8-1", "protein_name": "Probable RNA-binding protein 19", "gene_name": "RBM19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPEIKKDEKKKKVAGQLEKLKEDTEFQEFLSVHQRRAQAATWANDGLDAEPSKGKSKPASDYLNFDSDSGQESEEEGAGEDLEEEASLEPKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCDEGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEKDPAEPETVPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEVTLQALRRKTAAHFHEPPKKKRSVVLDEILEQLEGSDSDSEEQTLQL", "length": 960 }, "evidence": [ { "id": "F4JT92", "url": "https://omabrowser.org/oma/group/F4JT92/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F4JT92", "url": "https://www.uniprot.org/uniprotkb/F4JT92" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JT92", "url": "https://www.uniprot.org/uniprotkb/F4JT92" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F4JT92", "url": "https://www.uniprot.org/uniprotkb/F4JT92" } ], "pmid": "" }, { "name": "nuclear speck", 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"end_pos": 486, "annotation": "n_glycosylation_sequon" }, { "start_pos": 608, "end_pos": 610, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JT92-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 816, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JT92-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JT92" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JT92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JT92" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33184:SF72", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33184:SF72", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24068", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24068", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_194938", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194938", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G32100", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G32100", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JTI5", "url": "https://www.uniprot.org/uniprotkb/F4JTI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JTI5-1", "url": "https://www.uniprot.org/uniprotkb/F4JTI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATNACKFLCLVLLFAFVTQGYGDDSYSLESLSVIQSKTGNMVENKPEWEVKVLNSSPCYFTHTTLSCVRFKSVTPIDSKVLSKSGDTCLLGNGDSIHDISFKYVWDTSFDLKVVDGYIACS", "length": 122, "header": "tr|F4JTI5-1|F4JTI5_ARATH Isoform 1 of Beta-1,3-N-Acetylglucosaminyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JTI5-1" }, "isoforms": [ { "isoform_ac": "F4JTI5-1", "url": "https://www.uniprot.org/uniprotkb/F4JTI5/entry", "sequence": { "sequence": "MATNACKFLCLVLLFAFVTQGYGDDSYSLESLSVIQSKTGNMVENKPEWEVKVLNSSPCYFTHTTLSCVRFKSVTPIDSKVLSKSGDTCLLGNGDSIHDISFKYVWDTSFDLKVVDGYIACS", "length": 122, "header": "tr|F4JTI5-1|F4JTI5_ARATH Isoform 1 of Beta-1,3-N-Acetylglucosaminyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JTI5-1" }, "locus": { "chromosome": "4", "start_pos": 15511757, "end_pos": 15512218, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G32100.1", "url": "https://www.ensemblgenomes.org/id/AT4G32100.1" }, { "database": "Ensembl Peptide", "id": "AT4G32100.1", "url": "https://www.ensemblgenomes.org/id/AT4G32100.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt 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"https://www.uniprot.org/uniprotkb/F4JTI5" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JTI5", "url": "https://www.uniprot.org/uniprotkb/F4JTI5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G32100", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G32100", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4JTI5", "url": "https://www.uniprot.org/uniprotkb/F4JTI5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell fate determination", "id": "GO:0001709", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001709", "evidence": [ { "database": "UniProtKB", "id": "F4JTI5", "url": "https://www.uniprot.org/uniprotkb/F4JTI5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JTI5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 122, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JTI5-F1.pdb", 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"MLSSSGSSLLWRSRTHVPAPPPRSSPPLKALSFPFSSSLWFIHRTTISPLSCSAESSSEIALAQSQPAPDFNPWSEFAQNVSGEWDGFGADFTCEGQPLELPESVVPEAFREWEVKVFDWQTQCPTLAQPNSLSFLYKSIKLLPTVGCEADAATRYSIDQRIIGGGKSSALAFSYSVTGSYVAVWPLRNNQLEVEHCLINPKDKESRVRIFQVVSLAETTNMSLQSVKVFCEQWYGPFRDGDQLGGCAIRSSGFAATPTTAASVVTGSWRVLLATTSFHASDFVSWRPYTVYSSVYFHSMIAVSLFIL", "length": 308, "header": "tr|F4JTL2-1|F4JTL2_ARATH Computationally mapped isoform of Glycerol kinase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JTL0-1" }, "locus": { "chromosome": "4", "start_pos": 17927222, "end_pos": 17928762, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G38225.2", "url": "https://www.ensemblgenomes.org/id/AT4G38225.2" }, { "database": "Ensembl Peptide", "id": "AT4G38225.2", "url": "https://www.ensemblgenomes.org/id/AT4G38225.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JTL0", "url": "https://www.uniprot.org/uniprotkb/F4JTL0" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JTL0", "url": "https://www.uniprot.org/uniprotkb/F4JTL0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "F4JTL0", "url": "https://www.uniprot.org/uniprotkb/F4JTL0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JTL0", "url": "https://www.uniprot.org/uniprotkb/F4JTL0" } ], "pmid": "" } ] } ] }, 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0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JTM0-1", "uniprot_ac": "F4JTM0", "uniprot_id": "F4JTM0_ARATH", "mass": { "chemical_mass": 31095.0, "monoisotopic_mass": 31095.0 }, "refseq": {}, "gene_names": [ { "name": "F22I13.30", "type": "synonym", "evidence": [ { "id": "F4JTM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTM0" } ] }, { "name": "F22I13_30", "type": "synonym", "evidence": [ { "id": "F4JTM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTM0" } ] } ], "protein_names": [ { "name": "Transport/golgi organization-like protein (DUF833)", "type": "synonym", "evidence": [ { "id": "F4JTM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTM0/entry#names_and_taxonomy" } ] } ], 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"database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FAWRPGH", "url": "https://omabrowser.org/oma/group/FAWRPGH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR17985", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17985", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17985:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17985:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05742", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05742", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G38260", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G38260", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JTM0", "url": "https://www.uniprot.org/uniprotkb/F4JTM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JTM0-1", "url": "https://www.uniprot.org/uniprotkb/F4JTM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCIAVFLWQSHPLYPFLLFLNRDEDHNRATEALRWWEDGETVGGRDLVGGGTWLGCTRHGRLAFLTNFKEASSFPAAKSRGDLPLRYLQSEKSPAEFAEEIQDEISLYNGFNLVVAHVLSKSMIYITNRPPHGDKLVTQVSPGIHVLSNANLDSPWPKCLRLREGFQQLLAENGSGEFPVKTMVEEVMTNTVKDEETELPHVFTPETEYHLSSIFVDMQRPTGRYGTRSISAIIVKSHGDGGGDGEICFYERHLEEGDSWKEHTQQFVIIQNQSI", "length": 275, "header": "tr|F4JTM0-1|F4JTM0_ARATH Isoform 1 of Transport/golgi organization-like protein (DUF833) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JTM0-1" }, "isoforms": [ { "isoform_ac": "F4JTM0-1", "url": "https://www.uniprot.org/uniprotkb/F4JTM0/entry", "sequence": { "sequence": "MCIAVFLWQSHPLYPFLLFLNRDEDHNRATEALRWWEDGETVGGRDLVGGGTWLGCTRHGRLAFLTNFKEASSFPAAKSRGDLPLRYLQSEKSPAEFAEEIQDEISLYNGFNLVVAHVLSKSMIYITNRPPHGDKLVTQVSPGIHVLSNANLDSPWPKCLRLREGFQQLLAENGSGEFPVKTMVEEVMTNTVKDEETELPHVFTPETEYHLSSIFVDMQRPTGRYGTRSISAIIVKSHGDGGGDGEICFYERHLEEGDSWKEHTQQFVIIQNQSI", "length": 275, "header": "tr|F4JTM0-1|F4JTM0_ARATH Isoform 1 of Transport/golgi organization-like protein (DUF833) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JTM0-1" }, "locus": { "chromosome": "4", "start_pos": 17936921, "end_pos": 17938270, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G38260.1", "url": "https://www.ensemblgenomes.org/id/AT4G38260.1" }, { "database": "Ensembl Peptide", "id": "AT4G38260.1", "url": "https://www.ensemblgenomes.org/id/AT4G38260.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, 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"https://www.ebi.ac.uk/interpro/entry/IPR029070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G19720", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G19720", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PADLCSH", "url": "https://omabrowser.org/oma/group/PADLCSH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4JTY4", "url": "https://www.orthodb.org/?gene=F4JTY4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11177", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11177", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11177:SF393", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11177:SF393", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00704", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00704", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G19720", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G19720", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JTY4", "url": "https://www.uniprot.org/uniprotkb/F4JTY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JTY4-1", "url": "https://www.uniprot.org/uniprotkb/F4JTY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYTEVVKASYWFPDGASSPTTGSVVPQSSAVLIDSTLFTHLFCAFADLDPQTNSVVVSGAHEQEFSNFTKIVKKKNPHVQTLLSIGGRNADKSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWKYPKDDVEMRNFGQLLEQWREAIEDDAERTERMPLLLTAAVYYSPVYDSVSYPIREIKKKLDWVNLIAYDFYSSSTTIGPPAALFDPSNPKGPCGDYGLKEWIKAGLPAKKAVLGFPYVGWTWSLGSGNDAATSRVATSAEGSINYDQIKRLIVDHKARPVFDSTVVGDYCFAGTSLIGYDDHQSVVAKVKYAKQKGLLGYFSWHVGADDNFGLSRAASQAWDAKETKTTSGDNH", "length": 363, "header": "tr|F4JTY4-1|F4JTY4_ARATH Isoform 1 of Glycosyl hydrolase family protein with chitinase insertion domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4JTY4-1" }, "isoforms": [ { "isoform_ac": "F4JTY4-1", "url": "https://www.uniprot.org/uniprotkb/F4JTY4/entry", "sequence": { "sequence": "MYTEVVKASYWFPDGASSPTTGSVVPQSSAVLIDSTLFTHLFCAFADLDPQTNSVVVSGAHEQEFSNFTKIVKKKNPHVQTLLSIGGRNADKSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWKYPKDDVEMRNFGQLLEQWREAIEDDAERTERMPLLLTAAVYYSPVYDSVSYPIREIKKKLDWVNLIAYDFYSSSTTIGPPAALFDPSNPKGPCGDYGLKEWIKAGLPAKKAVLGFPYVGWTWSLGSGNDAATSRVATSAEGSINYDQIKRLIVDHKARPVFDSTVVGDYCFAGTSLIGYDDHQSVVAKVKYAKQKGLLGYFSWHVGADDNFGLSRAASQAWDAKETKTTSGDNH", "length": 363, "header": "tr|F4JTY4-1|F4JTY4_ARATH Isoform 1 of Glycosyl hydrolase family protein with chitinase insertion domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4JTY4-1" }, "locus": { "chromosome": "4", "start_pos": 10729966, "end_pos": 10731808, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G19720.1", "url": "https://www.ensemblgenomes.org/id/AT4G19720.1" }, { "database": "Ensembl Peptide", "id": "AT4G19720.1", "url": "https://www.ensemblgenomes.org/id/AT4G19720.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JTY4", "url": "https://www.uniprot.org/uniprotkb/F4JTY4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JTY4", "url": "https://www.uniprot.org/uniprotkb/F4JTY4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G19720", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G19720", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4JTY4", "url": "https://www.uniprot.org/uniprotkb/F4JTY4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "F4JTY4", "url": "https://www.uniprot.org/uniprotkb/F4JTY4" } ], "pmid": "" }, { "name": "chitin catabolic process", "id": "GO:0006032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006032", "evidence": [ { "database": "UniProtKB", "id": "F4JTY4", "url": "https://www.uniprot.org/uniprotkb/F4JTY4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "chitinase activity", "id": "GO:0004568", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004568", "evidence": [ { "database": "UniProtKB", "id": "F4JTY4", "url": "https://www.uniprot.org/uniprotkb/F4JTY4" } ], "pmid": "" }, { "name": "chitin binding", "id": "GO:0008061", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008061", "evidence": [ { "database": "UniProtKB", "id": "F4JTY4", "url": "https://www.uniprot.org/uniprotkb/F4JTY4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JTY4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 363, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JTY4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JTY4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JTY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTY4" }, { "id": "PS51910", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51910" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GH18", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 353, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JTY7-1", "uniprot_ac": "F4JTY7", "uniprot_id": "F4JTY7_ARATH", "mass": { "chemical_mass": 39731.0, "monoisotopic_mass": 39731.0 }, "refseq": { "ac": "NP_193710", "name": "Glycosyl hydrolase family protein with chitinase insertion domain-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193710" }, "gene_names": [ { "name": "T16H5.110", "type": "synonym", "evidence": [ { "id": "NP_193710", "database": 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"database": "UniProtKB", "id": "F4JTY7", "url": "https://www.uniprot.org/uniprotkb/F4JTY7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JTY7", "locus": {} } ], "crossref": [ { "id": "F4JTY7", "url": "https://alphafold.ebi.ac.uk/entry/F4JTY7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G19750", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G19750", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd02879", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02879", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "827719", "url": "https://www.ncbi.nlm.nih.gov/gene/827719", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001223", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001223", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011583", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011583", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G19750", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G19750", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MVWTLGM", "url": "https://omabrowser.org/oma/group/MVWTLGM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11177", "url": 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"categories": [ "Protein" ] } ], "sequence": { "sequence": "MADQTQFLRTNSIVKASYWVVKPENDFPAGNIDSTRFTHLFCAFADVDSSTHEVTISAANSCQVSSFTHTVKDKNTDVQTLLSIGGKDADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDLAWEYPSNDVEMANFGKLVKEWRAAVVEESDRTNQLPLLLTAAVYYSPDYYGEEYPVQAIADNLDFVNIMAYDFYGPGWSPVTGPPAALFDPSNPAGRSGDSGLSKWLEAKLPAKKAVLGFSYCGWAWTLEDAENNGYDAATDGAAISSDGSITYAKIRNYIIDNGAATFHDPAVIGFYCYVGTTWIGYDDNQSIVSKVRYAKLKGLLGYFSWHVGADYNCGLSRAGSFSLTFFLLYP", "length": 362, "header": "tr|F4JTY7-1|F4JTY7_ARATH Isoform 1 of Glycosyl hydrolase family protein with chitinase insertion domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JTY7-1" }, "isoforms": [ { "isoform_ac": "F4JTY7-1", "url": "https://www.uniprot.org/uniprotkb/F4JTY7/entry", "sequence": { "sequence": "MADQTQFLRTNSIVKASYWVVKPENDFPAGNIDSTRFTHLFCAFADVDSSTHEVTISAANSCQVSSFTHTVKDKNTDVQTLLSIGGKDADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDLAWEYPSNDVEMANFGKLVKEWRAAVVEESDRTNQLPLLLTAAVYYSPDYYGEEYPVQAIADNLDFVNIMAYDFYGPGWSPVTGPPAALFDPSNPAGRSGDSGLSKWLEAKLPAKKAVLGFSYCGWAWTLEDAENNGYDAATDGAAISSDGSITYAKIRNYIIDNGAATFHDPAVIGFYCYVGTTWIGYDDNQSIVSKVRYAKLKGLLGYFSWHVGADYNCGLSRAGSFSLTFFLLYP", "length": 362, "header": "tr|F4JTY7-1|F4JTY7_ARATH Isoform 1 of Glycosyl hydrolase family protein with chitinase insertion domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JTY7-1" }, "locus": { "chromosome": "4", "start_pos": 10745682, "end_pos": 10747127, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G19750.1", "url": "https://www.ensemblgenomes.org/id/AT4G19750.1" }, { "database": "Ensembl Peptide", "id": "AT4G19750.1", "url": "https://www.ensemblgenomes.org/id/AT4G19750.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De 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Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JTY7", "url": "https://www.uniprot.org/uniprotkb/F4JTY7" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete 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"categories": [ "Protein Classification" ] }, { "id": "IPR011583", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011583", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G19770", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G19770", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AGPANYH", "url": "https://omabrowser.org/oma/group/AGPANYH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11177", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11177", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11177:SF393", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11177:SF393", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00704", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00704", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_193712", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193712", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G19770", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G19770", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JTY9", "url": "https://www.uniprot.org/uniprotkb/F4JTY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JTY9-1", "url": "https://www.uniprot.org/uniprotkb/F4JTY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSSYGRKSFILSTISIARSYGFDGLDLDWEYPRNAAEMSDFAELLKEWRYAVQGEAYSSELPVLILTATVYYSSNYNGVVYPVKFISELLDWVNIKAYDFYGPGCTEVTGPPAALYLQSDGPSGDSGVKDWIDAGLPAEKAVLGFPYYGWAWTLADPKNHGYYVDTTGPAISDDGEISYSQLKTWIVDNKATTVHDNIVIGDYCYAGTTWIGYDSEESIVTKVIYAKQKGLLGYFSWQVGGDDKSELSSAGSSPYHILI", "length": 261, "header": "tr|F4JTY9-1|F4JTY9_ARATH Isoform 1 of Glycosyl hydrolase family protein with chitinase insertion domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JTY9-1" }, "isoforms": [ { "isoform_ac": "F4JTY9-1", "url": "https://www.uniprot.org/uniprotkb/F4JTY9/entry", "sequence": { "sequence": "MASSSYGRKSFILSTISIARSYGFDGLDLDWEYPRNAAEMSDFAELLKEWRYAVQGEAYSSELPVLILTATVYYSSNYNGVVYPVKFISELLDWVNIKAYDFYGPGCTEVTGPPAALYLQSDGPSGDSGVKDWIDAGLPAEKAVLGFPYYGWAWTLADPKNHGYYVDTTGPAISDDGEISYSQLKTWIVDNKATTVHDNIVIGDYCYAGTTWIGYDSEESIVTKVIYAKQKGLLGYFSWQVGGDDKSELSSAGSSPYHILI", "length": 261, "header": "tr|F4JTY9-1|F4JTY9_ARATH Isoform 1 of Glycosyl hydrolase family protein with chitinase insertion domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JTY9-1" }, "locus": { "chromosome": "4", "start_pos": 10753310, "end_pos": 10754202, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G19770.1", "url": "https://www.ensemblgenomes.org/id/AT4G19770.1" }, { "database": "Ensembl Peptide", "id": "AT4G19770.1", "url": "https://www.ensemblgenomes.org/id/AT4G19770.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, 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"https://www.uniprot.org/uniprotkb/F4JU10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTMPAFRRRPRPQIYISFQGNDLRKGFVSHVVKALKDARVNVFVDNDHDQWERRGPHHHDDHLFVRRIHNSKLALVIFSDQYAESQQCLNELTTIHERVAEGKLMVIPIFYKVNIEEVNNLEGRFGKCFDEMVRTQGRQNHQLTHHIVGCLRSIARKPSFTSGYYSNDSDLVEAIIQGIKKKIPYISAKQTIGEEVSAELLSASVVAALCFYFIPISVFPDLGFFISPRWYLAVMLLFVVRHSLRSIQR", "length": 249, "header": "tr|F4JU10-1|F4JU10_ARATH Isoform 1 of Toll-Interleukin-Resistance (TIR) domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JU10-1" }, "isoforms": [ { "isoform_ac": "F4JU10-1", "url": "https://www.uniprot.org/uniprotkb/F4JU10/entry", "sequence": { "sequence": "MTMPAFRRRPRPQIYISFQGNDLRKGFVSHVVKALKDARVNVFVDNDHDQWERRGPHHHDDHLFVRRIHNSKLALVIFSDQYAESQQCLNELTTIHERVAEGKLMVIPIFYKVNIEEVNNLEGRFGKCFDEMVRTQGRQNHQLTHHIVGCLRSIARKPSFTSGYYSNDSDLVEAIIQGIKKKIPYISAKQTIGEEVSAELLSASVVAALCFYFIPISVFPDLGFFISPRWYLAVMLLFVVRHSLRSIQR", "length": 249, "header": "tr|F4JU10-1|F4JU10_ARATH Isoform 1 of Toll-Interleukin-Resistance (TIR) domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JU10-1" }, "locus": { "chromosome": "4", "start_pos": 10799732, "end_pos": 10800792, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G19925.1", "url": "https://www.ensemblgenomes.org/id/AT4G19925.1" }, { "database": "Ensembl Peptide", "id": "AT4G19925.1", "url": "https://www.ensemblgenomes.org/id/AT4G19925.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JU10", "url": "https://www.uniprot.org/uniprotkb/F4JU10" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JU10", "url": "https://www.uniprot.org/uniprotkb/F4JU10" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G19925", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G19925", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JU10", "url": "https://www.uniprot.org/uniprotkb/F4JU10" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JU10", "url": "https://www.uniprot.org/uniprotkb/F4JU10" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "F4JU10", "url": "https://www.uniprot.org/uniprotkb/F4JU10" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F4JU10", "url": "https://www.uniprot.org/uniprotkb/F4JU10" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JU10-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 249, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JU10-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JU10" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JU10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JU10" }, { "id": "PS50104", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50104" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TIR", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 183, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 167, "end_pos": 169 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JU71-1", "uniprot_ac": "F4JU71", "uniprot_id": "F4JU71_ARATH", "mass": { "chemical_mass": 117633.0, "monoisotopic_mass": 117633.0 }, "refseq": {}, "gene_names": [ { "name": "T25K17.7", "type": "synonym", "evidence": [ { "id": "F4JU71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JU71" } ] } ], "protein_names": [ { "name": "Haloacid dehalogenase-like hydrolase (HAD) superfamily protein", "type": "synonym", "evidence": [ { "id": "F4JU71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JU71/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JU71", "url": "https://www.uniprot.org/uniprotkb/F4JU71" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JU71", "locus": {} } ], "crossref": [ { "id": "AT4G26190", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G26190", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828725", "url": "https://www.ncbi.nlm.nih.gov/gene/828725", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004274", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004274", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G26190", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G26190", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HKTDDME", "url": "https://omabrowser.org/oma/group/HKTDDME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12210", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12210", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03031", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03031", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G26190", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G26190", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JU71", "url": "https://www.uniprot.org/uniprotkb/F4JU71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JU71-1", "url": "https://www.uniprot.org/uniprotkb/F4JU71-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESVSVETLSETGNSNDGQTNPELIDKHKKRSGKKKRKSRKLDNEVKDNDSHISSQIGNADEAFSSQEKKEGENEKSTSESQVRLSENLLSSLPAESCQRDSVSCEEPRATLHHTDPISCEDSLPDDNRKGSSTKKSKRREKKKKKEDLSCEEKLLDEVEKITSEDQVHPPNNPLSNGMVQERSGELTQDSCEKPGAAQICTDPNLSTCKDSLPDATNMTSSSKRKRNKRRDRNVLKESGVDIGSTNAEVAVTDNTTTEAEGSRSMSIEENSVASVLINGCLKSKVDTVEQLDGTDVQINETVFQTQSTKAKKRKKKKTKTMEACDPLGNTLPTSTESGPVECVENNDGNKEKDGNTEVKEDVREVKYDTISEAEGSKSTTKEEKSVASVVISSCLKSKDDTVEQKECTDVNISETVAQTQDPKAKRRKKRKTETIEVCDPLGNTLSTSMKSGPVERVENNDGNGGRELISYSASQTENYVNGEENGIQNLGKTKEKETDENTEVKEDVLGAGVCDVRSKKRKGKKKKTSSADMEVFEPSGSVECLLNQSNEKDMQNFDGNAGQEFGGEDMTIKIEKSATREKSGVQKSGKRKEMTKDKNIESNQDALDAEGVSDDGHKREKRKIKNKTNCESVATMDSESVQSLLYQSNGEGVKNYEGNADGEIASKDLASNIEDSATKGESVQDDKNTKKRKKDRKGEVDQDAKGAEGVSTVEVTTKKSKKKKNLLDHKTDNMEEDSIKKNEKKEEVDQNDLGAEGVSKVEVKTKKSKRKKNSLDHKTDDMEGKDDVSLPRKDEEPEFDREKLETSLSSSVLIQNDNVAQGVISSETGDVPRCTCKAQRTRKLVIFDLNGILADIVQGFTGTFLPDGKVSYRSVFRRPFLPSFLDFCFERFDVAIWSSRRVGLDYMINIVMKNHARNLLFCFDQNICTTTKFKTQEKKDKPLFLKDLRRVWDHIGTCISCGKRKYDETNTLLVDDSPDKALCNPPHTGIFPSPYQYTNRQDSALGPEGELRKYLERLADAENVQKFVAENPFGQTAITETHESWEFYSKAVEAHK", "length": 1057, "header": "tr|F4JU71-1|F4JU71_ARATH Isoform 1 of Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JU71-1" }, "isoforms": [ { "isoform_ac": "F4JU71-1", "url": "https://www.uniprot.org/uniprotkb/F4JU71/entry", "sequence": { "sequence": 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Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JUA4", "url": "https://www.uniprot.org/uniprotkb/F4JUA4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JUA4", "url": "https://www.uniprot.org/uniprotkb/F4JUA4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G32375", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G32375", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JUA4", "url": "https://www.uniprot.org/uniprotkb/F4JUA4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "polygalacturonase activity", "id": "GO:0004650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004650", "evidence": [ { "database": "UniProtKB", "id": "F4JUA4", "url": 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"length": 1965, "header": "tr|F4JUG3-1|F4JUG3_ARATH Isoform 1 of Nucleoporin (DUF3414) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JUG3-1" }, "locus": { "chromosome": "4", "start_pos": 18084652, "end_pos": 18096218, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G38760.1", "url": "https://www.ensemblgenomes.org/id/AT4G38760.1" }, { "database": "Ensembl Peptide", "id": "AT4G38760.1", "url": "https://www.ensemblgenomes.org/id/AT4G38760.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, 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Peptide", "id": "AT4G14120.1", "url": "https://www.ensemblgenomes.org/id/AT4G14120.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 222, "end_pos": 222, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JUL3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JUL3" } ], "site_lbl": "Thr222" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, 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V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JUP0", "url": "https://www.uniprot.org/uniprotkb/F4JUP0" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", 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OX=3702 GN= PE=1 SV=1 CANONICAL=F4JV39-1" }, "locus": { "chromosome": "4", "start_pos": 15759243, "end_pos": 15763113, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G32670.1", "url": "https://www.ensemblgenomes.org/id/AT4G32670.1" }, { "database": "Ensembl Peptide", "id": "AT4G32670.1", "url": "https://www.ensemblgenomes.org/id/AT4G32670.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 767, "end_pos": 767, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JV39", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JV39" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr767" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": 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Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, 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Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "F4JV39", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JV39" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JV39", "url": "https://www.uniprot.org/uniprotkb/F4JV39" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G32670", "name": "", 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G32920", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G32920", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JV81", "url": "https://www.uniprot.org/uniprotkb/F4JV81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JV81-1", "url": "https://www.uniprot.org/uniprotkb/F4JV81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1432, "header": "tr|F4JV81-1|F4JV81_ARATH Isoform 1 of Glycine-rich protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JV81-1" }, "isoforms": [ { "isoform_ac": "F4JV81-1", "url": "https://www.uniprot.org/uniprotkb/F4JV81/entry", "sequence": { "sequence": 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"length": 1432, "header": "tr|F4JV81-1|F4JV81_ARATH Isoform 1 of Glycine-rich protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JV81-1" }, "locus": { "chromosome": "4", "start_pos": 15887570, "end_pos": 15896345, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G32920.1", "url": "https://www.ensemblgenomes.org/id/AT4G32920.1" }, { "database": "Ensembl Peptide", "id": "AT4G32920.1", "url": "https://www.ensemblgenomes.org/id/AT4G32920.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 838, "start_aa": "Thr", "end_pos": 838, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr838", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JV81", "url": "https://www.uniprot.org/uniprotkb/F4JV81" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JV81", "url": "https://www.uniprot.org/uniprotkb/F4JV81" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G32920", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G32920", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plant-type vacuole", "id": "GO:0000325", "url": 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"MLHVNRRYGVQYRNTGRDVKASSTASVFVFITTGGYCFEQLGSYRYRTTQSSLLSPRASARWSSQTYSMRYEANFKLKKNVFISAYNRPTNVVPSVPSSYTPFPPNLICAEVGSEIYTVGSHIYHAMWVHNELTGNGRKAPSMMMNQRIGLRFSTQRLKLGNLYRTLAPEVRLSLNKKILPMDGNICVTIKKKNVESKKKKKNVESKNKKKDFVYLLKEKKWEVVKDHSSLVEKYCVIENVEYTYADKRCWWMETTSSEESSEEWRLVNGLTGLDAYVINDTEFCTYGGKLLLFWDSPALSPLDQTKKIWCAVILLDKSLNDEVSGQIEWADVVLTVPVSYTLWDCVKFSTYSTICFPVLFFNTQTHT", "length": 368, "header": "tr|F4JV88-1|F4JV88_ARATH Isoform 1 of LOW protein: coatomer subunit alpha-1-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JV88-1" }, "isoforms": [ { "isoform_ac": "F4JV88-1", "url": "https://www.uniprot.org/uniprotkb/F4JV88/entry", "sequence": { "sequence": "MLHVNRRYGVQYRNTGRDVKASSTASVFVFITTGGYCFEQLGSYRYRTTQSSLLSPRASARWSSQTYSMRYEANFKLKKNVFISAYNRPTNVVPSVPSSYTPFPPNLICAEVGSEIYTVGSHIYHAMWVHNELTGNGRKAPSMMMNQRIGLRFSTQRLKLGNLYRTLAPEVRLSLNKKILPMDGNICVTIKKKNVESKKKKKNVESKNKKKDFVYLLKEKKWEVVKDHSSLVEKYCVIENVEYTYADKRCWWMETTSSEESSEEWRLVNGLTGLDAYVINDTEFCTYGGKLLLFWDSPALSPLDQTKKIWCAVILLDKSLNDEVSGQIEWADVVLTVPVSYTLWDCVKFSTYSTICFPVLFFNTQTHT", "length": 368, "header": "tr|F4JV88-1|F4JV88_ARATH Isoform 1 of LOW protein: coatomer subunit alpha-1-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JV88-1" }, "locus": { "chromosome": "4", "start_pos": 18202607, "end_pos": 18204634, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G39060.1", "url": "https://www.ensemblgenomes.org/id/AT4G39060.1" }, { "database": "Ensembl Peptide", "id": "AT4G39060.1", "url": "https://www.ensemblgenomes.org/id/AT4G39060.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 51, "end_pos": 51, "kinase_uniprot_canonical_ac": 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"https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Tyr67" }, { "start_pos": 68, "end_pos": 68, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JV88", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JV88" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser68" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JV88", "url": "https://www.uniprot.org/uniprotkb/F4JV88" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "F4JV88", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JV88" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JV88", "url": "https://www.uniprot.org/uniprotkb/F4JV88" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G39060", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G39060", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JV88", "url": "https://www.uniprot.org/uniprotkb/F4JV88" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 280, "end_pos": 282, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JV88-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 368, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JV88-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JV88" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JV88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JV88" }, { "id": "PF25210", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25210" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FKB95-like N-terminal Kelch", "eco_id": "ECO_0000259", "start_pos": 188, "end_pos": 335, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 51, 52, 67, 68 ], "sequon_annotation_sites": [ { "start_pos": 280, "end_pos": 282 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"Organism-specific" ] }, { "id": "F4JVA4", "url": "https://www.uniprot.org/uniprotkb/F4JVA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JVA4-1", "url": "https://www.uniprot.org/uniprotkb/F4JVA4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLDFDDQPSDHAAPAVRAGARFKPKGRPQPKKKQVSLSTTQTTLSPDVAQEKLSTQSEDLVPLDGSSEIPSNALPSETNVPDSGSINKSTIGTLSEENEDAFPRGVHWSVKPSILRACNNVNLVGNRRDDGIEATTSFPDDPRTQDSAIFGDYVTPETGADEGRVDMETLDIVQEEGTTSSYVQHTGKLQPKPRLLETVVEEPEPHYSAGDTGYFPMGTNESEFMANVESRNGFSTYEDLQEEELNIPEAPRETVGEMEAQNASGGWEQEEQGVSPCINNTVTGEEENCMGNTVEEQSKRESKTGKSKRATSRKRKKTSEEPNKSSEKTEQKKFKHSSRRQKRTLEKELLETPDHEIRSLPLRDMLRLVEYKEWMQKKEAKGAGVQPSQESNNMNGSGSQYHSQGFDEEDEFGDFGIESSEYQENNVVKPDSPVNYQTYMNKTSRTRWSKEDTELFYEGIQEFGSNLSMIQQLFPERTREQMKLKFKLEERRNPLKLNDALSSRSKHFTHFKNVIKKLQQEAAAAKEGEEEEEAGAEAETTDVPENEEPEKSEETERASDGVAAGVKESDGGDVENGVRSDGGDECDDDEDFWNSYKSDIICKRHAKLAMNTFVIFTNSKTRP", "length": 624, "header": "tr|F4JVA4-1|F4JVA4_ARATH Isoform 1 of Homeodomain-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JVA4-1" }, "isoforms": [ { "isoform_ac": "F4JVA4-1", "url": "https://www.uniprot.org/uniprotkb/F4JVA4/entry", "sequence": { "sequence": "MDLDFDDQPSDHAAPAVRAGARFKPKGRPQPKKKQVSLSTTQTTLSPDVAQEKLSTQSEDLVPLDGSSEIPSNALPSETNVPDSGSINKSTIGTLSEENEDAFPRGVHWSVKPSILRACNNVNLVGNRRDDGIEATTSFPDDPRTQDSAIFGDYVTPETGADEGRVDMETLDIVQEEGTTSSYVQHTGKLQPKPRLLETVVEEPEPHYSAGDTGYFPMGTNESEFMANVESRNGFSTYEDLQEEELNIPEAPRETVGEMEAQNASGGWEQEEQGVSPCINNTVTGEEENCMGNTVEEQSKRESKTGKSKRATSRKRKKTSEEPNKSSEKTEQKKFKHSSRRQKRTLEKELLETPDHEIRSLPLRDMLRLVEYKEWMQKKEAKGAGVQPSQESNNMNGSGSQYHSQGFDEEDEFGDFGIESSEYQENNVVKPDSPVNYQTYMNKTSRTRWSKEDTELFYEGIQEFGSNLSMIQQLFPERTREQMKLKFKLEERRNPLKLNDALSSRSKHFTHFKNVIKKLQQEAAAAKEGEEEEEAGAEAETTDVPENEEPEKSEETERASDGVAAGVKESDGGDVENGVRSDGGDECDDDEDFWNSYKSDIICKRHAKLAMNTFVIFTNSKTRP", "length": 624, "header": "tr|F4JVA4-1|F4JVA4_ARATH Isoform 1 of Homeodomain-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JVA4-1" }, "locus": { "chromosome": "4", "start_pos": 18236355, "end_pos": 18240478, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G39160.2", "url": "https://www.ensemblgenomes.org/id/AT4G39160.2" }, { "database": "Ensembl Peptide", "id": "AT4G39160.2", "url": "https://www.ensemblgenomes.org/id/AT4G39160.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JVA4", "url": "https://www.uniprot.org/uniprotkb/F4JVA4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JVA4", "url": "https://www.uniprot.org/uniprotkb/F4JVA4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G39160", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G39160", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JVA4", "url": "https://www.uniprot.org/uniprotkb/F4JVA4" } ], "pmid": "" }, { "name": "transcription factor TFIIIB complex", "id": "GO:0000126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000126", "evidence": [ { "database": "UniProtKB", "id": "F4JVA4", "url": "https://www.uniprot.org/uniprotkb/F4JVA4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "TFIIIC-class transcription factor complex binding", "id": "GO:0001156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001156", "evidence": [ { "database": "UniProtKB", "id": "F4JVA4", "url": "https://www.uniprot.org/uniprotkb/F4JVA4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "RNA polymerase III preinitiation complex assembly", "id": "GO:0070898", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070898", "evidence": [ { "database": "UniProtKB", "id": "F4JVA4", "url": "https://www.uniprot.org/uniprotkb/F4JVA4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 263, "end_pos": 265, "annotation": "n_glycosylation_sequon" }, { "start_pos": 280, "end_pos": 282, "annotation": "n_glycosylation_sequon" }, { "start_pos": 324, "end_pos": 326, "annotation": "n_glycosylation_sequon" }, { "start_pos": 396, "end_pos": 398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } 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"database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARKKTETATESSKEIKAKGKFTRAKKSMKTTTKNIHQSGKHNSGKEEKYKCSAQPSSSQEQRLIHTEDQTQKVPVLDIHSSKDVPRSGKMKLQLFPLDAHTREGLEKDGFHPYLELTLSSRKKISSVLQRIHSKWGSSEIARGDPTLYPYDTSVLASGHKWVANSNITTGNVYEAIGAPFIFRLRYGWSSATENKTNEPPSPSTPGTGTQMLGSENPLTMLSSPNQVTDTPPLENLPHDGQVESTENKINDGSGPTLLFWDDGLTSLSIGGLLSEVSLKGNFGNHCKNSNAGNANATLWEDNLTNISIGGLFSEASLQDRWHMNNEREPAHNGQSIGSIGGLLSEASILGEGRISDCNKTWETRRAIKQPPLPLISDSLDAFLVNQTDNRRAPCHAPLPESSHSSILDAEDTCHAFSFRKRTTITPKVHDQKFRTCNSWLWDMKIWQVSGEVEKEKQIDESNPAKPLLGSSVFNQDSSLGLSGIKWAESRGPFDFGLSSSRKFANGDSVSFGAVVKDLQEMEPLEKKIKLQKH", "length": 534, "header": "tr|F4JVE0-1|F4JVE0_ARATH Isoform 1 of TSL-kinase interacting-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JVE0-1" }, "isoforms": [ { "isoform_ac": "F4JVE0-1", "url": "https://www.uniprot.org/uniprotkb/F4JVE0/entry", "sequence": { "sequence": 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"https://www.ensemblgenomes.org/id/AT4G39380.2" } ] } }, { "isoform_ac": "Q9SVB9-1", "url": "https://www.uniprot.org/uniprotkb/Q9SVB9/entry", "sequence": { "sequence": "MARKKTETATESSKEIKAKGKFTRAKKSMKTTTKNIHQSGKHNSGKEEKYKCSAQPSSSQEQRLIHTEDQTQKVPVLDIHSSKDVPRSGKMKLQLFPLDAHTREGLEKDGFHPYLELTLSSRKKISSVLQRIHSKWGSSEIARGDPTLYPYDTSVLASGHKWVANSNITTGNVYEAIGAPFIFRLRYGWSSATENKTNEPPSPSTPGTGTQMLGSENPLTMLSSPNQVTDTPPLENLPHDGQVESTENKINDGSGPTLLFWDDGLTSLSIGGLLSEVSLKGNFGNHCKNSNAGNANATLWEDNLTNISIGGLFSEASLQDRWHMNNEREPAHNGQSIGSIGGLLSEASILGEGRISDCNKTWETRRAIKQPPLPLISDSLDAFLVNQTDNRRAPCHAPLPESSHSSILDAEDTCHAFSFRKRTTITPKVHDQVSGEVEKEKQIDESNPAKPLLGSSVFNQDSSLGLSGIKWAESRGPFDFGLSSSRKFANGDSVSFGAVVKDLQEMEPLEKKIKLQKH", "length": 518, "header": "tr|Q9SVB9-1|F4JVE0_ARATH Computationally mapped isoform of TSL-kinase interacting-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JVE0-1" }, "locus": { "chromosome": "4", "start_pos": 18308854, "end_pos": 18312744, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G39380.1", "url": "https://www.ensemblgenomes.org/id/AT4G39380.1" }, { "database": "Ensembl Peptide", "id": "AT4G39380.1", "url": "https://www.ensemblgenomes.org/id/AT4G39380.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 205, "start_aa": "Thr", "end_pos": 205, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr205", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "Q9SVB9", "url": "https://www.uniprot.org/uniprotkb/Q9SVB9" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9SVB9", "url": "https://www.uniprot.org/uniprotkb/Q9SVB9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G39380", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G39380", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F4JVE0", "url": "https://www.uniprot.org/uniprotkb/F4JVE0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JVE0", "url": "https://www.uniprot.org/uniprotkb/F4JVE0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "pattern specification process", "id": "GO:0007389", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007389", "evidence": [ { "database": "UniProtKB", "id": "F4JVE0", "url": "https://www.uniprot.org/uniprotkb/F4JVE0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 306, "end_pos": 308, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 386, "end_pos": 388, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JVE0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 534, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JVE0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JVE0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 205 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 167, "end_pos": 169 }, { "start_pos": 195, "end_pos": 197 }, { "start_pos": 296, "end_pos": 298 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"https://www.ncbi.nlm.nih.gov/protein/NP_194426" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JVT8", "url": "https://www.uniprot.org/uniprotkb/F4JVT8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JVT8", "locus": {} } ], "crossref": [ { "id": "F4JVT8", "url": "https://alphafold.ebi.ac.uk/entry/F4JVT8", "database": "AlphaFoldDB", "categories": [] }, { "id": "828803", "url": "https://www.ncbi.nlm.nih.gov/gene/828803", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G26960", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G26960", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ENIGKCT", 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"https://www.ensemblgenomes.org/id/AT4G26960.1" }, { "database": "Ensembl Peptide", "id": "AT4G26960.1", "url": "https://www.ensemblgenomes.org/id/AT4G26960.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JVT8", "url": "https://www.uniprot.org/uniprotkb/F4JVT8" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JVT8", "url": "https://www.uniprot.org/uniprotkb/F4JVT8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G26960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G26960", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JVT8", "url": "https://www.uniprot.org/uniprotkb/F4JVT8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2, "end_pos": 4, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JVT8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 156, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JVT8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JVT8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { 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"https://www.ensemblgenomes.org/id/AT4G27010" } ] } } ], "crossref": [ { "id": "F4JVU5", "url": "https://alphafold.ebi.ac.uk/entry/F4JVU5", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G27010", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G27010", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828809", "url": "https://www.ncbi.nlm.nih.gov/gene/828809", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021714", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021714", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032436", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032436", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039844", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039844", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G27010", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G27010", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EVGNPRM", "url": "https://omabrowser.org/oma/group/EVGNPRM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13500", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13500", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13500:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13500:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16201", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16201", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001320074", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001320074", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G27010", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G27010", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JVU5", "url": "https://www.uniprot.org/uniprotkb/F4JVU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JVU5-1", "url": "https://www.uniprot.org/uniprotkb/F4JVU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JVU6", "url": "https://www.uniprot.org/uniprotkb/F4JVU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JVU6-1", "url": "https://www.uniprot.org/uniprotkb/F4JVU6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAESISSDLEDQGMVVDGGNRDVEVGKIPVMAFRPSHEAKLRELLHNICLHEIKLCSDAAKEFVKLLKGETGGDLLRLYFQSSPNFAELLEAWKLRHEKQGLSYIFSLIQTILSHPEGKDRSTDIGRAIDQFGRLLVEEKLDDIYKELNSKEGKQQSAALSLLASIVRRGPGMASEIAKKFDFKGFAKLAEYNTQGTEKVKKHSTRKAFVGFAISFLEVGKPGLLSSVLNKKEMYSKVLPGLGKDDDDTVASVLSTLKDKILVEESLISPGLRSVLFGIVTLKHLASISAREDAGIVNELAHDVLVKVCTDPSNGLMPDAKRKLRGNSDRLLMLMKGLRAAEIGYHRDLLLAIVRGRPSLASDFLDEFPYNVEDFSSPSWFSSISLAANLVSSVRTSCSFDFLNPDQRATPPSGGSDVQTIMKCICPRPFSRSLITKGMLHSDFLVKHGTLRFLLETLRLLDSFLTAWNLCSSHRCSVEQIQISLERNVMGEVSSFFPDSQVLLIVLKSLDGSSGTQKLSLKREAELDSGLVGRKKRIKRSEKDVLEEEAVDIVIGGVGSDKDIFLAEDNMDAHMTDQEDAEKEYLGIVSDIWISELCSNPIDSVEEAEMCFHIKLLDALKIYVRAVPNELEGSFDIFMKFLSNSFGMPVELQRALLSLLSEYISWTPKSQSDRGPTRIPPLMHKHLRVFINLLLFSPHNGVKDLAYNLAVAAMNSTGAFENNPSEIGAWFLFLPCFEKIKLPLELQEAVQSMSSVVVSFLCDAVSTVGNNLFKHWDIVRSSLSHLKGVSIGFSPLIICLLQKCVRLLNSESKTSLPEKSAISLYVCSTLKYLLQTQVDSKLLSCLIQSVLSEVVDESKDSLCEWRPLRMLLCFSQSLSNEKPIILHSRRTTGLPADSSFAETLDEIKRLVRSISPDEIAGIVKAFSSALICATPESILQNFASVMDVSWAFYGTPFSFLQSITFLEENFLGNLSKLSPDLFASGSEFTGSGNLCEGTVDSEIDFSGHSSVTEEIRSKMDNRDMESSAFSIFLKQAPFPVLLNAIMSMDISCLPEFPRISELLLLKVSQPKSGSIDSNIQLILFWLFQIRSSYKVQPAPVLHQLSEICLRLMKNLFSQISEPELVSGPSSNKLPASFAKWKHQVAETVLCHPVVMALLESPLDCGTLPPVQNVEIFSETSLTMGRLVFSEIDQHILNLLVSTCEHFLFDEKPPNLWKEDLRKNKSIIAFKDLVERLLLEFRVKFELCVGSQSYVSLLQPAQLIHALLRFISPFKLFNIAHSMLSKIDEEGLTSPNSSIILSLGLGIAGGAFEMLVLYSHQPTAKRGVYDLLWELEEKNYASNIIEKVYSMACKFSTSLDLDSADICLLKVCGGIFRGKHNQNYAVDPLVLKISLIVGRTPEDLIIHCINRASITRAKILFYLVESSPLHLLVFGHFFFSMLSKKQDDSALTDDQFIMLLPAVLSYLTSVIAKLEKPCNRCLDITSVYSNILINGFLQWPRFLARCIFEEKHEEILLSTTEDMETMFNASLIGKAVRMFQYHFSLTESPTKEDDLFKVFNSMFPLSSTGKEMLDYEIKEVDVQSVDQILNVAIRVVAKVTVSRICLFPEDSSMCHLKRAAGTCVKESSSKIGCNRAILSKPLLDALVNSWQCVVKKSDGSFKGNYEGKQDRCWSLCKSLENFILRSILQFLESMCEELVQLDSLPFLDRLMKSVLLYRFEDSKTLKILREIFSLLSRGKYSYAPYIQRLIYHSRFTPTISSLSISSSNTGELFRPVSSILNHLIILSPDSVRVKRCCLEAPKYAKQLEIVKILRVLLSNCGKDSGMKELLSDLHFLLLCSYGATLREIDLEIYKLMHDIKLIEAEQTLNVSETDYLWGKAALKIREGLSQDASDVCQVDLVEDVRQGLIKENLCVDPKICALTVLFFPYQRTTEKSENFYLYDDPINEVPVFSFNFQLIVLGYIEPVEFASLGLLAVAFVSMSSADLGMRKLGYETLQIFLDALEMGKDIVEGNILAFPICTEDFNWFCKGLMNCRKNKHVTGLRLLLMYVQNGVEEPWQRIPTVSAIFAAETSMILLDPSHEHYVPINKLLKSSSTLKLRGIPLFHDFFWSSAVNFRSQRFWELRLVYLGLKSDDDVQIYIKNSILETVISFSSSPLADDETKRLILQVVRKSVKFHKIARHLVENCGLFSWCSSFISNFTTKPIGDKDLHLVVVLEIITDVLASRNITEWLQRFGLEGLMEISSRLYKLLGGGLVSVQENGTSVDLILQILSATLKISQKRNMYQPHFTITIEGIFQLFEGVANFGSPQVEASAESGLITILMSTPPVDILCMDVDKLRRFLLWGTSTALKSDFKKGSKPSESHEDTKILIEGPQEETMVAKFLRWLSASVILGKSYSKASDSDPTFLSKTKPETLLTSLEYFKKRNLEDSMQNSEHIIGEVIVHLQQFLSTNYMFLLPSVVFALSLMLLHNDLGTGESDGDYKLIKSLCSKISSPPEAIPGWRWSYYQAWRDLSSEQATDLDKINELHACQHLLLIFSAMLGETPQESQQVLLRKSFDMSHVFEWERSLVET", "length": 2574, "header": "tr|F4JVU5-1|F4JVU5_ARATH Isoform 1 of Ribosome 60S biogenesis amino-terminal protein OS=Arabidopsis thaliana OX=3702 GN=EMB2788 PE=1 SV=2 CANONICAL=F4JVU5-1" }, "isoforms": [ { "isoform_ac": "F4JVU5-1", "url": "https://www.uniprot.org/uniprotkb/F4JVU5/entry", "sequence": { "sequence": "MAESISSDLEDQGMVVDGGNRDVEVGKIPVMAFRPSHEAKLRELLHNICLHEIKLCSDAAKEFVKLLKGETGGDLLRLYFQSSPNFAELLEAWKLRHEKQGLSYIFSLIQTILSHPEGKDRSTDIGRAIDQFGRLLVEEKLDDIYKELNSKEGKQQSAALSLLASIVRRGPGMASEIAKKFDFKGFAKLAEYNTQGTEKVKKHSTRKAFVGFAISFLEVGKPGLLSSVLNKKEMYSKVLPGLGKDDDDTVASVLSTLKDKILVEESLISPGLRSVLFGIVTLKHLASISAREDAGIVNELAHDVLVKVCTDPSNGLMPDAKRKLRGNSDRLLMLMKGLRAAEIGYHRDLLLAIVRGRPSLASDFLDEFPYNVEDFSSPSWFSSISLAANLVSSVRTSCSFDFLNPDQRATPPSGGSDVQTIMKCICPRPFSRSLITKGMLHSDFLVKHGTLRFLLETLRLLDSFLTAWNLCSSHRCSVEQIQISLERNVMGEVSSFFPDSQVLLIVLKSLDGSSGTQKLSLKREAELDSGLVGRKKRIKRSEKDVLEEEAVDIVIGGVGSDKDIFLAEDNMDAHMTDQEDAEKEYLGIVSDIWISELCSNPIDSVEEAEMCFHIKLLDALKIYVRAVPNELEGSFDIFMKFLSNSFGMPVELQRALLSLLSEYISWTPKSQSDRGPTRIPPLMHKHLRVFINLLLFSPHNGVKDLAYNLAVAAMNSTGAFENNPSEIGAWFLFLPCFEKIKLPLELQEAVQSMSSVVVSFLCDAVSTVGNNLFKHWDIVRSSLSHLKGVSIGFSPLIICLLQKCVRLLNSESKTSLPEKSAISLYVCSTLKYLLQTQVDSKLLSCLIQSVLSEVVDESKDSLCEWRPLRMLLCFSQSLSNEKPIILHSRRTTGLPADSSFAETLDEIKRLVRSISPDEIAGIVKAFSSALICATPESILQNFASVMDVSWAFYGTPFSFLQSITFLEENFLGNLSKLSPDLFASGSEFTGSGNLCEGTVDSEIDFSGHSSVTEEIRSKMDNRDMESSAFSIFLKQAPFPVLLNAIMSMDISCLPEFPRISELLLLKVSQPKSGSIDSNIQLILFWLFQIRSSYKVQPAPVLHQLSEICLRLMKNLFSQISEPELVSGPSSNKLPASFAKWKHQVAETVLCHPVVMALLESPLDCGTLPPVQNVEIFSETSLTMGRLVFSEIDQHILNLLVSTCEHFLFDEKPPNLWKEDLRKNKSIIAFKDLVERLLLEFRVKFELCVGSQSYVSLLQPAQLIHALLRFISPFKLFNIAHSMLSKIDEEGLTSPNSSIILSLGLGIAGGAFEMLVLYSHQPTAKRGVYDLLWELEEKNYASNIIEKVYSMACKFSTSLDLDSADICLLKVCGGIFRGKHNQNYAVDPLVLKISLIVGRTPEDLIIHCINRASITRAKILFYLVESSPLHLLVFGHFFFSMLSKKQDDSALTDDQFIMLLPAVLSYLTSVIAKLEKPCNRCLDITSVYSNILINGFLQWPRFLARCIFEEKHEEILLSTTEDMETMFNASLIGKAVRMFQYHFSLTESPTKEDDLFKVFNSMFPLSSTGKEMLDYEIKEVDVQSVDQILNVAIRVVAKVTVSRICLFPEDSSMCHLKRAAGTCVKESSSKIGCNRAILSKPLLDALVNSWQCVVKKSDGSFKGNYEGKQDRCWSLCKSLENFILRSILQFLESMCEELVQLDSLPFLDRLMKSVLLYRFEDSKTLKILREIFSLLSRGKYSYAPYIQRLIYHSRFTPTISSLSISSSNTGELFRPVSSILNHLIILSPDSVRVKRCCLEAPKYAKQLEIVKILRVLLSNCGKDSGMKELLSDLHFLLLCSYGATLREIDLEIYKLMHDIKLIEAEQTLNVSETDYLWGKAALKIREGLSQDASDVCQVDLVEDVRQGLIKENLCVDPKICALTVLFFPYQRTTEKSENFYLYDDPINEVPVFSFNFQLIVLGYIEPVEFASLGLLAVAFVSMSSADLGMRKLGYETLQIFLDALEMGKDIVEGNILAFPICTEDFNWFCKGLMNCRKNKHVTGLRLLLMYVQNGVEEPWQRIPTVSAIFAAETSMILLDPSHEHYVPINKLLKSSSTLKLRGIPLFHDFFWSSAVNFRSQRFWELRLVYLGLKSDDDVQIYIKNSILETVISFSSSPLADDETKRLILQVVRKSVKFHKIARHLVENCGLFSWCSSFISNFTTKPIGDKDLHLVVVLEIITDVLASRNITEWLQRFGLEGLMEISSRLYKLLGGGLVSVQENGTSVDLILQILSATLKISQKRNMYQPHFTITIEGIFQLFEGVANFGSPQVEASAESGLITILMSTPPVDILCMDVDKLRRFLLWGTSTALKSDFKKGSKPSESHEDTKILIEGPQEETMVAKFLRWLSASVILGKSYSKASDSDPTFLSKTKPETLLTSLEYFKKRNLEDSMQNSEHIIGEVIVHLQQFLSTNYMFLLPSVVFALSLMLLHNDLGTGESDGDYKLIKSLCSKISSPPEAIPGWRWSYYQAWRDLSSEQATDLDKINELHACQHLLLIFSAMLGETPQESQQVLLRKSFDMSHVFEWERSLVET", "length": 2574, "header": "tr|F4JVU5-1|F4JVU5_ARATH Isoform 1 of Ribosome 60S biogenesis amino-terminal protein OS=Arabidopsis thaliana OX=3702 GN=EMB2788 PE=1 SV=2 CANONICAL=F4JVU5-1" }, "locus": { "chromosome": "4", "start_pos": 13557974, "end_pos": 13568439, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G27010.2", "url": "https://www.ensemblgenomes.org/id/AT4G27010.2" }, { "database": "Ensembl Peptide", "id": "AT4G27010.2", "url": "https://www.ensemblgenomes.org/id/AT4G27010.2" } ] } }, { "isoform_ac": "F4JVU6-1", "url": "https://www.uniprot.org/uniprotkb/F4JVU6/entry", "sequence": { "sequence": "MASEIAKKFDFKGFAKLAEYNTQGTEKVKKHSTRKAFVGFAISFLEVGKPGLLSSVLNKKEMYSKVLPGLGKDDDDTVASVLSTLKDKILVEESLISPGLRSVLFGIVTLKHLASISAREDAGIVNELAHDVLVKVCTDPSNGLMPDAKRKLRGNSDRLLMLMKGLRAAEIGYHRDLLLAIVRGRPSLASDFLDEFPYNVEDFSSPSWFSSISLAANLVSSVRTSCSFDFLNPDQRATPPSGGSDVQTIMKCICPRPFSRSLITKGMLHSDFLVKHGTLRFLLETLRLLDSFLTAWNLCSSHRCSVEQIQISLERNVMGEVSSFFPDSQVLLIVLKSLDGSSGTQKLSLKREAELDSGLVGRKKRIKRSEKDVLEEEAVDIVIGGVGSDKDIFLAEDNMDAHMTDQEDAEKEYLGIVSDIWISELCSNPIDSVEEAEMCFHIKLLDALKIYVRAVPNELEGSFDIFMKFLSNSFGMPVELQRALLSLLSEYISWTPKSQSDRGPTRIPPLMHKHLRVFINLLLFSPHNGVKDLAYNLAVAAMNSTGAFENNPSEIGAWFLFLPCFEKIKLPLELQEAVQSMSSVVVSFLCDAVSTVGNNLFKHWDIVRSSLSHLKGVSIGFSPLIICLLQKCVRLLNSESKTSLPEKSAISLYVCSTLKYLLQTQVDSKLLSCLIQSVLSEVVDESKDSLCEWRPLRMLLCFSQSLSNEKPIILHSRRTTGLPADSSFAETLDEIKRLVRSISPDEIAGIVKAFSSALICATPESILQNFASVMDVSWAFYGTPFSFLQSITFLEENFLGNLSKLSPDLFASGSEFTGSGNLCEGTVDSEIDFSGHSSVTEEIRSKMDNRDMESSAFSIFLKQAPFPVLLNAIMSMDISCLPEFPRISELLLLKVSQPKSGSIDSNIQLILFWLFQIRSSYKVQPAPVLHQLSEICLRLMKNLFSQISEPELVSGPSSNKLPASFAKWKHQVAETVLCHPVVMALLESPLDCGTLPPVQNVEIFSETSLTMGRLVFSEIDQHILNLLVSTCEHFLFDEKPPNLWKEDLRKNKSIIAFKDLVERLLLEFRVKFELCVGSQSYVSLLQPAQLIHALLRFISPFKLFNIAHSMLSKIDEEGLTSPNSSIILSLGLGIAGGAFEMLVLYSHQPTAKRGVYDLLWELEEKNYASNIIEKVYSMACKFSTSLDLDSADICLLKVCGGIFRGKHNQNYAVDPLVLKISLIVGRTPEDLIIHCINRASITRAKILFYLVESSPLHLLVFGHFFFSMLSKKQDDSALTDDQFIMLLPAVLSYLTSVIAKLEKPCNRCLDITSVYSNILINGFLQWPRFLARCIFEEKHEEILLSTTEDMETMFNASLIGKAVRMFQYHFSLTESPTKEDDLFKVFNSMFPLSSTGKEMLDYEIKEVDVQSVDQILNVAIRVVAKVTVSRICLFPEDSSMCHLKRAAGTCVKESSSKIGCNRAILSKPLLDALVNSWQCVVKKSDGSFKGNYEGKQDRCWSLCKSLENFILRSILQFLESMCEELVQLDSLPFLDRLMKSVLLYRFEDSKTLKILREIFSLLSRGKYSYAPYIQRLIYHSRFTPTISSLSISSSNTGELFRPVSSILNHLIILSPDSVRVKRCCLEAPKYAKQLEIVKILRVLLSNCGKDSGMKELLSDLHFLLLCSYGATLREIDLEIYKLMHDIKLIEAEQTLNVSETDYLWGKAALKIREGLSQDASDVCQVDLVEDVRQGLIKENLCVDPKICALTVLFFPYQRTTEKSENFYLYDDPINEVPVFSFNFQLIVLGYIEPVEFASLGLLAVAFVSMSSADLGMRKLGYETLQIFLDALENCRKNKHVTGLRLLLMYVQNGVEEPWQRIPTVSAIFAAETSMILLDPSHEHYVPINKLLKSSSTLKLRGIPLFHDFFWSSAVNFRSQRFWELRLVYLGLKSDDDVQIYIKNSILETVISFSSSPLADDETKRLILQVVRKSVKFHKIARHLVENCGLFSWCSSFISNFTTKPIGDKDLHLVVVLEIITDVLASRNITEWLQRFGLEGLMEISSRLYKLLGGGLVSVQENGTSVDLILQILSATLKISQKRNMYQPHFTITIEGIFQLFEGVANFGSPQVEASAESGLITILMSTPPVDILCMDVDKLRRFLLWGTSTALKSDFKKGSKPSESHEDTKILIEGPQEETMVAKFLRWLSASVILGKSYSKASDSDPTFLSKTKPETLLTSLEYFKKRNLEDSMQNSEHIIGEVIVHLQQFLSTNYMFLLPSVVFALSLMLLHNDLGTGESDGDYKLIKSLCSKISSPPEAIPGWRWSYYQAWRDLSSEQATDLDKINELHACQHLLLIFSAMLGETPQESQQVLLRKSFDMSHVFEWERSLVET", "length": 2374, "header": "tr|F4JVU6-1|F4JVU6_ARATH Computationally mapped isoform of Ribosome 60S biogenesis amino-terminal protein OS=Arabidopsis thaliana OX=3702 GN=EMB2788 PE=1 SV=1 CANONICAL=F4JVU5-1" }, "locus": { "chromosome": "4", "start_pos": 13557974, "end_pos": 13568296, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G27010.1", "url": "https://www.ensemblgenomes.org/id/AT4G27010.1" }, { "database": "Ensembl Peptide", "id": "AT4G27010.1", "url": "https://www.ensemblgenomes.org/id/AT4G27010.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 266, "end_pos": 266, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JVU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVU5" } ], "site_lbl": "Ser266" }, { "start_pos": 450, "end_pos": 450, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JVU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JVU5" } ], "site_lbl": "Thr450" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JVU5", "url": "https://www.uniprot.org/uniprotkb/F4JVU5" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants.", "journal": "Mol. Cell. Proteomics", "date": "2007", "authors": "Maor Rudy, Jones Alex, N\u00fchse Thomas S, Studholme David J, Peck Scott C, Shirasu Ken", "evidence": [ { "database": "UniProtKB", "id": "F4JVU5", "url": "https://www.uniprot.org/uniprotkb/F4JVU5" } ], "reference": [ { "type": "PubMed", "id": "17272265", "url": "https://glygen.org/publication/PubMed/17272265" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "F4JVU5", "url": "https://www.uniprot.org/uniprotkb/F4JVU5" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JVU5", "url": "https://www.uniprot.org/uniprotkb/F4JVU5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G27010", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G27010", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JVU5", "url": "https://www.uniprot.org/uniprotkb/F4JVU5" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F4JVU5", "url": "https://www.uniprot.org/uniprotkb/F4JVU5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000463", "evidence": [ { "database": "UniProtKB", "id": "F4JVU5", "url": "https://www.uniprot.org/uniprotkb/F4JVU5" } ], "pmid": "" }, { "name": "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000466", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000466", "evidence": [ { "database": "UniProtKB", "id": "F4JVU5", "url": "https://www.uniprot.org/uniprotkb/F4JVU5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1223, "end_pos": 1225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1295, "end_pos": 1297, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1527, "end_pos": 1529, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1868, "end_pos": 1870, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2199, "end_pos": 2201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2227, "end_pos": 2229, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2261, "end_pos": 2263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 715, "end_pos": 717, "annotation": "n_glycosylation_sequon" }, { "start_pos": 973, "end_pos": 975, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JVU5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 2574, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JVU5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JVU5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JVU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JVU5" }, { "id": "PF16201", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16201" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "URB1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 1974, "end_pos": 2192, "start_aa": "Leu", "end_aa": "Trp", "glycosite_overlap": [] }, { "evidence": [ { "id": "F4JVU5", "database": 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Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, 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T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JWQ4", "url": "https://www.uniprot.org/uniprotkb/F4JWQ4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JWQ4", "url": "https://www.uniprot.org/uniprotkb/F4JWQ4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G25270", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G25270", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JWQ4", "url": "https://www.uniprot.org/uniprotkb/F4JWQ4" } ], "pmid": "" }, { "name": "BAT3 complex", "id": "GO:0071818", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071818", "evidence": [ { "database": "UniProtKB", "id": "F4JWQ4", "url": "https://www.uniprot.org/uniprotkb/F4JWQ4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "polyubiquitin 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JWS2-1", "uniprot_ac": "F4JWS2", "uniprot_id": "F4JWS2_ARATH", "mass": { "chemical_mass": 37077.0, "monoisotopic_mass": 37077.0 }, "refseq": { "ac": "NP_568471", "name": "hypothetical protein (DUF239)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568471" }, "gene_names": [], "protein_names": [ { "name": "Neprosin PEP catalytic domain-containing protein", "type": "recommended", "evidence": [ { "id": "F4JWS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JWS2/entry#names_and_taxonomy" } ] }, { "name": "hypothetical protein (DUF239)", "type": "synonym", "evidence": [ { "id": "NP_568471", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568471" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": 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"https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G47340", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G47340", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AEIACEN", "url": "https://omabrowser.org/oma/group/AEIACEN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11247", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11247", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11247:SF79", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11247:SF79", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199545", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199545", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G47340", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G47340", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JX42", "url": "https://www.uniprot.org/uniprotkb/F4JX42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JX42-1", "url": "https://www.uniprot.org/uniprotkb/F4JX42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKGLKRSCVMVVVAFLAKVDISVSVPFIMLHGIASQCSDDTNANFTQLLTNLSGSPGFCLEIGNGVINSMFLPLTQQAEIACENVKEMKELSQGYNIVGRSQGNLVARGLIEFCDGGPPVFNYISLAGPHAGISSLPRGLCGLTSDPACKKFNELIKGALYSETIQDHLAPSGYYKIPNDMKQYLERSKYLPKLNNEIPNQRNQTYKDRFTSLHNLVLVKFQDDEVITPNDSTWFGFYPDGEFETLLSANQTKLYTEDWIGLKTLDDAGKVKFVSVPGGHVRMAEEDVVKYVVPYLQNQQPAAQSFNRKTKEPLHP", "length": 317, "header": "tr|F4JX42-1|F4JX42_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MQL5.20 PE=4 SV=1 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H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JX42", "url": "https://www.uniprot.org/uniprotkb/F4JX42" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JX42", "url": "https://www.uniprot.org/uniprotkb/F4JX42" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G47340", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G47340", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": 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"NP_199551", "name": "sphingomyelin phosphodiesterase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199551" }, "gene_names": [ { "name": "MQL5.26", "type": "recommended", "evidence": [ { "id": "F4JX48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JX48" } ] }, { "name": "MQL5.26", "type": "synonym", "evidence": [ { "id": "NP_199551", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199551" } ] }, { "name": "MQL5_26", "type": "synonym", "evidence": [ { "id": "NP_199551", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199551" }, { "id": "F4JX48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JX48" } ] } ], "protein_names": [ { "name": "Sphingomyelin phosphodiesterase", "type": "synonym", "evidence": [ { "id": "F4JX48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JX48/entry#names_and_taxonomy" } ] }, { "name": "sphingomyelin phosphodiesterase", "type": "synonym", "evidence": [ { "id": "NP_199551", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199551" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JX48", "url": "https://www.uniprot.org/uniprotkb/F4JX48" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MQL5.26", "url": "https://www.uniprot.org/uniprotkb/F4JX48", "locus": {} } ], "crossref": [ { "id": "F4JX48", "url": "https://alphafold.ebi.ac.uk/entry/F4JX48", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G47400", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G47400", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834787", "url": "https://www.ncbi.nlm.nih.gov/gene/834787", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G47400", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G47400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ECNLYLR", "url": "https://omabrowser.org/oma/group/ECNLYLR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31801", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31801", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31801:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31801:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_199551", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199551", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G47400", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G47400", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JX48", "url": "https://www.uniprot.org/uniprotkb/F4JX48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JX48-1", "url": "https://www.uniprot.org/uniprotkb/F4JX48-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRGTFAFFFFLVLIFFLLFCPSLVFLFPFTRRDLSRLAFQTLLLRRKPLLYLSIKTLVSFSPSYLAMLPHSYTVDSLSQSQDLASAILSASTPSSISAACSSVESFLQSHTPDQCRHFFSVTFPSLICKIFGFGDTTAASPAQSSSLRPNGWIDVISAANDLDLAERVYNLLSPSGILMSSIFAVDKLALVKYVFPTERLPEYARFMLSSEKDRIALSNLCPFLKGKIEEDSVRGSLCEVRLNVFEYYMFWLSYYPVCRGNNEISAVNLNPIQKRNKFRLENWTLIKGFPGSNKRDSDQKLECNLYIRLLYSYLKAFVPVFDLNAHQPYRSSLLHYGNGYDGSVMTRAEFLVNVFVHYWLVENDFSPFPVVTAKSFGVAPPFRSAVEEIPPTCGLEEVVKLLVKYLNLSWVTSGVGSENYIEYGESPRWKTPTSGSSSHVANLSLRPLTSWNTHLQRPLYRYILRSFLFCPIGSSIKNASQVFSIWVTYLEPWMISLDDFSVFEPALSGSVKDMKKEDSYESRVCGYTPLWQSYVISNYLYYSSLVMHFIGFAHKFLHTDPEIITQMALKVMSTLTSSKELLVLMKNIDKAFHSKQTGPGNSKVNELSRFSPSIREQLKDWEDGLCESNADGSYLHENWNKDLKLFSDGEDGGQQLLQLFILRAEAELQTVSDKNLTEALKCVDSLKSAVSNFFGGHVVKPIAFFLEPDHPQKNRDELFKPRGAGNQTAGGVKYKGDWMTRPVSEDEVALMAKLLINMSIWLNERLGLNKSETSNDKKENSESVSYVDVSGEDVGNVAGPGDAAKMLLRGMVMVCGTVLQLMRRFGIRVNLRVMASKKFLMLLFLYVLFLVVKRVVTRMIW", "length": 862, "header": "tr|F4JX48-1|F4JX48_ARATH Isoform 1 of Sphingomyelin phosphodiesterase OS=Arabidopsis thaliana OX=3702 GN=MQL5.26 PE=1 SV=1 CANONICAL=F4JX48-1" }, "isoforms": [ { "isoform_ac": "F4JX48-1", "url": "https://www.uniprot.org/uniprotkb/F4JX48/entry", "sequence": { "sequence": 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"categories": [ "Protein Classification", "Other" ] }, { "id": "NP_200794", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200794", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G59860", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G59860", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JXD2", "url": "https://www.uniprot.org/uniprotkb/F4JXD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JXD2-1", "url": "https://www.uniprot.org/uniprotkb/F4JXD2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKADPRKETGIKLVAVEISLTFGNRKWQPHKNSGAKDEEAKFNKRTKYKMRIRPRSSISKRRRLIGGKTLTCVSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAKEVEAPTTSLKSNKD", "length": 157, "header": "tr|F4JXD2-1|F4JXD2_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN=MMN10.9 PE=4 SV=1 CANONICAL=F4JXD2-1" }, "isoforms": [ { "isoform_ac": "F4JXD2-1", "url": "https://www.uniprot.org/uniprotkb/F4JXD2/entry", "sequence": { "sequence": "MKADPRKETGIKLVAVEISLTFGNRKWQPHKNSGAKDEEAKFNKRTKYKMRIRPRSSISKRRRLIGGKTLTCVSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAKEVEAPTTSLKSNKD", "length": 157, "header": "tr|F4JXD2-1|F4JXD2_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN=MMN10.9 PE=4 SV=1 CANONICAL=F4JXD2-1" }, "locus": { "chromosome": "5", "start_pos": 24113462, "end_pos": 24114449, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G59860.1", "url": "https://www.ensemblgenomes.org/id/AT5G59860.1" }, { "database": "Ensembl Peptide", "id": "AT5G59860.1", "url": "https://www.ensemblgenomes.org/id/AT5G59860.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JXD2", "url": "https://www.uniprot.org/uniprotkb/F4JXD2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JXD2", "url": "https://www.uniprot.org/uniprotkb/F4JXD2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G59860", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G59860", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F4JXD2", "url": "https://www.uniprot.org/uniprotkb/F4JXD2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "spliceosomal complex", "id": "GO:0005681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005681", "evidence": [ { "database": "UniProtKB", "id": "F4JXD2", "url": "https://www.uniprot.org/uniprotkb/F4JXD2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "F4JXD2", "url": "https://www.uniprot.org/uniprotkb/F4JXD2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JXD2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 157, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JXD2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JXD2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JXD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JXD2" }, { "id": "PS50102", "database": "PROSITE", 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"synonym", "evidence": [ { "id": "NP_201396", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_201396" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JXM9", "url": "https://www.uniprot.org/uniprotkb/F4JXM9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ROG2", "url": "https://www.uniprot.org/uniprotkb/F4JXM9", "locus": {} } ], "crossref": [ { "id": "F4JXM9", "url": "https://alphafold.ebi.ac.uk/entry/F4JXM9", "database": "AlphaFoldDB", "categories": [] }, { "id": "836725", "url": "https://www.ncbi.nlm.nih.gov/gene/836725", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021773", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021773", "database": "InterPro", 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"comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JXM9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JXM9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser752" }, { "start_pos": 825, "end_pos": 825, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JXM9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JXM9" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": 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Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", 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Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "F4JXM9", "url": "https://www.uniprot.org/uniprotkb/F4JXM9" }, { "database": "iPTMnet", "id": "F4JXM9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JXM9" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4JXM9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JXM9" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": 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Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "F4JXM9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JXM9" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4JXM9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JXM9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4JXM9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JXM9" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4JXM9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JXM9" } ], "reference": [ { "type": "PubMed", 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Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "F4JXM9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JXM9" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "F4JXM9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JXM9" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4JXM9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JXM9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", 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"MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDHEYPKCRSKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDIIASERAAALCNVCELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELSFEHAAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQERKQHAKALCNHDAAVVYPSPDPLETPTGVLDFYGQRPWRQGILSFDLSDPEKEKAGILAIQLKERSVVHSEMIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVMCDYRSEAWWTLLTSILTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLMNVLMNESPDPEPDCDALAVKTAQKLWADRVSLAGSNVFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDVYLKADCPHPIRFSKLCVSFNNQGYNQFCVLEEASKASEVLENLTQGKMCLVPGKTRKLLFKFVAKTEDVGKKIEITSVDLFLGSESGRCVVLSWQGGGGDAASSQEALQAARSFKRRPKLPDDEVHWDSIIVQASTMIISRVPNISVHLRHEPPALMNEMYCLVVTVQSQEKSQIRDVKLTAGLKPGQDANLTQKTHVTLHGAELCDESYPALLTDIPVGDLNPGEQLEKTVYVRCGTVGSRMFLVYVSYLINTTVEGKGIMCKCHKDETVTIETVFPFDVAVRFVSTKFEHLERVYADIPFLLMTDILSASPWALTIVSSELQLAPSMAAMDHLESQIDKVVLQTGESASECFCLRCPSAGNLEGGVATGHYIISWKRSSGMENIPAISTIITLPHVIVENIPLHVNADLPSFGRVRESLPVRYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTKQEMLYNFYPLMAGYQQLPSLNINLLRFPNFTNQLLRRFIPTSIFVKPQGRLLEDTSIAAA", "length": 1133 }, "evidence": [ { "id": "F4JXM9", "url": "https://omabrowser.org/oma/group/F4JXM9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A3L7IJD9-1", "protein_name": "Trafficking protein particle complex subunit 11", "gene_name": "Trappc11", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDHEYPKCRSKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDIIASERAAALCNVCELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKVGSAELSFEHAAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQERKQHARALCNHDASVMYPSPDPLETQTGVLDFYGQRPWRQGVLSFDLSDPEKEKAGVLAIQLLERSVVHSEIIISLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVMCDYRSEGWWTLLTSILTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLMNVLMNESPDPEPDCDVLAVKTAQKLWADRVSLAGSNVFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDVYLKADCPHPIRFSKLCVSFNNQAYNQFCVLEEASKASEVLENLTQGKMCLVPGKTRKLLFKFVAKTEDVGKKIEITSVDLVLGSESGRCVVLSWQGGGGDAASSQEALQAARSFKRRPKLPNNEVHWDSIIIQASTMIISRVPNISVHLRHEPPALMNEMYCLVVTVQSHEKSQIRDVKLTAGLKPGQDANLTQKTHVTLHGAELCDESYPALLTDIPVGDLHPGEQLEKTVYVRCGTVGSRMFLVYVSYLINTTVEGKEIVCKCHKDETVTIETVFPFDVAVRFVSTKFEHLERVYADIPFLLMTDVLSASPWALTIVSSELQLAPSMTTMDHLESQVDKVVLQTGESASECFCLRCPSAGNVEGGVATGHYIISWKRTSSMENIPVISTVITLPHVIVENIPLHVNADLPSFGRVRESLPVRYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTKQEMLYNFYPLMAGYQQLPSLNINLLRFPSFTNQLLRRFLPTSIFVKPQGRLLDDASIAAA", "length": 1133 }, "evidence": [ { "id": "F4JXM9", "url": "https://omabrowser.org/oma/group/F4JXM9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "B2RXC1-1", "protein_name": "Trafficking protein particle complex subunit 11", "gene_name": "Trappc11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDHEYPKCRSKRTSYEWYIPKGVLKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNVCELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDTQNALKNYRIAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELAFEHAAWMAKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQERKQHAKALCNHDAAVMYPNPDPLETQSGVLDFYGQRPWRQGILSFDLSDPEKEKAGILAIQLKERSVVHSEIIIALLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVMCDYRSEAWWTLLTSILTTALKCSYLMAQLKDYITYSLELLGRASTLKDEQKSRIEKNLMNVLMNESPDPEPDCDVLAVKTAQKLWADRVSLAGSNVFQIGVQDFVPFVQCKAKFHAPSFHVDVPVEFDVFLKADCPHPIRFSKLCVSFNNQVYNQFCVLEEASKASEVLENLTQGKMCLVPGKTRKLSFKFVAKTEDVGKKIEITSVDLFLGSESGRCVVLSWQGGGGDAASSQEALQAARSFKRRPKLAEDEIHWDSVIIQASTMIISRVPNISVHLRHEPPALMNEMYCLVVTVQSHEKSPIRDVKLTAGLKPGQDANLTQKTHVTLHGAELCDESYPALLTDIPVGDLHPGEQLEKTVYVRCGTVGSRMFLVYVSYLINTTVEGKEIICKCHKDDTVTIETVFPFDVAVRFVSTKFEHLERVYADIPFLLMTDVLSASPWALTIVSSELQLAPSMTAMDHLESQIDKVVLQTGESASECFCLRCPSAGNIEGGVATGHYIISWKRASVVESIPAVSTVITLPHVIAENIPLHVNADLPSFGRVRESLPVRYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTKQEMLYNFYPLMAGYQQLPSLNINLLRFPNFTNQLLRRFIPTSIFVKPQGRLLEDTSIAAA", "length": 1133 }, "evidence": [ { "id": "F4JXM9", "url": "https://omabrowser.org/oma/group/F4JXM9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1MXL8-1", "protein_name": "Trafficking protein particle complex subunit 11", "gene_name": "TRAPPC11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDHEYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELAFEHAAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQERKQLAKALCNHEASVTYPNPDPLETQAGVLDFYGQRSWRQGVLSFDLSDPEKEKVGILAIQLKERSVVHSEVIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVMCDYRSEGWWTLLTSILTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLINVLMNESPDPEPDCDILAVKTAQKLWVDRISLAGSNVFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDVYLKADCPHPIRFSKLCISFNNQEYNQFCVIEEASKASDVLENLTQGKMCLVPGKTRKFLFKFVAKTEDVGKKIEITSVDLVLGSEAGRCVVLNWQGGGGDAASTQEALQASRSFKRRPRLPDSEVHWDGIVIQASTMIISRVPNISVHLRHDPPALTNEMYCLVVTVQSHEKSPIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCDESYPALLTDIPVGDLQPGEQLEKAVYVRCGTVGSRMFLVYVSYLINTAIEGKETVCKCHKDETVTIETVFPFDVAVKFVSTKFEHLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTPVDQLESQVDRVVLQTGESASECFCLRCPSVGNVEGGVATGHYVISWKRTSATDGVPVISTVITLPHVIVENIPLHVNADLPSFGRVRESLPVRYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNINLLRFPNFTNQLLRRFIPTSIFVKPQGRLVDDASIAAA", "length": 1133 }, "evidence": [ { "id": "F4JXM9", "url": "https://omabrowser.org/oma/group/F4JXM9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q1RLX4-1", "protein_name": "Trafficking protein particle complex subunit 11", "gene_name": "trappc11", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSPARWDLPPELCCRPMAFVALTGLDVVYNAIHRAIWDAFCANRRADRVPISFKVLPGDHEYPKCRTKRTSYEWYIPKGILKTGWMNKHLNLVPALVVLFYELDWDDPQWKEKQSECATKVEIVRTSLQGRNTKVAVVLIQKKTPLPPGEDLVASERASALCGACDLSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYNEIRRVKSHKEFLNKTTHQLLFVRHQFKMGFFSELKQDTQNALKYYRTAYSLVHELRAHETNVLEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELAFEHTAWMSKQFQSFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQERKQQAGQLCSHEPGVGYPAPDPLETTSGALDFYGQRPWRQGHQSIDPPDSEKEKQGILALQVKERDVLHSELIIALLSNAVAQFKKYKCPRMKSHLMVQMGEEYYHAKDYTKALKLLDYVMCDYRTERWWSLLTSIVCTALKCSYLMGQVKDYITYSMELVGRASILSEEQKSRIEKNLIKVLMNEVPEPEPDCDPVSVKAAQSLWSDRVSLAGNNEFTIDVQDYVPFVQCKAKFLSPSFHIDEPVQLHVYVRADCPHPVRFSKLCVSLSNQEYNQYCLLEDAYKGKDILEPSSQENMCLVPGKTRKYCFNFVAKTEDVGKKIEITSVGLMLGRETGRYVYLNWRGGWGDAASSHESLQASRSFKRRTRLPEQHVDWDAVSVQSSTMIISRVPKISVQLTHEPPALTNEMFCMTVTIKSEEDTVGKDIKLTAGLKPGQDANLTQSTQITLNGSEVCDDSHPALLPDIPLGDLQPGQKIVKPLYIRCVSTGSRIFLFHVAYSVSATVEGKDITCKCHKDETVTVETVVPFEVAMKFVSSKFEHLERVYVDIPFLLMMDILSASPWPIELVESEVQLASSMTAIDQPQSQVEGVTLQTSECASECFLLKCPPVQNGTSTVASGHYIISWKRKSTFTETSVVRTVITLPHVMVENIPLYVHAEVPSFGRVRESLPVRYHLENRTGLVQDVEISVEPSDAFMFSGLKQVRMRILPGAEQEMLYNFYPLMAGYQVLPQLNINLLRFPNISSQLLRRFLPSRIFVKPQGRNGDASIEAA", "length": 1132 }, "evidence": [ { "id": "F4JXM9", "url": "https://omabrowser.org/oma/group/F4JXM9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q54KR2-1", "protein_name": "DUF1683 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNELPDDLVLSPQPLIGLIGCQSLHSQIIDCLSTKNVTDFERIHPTTPSNNNTPILTSTIGGDNRRNSGQYSSSPSIDPFSILHNNNNNNTSNYSNSPSSLSNQLGELSLQQKSLSQFDELWKSPTQKVGTPILTSAATGGEAGGWRFQNSNIPLFKTVPLETDSLSFKKEKKVEVNPHPMGILKANWIHKHTFSIPSVVSLFLQWPDDKNNSKAHDQMLQQVDLVRTNMKSRNIKLIVIIVTSIVLDHEEKVNTIRKKADIDPKYFLFLNKQDIKPFVKKWERLALELSEQYYKEMCQYTKSQIAKSNHPFLSIRYNFKIAFYSEFFRGDNSTSLKYYRDCYNLLNYKSNNDSRGIRFAEIRSLASFFNFKICKISMLNSDIATTTTTPTNTTPNTPNSITTNPSISITPSIPILATTTLTTSTPGGTILSPTGTPGMMQQPSSQQQQQAQFSTSPLQSQYQPSYLQQQSLQPSQPQQQIQQSGTGFFYQQQQQSQQSQQSQQQILLQQQQNQFEKQIKLIQDSLNQFEKHIKTFKIYMGPAEKEFTHCIWLAREYQIFAELLELCPSIIRSNFNTNPGFYYQISAKHQGNRRDSFKALSNHYKENVNVLEYRDIKPKFDLSNLTYIGQPPPVGSHPLDDNNNNNNNTNNTNNISNNNNTQLQTYEEQLTIADENDLSKSIAIELSLNYTNLIIKTLVKAYDQSTVSGNHRILSFIESLIAYEYFISKQYDLALKYYNKNAFTYRREKWTTLLTHSLSMLLKSVHYLNLPTNYIGYALDYLSPELNNTVADRANIQNTIIHILTDGAQKLSPPLSLEKSLDINMDHVHPLLDCRVQFPSSFTFTNSTTEFYVVIGSHFPNPIRFSALKVIFSEKSYNKSIHDKQPIQSPINQSTIKRDDHSRQDLIFLPDESRLFTFKLEVAKEKMELECLSVILELGNIGSPTKTINFVWNVQEWAIKSDETEIEKKIKDPSSLLISTTTTPPIQNKLKDKNIKTTQQQQQQQPPKTLEKLNPYKKFLERSSIRILDHESLIQIKCNHSSPAIVNEFYEIELEIINNDAEIKGGTIRFEIQQSQQTTTLLQQNPQQPLPQTQHSHHHHQQQQQQQQQQLQQQQLQQQQQQQQLQQQQQSVNIININNQSCEKGIYLEPNRSTPLSEMKLTTIKETKSFKKMFYVYSSVVDENKLLISISYETKTGEISHTSKLFTIPVVVGFNTQFQFFNEHLQLITDLYDQGVQTRENLLLLSEIKSQLPFNIIIENTKLSISTAAESARNATLLSPNVANNNPNTPNNNPNNNNPNNNPNNPNNNSGGVNNNIINNLNMILDDSINNLPVAQLLSDSNKLLKDVELSKNTTYSGWFNLIPLVISESISFGSFIIEWRRKGQSSKIISTLPIQLPYIRTTPNPFLAKVHVPSFGIVGQPLTQSIIIKNNTNFLQEFDLQVINPPSYGNSDIPFFFSGDKQSTFSIHPDSTHEIKHILLPLVAGKLNLPHFKIISKRFNKELSKTKNTNNFIFVKPNLNWNQ", "length": 1524 }, "evidence": [ { "id": "F4JXM9", "url": "https://omabrowser.org/oma/group/F4JXM9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5ZI89-1", "protein_name": "Trafficking protein particle complex subunit 11", "gene_name": "TRAPPC11", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTPSQWDLPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDHEYPKCRTKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNACDLSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNMLEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELAFEHAAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQERKQLASMLCNHDSSVVYPNPDPLETQTGVLDFYGQRPWRQGTLSFDLSDPEKEKMGILSLQLKERNVLHSELIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYFAKDYAKALKLLDYVMCEYRSEGWWTLLTSILTTALKCSYLMAQIKDYITYSLELLGRASTLKDDQKSRIEKNLIKVLMNESPDPEPDCDAAAVKASQKLWSDRVSLAGSNVFTIEVQDFIPFVQCKAKFLAPSFHVDVPVQFDIYLRADCPHPIRFSKLCISFNNQDYNQYCVVEEAYQKSDILEQSSQGTMCLVPGKTRKFTFKFVAKTEDVGKKIEITSVDLILGSESGRCVILNWRGGGGDAASSQEALQAARSFRRRPKLPDNEVHWDSLAIQASTMIISRVPNISVQLRHEPPALTNEMYCLVVTIESHEETVAKDVKLTAGLKPGQDANLTQKTQVTLRGTDTCDDSFPALLPDIPVGDLQPGEKLEKPIYIRCGTVGARMFLVYVSYLINTTVEGKEILCKCHRDETVTIETVFPFDVAIKFVSTKLEHLDRVFADIPFLLMTDILSASPWPLTIVTSQLQLSASMTSVDQLESYVENVVLQTGESASECFCLRCPPVTNSGGVATGCYIISWKRSSPVESVPVVSTVITLPHVIVESIPLHVKADLPSFGRVRESLPVRYHLQNKTNLVQDVEVSMEPSDAFMFSGLKQIRLRILPGTQQEVLYNFYPLMAGYQQLPSLHINLLRFPNFTNQLLRRFIPTHIFVKPQGRQADENSIAAA", "length": 1132 }, "evidence": [ { "id": "F4JXM9", "url": "https://omabrowser.org/oma/group/F4JXM9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q7Z392-1", "protein_name": "Trafficking protein particle complex subunit 11", "gene_name": "TRAPPC11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDHEYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELSFEHDAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQERKQLAKTLCNHEASVMYPNPDPLETQTGVLDFYGQRSWRQGILSFDLSDPEKEKVGILAIQLKERNVVHSEIIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVMCDYRSEGWWTLLTSVLTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLINVLMNESPDPEPDCDILAVKTAQKLWADRISLAGSNIFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDIYLKADCPHPIRFSKLCVSFNNQEYNQFCVIEEASKANEVLENLTQGKMCLVPGKTRKLLFKFVAKTEDVGKKIEITSVDLALGNETGRCVVLNWQGGGGDAASSQEALQAARSFKRRPKLPDNEVHWDSIIIQASTMIISRVPNISVHLLHEPPALTNEMYCLVVTVQSHEKTQIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCDESYPALLTDIPVGDLHPGEQLEKMLYVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFEHLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTVDQLESQVDNVILQTGESASECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIPLHVNADLPSFGRVRESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNINLLRFPNFTNQLLRRFIPTSIFVKPQGRLMDDTSIAAA", "length": 1133 }, "evidence": [ { "id": "F4JXM9", "url": "https://omabrowser.org/oma/group/F4JXM9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JXM9", "url": "https://www.uniprot.org/uniprotkb/F4JXM9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F4JXM9", "url": "https://www.uniprot.org/uniprotkb/F4JXM9" } ], "pmid": "" }, { "name": "plastid", "id": "GO:0009536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009536", "evidence": [ { "database": "UniProtKB", "id": "F4JXM9", "url": "https://www.uniprot.org/uniprotkb/F4JXM9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "Golgi to endosome transport", "id": "GO:0006895", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006895", "evidence": [ { "database": "UniProtKB", "id": "F4JXM9", "url": "https://www.uniprot.org/uniprotkb/F4JXM9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1052, "end_pos": 1054, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1098, "end_pos": 1100, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 656, "end_pos": 658, "annotation": "n_glycosylation_sequon" }, { "start_pos": 851, "end_pos": 853, "annotation": "n_glycosylation_sequon" }, { "start_pos": 975, "end_pos": 977, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JXM9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1190, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JXM9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JXM9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JXM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JXM9" }, { "id": "PF28382", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28382" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF8387", "eco_id": "ECO_0000259", "start_pos": 773, "end_pos": 927, "start_aa": "Pro", "end_aa": "Met", "glycosite_overlap": [] }, { "evidence": [ { "id": "F4JXM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JXM9" }, { "id": "PF11817", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11817" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Trafficking protein particle complex subunit 11", "eco_id": "ECO_0000259", "start_pos": 270, "end_pos": 539, "start_aa": "Arg", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 63, 64, 65, 71, 543, 544, 752, 825, 1034, 1041 ], "sequon_annotation_sites": [ { "start_pos": 1052, "end_pos": 1054 }, { "start_pos": 1098, "end_pos": 1100 }, { "start_pos": 176, "end_pos": 178 }, { "start_pos": 656, "end_pos": 658 }, { "start_pos": 851, "end_pos": 853 }, { "start_pos": 975, "end_pos": 977 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"https://www.uniprot.org/uniprotkb/F4JY42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JY42-1", "url": "https://www.uniprot.org/uniprotkb/F4JY42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMDDTVNELLRRKKAVLNHQIKSDLVASTLANHQEKPQAFSLLQQKDVQTKSPGTHFSNCAVKVGEKRKRNECGGICNTENRSMTEDVVNLSKDRNVDSKRSAFSDNGDATQEFGSGKQLPEVDCSKDPMSNAQVGAVVGNSRNLEVDQNSGLCDSESGGVVPQKISGFAGLKFNDFDKLREEVNFEVGQTWAIFDPVDGMPRLYAKIIKVSAPCFGLRITYLEPDPDGEKELQWFEEDLPVSVGNFRLGENKCTQDRSIFSHVIHCNELSNTLCFSVTCRFINTCHFSVSPREGETWALFKNWDIKWSSEPDSHRKYEYEFVEILSDYADEAGVYVAYLHKAKGFASVFLRMGTGYEGIFRILPRSLYRFSHRVPSFKLTGVKGKDMPKDAYELDQAALPETIEEIIVPSNSESNIKSKRQAIYIASKG", "length": 430, "header": "tr|F4JY42-1|F4JY42_ARATH Isoform 1 of DUF3444 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JY42-1" }, "isoforms": [ { "isoform_ac": "F4JY42-1", "url": "https://www.uniprot.org/uniprotkb/F4JY42/entry", "sequence": { "sequence": "MMDDTVNELLRRKKAVLNHQIKSDLVASTLANHQEKPQAFSLLQQKDVQTKSPGTHFSNCAVKVGEKRKRNECGGICNTENRSMTEDVVNLSKDRNVDSKRSAFSDNGDATQEFGSGKQLPEVDCSKDPMSNAQVGAVVGNSRNLEVDQNSGLCDSESGGVVPQKISGFAGLKFNDFDKLREEVNFEVGQTWAIFDPVDGMPRLYAKIIKVSAPCFGLRITYLEPDPDGEKELQWFEEDLPVSVGNFRLGENKCTQDRSIFSHVIHCNELSNTLCFSVTCRFINTCHFSVSPREGETWALFKNWDIKWSSEPDSHRKYEYEFVEILSDYADEAGVYVAYLHKAKGFASVFLRMGTGYEGIFRILPRSLYRFSHRVPSFKLTGVKGKDMPKDAYELDQAALPETIEEIIVPSNSESNIKSKRQAIYIASKG", "length": 430, "header": "tr|F4JY42-1|F4JY42_ARATH Isoform 1 of DUF3444 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JY42-1" }, "locus": { "chromosome": "5", "start_pos": 6249727, "end_pos": 6252250, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G18740.1", "url": "https://www.ensemblgenomes.org/id/AT5G18740.1" }, { "database": "Ensembl Peptide", "id": "AT5G18740.1", "url": "https://www.ensemblgenomes.org/id/AT5G18740.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JY42", "url": "https://www.uniprot.org/uniprotkb/F4JY42" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JY42", "url": "https://www.uniprot.org/uniprotkb/F4JY42" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G18740", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G18740", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JY42", "url": "https://www.uniprot.org/uniprotkb/F4JY42" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JY42-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 430, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JY42-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JY42" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JY42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JY42" }, { "id": "PF11926", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11926" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF3444", "eco_id": "ECO_0000259", "start_pos": 172, "end_pos": 382, "start_aa": "Leu", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], 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{ "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JY59-1", "uniprot_ac": "F4JY59", "uniprot_id": "F4JY59_ARATH", "mass": { "chemical_mass": 36568.0, "monoisotopic_mass": 36568.0 }, "refseq": {}, "gene_names": [ { "name": "T14C9.100", "type": "synonym", "evidence": [ { "id": "F4JY59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JY59" } ] }, { "name": "T14C9_100", "type": "synonym", "evidence": [ { "id": "F4JY59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JY59" } ] } ], "protein_names": [ { "name": "CHY-type/CTCHY-type/RING-type Zinc finger protein", "type": "synonym", "evidence": [ { "id": "F4JY59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JY59/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JY59", "url": "https://www.uniprot.org/uniprotkb/F4JY59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JY59", "locus": {} } ], "crossref": [ { "id": "F4JY59", "url": "https://alphafold.ebi.ac.uk/entry/F4JY59", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G25560", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G25560", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd16464", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16464", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "832631", "url": "https://www.ncbi.nlm.nih.gov/gene/832631", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008913", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008913", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037274", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037274", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037275", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037275", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039512", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039512", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G25560", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G25560", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NACMSIT", "url": "https://omabrowser.org/oma/group/NACMSIT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21319", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21319", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21319:SF53", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21319:SF53", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05495", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05495", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13639", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13639", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14599", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14599", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G25560", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G25560", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JY59", "url": "https://www.uniprot.org/uniprotkb/F4JY59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JY59-1", "url": "https://www.uniprot.org/uniprotkb/F4JY59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JY60", "url": "https://www.uniprot.org/uniprotkb/F4JY60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JY60-1", "url": "https://www.uniprot.org/uniprotkb/F4JY60-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JY61", "url": "https://www.uniprot.org/uniprotkb/F4JY61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JY61-1", "url": "https://www.uniprot.org/uniprotkb/F4JY61-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDVYFNHFAQQLQMSDQEKGEMSRHSHPHSINEESESSTLERVAAESLTNKVLDRGLMEYGCPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQLTRPLSSSSQVICLLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDDTSKKQYHCDGCGICRIGGRENFFHCYKCGCCYSILLKNGHPCVEGAMHHDCPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG", "length": 318, "header": "tr|F4JY59-1|F4JY59_ARATH Isoform 1 of CHY-type/CTCHY-type/RING-type Zinc finger protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JY59-1" }, "isoforms": [ { "isoform_ac": "F4JY59-1", "url": "https://www.uniprot.org/uniprotkb/F4JY59/entry", "sequence": { "sequence": "MGDVYFNHFAQQLQMSDQEKGEMSRHSHPHSINEESESSTLERVAAESLTNKVLDRGLMEYGCPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQLTRPLSSSSQVICLLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDDTSKKQYHCDGCGICRIGGRENFFHCYKCGCCYSILLKNGHPCVEGAMHHDCPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG", "length": 318, "header": "tr|F4JY59-1|F4JY59_ARATH Isoform 1 of CHY-type/CTCHY-type/RING-type Zinc finger protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JY59-1" }, "locus": { "chromosome": "5", "start_pos": 8897871, "end_pos": 8901709, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G25560.3", "url": "https://www.ensemblgenomes.org/id/AT5G25560.3" }, { "database": "Ensembl Peptide", "id": "AT5G25560.3", "url": "https://www.ensemblgenomes.org/id/AT5G25560.3" } ] } }, { "isoform_ac": "F4JY60-1", "url": "https://www.uniprot.org/uniprotkb/F4JY60/entry", "sequence": { "sequence": "MGDVYFNHFAQQLQMSDQEKGEMSRHSHPHSINEESESSTLERVAAESLTNKVLDRGLMEYGCPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQVICLLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDDTSKKQYHCDGCGICRIGGRENFFHCYKCGCCYSILLKNGHPCVEGAMHHDCPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG", "length": 308, "header": "tr|F4JY60-1|F4JY60_ARATH Computationally mapped isoform of CHY-type/CTCHY-type/RING-type Zinc finger protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JY59-1" }, "locus": { "chromosome": "5", "start_pos": 8897797, "end_pos": 8901734, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G25560.2", "url": "https://www.ensemblgenomes.org/id/AT5G25560.2" }, { "database": "Ensembl Peptide", "id": "AT5G25560.2", "url": "https://www.ensemblgenomes.org/id/AT5G25560.2" } ] } }, { "isoform_ac": "F4JY61-1", "url": "https://www.uniprot.org/uniprotkb/F4JY61/entry", "sequence": { "sequence": "MGDVYFNHFAQQLQMSDQEKGEMSRHSHPHSINEESESSTLERVAAESLTNKVLDRGLMEYGRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQVICLLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDDTSKKQYHCDGCGICRIGGRENFFHCYKCGCCYSILLKNGHPCVEGAMHHDCPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG", "length": 303, "header": "tr|F4JY61-1|F4JY61_ARATH Computationally mapped isoform of CHY-type/CTCHY-type/RING-type Zinc finger protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JY59-1" }, "locus": { "chromosome": "5", "start_pos": 8897797, "end_pos": 8901734, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G25560.4", "url": "https://www.ensemblgenomes.org/id/AT5G25560.4" }, { "database": "Ensembl Peptide", "id": "AT5G25560.4", "url": "https://www.ensemblgenomes.org/id/AT5G25560.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the 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D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JY59", "url": "https://www.uniprot.org/uniprotkb/F4JY59" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JY59", "url": "https://www.uniprot.org/uniprotkb/F4JY59" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G25560", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G25560", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q54TR9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MQTTNTQTPPLPQSIDEIKSKSYHSSELDILGCKHYARNCKIKAACCGRIYVCRLCHADDPVNFKHEINRHATKEVLCMFCQTLQPVSKQCINNDCNKEFARYFCDVCKFYDDSPTKKIYHCDKCGICRVGSRDDYIHCDKCNGCLNKSGFNSHKCIENKFSNCPICMEDLFSSREPSTPFDCGHMIHSSCYNDFIKSGSFKCPICKKSIGKMHWKHTDNIIKRSKMPEMYSGSTVSILCNDCQEKCVDQPFHFIGTKCTSCGSYNTTITSKNIIIDETKDSSFTVVEDAEEDEEDEEEEDEEGERLGEDEEVVEGDNDEDDDEEVVEENNNNNNNNNNNNN", "length": 342 }, "evidence": [ { "id": "F4JY59", "url": "https://omabrowser.org/oma/group/F4JY59/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JY59", "url": "https://www.uniprot.org/uniprotkb/F4JY59" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JY59", "url": "https://www.uniprot.org/uniprotkb/F4JY59" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F4JY59", "url": "https://www.uniprot.org/uniprotkb/F4JY59" } ], "pmid": "" }, { "name": "ubiquitin 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"table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JY67-1", "uniprot_ac": "F4JY67", "uniprot_id": "F4JY67_ARATH", "mass": { "chemical_mass": 37491.0, "monoisotopic_mass": 37491.0 }, "refseq": {}, "gene_names": [ { "name": "T14C9.140", "type": "synonym", "evidence": [ { "id": "F4JY67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JY67" } ] }, { "name": "T14C9_140", "type": "synonym", "evidence": [ { "id": "F4JY67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JY67" } ] } ], "protein_names": [ { "name": "Nucleic-acid protein", "type": "synonym", "evidence": [ { "id": "F4JY67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JY67/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JY67", "url": "https://www.uniprot.org/uniprotkb/F4JY67" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JY67", "locus": {} } ], "crossref": [ { "id": "F4JY67", "url": "https://alphafold.ebi.ac.uk/entry/F4JY67", "database": "AlphaFoldDB", "categories": [] }, { "id": "832635", "url": "https://www.ncbi.nlm.nih.gov/gene/832635", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025558", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025558", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040256", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040256", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G25600", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G25600", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ISITDRM", "url": "https://omabrowser.org/oma/group/ISITDRM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31286", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31286", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31286:SF162", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31286:SF162", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14111", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14111", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G25600", "url": 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"prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 222, "start_aa": "Thr", "end_pos": 222, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr222", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, 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"tr|F4JYV0-1|F4JYV0_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JYV0-1" }, "locus": { "chromosome": "5", "start_pos": 21977461, "end_pos": 21978237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G54150.1", "url": "https://www.ensemblgenomes.org/id/AT5G54150.1" }, { "database": "Ensembl Peptide", "id": "AT5G54150.1", "url": "https://www.ensemblgenomes.org/id/AT5G54150.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang 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"https://www.ensemblgenomes.org/id/AT5G11870.2" } ] } }, { "isoform_ac": "Q9LYI6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LYI6/entry", "sequence": { "sequence": "MVWLTNQQIGRWKRKRILVVGSFLCWSIIMFITPKVPLDSFRHHIFADKRNFMGVPNTLNVMTNFPFLIVGVLGFVLCIGGSFFNISLNGEIWGWTLFYAGIASLAFGSAFYHLKPDDNRIVWDTLPILIAYSSLFSSFLVERAGEKVGLSCLILLLFISCLSVAYARVFNDLRLCMTFQLIPCLVIPVMAVLLPPKYTHSRFWLWATAAYTIAKIEGLADNKIYNANRYIISGHSLEHLCSAVATLLLTIMLLYRSIRFNR", "length": 262, "header": "tr|Q9LYI6-1|F4JZD5_ARATH Computationally mapped isoform of Alkaline phytoceramidase (APHC) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JZD5-1" }, "locus": { "chromosome": "5", "start_pos": 3825490, "end_pos": 3827565, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G11870.1", "url": "https://www.ensemblgenomes.org/id/AT5G11870.1" }, { "database": "Ensembl Peptide", "id": "AT5G11870.1", "url": "https://www.ensemblgenomes.org/id/AT5G11870.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LYI6", "url": "https://www.uniprot.org/uniprotkb/Q9LYI6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LYI6", "url": "https://www.uniprot.org/uniprotkb/Q9LYI6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G11870", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G11870", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JZD5", "url": "https://www.uniprot.org/uniprotkb/F4JZD5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JZD5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 270, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JZD5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JZD5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 85, "end_pos": 87 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JZM4-1", "uniprot_ac": "F4JZM4", "uniprot_id": "F4JZM4_ARATH", "mass": { "chemical_mass": 77096.0, "monoisotopic_mass": 77096.0 }, "refseq": { "ac": "NP_197414", "name": "GPI transamidase component family protein / Gaa1-like family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197414" }, "gene_names": [ { "name": "T24G5.30", "type": "synonym", "evidence": [ { "id": "NP_197414", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197414" }, { "id": "F4JZM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JZM4" } ] }, { "name": "T24G5_30", "type": "synonym", "evidence": [ { "id": "NP_197414", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197414" }, { "id": "F4JZM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JZM4" } ] } ], "protein_names": [ { "name": "GPI transamidase component family protein / Gaa1-like family protein", "type": "synonym", "evidence": [ { "id": "NP_197414", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197414" }, { "id": "F4JZM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JZM4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JZM4", "url": "https://www.uniprot.org/uniprotkb/F4JZM4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JZM4", "locus": {} } ], "crossref": [ { "id": "F4JZM4", "url": "https://alphafold.ebi.ac.uk/entry/F4JZM4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G19130", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G19130", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "832033", "url": "https://www.ncbi.nlm.nih.gov/gene/832033", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F4JZM4", "url": "https://www.ebi.ac.uk/intact/interactors/id:F4JZM4*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR007246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G19130", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G19130", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MAIALWM", "url": "https://omabrowser.org/oma/group/MAIALWM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13304", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13304", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13304:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13304:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04114", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04114", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_197414", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197414", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G19130", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G19130", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JZM3", "url": "https://www.uniprot.org/uniprotkb/F4JZM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JZM3-1", "url": "https://www.uniprot.org/uniprotkb/F4JZM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JZM4", "url": "https://www.uniprot.org/uniprotkb/F4JZM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JZM4-1", "url": "https://www.uniprot.org/uniprotkb/F4JZM4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVNRDNEEEVKTDDGSPKIKPRPIVRLGIFLIAHSPVFSVVFSAAGVLALLLLPLLAKNTYISENALMPGSARSMLSNRDVSDGSKLVKDIKNFRLNHEGQGVEVQKLIGKYMSDMGAEVSYQKFHPEGNQFHPLHFFSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYDFINGGDYEDLSLGIVSSLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQNTADNFRRAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINVVNYLAVHRQGFYVKVEKVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEGSATLASSLYSQALGIPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLRGARLLEGTIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYIDGCKSLTNSTHNPTENFKSWKWLDAAKQVFTLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCSPFSSRLHGTNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLVPTCLMAQPIKPALRSRRLKSLLGAFCSIVLLTIGFPVMFFAISKGLLGEGLVGLSLGGEFWTWLESLWAWKSATYLYIGMVHLPCWLLCLCILFHPS", "length": 699, "header": "tr|F4JZM4-1|F4JZM4_ARATH Isoform 1 of GPI transamidase component family protein / Gaa1-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JZM4-1" }, "isoforms": [ { "isoform_ac": "F4JZM3-1", "url": "https://www.uniprot.org/uniprotkb/F4JZM3/entry", "sequence": { "sequence": "MAAVNRDNEEEVKTDDGSPKIKPRPIVRLGIFLIAHSPVFSVVFSAAGVLALLLLPLLAKNTYISENALMPGSARSMLSNRDVSDGSKLVKDIKNFRLNHEGQVQKLIGKYMSDMGAEVSYQKFHPEGNQFHPLHFFSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYDFINGGDYEDLSLGIVSSLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQNTADNFRRAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINVVNYLAVHRQGFYVKVEKVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEGSATLASSLYSQALGIPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLRGARLLEGTIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYIDGCKSLTNSTHNPTENFKSWKWLDAAKQVFTLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCSPFSSRLHGTNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLVPTCLMAQPIKPALRSRRLKSLLGAFCSIVLLTIGFPVMFFAISKGLLGEGLVGLSLGGEFWTWLESLWAWKSATYLYIGMVHLPCWLLCLCILFHPS", "length": 696, "header": "tr|F4JZM3-1|F4JZM4_ARATH Computationally mapped isoform of GPI transamidase component family protein / Gaa1-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JZM4-1" }, "locus": { "chromosome": "5", "start_pos": 6415920, "end_pos": 6419021, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G19130.2", "url": "https://www.ensemblgenomes.org/id/AT5G19130.2" }, { "database": "Ensembl Peptide", "id": "AT5G19130.2", "url": "https://www.ensemblgenomes.org/id/AT5G19130.2" } ] } }, { "isoform_ac": "F4JZM4-1", "url": "https://www.uniprot.org/uniprotkb/F4JZM4/entry", "sequence": { "sequence": "MAAVNRDNEEEVKTDDGSPKIKPRPIVRLGIFLIAHSPVFSVVFSAAGVLALLLLPLLAKNTYISENALMPGSARSMLSNRDVSDGSKLVKDIKNFRLNHEGQGVEVQKLIGKYMSDMGAEVSYQKFHPEGNQFHPLHFFSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYDFINGGDYEDLSLGIVSSLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQNTADNFRRAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINVVNYLAVHRQGFYVKVEKVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEGSATLASSLYSQALGIPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLRGARLLEGTIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYIDGCKSLTNSTHNPTENFKSWKWLDAAKQVFTLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCSPFSSRLHGTNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLVPTCLMAQPIKPALRSRRLKSLLGAFCSIVLLTIGFPVMFFAISKGLLGEGLVGLSLGGEFWTWLESLWAWKSATYLYIGMVHLPCWLLCLCILFHPS", "length": 699, "header": "tr|F4JZM4-1|F4JZM4_ARATH Isoform 1 of GPI transamidase component family protein / Gaa1-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JZM4-1" }, "locus": { "chromosome": "5", "start_pos": 6415920, "end_pos": 6419112, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G19130.1", "url": "https://www.ensemblgenomes.org/id/AT5G19130.1" }, { "database": "Ensembl Peptide", "id": "AT5G19130.1", "url": "https://www.ensemblgenomes.org/id/AT5G19130.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JZM3", "url": "https://www.uniprot.org/uniprotkb/F4JZM3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JZM3", "url": "https://www.uniprot.org/uniprotkb/F4JZM3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G19130", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G19130", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M2BIU5-1", "protein_name": "GPI-anchor transamidase component GPAA1", "gene_name": "gpaa1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGLLSDPNRRKALTNLLTRLNTPICVVCYLAAIVWFMGLAFEPFTLRTYMSENAMGSTMVEERFSAGERALAAAKEFNAHKRKADGMPVEWLVKAMQARGLEVFTQSFFQKLPFPDENKERYMVRGTNVYGILRAPRAPRTEALVISAPCTPGGTNNQAVGILLGLAQYFRNQVYWAKDIIFLVNEHDLIGMQAWLEGYHHTNITGMEYSPLQGRAGSIQAALSLELSSDVITSLDLVLEGLNGQLPNLDLANLFYAFCQKLNVLCTIQGKLQRNDWDSAEGYTHAAQTMMLMVLKQASGRSWGDHGLFLRYHIEAASIRGINSFRHYKMDATTIGRLLEGMVRKLNNLLERLHQSYFFYLLPSLSRFVSIGYYMPAFGLLAVILLLRALDLWVHLGAPVLSEVDGVSEAEQPSSPGVLSVLTPVVISHLTGVALYILPVYLQDMAVEHFPVSETEAVVLTALAIYTAGLALPHNTQRLLSGEGTEQGWKVLKLTSLLYLAVLLGCTALINFSLGFILAVTLVPVTASITPHMLKSVSALAMVLLSPAFTIFYCVLIYQELMEAPVSLPEGLTIFLSVISQGILDHALYGSLVYPLLALFVYPCWLMFWNILFWK", "length": 615 }, "evidence": [ { "id": "F4JZM4", "url": "https://omabrowser.org/oma/group/F4JZM4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F7EVW7-1", "protein_name": "GPI-anchor transamidase component GPAA1", "gene_name": "Gpaa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { 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"https://www.ebi.ac.uk/QuickGO/term/GO:0042765", "evidence": [ { "database": "UniProtKB", "id": "F4JZM4", "url": "https://www.uniprot.org/uniprotkb/F4JZM4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JZM4", "url": "https://www.uniprot.org/uniprotkb/F4JZM4" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F4JZM4", "url": "https://www.uniprot.org/uniprotkb/F4JZM4" } ], "pmid": "" }, { "name": "plastid", "id": "GO:0009536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009536", "evidence": [ { "database": "UniProtKB", "id": "F4JZM4", "url": "https://www.uniprot.org/uniprotkb/F4JZM4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "attachment of GPI anchor to protein", "id": "GO:0016255", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016255", "evidence": [ { "database": "UniProtKB", "id": "F4JZM4", "url": "https://www.uniprot.org/uniprotkb/F4JZM4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 484, "end_pos": 486, "annotation": "n_glycosylation_sequon" }, { "start_pos": 533, "end_pos": 535, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JZM4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 699, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JZM4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JZM4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 151, "end_pos": 153 }, { "start_pos": 484, "end_pos": 486 }, { "start_pos": 533, "end_pos": 535 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4JZN1-1", "uniprot_ac": "F4JZN1", "uniprot_id": "F4JZN1_ARATH", "mass": { "chemical_mass": 44113.0, "monoisotopic_mass": 44113.0 }, "refseq": { "ac": "NP_197418", "name": "NEP-interacting protein, putative (DUF239)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197418" }, "gene_names": [ { "name": "T24G5.70", "type": "synonym", "evidence": [ { "id": "NP_197418", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197418" }, { "id": "F4JZN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JZN1" } ] }, { "name": "T24G5_70", "type": "synonym", "evidence": [ { "id": "NP_197418", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197418" }, { "id": "F4JZN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JZN1" } ] } ], "protein_names": [ { "name": "NEP-interacting protein, putative (DUF239)", "type": "synonym", "evidence": [ { "id": "NP_197418", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197418" }, { "id": "F4JZN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JZN1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JZN1", "url": "https://www.uniprot.org/uniprotkb/F4JZN1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JZN1", "locus": {} } ], "crossref": [ { "id": "F4JZN1", "url": "https://alphafold.ebi.ac.uk/entry/F4JZN1", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G19170", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G19170", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "832037", "url": "https://www.ncbi.nlm.nih.gov/gene/832037", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025521", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025521", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G19170", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G19170", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PQFDITI", "url": "https://omabrowser.org/oma/group/PQFDITI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31589", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31589", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31589:SF110", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31589:SF110", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03080", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03080", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14365", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14365", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_197418", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197418", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G19170", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G19170", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JZN1", "url": "https://www.uniprot.org/uniprotkb/F4JZN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JZN1-1", "url": "https://www.uniprot.org/uniprotkb/F4JZN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESLTMLLIMGHFIQLGVSVIPVSTIYSPDGDLIDCIYRTDQRAFDHPLLRNHIIQEYPTNMPQIEKSVQENWQIWHDTGEKCPAETIPMRRELNPVSHQKQHVHVPKEYEVANRATSGHKYAIAYMINRTNVYGTRATFNVWTPKVESAYDFSLAQIWLASGSYETADLNTVEAGWQVSRSRYNDSQARLFTYWTADGYNKTGCYGLDLPGFVQTSSTIAIGAAIGRTSTYGGTQFDMTLQIWKDLFSGHWWLALGPNLVPIGYWPAVIFTTLSDYATAVEWGGEVLYRNLSSVNTVAQMGSGEYADKGYGKAAYFCNLKVAENNHTLLPVQDFGVQADYPEYYTVKKSSNRNCGNHFYFGGPGPQRSEAVRGTTVFGFCFLFYLSVFCF", "length": 391, "header": "tr|F4JZN1-1|F4JZN1_ARATH Isoform 1 of NEP-interacting protein, putative (DUF239) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JZN1-1" }, "isoforms": [ { "isoform_ac": "F4JZN1-1", "url": "https://www.uniprot.org/uniprotkb/F4JZN1/entry", "sequence": { "sequence": 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"https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JZS4", "url": "https://www.uniprot.org/uniprotkb/F4JZS4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G26290", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G26290", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4JZS4", "url": 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"id": "F4K0B5", "url": "https://alphafold.ebi.ac.uk/entry/F4K0B5", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G54350", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G54350", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835523", "url": "https://www.ncbi.nlm.nih.gov/gene/835523", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G54350", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G54350", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_200246", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200246", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G54350", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G54350", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K0B5", "url": "https://www.uniprot.org/uniprotkb/F4K0B5", "database": "UniProtKB", "categories": [ 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"length": 261, "header": "tr|F4K0B5-1|F4K0B5_ARATH Isoform 1 of C2H2-type zinc finger protein OS=Arabidopsis thaliana OX=3702 GN=MDK4.17 PE=4 SV=1 CANONICAL=F4K0B5-1" }, "locus": { "chromosome": "5", "start_pos": 22070135, "end_pos": 22071347, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G54350.1", "url": "https://www.ensemblgenomes.org/id/AT5G54350.1" }, { "database": "Ensembl Peptide", "id": "AT5G54350.1", "url": "https://www.ensemblgenomes.org/id/AT5G54350.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, 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Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K0B5", "url": "https://www.uniprot.org/uniprotkb/F4K0B5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K0B5", "url": "https://www.uniprot.org/uniprotkb/F4K0B5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G54350", "name": "", "url": 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"id": "AT5G60720.1", "url": "https://www.ensemblgenomes.org/id/AT5G60720.1" }, { "database": "Ensembl Peptide", "id": "AT5G60720.1", "url": "https://www.ensemblgenomes.org/id/AT5G60720.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 289, "end_pos": 289, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K0G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K0G5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser289" }, { "start_pos": 291, "end_pos": 291, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K0G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K0G5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser291" }, { "start_pos": 376, "end_pos": 376, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K0G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K0G5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser376" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K0G5", "url": "https://www.uniprot.org/uniprotkb/F4K0G5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4K0G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K0G5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K0G5", "url": "https://www.uniprot.org/uniprotkb/F4K0G5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G60720", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G60720", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4K0G5", "url": "https://www.uniprot.org/uniprotkb/F4K0G5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 20, "end_pos": 22, "annotation": 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"comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K0K4-1", "uniprot_ac": "F4K0K4", "uniprot_id": "F4K0K4_ARATH", "mass": { "chemical_mass": 17260.0, "monoisotopic_mass": 17260.0 }, "refseq": {}, "gene_names": [ { "name": "K1F13.2", "type": "synonym", "evidence": [ { "id": "F4K0K4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K0K4" } ] }, { "name": "K1F13_2", "type": "synonym", "evidence": [ { "id": "F4K0K4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K0K4" } ] } ], "protein_names": [ { "name": "Metal ion-binding protein", "type": "synonym", "evidence": [ { "id": "F4K0K4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K0K4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K0K4", "url": "https://www.uniprot.org/uniprotkb/F4K0K4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4K0K4", "locus": {} } ], "crossref": [ { "id": "F4K0K4", "url": "https://alphafold.ebi.ac.uk/entry/F4K0K4", "database": "AlphaFoldDB", "categories": [] }, { "id": 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"MFSSNNRSTQLTCGFKVNTNSSEWYKSITRILKKVKGGDFLLDADEGRAYISGLGDPHKLLKLMGSVKGKAAEMTFVKTGGHHHHHQHHYPHEPNLHYNSDSYYGQPPSYNSYWPSDNCYSRQHPPYYSQSLAMQPYHHQYPYPGYSIYG", "length": 150, "header": "tr|F4K0K4-1|F4K0K4_ARATH Isoform 1 of Metal ion-binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K0K4-1" }, "isoforms": [ { "isoform_ac": "F4K0K4-1", "url": "https://www.uniprot.org/uniprotkb/F4K0K4/entry", "sequence": { "sequence": "MFSSNNRSTQLTCGFKVNTNSSEWYKSITRILKKVKGGDFLLDADEGRAYISGLGDPHKLLKLMGSVKGKAAEMTFVKTGGHHHHHQHHYPHEPNLHYNSDSYYGQPPSYNSYWPSDNCYSRQHPPYYSQSLAMQPYHHQYPYPGYSIYG", "length": 150, "header": "tr|F4K0K4-1|F4K0K4_ARATH Isoform 1 of Metal ion-binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K0K4-1" }, "locus": { "chromosome": "5", "start_pos": 26512200, "end_pos": 26512824, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G66370.1", "url": "https://www.ensemblgenomes.org/id/AT5G66370.1" }, { "database": "Ensembl 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"length": 1075, "header": "tr|F4K0X5-1|F4K0X5_ARATH Isoform 1 of Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K0X5-1" }, "isoforms": [ { "isoform_ac": "F4K0X5-1", "url": "https://www.uniprot.org/uniprotkb/F4K0X5/entry", "sequence": { "sequence": 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"Thr145", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01010" } ], "phosphorylation": [ { "start_pos": 142, "end_pos": 142, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K0X5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K0X5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser142" }, { "start_pos": 145, "end_pos": 145, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K0X5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K0X5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr145" }, { "start_pos": 147, "end_pos": 147, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K0X5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K0X5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser147" }, { "start_pos": 151, "end_pos": 151, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K0X5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K0X5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser151" }, { "start_pos": 160, "end_pos": 160, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K0X5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K0X5" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser160" }, { "start_pos": 184, "end_pos": 184, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K0X5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K0X5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser184" }, { "start_pos": 188, "end_pos": 188, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K0X5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K0X5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser188" }, { "start_pos": 732, "end_pos": 732, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K0X5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K0X5" }, { "database": "PubMed", "id": "25561503", "url": 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"start_pos": 1007, "end_pos": 1062, "start_aa": "Lys", "end_aa": "Asn", "glycosite_overlap": [] }, { "evidence": [ { "id": "F4K0X5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K0X5" }, { "id": "PS50178", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50178" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FYVE-type", "eco_id": "ECO_0000259", "start_pos": 656, "end_pos": 718, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 145 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 142, 145, 147, 151, 160, 184, 188, 732, 736, 788, 805, 813, 818, 820, 824, 832, 843, 844, 845, 849, 855, 947, 953, 956, 957 ], "sequon_annotation_sites": [ { "start_pos": 169, "end_pos": 171 }, { "start_pos": 358, "end_pos": 360 }, { "start_pos": 492, "end_pos": 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"reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4K0Y2", "locus": {} } ], "crossref": [ { "id": "F4K0Y2", "url": "https://alphafold.ebi.ac.uk/entry/F4K0Y2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G12400", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G12400", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd15489", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15489", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15532", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15532", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "831115", "url": "https://www.ncbi.nlm.nih.gov/gene/831115", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": 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"Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24294", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24294", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_568273", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568273", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G12400", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G12400", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K0Y2", "url": "https://www.uniprot.org/uniprotkb/F4K0Y2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K0Y2-1", "url": "https://www.uniprot.org/uniprotkb/F4K0Y2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELVGKVVRKEIQGIGFCSGTVRSRDSSGFFEIVYENGVTEISELDEVVALVMGDGKSQENSVPVKKKRVGRKPKKRSRVARVVEIKRESSGLNEVNVDLNDGVAENSGVSEENLRGNVDLNCGPVETLGRTWDSSVTDLNRTVSESETGFDLTTGLDWNSNENLGLVNVNIDYEENCSDKRKWDIDLNMDASCDLDNAAICDFSGQKREVGFDLNVEVDVENSKDEEYSQMNGNDIVQEINMQDGNGAQDNIETGEYKEVHVAEVSSAELLEEIQKQNIVSPQDLKNLNSNGVEKDPDLPHHDAKTVDETLSDRGNSGEYTSGRRKRRKASDNPKFMSEPQLRRSARRRLARSPVSSTVTACFVEEVSPSPSISSLTEEKTWIVDGKADNISALPPKPQLPPSSPILDLDGLPVLDVFTAYSCLRSFSTLLFLSPFELKDFVEALRCMSPSLLFDSIHVSVLQILRKHLKQLAAEGDLSASACLRSLDWDTLDVVTYPLFVVEYLLCSGSKDNPGLDLTRLNFFRNDYFRQPVNLKIEILSRLCDDMTDAEVVRAELNKRSFAAEFEMELDRKTNTEVRRRKRTMMELADDFSLNNEVIDTSFDRNSDDCCFCKMDGSLLCCDGCPAAYHSKCVGLASHLLPEGDWYCPECAFDRRAPGLKPDKQIRGAEFIEIDPHGRKYYSSCGYLLVIDTDGTGSLNYYHVTDVNLVLEQLKSCSSFYAGVVSAIRKHLDIPVRPVRTISGLNSQMSVCMDKSVKGMIPSIDGFGAPLPASEKQSTSGAKKKLNKATSNGWSHNHGPRTRRKISDSATALDILNMSSEGSAETVQNGSDVQRLHEPASSSMLDIMKEPNMNSQNLAKINTRKGTKPNVQTETGYRNQYIFAQMTRSVYEEMIRKSPIRTNDMRSDEEIASTQVRTILMKTTKFQWRNIQSLYLDAWKENCGWCHSCKNSSEDAGTEINCLFNMSLGALRGLSESEVANIQSFEKNSHLLAIICQILSLESRLQGLLVGPWLNPQHSSFWREHILKASNISSLKHLLVDLEANLHHRVLSLEWLSHVDAAVVMGSAIHILIASTRSWSKTAIGKRRGTLLDSGVNPTAKKNGGLTMCWWRGGQLSRRLFNWKVLPRALISKAARQGGSMNIPGIFYPENSESAKRSRRVAWEAAVESSTTSEQLGLQIRTLQSYIKWDDIENSHLLPTLDKESRKSARLFKKAIVRRKCTEEETVKYLLDFGKRRNIPDVVSKNGCMVEESSSGRKRFWLNESHVPLHLVKGFEEKKAVRKTSKPGGSFRHSEIGKLRKRSSEGKGFSYLFERAERSESSLCEQCKKVVPLSEAASCHICKGVFHKKHIRRGEKEGMYICVPCKSEVLSKEQPTVRKRGRPPGSFRKKIGVQTQKRKKVIAARKSPRLKKTKTSMAERIAIRLKNHKKVVASKPLRRSGRQLKHVIRLQDESKVPEGSKKRKLETKRGRGRPKKVKQEISIRKARTDRCLNYWLNGLLLSRKAGNERVHQFHRERYYVPLENSDSDHDQPKCHLCGSIESKSGSTFISCELCGEWYHGDAYGLNEKNSSMVIGFRCHLCRKQSSPTCPHMRSTTSPVAS", "length": 1602, "header": "tr|F4K0Y2-1|F4K0Y2_ARATH Isoform 1 of PHD-finger and DNA binding domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K0Y2-1" }, "isoforms": [ { "isoform_ac": "F4K0Y2-1", "url": "https://www.uniprot.org/uniprotkb/F4K0Y2/entry", "sequence": { "sequence": "MELVGKVVRKEIQGIGFCSGTVRSRDSSGFFEIVYENGVTEISELDEVVALVMGDGKSQENSVPVKKKRVGRKPKKRSRVARVVEIKRESSGLNEVNVDLNDGVAENSGVSEENLRGNVDLNCGPVETLGRTWDSSVTDLNRTVSESETGFDLTTGLDWNSNENLGLVNVNIDYEENCSDKRKWDIDLNMDASCDLDNAAICDFSGQKREVGFDLNVEVDVENSKDEEYSQMNGNDIVQEINMQDGNGAQDNIETGEYKEVHVAEVSSAELLEEIQKQNIVSPQDLKNLNSNGVEKDPDLPHHDAKTVDETLSDRGNSGEYTSGRRKRRKASDNPKFMSEPQLRRSARRRLARSPVSSTVTACFVEEVSPSPSISSLTEEKTWIVDGKADNISALPPKPQLPPSSPILDLDGLPVLDVFTAYSCLRSFSTLLFLSPFELKDFVEALRCMSPSLLFDSIHVSVLQILRKHLKQLAAEGDLSASACLRSLDWDTLDVVTYPLFVVEYLLCSGSKDNPGLDLTRLNFFRNDYFRQPVNLKIEILSRLCDDMTDAEVVRAELNKRSFAAEFEMELDRKTNTEVRRRKRTMMELADDFSLNNEVIDTSFDRNSDDCCFCKMDGSLLCCDGCPAAYHSKCVGLASHLLPEGDWYCPECAFDRRAPGLKPDKQIRGAEFIEIDPHGRKYYSSCGYLLVIDTDGTGSLNYYHVTDVNLVLEQLKSCSSFYAGVVSAIRKHLDIPVRPVRTISGLNSQMSVCMDKSVKGMIPSIDGFGAPLPASEKQSTSGAKKKLNKATSNGWSHNHGPRTRRKISDSATALDILNMSSEGSAETVQNGSDVQRLHEPASSSMLDIMKEPNMNSQNLAKINTRKGTKPNVQTETGYRNQYIFAQMTRSVYEEMIRKSPIRTNDMRSDEEIASTQVRTILMKTTKFQWRNIQSLYLDAWKENCGWCHSCKNSSEDAGTEINCLFNMSLGALRGLSESEVANIQSFEKNSHLLAIICQILSLESRLQGLLVGPWLNPQHSSFWREHILKASNISSLKHLLVDLEANLHHRVLSLEWLSHVDAAVVMGSAIHILIASTRSWSKTAIGKRRGTLLDSGVNPTAKKNGGLTMCWWRGGQLSRRLFNWKVLPRALISKAARQGGSMNIPGIFYPENSESAKRSRRVAWEAAVESSTTSEQLGLQIRTLQSYIKWDDIENSHLLPTLDKESRKSARLFKKAIVRRKCTEEETVKYLLDFGKRRNIPDVVSKNGCMVEESSSGRKRFWLNESHVPLHLVKGFEEKKAVRKTSKPGGSFRHSEIGKLRKRSSEGKGFSYLFERAERSESSLCEQCKKVVPLSEAASCHICKGVFHKKHIRRGEKEGMYICVPCKSEVLSKEQPTVRKRGRPPGSFRKKIGVQTQKRKKVIAARKSPRLKKTKTSMAERIAIRLKNHKKVVASKPLRRSGRQLKHVIRLQDESKVPEGSKKRKLETKRGRGRPKKVKQEISIRKARTDRCLNYWLNGLLLSRKAGNERVHQFHRERYYVPLENSDSDHDQPKCHLCGSIESKSGSTFISCELCGEWYHGDAYGLNEKNSSMVIGFRCHLCRKQSSPTCPHMRSTTSPVAS", "length": 1602, "header": "tr|F4K0Y2-1|F4K0Y2_ARATH Isoform 1 of PHD-finger and DNA binding domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K0Y2-1" }, "locus": { "chromosome": "5", "start_pos": 4013424, "end_pos": 4021591, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G12400.1", "url": "https://www.ensemblgenomes.org/id/AT5G12400.1" }, { "database": "Ensembl Peptide", "id": "AT5G12400.1", "url": "https://www.ensemblgenomes.org/id/AT5G12400.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 282, "end_pos": 282, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K0Y2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K0Y2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser282" }, { "start_pos": 313, "end_pos": 313, 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"database": "UniProtKB", "id": "F4K185", "url": "https://www.uniprot.org/uniprotkb/F4K185" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4K185", "locus": {} } ], "crossref": [ { "id": "F4K185", "url": "https://alphafold.ebi.ac.uk/entry/F4K185", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G26730", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G26730", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "832716", "url": "https://www.ncbi.nlm.nih.gov/gene/832716", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053339", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053339", "database": "InterPro", 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Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K1C7", "url": "https://www.uniprot.org/uniprotkb/F4K1C7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, 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"tr|F4K1J1-1|F4K1J1_ARATH Isoform 1 of Calcineurin-like metallo-phosphoesterase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MDH9.6 PE=1 SV=1 CANONICAL=F4K1J1-1" }, "isoforms": [ { "isoform_ac": "F4K1J1-1", "url": "https://www.uniprot.org/uniprotkb/F4K1J1/entry", "sequence": { "sequence": "MNQISFWCLSLLLTVVIAAEETPITRIAFGSCANQSAPQPIWDAINKFDPQLFIWLGDNIYGDIRRPLTVIGKERTFGPWRNSPRFVPSSEEEMKLRYAKAKANPGYSRIQRKAKVIGTWDDHDYGLNDAGKEFDRKVINQKLMLDFLNEPLDSPRRKQAGVYASYTYGPPNRKVKVIVLDTRYHRDPLRSDGSILGDTQWDWLENELSGPRSEITIIGSSVQVISNLSATTGPLFYMESWGRFPKERKRLFKLIADTKRDGVIFISGDVHFGEITRYDCSVGYPLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMRVINDNCKFKSCTYGIILNLIPFTFSSDKLWKDLLTSQDTLEIRDVNGDTVLGTNVSLSELQPGGSNSLKDTTTKGKSQRYCTLEIELPGTTRYRLAVLIYFTIAVLAMAILGLIIGAVLAITACVYKCKVD", "length": 453, "header": "tr|F4K1J1-1|F4K1J1_ARATH Isoform 1 of Calcineurin-like metallo-phosphoesterase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MDH9.6 PE=1 SV=1 CANONICAL=F4K1J1-1" }, "locus": { "chromosome": "5", "start_pos": 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"https://www.ensemblgenomes.org/id/AT5G54920.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 408, "start_aa": "Thr", "end_pos": 408, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr408", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, 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Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K1W7", "url": "https://www.uniprot.org/uniprotkb/F4K1W7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K1W7", "url": "https://www.uniprot.org/uniprotkb/F4K1W7" } ], "reference": [ { "type": "PubMed", 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Classification" ] }, { "id": "NP_001190238", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190238", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G06190", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G06190", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K2D3", "url": "https://www.uniprot.org/uniprotkb/F4K2D3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K2D3-1", "url": "https://www.uniprot.org/uniprotkb/F4K2D3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FFZ8", "url": "https://www.uniprot.org/uniprotkb/Q9FFZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FFZ8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FFZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGVVARIVEKFGKRDIWYRISLISIPVSSVLIVLGNMELARIREEKKLLKERFDQLRARGIIRDQVYSGESMSPPP", "length": 77, "header": "tr|F4K2D3-1|F4K2D3_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=MBL20.7 PE=4 SV=1 CANONICAL=F4K2D3-1" }, "isoforms": [ { "isoform_ac": "F4K2D3-1", "url": "https://www.uniprot.org/uniprotkb/F4K2D3/entry", "sequence": { "sequence": "MAGVVARIVEKFGKRDIWYRISLISIPVSSVLIVLGNMELARIREEKKLLKERFDQLRARGIIRDQVYSGESMSPPP", "length": 77, "header": "tr|F4K2D3-1|F4K2D3_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=MBL20.7 PE=4 SV=1 CANONICAL=F4K2D3-1" }, "locus": { "chromosome": "5", "start_pos": 1875789, "end_pos": 1876782, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06190.2", "url": "https://www.ensemblgenomes.org/id/AT5G06190.2" }, { "database": "Ensembl Peptide", "id": "AT5G06190.2", "url": "https://www.ensemblgenomes.org/id/AT5G06190.2" } ] } }, { "isoform_ac": "Q9FFZ8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FFZ8/entry", "sequence": { "sequence": "MAGVVARIVEKFGKRDIWYRISLISIPVSSVLIVLGNMELARIREEKKLLKERFDQLRARGIIRDQ", "length": 66, "header": "tr|Q9FFZ8-1|Q9FFZ8_ARATH Computationally mapped isoform of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=MBL20.7 PE=4 SV=1 CANONICAL=F4K2D3-1" }, "locus": { "chromosome": "5", "start_pos": 1876034, "end_pos": 1876690, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06190.1", "url": "https://www.ensemblgenomes.org/id/AT5G06190.1" }, { "database": "Ensembl Peptide", "id": "AT5G06190.1", "url": "https://www.ensemblgenomes.org/id/AT5G06190.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, 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Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K2D3", "url": "https://www.uniprot.org/uniprotkb/F4K2D3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K2D3", "url": "https://www.uniprot.org/uniprotkb/F4K2D3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G06190", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G06190", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4K2D3", "url": "https://www.uniprot.org/uniprotkb/F4K2D3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4K2D3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 77, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4K2D3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4K2D3" } ], "lectin_list": [], 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K2J2-1", "uniprot_ac": "F4K2J2", "uniprot_id": "F4K2J2_ARATH", "mass": { "chemical_mass": 75873.0, "monoisotopic_mass": 75873.0 }, "refseq": {}, "gene_names": [ { "name": "T22N19.10", "type": "synonym", "evidence": [ { "id": "F4K2J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K2J2" } ] }, { "name": "T22N19_10", "type": "synonym", "evidence": [ { "id": "F4K2J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K2J2" } ] } ], "protein_names": [ { "name": "Auxin-responsive GH3 family protein", "type": "synonym", "evidence": [ { "id": "F4K2J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K2J2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K2J2", "url": "https://www.uniprot.org/uniprotkb/F4K2J2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4K2J2", "locus": {} } ], "crossref": [ { "id": "F4K2J2", "url": "https://alphafold.ebi.ac.uk/entry/F4K2J2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G13360", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G13360", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "831177", "url": "https://www.ncbi.nlm.nih.gov/gene/831177", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G13360", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G13360", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR31901", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31901", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31901:SF78", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31901:SF78", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03321", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03321", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23571", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23571", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23572", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23572", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G13360", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G13360", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K2J2", "url": "https://www.uniprot.org/uniprotkb/F4K2J2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K2J2-1", "url": "https://www.uniprot.org/uniprotkb/F4K2J2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LYS0", "url": "https://www.uniprot.org/uniprotkb/Q9LYS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LYS0-1", "url": "https://www.uniprot.org/uniprotkb/Q9LYS0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFLSPRSAHQKVGLSMLIDPLPEKNTKSGNSSTILRHRTFRQTTHFVCFLLRQGKWPELIYFARTKQSLVSQKAAQAIMLPKFDPTDQKACLSLLEDVTTNVKQIQDSVLEAILSRNAHTEYLSGFLNGQADKKSFKKNVPVVTYEDIKPYIDRIANGEPSDLICDRPISVLLTSSGTSGGVPKLIPLTTEELEQRISFASLYRPLLYKYIEGIRERKSFMLYFVTRESETASGILVRTMITCVLKSVTPANSFIWDQSQISPHAITTCSDTTQSMYCQLLCGLLQRDNVGRLGAPFASSFLKIIKFLEDHWPEFCSNIRTGCLSDWITDPQCVSGIGKFLTAPNPELASLIEQECSQTSWEAIVKRLWPKAKCIEAIVTGTMAQYNPLLEFYSGGLPVISTFYGSSECFFGLNLNPLSKPNEVSYTIIPCMAYFEFLEVEKDYESGHDPAENPVVVDLVDVKIGHDYEPVVTTFAGLYRYRLGDVLRVTGFYNNAPQFHFVGRQKVVLSIDMDKTYDEDLLKAVTNASLLLEPHDLMLMDFTSRVDSSSYPGHYVLYWELGRKVKDAKLELDQNVLEECCFTIEESLDAVYRKGRKNDKNIGPLEIKVVKPGAFDKLMNFFLSRGSSVSQYKTPRSVTNEEALKILEANVVSEFLSQKTPSWELHELHSSR", "length": 672, "header": "tr|F4K2J2-1|F4K2J2_ARATH Isoform 1 of Auxin-responsive GH3 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K2J2-1" }, "isoforms": [ { "isoform_ac": "F4K2J2-1", "url": "https://www.uniprot.org/uniprotkb/F4K2J2/entry", "sequence": { "sequence": "MFLSPRSAHQKVGLSMLIDPLPEKNTKSGNSSTILRHRTFRQTTHFVCFLLRQGKWPELIYFARTKQSLVSQKAAQAIMLPKFDPTDQKACLSLLEDVTTNVKQIQDSVLEAILSRNAHTEYLSGFLNGQADKKSFKKNVPVVTYEDIKPYIDRIANGEPSDLICDRPISVLLTSSGTSGGVPKLIPLTTEELEQRISFASLYRPLLYKYIEGIRERKSFMLYFVTRESETASGILVRTMITCVLKSVTPANSFIWDQSQISPHAITTCSDTTQSMYCQLLCGLLQRDNVGRLGAPFASSFLKIIKFLEDHWPEFCSNIRTGCLSDWITDPQCVSGIGKFLTAPNPELASLIEQECSQTSWEAIVKRLWPKAKCIEAIVTGTMAQYNPLLEFYSGGLPVISTFYGSSECFFGLNLNPLSKPNEVSYTIIPCMAYFEFLEVEKDYESGHDPAENPVVVDLVDVKIGHDYEPVVTTFAGLYRYRLGDVLRVTGFYNNAPQFHFVGRQKVVLSIDMDKTYDEDLLKAVTNASLLLEPHDLMLMDFTSRVDSSSYPGHYVLYWELGRKVKDAKLELDQNVLEECCFTIEESLDAVYRKGRKNDKNIGPLEIKVVKPGAFDKLMNFFLSRGSSVSQYKTPRSVTNEEALKILEANVVSEFLSQKTPSWELHELHSSR", "length": 672, "header": "tr|F4K2J2-1|F4K2J2_ARATH Isoform 1 of Auxin-responsive GH3 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K2J2-1" }, "locus": { "chromosome": "5", "start_pos": 4283356, "end_pos": 4286342, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G13360.3", "url": "https://www.ensemblgenomes.org/id/AT5G13360.3" }, { "database": "Ensembl Peptide", "id": "AT5G13360.3", "url": "https://www.ensemblgenomes.org/id/AT5G13360.3" } ] } }, { "isoform_ac": "Q9LYS0-1", "url": "https://www.uniprot.org/uniprotkb/Q9LYS0/entry", "sequence": { "sequence": "MLPKFDPTDQKACLSLLEDVTTNVKQIQDSVLEAILSRNAHTEYLSGFLNGQADKKSFKKNVPVVTYEDIKPYIDRIANGEPSDLICDRPISVLLTSSGTSGGVPKLIPLTTEELEQRISFASLYRPLLYKYIEGIRERKSFMLYFVTRESETASGILVRTMITCVLKSVTPANSFIWDQSQISPHAITTCSDTTQSMYCQLLCGLLQRDNVGRLGAPFASSFLKIIKFLEDHWPEFCSNIRTGCLSDWITDPQCVSGIGKFLTAPNPELASLIEQECSQTSWEAIVKRLWPKAKCIEAIVTGTMAQYNPLLEFYSGGLPVISTFYGSSECFFGLNLNPLSKPNEVSYTIIPCMAYFEFLEVEKDYESGHDPAENPVVVDLVDVKIGHDYEPVVTTFAGLYRYRLGDVLRVTGFYNNAPQFHFVGRQKVVLSIDMDKTYDEDLLKAVTNASLLLEPHDLMLMDFTSRVDSSSYPGHYVLYWELGRKVKDAKLELDQNVLEECCFTIEESLDAVYRKGRKNDKNIGPLEIKVVKPGAFDKLMNFFLSRGSSVSQYKTPRSVTNEEALKILEANVVSEFLSQKTPSWELHELHSSR", "length": 594, "header": "tr|Q9LYS0-1|F4K2J2_ARATH Computationally mapped isoform of Auxin-responsive GH3 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K2J2-1" }, "locus": { "chromosome": "5", "start_pos": 4283690, "end_pos": 4286341, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G13360.2", "url": "https://www.ensemblgenomes.org/id/AT5G13360.2" }, { "database": "Ensembl Peptide", "id": "AT5G13360.2", "url": "https://www.ensemblgenomes.org/id/AT5G13360.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, 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Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LYS0", "url": "https://www.uniprot.org/uniprotkb/Q9LYS0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LYS0", "url": "https://www.uniprot.org/uniprotkb/Q9LYS0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G13360", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G13360", "resource": "KEGG Pathway" } ], "orthologs": [], 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"categories": [] }, { "id": "AT5G13380", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G13380", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "831179", "url": "https://www.ncbi.nlm.nih.gov/gene/831179", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G13380", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G13380", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GMYCQLL", "url": "https://omabrowser.org/oma/group/GMYCQLL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31901", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31901", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31901:SF54", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31901:SF54", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03321", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03321", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23571", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23571", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23572", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23572", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_196842", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196842", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G13380", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G13380", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K2J6", "url": "https://www.uniprot.org/uniprotkb/F4K2J6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K2J6-1", "url": "https://www.uniprot.org/uniprotkb/F4K2J6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTPFICTERERDGSDPIHCSQRKDNRKAAIMLPKFDPTNPLATMSVLEDVTTNVKKIQDSLLEAILSRNSQTEYLRGFLTGQLDKQSFKKNVPIVTYEDIKPHIDRIANGEPSDLICDRPISLLLATTGTSGGIPKLIPLTAEELEQRILFGFLYVPLVFKHIEGLTQGKSLMFYFVTRESETVSGLMVRFMITCVLKSVNPTNSFLWDRVQISPHAIAICEDTNQGMYCQLLCGLLQREHVARLGAPYASSFLKVIKFLEDHWPELCSNIRTGRLSDWITDAQCVSGIGNFLTAPDPDLANLIEQECSKTSWEAILSRIWPKAKCIEAVITGTMAQYIPLLEFYGGGLPLVSSWYGSSECFIGINLNPLSKPSDVSYTIIPSMGYFEFIEVVKDRQEAGHVPADPVVVDLVDVKIGHDYELLVTTFSGLYRYRLGDVLRVTGFHNNAPQFYFVGRQNVVLSIDLSKTYEEDLLKAVKNASLLLEPHDLMLMDFTSRVDLSSLPGHYVLYWELGNKFKNAKLDPKSNVLEECCLTVEESLDSIYREGRKNDKIIGPLEIKVVKPGAFDELMNFFLSRGSSVSQYKTPRSVTHEEALNILESNVVSEFLSRKTPSWELHELHSSR", "length": 624, "header": "tr|F4K2J6-1|F4K2J6_ARATH Isoform 1 of Auxin-responsive GH3 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K2J6-1" }, "isoforms": [ { "isoform_ac": "F4K2J6-1", "url": "https://www.uniprot.org/uniprotkb/F4K2J6/entry", "sequence": { "sequence": "MTPFICTERERDGSDPIHCSQRKDNRKAAIMLPKFDPTNPLATMSVLEDVTTNVKKIQDSLLEAILSRNSQTEYLRGFLTGQLDKQSFKKNVPIVTYEDIKPHIDRIANGEPSDLICDRPISLLLATTGTSGGIPKLIPLTAEELEQRILFGFLYVPLVFKHIEGLTQGKSLMFYFVTRESETVSGLMVRFMITCVLKSVNPTNSFLWDRVQISPHAIAICEDTNQGMYCQLLCGLLQREHVARLGAPYASSFLKVIKFLEDHWPELCSNIRTGRLSDWITDAQCVSGIGNFLTAPDPDLANLIEQECSKTSWEAILSRIWPKAKCIEAVITGTMAQYIPLLEFYGGGLPLVSSWYGSSECFIGINLNPLSKPSDVSYTIIPSMGYFEFIEVVKDRQEAGHVPADPVVVDLVDVKIGHDYELLVTTFSGLYRYRLGDVLRVTGFHNNAPQFYFVGRQNVVLSIDLSKTYEEDLLKAVKNASLLLEPHDLMLMDFTSRVDLSSLPGHYVLYWELGNKFKNAKLDPKSNVLEECCLTVEESLDSIYREGRKNDKIIGPLEIKVVKPGAFDELMNFFLSRGSSVSQYKTPRSVTHEEALNILESNVVSEFLSRKTPSWELHELHSSR", "length": 624, "header": "tr|F4K2J6-1|F4K2J6_ARATH Isoform 1 of Auxin-responsive GH3 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K2J6-1" }, "locus": { "chromosome": "5", "start_pos": 4289839, "end_pos": 4292441, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G13380.1", "url": 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"MLNSITLTRKPPLPFNSVGFSGNHSSSFGRRTITEGSSSKALSFGYKNVGSLKCGRSNWPGRSGTAFGHLVRVSAVPGGNSGGSGGLGGSGGGGGGSGGGGGDGSDGKGKKWSLLSWYQALLSNSPVLTKAVTAALLNLVGDLICQLTINKTSSLDKKRTLTFTFLGLGLVGPTLHFWYLYLSKVVTASGLSGAVIRLLLDQFVFAPIFVGVFLSAVVTLEGKPSNVIPKLQQEWTGAMIANWQLWIPFQFLNFRFVPQNYQVLASNVVALAWNVILSFKAHKEVVAK", "length": 288, "header": "tr|F4K2L8-1|F4K2L8_ARATH Isoform 1 of Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K2L8-1" }, "isoforms": [ { "isoform_ac": "F4K2L8-1", "url": "https://www.uniprot.org/uniprotkb/F4K2L8/entry", "sequence": { "sequence": "MLNSITLTRKPPLPFNSVGFSGNHSSSFGRRTITEGSSSKALSFGYKNVGSLKCGRSNWPGRSGTAFGHLVRVSAVPGGNSGGSGGLGGSGGGGGGSGGGGGDGSDGKGKKWSLLSWYQALLSNSPVLTKAVTAALLNLVGDLICQLTINKTSSLDKKRTLTFTFLGLGLVGPTLHFWYLYLSKVVTASGLSGAVIRLLLDQFVFAPIFVGVFLSAVVTLEGKPSNVIPKLQQEWTGAMIANWQLWIPFQFLNFRFVPQNYQVLASNVVALAWNVILSFKAHKEVVAK", "length": 288, "header": "tr|F4K2L8-1|F4K2L8_ARATH Isoform 1 of Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K2L8-1" }, "locus": { "chromosome": "5", "start_pos": 6677016, "end_pos": 6679384, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G19750.1", "url": "https://www.ensemblgenomes.org/id/AT5G19750.1" }, { "database": "Ensembl Peptide", "id": "AT5G19750.1", "url": "https://www.ensemblgenomes.org/id/AT5G19750.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy 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"MDWNKEEACRAKTLAEDKMKEGDFVGAQKLLLKAQSLFSGLESLPQMLAVCDVHNSAEKKINCLENWYGILQVMHFADDATIKKQVRKLALLLHPDKNQFPGAEAAFKLVWDASRFLADKDKRSQYDIRRRIYLRLATNQLNANSGLQCAATNSATDTFWTCCEHCGYRYKYLRKYVNILLNCNICQRSYMAYDTGFNEAPSKSNTGQKEVQNQGPCNTSLNTNGESIGAQPGSVAAEVDKKGTFNKKFNKRNGGGESKKTEVKNSKIETEFVRNDDEEKMKSAAKLHKPHPEVTEPEIGASKSVPDESVSRSDEAPSTSKDKNKMKKGVEESINVDGSDFIKDKAYSKDNNKRKSPRRSQQSSYAEEEKISDNSLGPPKKRLRSNVGLKSEQTTRKGLVGVGSSKRFDSGGGSSAPSCAFKRKAKKFVDSGYQEISSVKDKEREVRKASGEGVVMEAKIDNNHNPNENLITEDLPDPEFSNFELTTSCFGVNQVWSMYDPIDGMPRLYARIDKVLVPEFKLWITWIDPLQDNKDNSIPIACGIFQGGGSEEENDHLKFSCQMFHLTRNNSVVIYPRKGEIWAIFRGWDISWSASSENHKHPYEYDFVEVLSNFNDENGLGVGFLGKVEGFVSLFRQDAQDGVLQLQIPPSQMLRFSHKVPSFKMTGKEREGVPPGCFELDPAALPKELFEVYDSKVDVGLDRELPNGKTGGPFPEASKVEMQANTTRESSPFKKKRPKVHDNHGSFSKESDGRRTNHERNSAKESRKSVKAVDALNLRKSPRLLSETNSQANSRSGRQIAEKKSANNGESCGKPGGLSLSGEKMSEKTITRMRKTPQDIHKPTVNVKKHGRNDESLSQSRGDGLLTQLNGNMKSSEPETRVPSSCKTVKENTFNFENQRSWDKFQIDQIWAIYSNDKGSPRKYAQIKKIDTSPEFKLHVAPLELYRPPIHMPRPVCCGRFKLKTGKAEVYVPSSFSHQVKAVKTKKNRFEVYPGKGEIWALYKNCNTRDYTETEELEIVEVVETDEQRIQAMTLTAKGFNNKPLYRRSEESNASFIDIPKTEVCRFSHQIPAFRHESRATRFGDGQYWELDLKAVLGLNLKNP", "length": 1104, "header": "tr|F4K2V2-1|F4K2V2_ARATH Isoform 1 of DNAJ heat shock N-terminal domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K2V2-1" }, "locus": { "chromosome": "5", "start_pos": 9597552, "end_pos": 9600866, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G27240.3", "url": "https://www.ensemblgenomes.org/id/AT5G27240.3" }, { "database": "Ensembl Peptide", "id": "AT5G27240.3", "url": "https://www.ensemblgenomes.org/id/AT5G27240.3" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 364, "end_pos": 364, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K2V2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K2V2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser364" }, { "start_pos": 365, "end_pos": 365, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K2V2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K2V2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Tyr365" }, { "start_pos": 748, "end_pos": 748, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K2V2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K2V2" } ], "site_lbl": "Ser748" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K2V2", "url": "https://www.uniprot.org/uniprotkb/F4K2V2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4K2V2", "url": 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"https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G36210", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "833618", "url": "https://www.ncbi.nlm.nih.gov/gene/833618", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001375", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001375", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050585", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050585", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G36210", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G36210", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GYTTLCA", "url": "https://omabrowser.org/oma/group/GYTTLCA/", "database": "OMA", "categories": [ "Protein 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"https://www.uniprot.org/uniprotkb/F4K2Y3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALLLLTSLNHLVSFSLTRLPSSSAHNLFLSRSFSSSIRRFNRFSLKPLRSFASMSSSSPDAAQTPLTTAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPNESGRGVLVLQGETSIDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYKQDITDKDSSPKPITPDYGTPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLSGETLEEPKVLVSGNDFYAFPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNIDKRVCVAGCDPKYVESPTEPKWSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEFAKPLWIFGTNSYEIIECSEEKNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSITLGNQCLYVEGASAVLPPSVARVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFPTEVPGQNAYAYFYPPTNPLYNASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAFVDVNYGGSTGYGREYRERLLRQWGIVDVDDCCGCAKYLVSSGKADVKRLCISGGSAGGYTTLASLAFRDVFKAGASLYGVADLKMLKEEGHKFESRYIDNLVGDEKDFYERSPINFVDKFSCPIILFQGLEDKVVTPDQSRKIYEALKKKGLPVALVEYEGEQHGFRKAENIKYTLEQQMVFFARVVGGFKVADDITPLKIDNFDT", "length": 730, "header": "tr|F4K2Y3-1|F4K2Y3_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MAB16.20 PE=1 SV=1 CANONICAL=F4K2Y3-1" }, "isoforms": [ { "isoform_ac": "F4K2Y3-1", "url": "https://www.uniprot.org/uniprotkb/F4K2Y3/entry", "sequence": { "sequence": "MALLLLTSLNHLVSFSLTRLPSSSAHNLFLSRSFSSSIRRFNRFSLKPLRSFASMSSSSPDAAQTPLTTAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPNESGRGVLVLQGETSIDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYKQDITDKDSSPKPITPDYGTPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLSGETLEEPKVLVSGNDFYAFPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNIDKRVCVAGCDPKYVESPTEPKWSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEFAKPLWIFGTNSYEIIECSEEKNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSITLGNQCLYVEGASAVLPPSVARVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFPTEVPGQNAYAYFYPPTNPLYNASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAFVDVNYGGSTGYGREYRERLLRQWGIVDVDDCCGCAKYLVSSGKADVKRLCISGGSAGGYTTLASLAFRDVFKAGASLYGVADLKMLKEEGHKFESRYIDNLVGDEKDFYERSPINFVDKFSCPIILFQGLEDKVVTPDQSRKIYEALKKKGLPVALVEYEGEQHGFRKAENIKYTLEQQMVFFARVVGGFKVADDITPLKIDNFDT", "length": 730, "header": "tr|F4K2Y3-1|F4K2Y3_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MAB16.20 PE=1 SV=1 CANONICAL=F4K2Y3-1" }, "locus": { "chromosome": "5", "start_pos": 14247479, "end_pos": 14253434, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G36210.1", "url": "https://www.ensemblgenomes.org/id/AT5G36210.1" }, { "database": "Ensembl Peptide", "id": "AT5G36210.1", "url": "https://www.ensemblgenomes.org/id/AT5G36210.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 185, "start_aa": "Thr", "end_pos": 185, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr185", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 204, "start_aa": "Thr", "end_pos": 204, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr204", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [ { "start_pos": 175, "end_pos": 175, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K2Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K2Y3" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser175" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K2Y3", "url": "https://www.uniprot.org/uniprotkb/F4K2Y3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "F4K2Y3", "url": "https://www.uniprot.org/uniprotkb/F4K2Y3" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4K2Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K2Y3" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K2Y3", "url": "https://www.uniprot.org/uniprotkb/F4K2Y3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G36210", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G36210", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q54IN4-1", "protein_name": "Peptidase S9 prolyl oligopeptidase catalytic domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDTSNDLNLISIDLVVNNKDSRYLESFKPSNNDFSLFFEIIPEEETRSTLIQIDNFGNRIDLIPKKFNIISSIIEYGGNSITIINEPKSNKDEEFLILFSECETQELYLFHPYKVNDEPKKLIFKNKNTTNSTNSNKLRFSSGSVNKENEKVIMVCEDHTNEKEVLHYLVEINLKTNEIEIIEKGHDFYAYPTLYNGKDKSSSSSSSSSSSSSSSSSLLAYIYWNFPNMPWDNSNVCIKDLKTNEIINISNGYEESVLNPIWNEFDDCLYFISDLNGYWTIHKYDLKSKKRSQVISSELIDFKEIGEPMWYFGRSYYGFITPSKLIAALADYGLVIFNIETNQVEQIIRNQFSHVKSIVASPSLSTALFIGGSSTVMFSPIKLNYNSDSKKCEFKQLLNVKGGESITDSMISKPIEIEFNTSSKSDNLIEKAFAYYYPPTFKKDSSTTTTPPPPLLVKSHGGPTDRAYSVLNYEYQYWTSRGFAILDVNYRGSSGFGKRYRKLLNGNWGLYDNADLVNAALHMVKMGLADKDKMFIDGGSAGGFATLCSLTFYDIFKGGCSYYGVADLETLFKETHKFESRYQDTLITEMKLDGPNGEWKRIYKDRSPINHLDLLKSPIALFHGLEDHVVPYNQSVLMYDHLKSKGIPSILELFPGEGHGFLSKDNIIKCLEYEYIFFCKLLNQLPIGIKYNNNNTILS", "length": 700 }, "evidence": [ { "id": "F4K2Y3", "url": "https://omabrowser.org/oma/group/F4K2Y3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { 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McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K329", "url": "https://www.uniprot.org/uniprotkb/F4K329" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K329", "url": "https://www.uniprot.org/uniprotkb/F4K329" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G42765", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G42765", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "chloroplast thylakoid membrane", "id": "GO:0009535", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009535", "evidence": [ { "database": "UniProtKB", "id": "F4K329", "url": "https://www.uniprot.org/uniprotkb/F4K329" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4K329", "url": "https://www.uniprot.org/uniprotkb/F4K329" } ], "pmid": "" }, { "name": "plastid", "id": "GO:0009536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009536", "evidence": [ { "database": "UniProtKB", "id": 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T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K355", "url": "https://www.uniprot.org/uniprotkb/F4K355" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", 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resistance protein (TIR-NBS class) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K383-1" }, "locus": { "chromosome": "5", "start_pos": 19777453, "end_pos": 19779815, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48780.1", "url": "https://www.ensemblgenomes.org/id/AT5G48780.1" }, { "database": "Ensembl Peptide", "id": "AT5G48780.1", "url": "https://www.ensemblgenomes.org/id/AT5G48780.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 413, "end_pos": 413, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K382", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K382" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "iPTMnet", "id": "F4K383", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K383" } ], "site_lbl": "Ser413" }, { "start_pos": 418, 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"MPNFSVNVPQLSSLYSTKTPKVRMNLCADQVFDKKLLWRDMSTKMKFPSFSAAELPDLRKSNKRRGSLRMIKCRAAGADGGRVAVGDDVFSVTTSSKYEVDYLGQSTKGDLNLKLDPLQSFGDGQATLEGPIEEVARTEAQAAENLIRELGIQGPFSAQHSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGKAYDYCMENLKSMGFPVDGLAFDPELVIRGLMIDKEKGNLVKADRFGYVKRAMHGTKMLSNKAVSEIYGRELVDLRNQSRWEFLNTFFSVSEALAYAQMVDRLDDGFISADLGTLDYKGLYKAVAKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMKHSFNKFLPNDMDWRDLFDMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKAETGGLYSGGSAQMIESSLNVHGDEILYVGDHIYTDVSVSKVHLRWRTALICRELEEEYMALIGSRGHREELIELINQKEVVGDLFNQLRLALQRRSKGRPAQTLAATNLDDQELTETMQKLLIVMQRLDDKIGLMLETDGELFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLNYTPFMYFRSQEQSLAHDSPLPDAGIEN", "length": 642, "header": "tr|F4K3A9-1|F4K3A9_ARATH Isoform 1 of HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K3A9-1" }, "locus": { "chromosome": "5", "start_pos": 19849437, "end_pos": 19853598, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48960.1", "url": "https://www.ensemblgenomes.org/id/AT5G48960.1" }, { "database": "Ensembl Peptide", "id": "AT5G48960.1", "url": "https://www.ensemblgenomes.org/id/AT5G48960.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 19, "end_pos": 19, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K3A9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K3A9" } ], "site_lbl": "Thr19" }, { "start_pos": 306, "end_pos": 306, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K3A9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K3A9" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser306" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K3A9", "url": "https://www.uniprot.org/uniprotkb/F4K3A9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "F4K3A9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K3A9" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K3A9", "url": "https://www.uniprot.org/uniprotkb/F4K3A9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G48960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G48960", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E7FC21-1", "protein_name": "Cytosolic 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"uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_001154790", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154790" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K3I2", "url": "https://www.uniprot.org/uniprotkb/F4K3I2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4K3I2", "locus": {} } ], "crossref": [ { "id": "F4K3I2", "url": "https://alphafold.ebi.ac.uk/entry/F4K3I2", "database": "AlphaFoldDB", "categories": [] }, { "id": "7922303", "url": "https://www.ncbi.nlm.nih.gov/gene/7922303", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G61495", "url": 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SV=1 CANONICAL=F4K3I2-1" }, "isoforms": [ { "isoform_ac": "F4K3I2-1", "url": "https://www.uniprot.org/uniprotkb/F4K3I2/entry", "sequence": { "sequence": "MILTALLSNNLLKKFAAEPESSSDLSAALYNNSRTTSLFITASQTALSEVNDITILCNIRHQCMSQSLSYLFLKPWISRLREKREPEQMGRSETHERRHRCRESIINFVKFRSFIRNKINLFIYSHPFKLFLVESITHLRGCG", "length": 143, "header": "tr|F4K3I2-1|F4K3I2_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K3I2-1" }, "locus": { "chromosome": "5", "start_pos": 24732768, "end_pos": 24733485, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G61495.1", "url": "https://www.ensemblgenomes.org/id/AT5G61495.1" }, { "database": "Ensembl Peptide", "id": "AT5G61495.1", "url": "https://www.ensemblgenomes.org/id/AT5G61495.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", 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K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K3I2", "url": "https://www.uniprot.org/uniprotkb/F4K3I2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K3I2", "url": "https://www.uniprot.org/uniprotkb/F4K3I2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G61495", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G61495", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4K3I2", "url": "https://www.uniprot.org/uniprotkb/F4K3I2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4K3I2-F1", "pdb_chain": "global", 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07714", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07714", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_200965", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200965", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G61570", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G61570", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K3J7", "url": "https://www.uniprot.org/uniprotkb/F4K3J7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K3J7-1", "url": "https://www.uniprot.org/uniprotkb/F4K3J7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRKSHLVKLILAVSLPTTFLIMIAIIIIFIFCRRTTTETNEVQYDVESPYEKQEFSDNGSETEEELIIFNGGEDLTICDILDAPGEVIGKSSYGTLYKATLQRSGKVRVLRFLRPLCAVNSDSKEFNGVIESLGFVRHDNLVPLLGFYVGNRGEKLMIHPFFGSSGNLSAFIKFLAGGDVDAHKWSNILSITIGIAKALDHLHTGMQKPIVHGNLKSKNVLLDKSFRPRVSDFGLHLLLNLAAGQEVLEASAAEGYKAPELIKMKEVSKESDVYSFGVIMLELVSGKEPTNKNPTGSVLDRNRLSDLYRPEIIRRCLKDGNGVTEECVLEYFQLAMSCCSPSPTLRPSFKQVLRKLEEIRK", "length": 361, "header": "tr|F4K3J7-1|F4K3J7_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K3J7-1" }, "isoforms": [ { "isoform_ac": "F4K3J7-1", "url": "https://www.uniprot.org/uniprotkb/F4K3J7/entry", "sequence": { "sequence": 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"database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4K3T5", "url": "https://www.orthodb.org/?gene=F4K3T5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16056", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16056", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16056:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16056:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25781", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25781", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001318491", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318491", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G06350", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G06350", "database": "TAIR", "categories": [ "Protein", 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"MVRSKAPAKKQQKKGIDFKKIKRKLGRKLPPPKNATNTEIKSKAIILPEQSVAAEKSGLATSKKGLTLKELLPQTSHHNAKVRKDALYGIKDLFKNHPEELQSHKYAIIQKLRERISDDDKLVRDVFYQLFDIDIFPLCKEDNQGLMVSLLMPYIFSAMAHSAIDVRLMAFKFFHLVVEFYPPTFSLDAEKILENYKDIIQKNHFYVEDKSKLKVALSGLSHCLSVLPCDESDTKSQKKGPSQNETLLTYEQDATKDCVRYAHVYQRLKEVVAVLINCFQDFIPLIHAPRGFDAHSFDCIQHILRSIGYAIKFSIRRHKQRQTAWRPASEEVTLMILDQDIASMLLKKLLGSFPLDPENNLYGKGDDKYFKLNSVLTEIFLEVSEWSHLPTDLSNRYLEFIENTLLGKITRSIRLRKDIHEKTLLALLPFLPKLILRVDRDWRDNLLEAFTITFSDCKPESKLKLACISTVRDMIIPNGDILYPNASDPTVHYYQVAWVNKLPSLLNQLGNEHPVSTQVVLQLLLDLGRVGCLNASPTCEDDIRNFFSLCQGEGDVPGGPFASLPREAQELALCFLYYFTTDKFSSPMMKAIVSCCLYPQLEPAVLYRIVEILHTAYRAGYIQITDHFSFLITLIARFKVVPEKLQSSIECNERETYCGTFKEVTKLVCSCLSEMGDSSLVLQIVEKVLLEQIVLKPALDNGCAILRMICVLDSTPTTLSERSVTTLSEFLPGYMINIVNCIPEDKENSYLYIQTCLYYLVPCYFLFNRSSKLTEQVLIRMRSMISENTKALESVQDRESGRNSLNMIQCIISVILLMHNDVKVRKIISSFKPEIDLILQNVITLQSSRSTSLTVEGKHMMKIAGERLRIASKSLLA", "length": 877, "header": "tr|F4K3T5-1|F4K3T5_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MHF15.13 PE=1 SV=1 CANONICAL=F4K3T5-1" }, "isoforms": [ { "isoform_ac": "F4K3T5-1", "url": "https://www.uniprot.org/uniprotkb/F4K3T5/entry", "sequence": { "sequence": "MVRSKAPAKKQQKKGIDFKKIKRKLGRKLPPPKNATNTEIKSKAIILPEQSVAAEKSGLATSKKGLTLKELLPQTSHHNAKVRKDALYGIKDLFKNHPEELQSHKYAIIQKLRERISDDDKLVRDVFYQLFDIDIFPLCKEDNQGLMVSLLMPYIFSAMAHSAIDVRLMAFKFFHLVVEFYPPTFSLDAEKILENYKDIIQKNHFYVEDKSKLKVALSGLSHCLSVLPCDESDTKSQKKGPSQNETLLTYEQDATKDCVRYAHVYQRLKEVVAVLINCFQDFIPLIHAPRGFDAHSFDCIQHILRSIGYAIKFSIRRHKQRQTAWRPASEEVTLMILDQDIASMLLKKLLGSFPLDPENNLYGKGDDKYFKLNSVLTEIFLEVSEWSHLPTDLSNRYLEFIENTLLGKITRSIRLRKDIHEKTLLALLPFLPKLILRVDRDWRDNLLEAFTITFSDCKPESKLKLACISTVRDMIIPNGDILYPNASDPTVHYYQVAWVNKLPSLLNQLGNEHPVSTQVVLQLLLDLGRVGCLNASPTCEDDIRNFFSLCQGEGDVPGGPFASLPREAQELALCFLYYFTTDKFSSPMMKAIVSCCLYPQLEPAVLYRIVEILHTAYRAGYIQITDHFSFLITLIARFKVVPEKLQSSIECNERETYCGTFKEVTKLVCSCLSEMGDSSLVLQIVEKVLLEQIVLKPALDNGCAILRMICVLDSTPTTLSERSVTTLSEFLPGYMINIVNCIPEDKENSYLYIQTCLYYLVPCYFLFNRSSKLTEQVLIRMRSMISENTKALESVQDRESGRNSLNMIQCIISVILLMHNDVKVRKIISSFKPEIDLILQNVITLQSSRSTSLTVEGKHMMKIAGERLRIASKSLLA", "length": 877, "header": "tr|F4K3T5-1|F4K3T5_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MHF15.13 PE=1 SV=1 CANONICAL=F4K3T5-1" }, "locus": { "chromosome": "5", "start_pos": 1938412, "end_pos": 1944366, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06350.1", "url": "https://www.ensemblgenomes.org/id/AT5G06350.1" }, { "database": "Ensembl Peptide", "id": "AT5G06350.1", "url": "https://www.ensemblgenomes.org/id/AT5G06350.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, 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"total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K3X4-1", "uniprot_ac": "F4K3X4", "uniprot_id": "F4K3X4_ARATH", "mass": { "chemical_mass": 49836.0, "monoisotopic_mass": 49836.0 }, "refseq": { "ac": "NP_196281", "name": "proline-rich extensin-like family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196281" }, "gene_names": [ { "name": "EXT9", "type": "recommended", "evidence": [ { "id": "F4K3X4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K3X4" } ] }, { "name": "F15M7.16", "type": "synonym", "evidence": [ { "id": "NP_196281", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196281" }, { "id": "F4K3X4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K3X4" } ] }, { "name": "F15M7_16", "type": "synonym", "evidence": [ { "id": "NP_196281", "database": "RefSeq", "url": 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"name": "EXT9", "url": "https://www.uniprot.org/uniprotkb/F4K3X4", "locus": {} } ], "crossref": [ { "id": "F4K3X4", "url": "https://alphafold.ebi.ac.uk/entry/F4K3X4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G06630", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G06630", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "830551", "url": "https://www.ncbi.nlm.nih.gov/gene/830551", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006706", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006706", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G06630", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G06630", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ANYPEHH", "url": "https://omabrowser.org/oma/group/ANYPEHH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR36586", "url": 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"categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSSRTMGLMNCMVYVVVLSAIAATVTSYPYSSPHTPAYDSPSYEHKGPKYAPHPKPYVYSSPPPPYYTPSPKVNYKSPPPPYVYNSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPLYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPNVYYKSPPPPYVYSSPPPPYYSPSPKVHYKSPPPPYVYSSPPPPYYSPSPKVHYKSPPPPYVYSSPPPPYYSPSPKVTYKSPPPPYVYKTPYY", "length": 440, "header": "tr|F4K3X4-1|F4K3X4_ARATH Isoform 1 of Proline-rich extensin-like family protein OS=Arabidopsis thaliana OX=3702 GN=EXT9 PE=4 SV=1 CANONICAL=F4K3X4-1" }, "isoforms": [ { "isoform_ac": "F4K3X4-1", "url": "https://www.uniprot.org/uniprotkb/F4K3X4/entry", "sequence": { "sequence": "MRSSRTMGLMNCMVYVVVLSAIAATVTSYPYSSPHTPAYDSPSYEHKGPKYAPHPKPYVYSSPPPPYYTPSPKVNYKSPPPPYVYNSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPLYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPNVYYKSPPPPYVYSSPPPPYYSPSPKVHYKSPPPPYVYSSPPPPYYSPSPKVHYKSPPPPYVYSSPPPPYYSPSPKVTYKSPPPPYVYKTPYY", "length": 440, "header": "tr|F4K3X4-1|F4K3X4_ARATH Isoform 1 of Proline-rich extensin-like family protein OS=Arabidopsis thaliana OX=3702 GN=EXT9 PE=4 SV=1 CANONICAL=F4K3X4-1" }, "locus": { "chromosome": "5", "start_pos": 2036312, "end_pos": 2037855, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06630.1", "url": "https://www.ensemblgenomes.org/id/AT5G06630.1" }, { "database": "Ensembl Peptide", "id": "AT5G06630.1", "url": "https://www.ensemblgenomes.org/id/AT5G06630.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 69, "start_aa": "Thr", "end_pos": 69, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr69", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K3X4", "url": "https://www.uniprot.org/uniprotkb/F4K3X4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K3X4", "url": "https://www.uniprot.org/uniprotkb/F4K3X4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G06630", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G06630", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of cell wall", "id": "GO:0005199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005199", "evidence": [ { "database": "UniProtKB", "id": "F4K3X4", "url": "https://www.uniprot.org/uniprotkb/F4K3X4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "plant-type cell wall organization", "id": "GO:0009664", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009664", "evidence": [ { "database": "UniProtKB", "id": "F4K3X4", "url": "https://www.uniprot.org/uniprotkb/F4K3X4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { 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"kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K465", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K465" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr320" }, { "start_pos": 357, "end_pos": 357, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K465", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K465" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser357" }, { "start_pos": 358, "end_pos": 358, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K465", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K465" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser358" }, { "start_pos": 366, "end_pos": 366, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K465", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K465" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser366" }, { "start_pos": 553, "end_pos": 553, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K465", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K465" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser553" }, { "start_pos": 729, "end_pos": 729, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", 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K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K465", "url": "https://www.uniprot.org/uniprotkb/F4K465" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4K465", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K465" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "F4K465", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K465" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4K465", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K465" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4K465", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K465" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { 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"journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K465", "url": "https://www.uniprot.org/uniprotkb/F4K465" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "F4K465", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=F4K465" }, { "database": "O-GlcNAc Atlas", 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"tr|F4K499-1|F4K499_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K499-1" }, "locus": { "chromosome": "5", "start_pos": 9635885, "end_pos": 9636884, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G27340.1", "url": "https://www.ensemblgenomes.org/id/AT5G27340.1" }, { "database": "Ensembl Peptide", "id": "AT5G27340.1", "url": "https://www.ensemblgenomes.org/id/AT5G27340.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang 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Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K499", "url": "https://www.uniprot.org/uniprotkb/F4K499" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K499", "url": "https://www.uniprot.org/uniprotkb/F4K499" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G27340", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G27340", "resource": "KEGG Pathway" } ], 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Classification" ] }, { "id": "PTHR31375", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31375", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00295", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00295", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_198105", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198105", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G27530", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G27530", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K4C2", "url": "https://www.uniprot.org/uniprotkb/F4K4C2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4C2-1", "url": "https://www.uniprot.org/uniprotkb/F4K4C2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDMVTIQKNGDIPAFVRVTTQWHGLMSFPETILRISILINFICFGLVNGQIYNVLKFGAEGDGQTDDSNAFLQAWNATCGGEENINTLFIPSGKTYLLQPIEFKGPCKSTSIKLQLDGIIVAPSNITSWSNPKSQTWISFSGVPGLMIDGSGTINGRGSSFWEALHICNCNNLTINGITSIDSPKSHISIKNCHYVAISKINILAPENSPNTDGIDISYSTNVNIFDSTIQTGDDCIAINTGSSSINITQVNCGPGHGISVGSLGADGENAAVSDVYVTQCTFNKTTNGARIKTWQGGQGYARNISFENITLINVQNPIIIDQQYTDKVLLDATKDSAVAISSVKYVGFQGTTLNEDAIMLKCSAITYCKDMVIDDIEVTMENGEKPKVECENVEGESSDNDLMRECFNSNSTFSGGSVGGFGWVYECPCVRMGGPNWRFSSRISRTFLDPSSFHVH", "length": 458, "header": "tr|F4K4C2-1|F4K4C2_ARATH Isoform 1 of Pectin lyase-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4K4C2-1" }, "isoforms": [ { "isoform_ac": "F4K4C2-1", "url": "https://www.uniprot.org/uniprotkb/F4K4C2/entry", "sequence": { "sequence": 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GN=MNL12.5 PE=4 SV=1 CANONICAL=F4K4M9-1" }, "locus": { "chromosome": "5", "start_pos": 17348876, "end_pos": 17352933, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G43230.1", "url": "https://www.ensemblgenomes.org/id/AT5G43230.1" }, { "database": "Ensembl Peptide", "id": "AT5G43230.1", "url": "https://www.ensemblgenomes.org/id/AT5G43230.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 426, "end_pos": 426, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K4M9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K4M9" } ], "site_lbl": "Thr426" }, { "start_pos": 433, "end_pos": 433, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K4M9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K4M9" } ], "site_lbl": "Ser433" }, { 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"date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K4M9", "url": "https://www.uniprot.org/uniprotkb/F4K4M9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": 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}, { "name": "hypothetical protein (DUF674)", "type": "synonym", "evidence": [ { "id": "NP_001119366", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001119366" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K4N0", "url": "https://www.uniprot.org/uniprotkb/F4K4N0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MNL12.6", "url": "https://www.uniprot.org/uniprotkb/F4K4N0", "locus": {} } ], "crossref": [ { "id": "AT5G43240", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G43240", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834342", "url": "https://www.ncbi.nlm.nih.gov/gene/834342", "database": "GeneID", "categories": [ "Genome 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"url": "https://www.uniprot.org/uniprotkb/F4K4N0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4N0-1", "url": "https://www.uniprot.org/uniprotkb/F4K4N0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSATLKNPVIKLKLLIDEEKNKVVFVEAGKDFVDLLFSFFTLPMGTIVRLLEMYKKSQKIAIGCFSNIYASVVSMGIEHFLTEACKQMLLYPGSLNHEKCRNLKLRVDDSEATKYFVCPKFVEREQCTESYSNFNTSRCSCGVLMNEVTQLDGRGGLASAGNGVEGGVFVRSDHTSFMITDDLKVEITSVRLTLNVLKDLGYVDCEKLDEKIHDVNLEEVPTLLECLSTSDNPLTDTFLKKKSSYSTKRIQKLPSPGLCEDREESTPDQTITLNVVKKEGNILFVECGDDFVDLLFTFLAIPLESAWGIAGDGIIIGCIGNLSKSFKDLSVDPGREAKCVLPHYYKCQKQLLDAVTTHKPPTFYLYVSSMASNHIREYRLSEDSSKPLVYFWDELMPMISIDPKSKGSTNTTDESTIPSGGFMKRGTKFMITDDLIITPLNSTSTIGLVKEKQIRLDDVEVQEIIIRKEEAIRLLQASLVTCSALSTGLLAIESASTSVPQSANLKKPKIET", "length": 512, "header": "tr|F4K4N0-1|F4K4N0_ARATH Isoform 1 of DUF674 family protein OS=Arabidopsis thaliana OX=3702 GN=MNL12.6 PE=4 SV=1 CANONICAL=F4K4N0-1" }, "isoforms": [ { "isoform_ac": "F4K4N0-1", "url": "https://www.uniprot.org/uniprotkb/F4K4N0/entry", "sequence": { "sequence": "MSATLKNPVIKLKLLIDEEKNKVVFVEAGKDFVDLLFSFFTLPMGTIVRLLEMYKKSQKIAIGCFSNIYASVVSMGIEHFLTEACKQMLLYPGSLNHEKCRNLKLRVDDSEATKYFVCPKFVEREQCTESYSNFNTSRCSCGVLMNEVTQLDGRGGLASAGNGVEGGVFVRSDHTSFMITDDLKVEITSVRLTLNVLKDLGYVDCEKLDEKIHDVNLEEVPTLLECLSTSDNPLTDTFLKKKSSYSTKRIQKLPSPGLCEDREESTPDQTITLNVVKKEGNILFVECGDDFVDLLFTFLAIPLESAWGIAGDGIIIGCIGNLSKSFKDLSVDPGREAKCVLPHYYKCQKQLLDAVTTHKPPTFYLYVSSMASNHIREYRLSEDSSKPLVYFWDELMPMISIDPKSKGSTNTTDESTIPSGGFMKRGTKFMITDDLIITPLNSTSTIGLVKEKQIRLDDVEVQEIIIRKEEAIRLLQASLVTCSALSTGLLAIESASTSVPQSANLKKPKIET", "length": 512, "header": "tr|F4K4N0-1|F4K4N0_ARATH Isoform 1 of DUF674 family protein OS=Arabidopsis thaliana OX=3702 GN=MNL12.6 PE=4 SV=1 CANONICAL=F4K4N0-1" }, "locus": { "chromosome": "5", "start_pos": 17352986, "end_pos": 17355122, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G43240.4", "url": "https://www.ensemblgenomes.org/id/AT5G43240.4" }, { "database": "Ensembl Peptide", "id": "AT5G43240.4", "url": "https://www.ensemblgenomes.org/id/AT5G43240.4" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 41, "end_pos": 41, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K4N0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K4N0" } ], "site_lbl": "Thr41" }, { "start_pos": 46, "end_pos": 46, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K4N0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K4N0" } ], "site_lbl": "Thr46" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K4N0", "url": "https://www.uniprot.org/uniprotkb/F4K4N0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K4N0", "url": "https://www.uniprot.org/uniprotkb/F4K4N0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4K4N0", "url": "https://www.uniprot.org/uniprotkb/F4K4N0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 321, "end_pos": 323, "annotation": "n_glycosylation_sequon" }, { "start_pos": 410, "end_pos": 412, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 41, 46 ], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 }, { "start_pos": 321, "end_pos": 323 }, { "start_pos": 410, "end_pos": 412 }, { "start_pos": 441, "end_pos": 443 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K4W1-1", "uniprot_ac": "F4K4W1", "uniprot_id": "F4K4W1_ARATH", "mass": { "chemical_mass": 91314.0, "monoisotopic_mass": 91314.0 }, "refseq": { "ac": "NP_200363", "name": "kinesin-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200363" }, "gene_names": [ { "name": "MTE17.24", "type": "recommended", "evidence": [ { "id": "F4K4W1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K4W1" } ] }, { "name": "MTE17.24", "type": "synonym", "evidence": [ { "id": "NP_200363", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200363" } ] }, { "name": "MTE17_24", "type": "synonym", "evidence": [ { "id": "NP_200363", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200363" }, { "id": "F4K4W1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K4W1" } ] } ], "protein_names": [ { "name": "Kinesin-like protein", "type": "synonym", "evidence": [ { "id": "F4K4W1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K4W1/entry#names_and_taxonomy" } ] }, { "name": "kinesin-like protein", "type": "synonym", "evidence": [ { "id": "NP_200363", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200363" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K4W1", "url": "https://www.uniprot.org/uniprotkb/F4K4W1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MTE17.24", "url": "https://www.uniprot.org/uniprotkb/F4K4W1", "locus": {} } ], "crossref": [ { "id": "F4K4W1", "url": "https://alphafold.ebi.ac.uk/entry/F4K4W1", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G55520", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G55520", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835646", "url": "https://www.ncbi.nlm.nih.gov/gene/835646", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G55520", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G55520", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GDYDVME", "url": "https://omabrowser.org/oma/group/GDYDVME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45615", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45615", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45615:SF80", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45615:SF80", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_200363", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200363", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G55520", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G55520", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K4W0", "url": "https://www.uniprot.org/uniprotkb/F4K4W0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4W0-1", "url": "https://www.uniprot.org/uniprotkb/F4K4W0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4W1", "url": "https://www.uniprot.org/uniprotkb/F4K4W1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4W1-1", "url": "https://www.uniprot.org/uniprotkb/F4K4W1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKTMKSPAKIGESRFLGNISTSSIRNLLPRSIYAKQKSIQNADTKKSFRSNDENSPPCDPNIQTNHHLNNDDDLHLKKKSPQKVFPSATQQILPKESTQFEAKSVLVTRANSMANEITEEDDSLGHQIRDLKEELIRTKSDGYKPDGSKNGYFVRESLSQLRNSINKSLVMSCENRQGSEKETMYEEEYDDDVVELSKHINKFHTNCDSDDLRDSIQSSFASASGCEADSMSGDEICSVDKHKDHKDCALADSGPSAVGNGISISLPHQSRILEEPPLSESPKIRNFRKSVAASTKFQASPRNVTESSSTGNRKPLSPTDSLAASLQRGLNIIDCHQRSSLSNRSSVSFSFGHLSLKPCDEADDNLSASVKLLQKDRPKEGGSSILLCLSCRQKLDQEAQGGYKAIEEACVDEKHLKNMCVEQATKIEQLTYQLDEYKKNALQESSKVTQQLMKSDDGEDETEVVKETYETNQRSEEFGKVRIDLSEKEALLKEIAELKSKLQPTKSTDNVRSSLLLRSFQMRKSIDFTKNTENNSEALEEERERWTEMESEWISLTDDLRMDIDSHRRHAEDLEIELKKEKMATEELNDALSRAMLGHSRFIEQYTELQEKYDELDERHSVTMAGIVDVKKAAAKAALKGRHGKRFAKAFSAELTAIRAEKEKEREFLKKENKGLKIQLRDTVEAVQAAGELLVRLREAEQAVQSSEERFGIMEEENDKLKQQMEKLKSKHKTEMSTMKQYLAESKLPGSALEAWFKENEQEEEEEHVSSSEHRTGVVSYDNYTDDQAWRSEFGAIYQDHDHHY", "length": 805, "header": "tr|F4K4W1-1|F4K4W1_ARATH Isoform 1 of Kinesin-like protein OS=Arabidopsis thaliana OX=3702 GN=MTE17.24 PE=1 SV=1 CANONICAL=F4K4W1-1" }, "isoforms": [ { "isoform_ac": "F4K4W0-1", "url": "https://www.uniprot.org/uniprotkb/F4K4W0/entry", "sequence": { "sequence": "MKTMKSPAKIGESRFLGNISTSSIRNLLPRSIYAKQKSIQNADTKKSFRSNDENSPPCDPNIQTNHHLNNDDDLHLKKKSPQKVFPSATQQILPKESTQFEAKSVLVTRANSMANEITEEDDSLGHQIRDLKEELIRTKSDGYKPDGSKNGYFVRESLSQLRNSINKSLVMSCENRQGSEKETMYEEEYDDDVVELSKHINKFHTNCDSDDLRDSIQSSFASASGCEADSMSGDEICSVDKHKDHKDCALADSGPSAVGNGISISLPHQSRILEEPPLSESPKIRNFRKSVAASTKFQASPRNVTESSSTGNRKPLSPTDSLAASLQRGLNIIDCHQRSSLSNRSSVSFSFGHLSLKPCDEADDNLSASVKLLQKDRPKEGGSSILLCLSCRQKLDQEAQGGYKAIEEACVDEKHLKNMCVEQATKIEQLTYQLDEYKKNALQESSKLMKSDDGEDETEVVKETYETNQRSEEFGKVRIDLSEKEALLKEIAELKSKLQPTKSTDNVRSSLLLRSFQMRKSIDFTKNTENNSEALEEERERWTEMESEWISLTDDLRMDIDSHRRHAEDLEIELKKEKMATEELNDALSRAMLGHSRFIEQYTELQEKYDELDERHSVTMAGIVDVKKAAAKAALKGRHGKRFAKAFSAELTAIRAEKEKEREFLKKENKGLKIQLRDTVEAVQAAGELLVRLREAEQAVQSSEERFGIMEEENDKLKQQMEKLKSKHKTEMSTMKQYLAESKLPGSALEAWFKENEQEEEEEHVSSSEHRTGVVSYDNYTDDQAWRSEFGAIYQDHDHHY", "length": 801, "header": "tr|F4K4W0-1|F4K4W1_ARATH Computationally mapped isoform of Kinesin-like protein OS=Arabidopsis thaliana OX=3702 GN=MTE17.24 PE=1 SV=1 CANONICAL=F4K4W1-1" }, "locus": { "chromosome": "5", "start_pos": 22488054, "end_pos": 22491300, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G55520.2", "url": "https://www.ensemblgenomes.org/id/AT5G55520.2" }, { "database": "Ensembl Peptide", "id": "AT5G55520.2", "url": "https://www.ensemblgenomes.org/id/AT5G55520.2" } ] } }, { "isoform_ac": "F4K4W1-1", "url": "https://www.uniprot.org/uniprotkb/F4K4W1/entry", "sequence": { "sequence": "MKTMKSPAKIGESRFLGNISTSSIRNLLPRSIYAKQKSIQNADTKKSFRSNDENSPPCDPNIQTNHHLNNDDDLHLKKKSPQKVFPSATQQILPKESTQFEAKSVLVTRANSMANEITEEDDSLGHQIRDLKEELIRTKSDGYKPDGSKNGYFVRESLSQLRNSINKSLVMSCENRQGSEKETMYEEEYDDDVVELSKHINKFHTNCDSDDLRDSIQSSFASASGCEADSMSGDEICSVDKHKDHKDCALADSGPSAVGNGISISLPHQSRILEEPPLSESPKIRNFRKSVAASTKFQASPRNVTESSSTGNRKPLSPTDSLAASLQRGLNIIDCHQRSSLSNRSSVSFSFGHLSLKPCDEADDNLSASVKLLQKDRPKEGGSSILLCLSCRQKLDQEAQGGYKAIEEACVDEKHLKNMCVEQATKIEQLTYQLDEYKKNALQESSKVTQQLMKSDDGEDETEVVKETYETNQRSEEFGKVRIDLSEKEALLKEIAELKSKLQPTKSTDNVRSSLLLRSFQMRKSIDFTKNTENNSEALEEERERWTEMESEWISLTDDLRMDIDSHRRHAEDLEIELKKEKMATEELNDALSRAMLGHSRFIEQYTELQEKYDELDERHSVTMAGIVDVKKAAAKAALKGRHGKRFAKAFSAELTAIRAEKEKEREFLKKENKGLKIQLRDTVEAVQAAGELLVRLREAEQAVQSSEERFGIMEEENDKLKQQMEKLKSKHKTEMSTMKQYLAESKLPGSALEAWFKENEQEEEEEHVSSSEHRTGVVSYDNYTDDQAWRSEFGAIYQDHDHHY", "length": 805, "header": "tr|F4K4W1-1|F4K4W1_ARATH Isoform 1 of Kinesin-like protein OS=Arabidopsis thaliana OX=3702 GN=MTE17.24 PE=1 SV=1 CANONICAL=F4K4W1-1" }, "locus": { "chromosome": "5", "start_pos": 22488074, "end_pos": 22491266, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G55520.1", "url": "https://www.ensemblgenomes.org/id/AT5G55520.1" }, { "database": "Ensembl Peptide", "id": "AT5G55520.1", "url": "https://www.ensemblgenomes.org/id/AT5G55520.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K4W0", "url": "https://www.uniprot.org/uniprotkb/F4K4W0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K4W0", "url": "https://www.uniprot.org/uniprotkb/F4K4W0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G55520", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G55520", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4K4W1", "url": "https://www.uniprot.org/uniprotkb/F4K4W1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 534, "end_pos": 536, "annotation": "n_glycosylation_sequon" }, { "start_pos": 783, "end_pos": 785, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4K4W1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 805, 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00443", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00443", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04780", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04780", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04781", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04781", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G61950", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G61950", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K529", "url": "https://www.uniprot.org/uniprotkb/F4K529", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K529-1", "url": "https://www.uniprot.org/uniprotkb/F4K529-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1132, "header": "tr|F4K529-1|F4K529_ARATH Isoform 1 of Ubiquitin carboxyl-terminal hydrolase-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K529-1" }, "isoforms": [ { "isoform_ac": "F4K529-1", "url": "https://www.uniprot.org/uniprotkb/F4K529/entry", "sequence": { "sequence": "MASSFKKDVMAERLYKDAEDLIAKGNHIKALEILEDLISIHWNANDAWLLHIEQGNVFVDLAEKAEDRDMEVAYLLGCVACFSQHVTVFELCAQSLFMLGRNLASVSHYKKCLKKAREALSDSNSKKLSSSTPVAFRAIVSRKKKDLEGFIEDAESMIAASKTSPLQKPEPKVRDPEKTPEPSKDDFQRFRSYWVGLDVKIKRDFLKVSIAKLTSFVGGIRKRKAQEALEQALASKKDRKWTFWMCRTKCSKRCSSVEECRKHFEQQHDADFKPSSEKDIVKRIGNNWARKISLGGWEPVDAVAAVEMIKNQLADVKAFASKSKNGWSYEWPLAVDEERKQLLQEIKLLLVSFCELKILSGSMRDWVMHFPVKYLAKLEVSKQGLIDSHLSETPQSICFLECHELTRILDFLKTIKCKRNDGTDQVCTAVDSVLGRIQVKVKIDFDPQFSFLLLDKRLLKINDVQFDDDEGTINVLDPSAHYAKAPVHGDDIISWLTDYNSVDKTFPRPIREHNLDIWLAVLKAVQFTCRTLGNKYAKKVQVVDYDAALTDVENMCVSENERRKNLPEDQWSRYASLLCDVCEERVPKNSLTTKLFVRAVRDVFEGALHPTLDFLDLEDCLNFIREHKSLSDDKVLQAIDLLKSVVTQKVLLMDTKILLIDNSRISLLNNLTRLSAFDNRTYILQLLKPFLLNEIVNMESKAKSDAAEADLLNELEKEKLQPKEKPQSKEKPQSKKRRDRTKKKPSTSISSLLDKTVEHKPESTSPSLRTVEEDSMEPEDALASETGRLEISSKTEIQEEATKDDPDMHSRHGEDPLSDHLESAAGEAAARYNSALDMTLKALLSIKIFKEDLMQNSQQIQDQRQEQVPTALQNLFTAVVSEAIQDEGVYSCLLSDFLTSQEEFLSMSSDAAKVVVAVLNLWRCWKNPERESLVTRLFTLVENKRMSCRKCRRITNSPVQSSYGIVMAADSIRELKCAFGNIKFVDILKLIRLGYKMLCDNKKGGCGKKSYVDHIIRRCPPIFTIVLEWEKSETEKEISETTKALDWEIDISRLYEEGLETNTNYRLVSMVGCGEGEEEHVCLAYEKNRWVNLRRECFAGEDVGDWKNVVRFCGERKVRPEILIYESVRLMA", "length": 1132, "header": "tr|F4K529-1|F4K529_ARATH Isoform 1 of Ubiquitin carboxyl-terminal hydrolase-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K529-1" }, "locus": { "chromosome": "5", "start_pos": 24873053, "end_pos": 24878309, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G61950.1", "url": "https://www.ensemblgenomes.org/id/AT5G61950.1" }, { "database": "Ensembl Peptide", "id": "AT5G61950.1", "url": "https://www.ensemblgenomes.org/id/AT5G61950.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 834, "end_pos": 834, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K529", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K529" } ], "site_lbl": "Ser834" }, { "start_pos": 839, "end_pos": 839, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { 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"database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G06810", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G06810", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K588", "url": "https://www.uniprot.org/uniprotkb/F4K588", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K588-1", "url": "https://www.uniprot.org/uniprotkb/F4K588-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLRQNPSRFTSVLKWVSQLSLETQLKPSISGTGFLLRCAQTPRSFATVTGNEVCSEKSKVKRTRNGFKITPNVRKLAEEAMLDYFYSTRGLQYMVAESMSKNSPIFIDNLLKKVDCVTASDINQSITRYLRFHPVNEFEPFLESSGLNPSEYNHLVPCDKVFLDEEGFLLENHHVLCYSGVDPKRIGKIFKEAREVFSYETGVLASKIKAYEDLGFSRLFLSKLIVCSPRVLMGHTNIELVQVVKTLQSLGFEFEWVMENLSDEGPDWSSVHRVLSLLREICFDEEKLYGLIRNCPSLLFENSGKWTGILVGFETKLGASRSELCSLFQKFPLIQVEKCVSNLRQCFLFLKEIEMEDDEIHKVFRSHSWWLGSCKLKKTSSLLVFLKAGKTRVCQVIQENPEEMKKWTMGSKIQPLPATNVDIESKSMKTQFLLDLGYKENSEEMETAMKNFRGKGSELRERFNVLVSLGFTKKDVKDMVKACPTMLSQTCDILESKVNYLIKELGYPLSTLVDFPSCLKFTLQRMKLRFAMFSWLQARGKVDRKIKVSTMLACSDKIFVSFFVNRHPDGSKHLEDLKKLHLSVETN", "length": 588, "header": "tr|F4K588-1|F4K588_ARATH Isoform 1 of Transcription termination factor family protein OS=Arabidopsis thaliana OX=3702 GN=MTERF19 PE=1 SV=1 CANONICAL=F4K588-1" }, "isoforms": [ { "isoform_ac": "F4K588-1", "url": "https://www.uniprot.org/uniprotkb/F4K588/entry", "sequence": { "sequence": "MKLRQNPSRFTSVLKWVSQLSLETQLKPSISGTGFLLRCAQTPRSFATVTGNEVCSEKSKVKRTRNGFKITPNVRKLAEEAMLDYFYSTRGLQYMVAESMSKNSPIFIDNLLKKVDCVTASDINQSITRYLRFHPVNEFEPFLESSGLNPSEYNHLVPCDKVFLDEEGFLLENHHVLCYSGVDPKRIGKIFKEAREVFSYETGVLASKIKAYEDLGFSRLFLSKLIVCSPRVLMGHTNIELVQVVKTLQSLGFEFEWVMENLSDEGPDWSSVHRVLSLLREICFDEEKLYGLIRNCPSLLFENSGKWTGILVGFETKLGASRSELCSLFQKFPLIQVEKCVSNLRQCFLFLKEIEMEDDEIHKVFRSHSWWLGSCKLKKTSSLLVFLKAGKTRVCQVIQENPEEMKKWTMGSKIQPLPATNVDIESKSMKTQFLLDLGYKENSEEMETAMKNFRGKGSELRERFNVLVSLGFTKKDVKDMVKACPTMLSQTCDILESKVNYLIKELGYPLSTLVDFPSCLKFTLQRMKLRFAMFSWLQARGKVDRKIKVSTMLACSDKIFVSFFVNRHPDGSKHLEDLKKLHLSVETN", "length": 588, "header": "tr|F4K588-1|F4K588_ARATH Isoform 1 of Transcription termination factor family protein OS=Arabidopsis thaliana OX=3702 GN=MTERF19 PE=1 SV=1 CANONICAL=F4K588-1" }, "locus": { "chromosome": "5", "start_pos": 2108493, "end_pos": 2110259, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06810.1", "url": "https://www.ensemblgenomes.org/id/AT5G06810.1" }, { "database": "Ensembl Peptide", "id": "AT5G06810.1", "url": "https://www.ensemblgenomes.org/id/AT5G06810.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K588", "url": "https://www.uniprot.org/uniprotkb/F4K588" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K588", "url": "https://www.uniprot.org/uniprotkb/F4K588" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G06810", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G06810", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4K588", "url": "https://www.uniprot.org/uniprotkb/F4K588" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4K588", "url": "https://www.uniprot.org/uniprotkb/F4K588" } ], "pmid": "" }, { "name": "plastid", "id": "GO:0009536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009536", "evidence": [ { "database": "UniProtKB", "id": "F4K588", "url": "https://www.uniprot.org/uniprotkb/F4K588" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "F4K588", "url": "https://www.uniprot.org/uniprotkb/F4K588" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription termination", "id": "GO:0006353", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006353", "evidence": [ { "database": "UniProtKB", "id": "F4K588", "url": "https://www.uniprot.org/uniprotkb/F4K588" } ], "pmid": "" }, { "name": "chloroplast organization", "id": "GO:0009658", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009658", "evidence": [ { "database": "UniProtKB", "id": "F4K588", "url": "https://www.uniprot.org/uniprotkb/F4K588" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4K588-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 588, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4K588-F1.pdb", "url_external": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K5E2-1", "uniprot_ac": "F4K5E2", "uniprot_id": "F4K5E2_ARATH", "mass": { "chemical_mass": 106681.0, "monoisotopic_mass": 106681.0 }, "refseq": { "ac": "NP_001190306", "name": "nuclear factor kappa-B-binding protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190306" }, "gene_names": [ { "name": "MAC12.8", "type": "recommended", "evidence": [ { "id": "F4K5E2", "database": 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"categories": [ "Genome Annotation" ] }, { "id": "IPR024867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G13950", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G13950", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MRNCEEI", "url": "https://omabrowser.org/oma/group/MRNCEEI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13052", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13052", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13052:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13052:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001190306", 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"database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser33" }, { "start_pos": 468, "end_pos": 468, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5E0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5E0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser468" }, { "start_pos": 476, "end_pos": 476, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5E0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5E0" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser476" }, { "start_pos": 525, "end_pos": 525, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": 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"id": "F4K5I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K5I0" } ] } ], "protein_names": [ { "name": "Ankyrin", "type": "synonym", "evidence": [ { "id": "F4K5I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K5I0/entry#names_and_taxonomy" } ] }, { "name": "ankyrin", "type": "synonym", "evidence": [ { "id": "NP_196927", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196927" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K5I0", "url": "https://www.uniprot.org/uniprotkb/F4K5I0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4K5I0", "locus": {} } ], "crossref": [ { "id": "F4K5I0", "url": "https://alphafold.ebi.ac.uk/entry/F4K5I0", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G14230", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G14230", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "831273", "url": "https://www.ncbi.nlm.nih.gov/gene/831273", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051165", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051165", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G14230", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G14230", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KEMRMVG", "url": "https://omabrowser.org/oma/group/KEMRMVG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4K5I0", "url": "https://www.orthodb.org/?gene=F4K5I0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9LYA6", "url": "https://www.orthodb.org/?gene=Q9LYA6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24123", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24123", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24123:SF139", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24123:SF139", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13606", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13606", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_196927", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196927", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G14230", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G14230", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K5I0", "url": "https://www.uniprot.org/uniprotkb/F4K5I0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5I0-1", "url": "https://www.uniprot.org/uniprotkb/F4K5I0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LYA6", "url": "https://www.uniprot.org/uniprotkb/Q9LYA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LYA6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LYA6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTVFSGRQVVPMDYEAEVSQRLLEAILDGDFKTASDCVSDPLVDVNFVGAVSLKTRRSEVVLRDESPSEVRVEYEEFKTDVTALFLAVNFGNAALVKELLNIGADVNQKLFRGFATTVAVREGHFDVFEILLKAGASQPACEEALVGASCHGRSRFVELLMGTDLIRPQVAVHALATACCRGFVDVVGTLLKCGVDANSTDRLLLQSSKPSLYTNVDCTALVAAIVNRQVSAVRVLLQAGVKTDIMVRLGAWSWDTNTGEEFRVGAGVAEPYPLTWCAVEYFETSGDILRLLLKLQSPNALHNGRTLLHHAVLCGNKAAVSVLLDCGADPEAPIKTSRGIELRPIHIAARDGSVEIIQQLVGFGCDINSKNDVGNTALLISIKHKHPECVKVLALDGADFGLVNKFGHSAVSIAESNKWSLGLERVILELIRFGVVPHSSNASVFSPLLYGAQAGDAEALKALVKAQDIYLDYQDEEGFSAAMLAAMNGHVEAFRVLVYAGADVKLYNNSGDTVVSLSEQNGNRDVIEKVMLEFALEKDSRNMAGGFYALHCAARRGDVKAVKLLSGKGYSLDIPDGDGYTPLMLAAREGHGHMCEYLISCGANCNAKNGRGEKLLDLATGDAEKVIRNELSRRFVIEGSSVMKHTKGGKGKKHGKGLRMLESSGVLSWGKSRKRTVVCKEVEIGMSQRFRKNRKGKGDGAEEEGIFRVVTTENKEVHFVCEGGLVCAEMWVRGIRLVTRETICGRTQTQN", "length": 751, "header": "tr|F4K5I0-1|F4K5I0_ARATH Isoform 1 of Ankyrin OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K5I0-1" }, "isoforms": [ { "isoform_ac": "F4K5I0-1", "url": "https://www.uniprot.org/uniprotkb/F4K5I0/entry", "sequence": { "sequence": "MTVFSGRQVVPMDYEAEVSQRLLEAILDGDFKTASDCVSDPLVDVNFVGAVSLKTRRSEVVLRDESPSEVRVEYEEFKTDVTALFLAVNFGNAALVKELLNIGADVNQKLFRGFATTVAVREGHFDVFEILLKAGASQPACEEALVGASCHGRSRFVELLMGTDLIRPQVAVHALATACCRGFVDVVGTLLKCGVDANSTDRLLLQSSKPSLYTNVDCTALVAAIVNRQVSAVRVLLQAGVKTDIMVRLGAWSWDTNTGEEFRVGAGVAEPYPLTWCAVEYFETSGDILRLLLKLQSPNALHNGRTLLHHAVLCGNKAAVSVLLDCGADPEAPIKTSRGIELRPIHIAARDGSVEIIQQLVGFGCDINSKNDVGNTALLISIKHKHPECVKVLALDGADFGLVNKFGHSAVSIAESNKWSLGLERVILELIRFGVVPHSSNASVFSPLLYGAQAGDAEALKALVKAQDIYLDYQDEEGFSAAMLAAMNGHVEAFRVLVYAGADVKLYNNSGDTVVSLSEQNGNRDVIEKVMLEFALEKDSRNMAGGFYALHCAARRGDVKAVKLLSGKGYSLDIPDGDGYTPLMLAAREGHGHMCEYLISCGANCNAKNGRGEKLLDLATGDAEKVIRNELSRRFVIEGSSVMKHTKGGKGKKHGKGLRMLESSGVLSWGKSRKRTVVCKEVEIGMSQRFRKNRKGKGDGAEEEGIFRVVTTENKEVHFVCEGGLVCAEMWVRGIRLVTRETICGRTQTQN", "length": 751, "header": "tr|F4K5I0-1|F4K5I0_ARATH Isoform 1 of Ankyrin OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K5I0-1" }, "locus": { "chromosome": "5", "start_pos": 4591690, "end_pos": 4595964, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G14230.1", "url": "https://www.ensemblgenomes.org/id/AT5G14230.1" }, { "database": "Ensembl Peptide", "id": "AT5G14230.1", "url": "https://www.ensemblgenomes.org/id/AT5G14230.1" } ] } }, { "isoform_ac": "Q9LYA6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LYA6/entry", "sequence": { "sequence": "MGTDLIRPQVAVHALATACCRGFVDVVGTLLKCGVDANSTDRLLLQSSKPSLYTNVDCTALVAAIVNRQVSAVRVLLQAGVKTDIMVRLGAWSWDTNTGEEFRVGAGVAEPYPLTWCAVEYFETSGDILRLLLKLQSPNALHNGRTLLHHAVLCGNKAAVSVLLDCGADPEAPIKTSRGIELRPIHIAARDGSVEIIQQLVGFGCDINSKNDVGNTALLISIKHKHPECVKVLALDGADFGLVNKFGHSAVSIAESNKWSLGLERVILELIRFGVVPHSSNASVFSPLLYGAQAGDAEALKALVKAQDIYLDYQDEEGFSAAMLAAMNGHVEAFRVLVYAGADVKLYNNSGDTVVSLSEQNGNRDVIEKVMLEFALEKDSRNMAGGFYALHCAARRGDVKAVKLLSGKGYSLDIPDGDGYTPLMLAAREGHGHMCEYLISCGANCNAKNGRGEKLLDLATGDAEKVIRNELSRRFVIEGSSVMKHTKGGKGKKHGKGLRMLESSGVLSWGKSRKRTVVCKEVEIGMSQRFRKNRKGKGDGAEEEGIFRVVTTENKEVHFVCEGGLVCAEMWVRGIRLVTRETICGRTQTQN", "length": 591, "header": "tr|Q9LYA6-1|F4K5I0_ARATH Computationally mapped isoform of Ankyrin OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K5I0-1" }, "locus": { "chromosome": "5", "start_pos": 4593198, "end_pos": 4595775, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G14230.2", "url": "https://www.ensemblgenomes.org/id/AT5G14230.2" }, { "database": "Ensembl Peptide", "id": "AT5G14230.2", "url": "https://www.ensemblgenomes.org/id/AT5G14230.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LYA6", "url": "https://www.uniprot.org/uniprotkb/Q9LYA6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LYA6", "url": "https://www.uniprot.org/uniprotkb/Q9LYA6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G14230", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G14230", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5TYM7-1", "protein_name": "CARD- and ANK-domain containing inflammasome adapter protein", "gene_name": "caiap", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGSTSFTNPYAIEVIQMKRSELVSGILNPEDLLDLLIANGVLQPDIRVLVSDLTVREEKNSRMLNILISRGERACRIFFYPCLKRAEPDLYQHMRTYVGGVNEGIRDARRQLIGYLLEKDKQGLVKNSKPERIHPKSTANEPNNEPLNKQILKSESNHHDAILEAISSGDLYLLQELTKELDVNSVLSSNDTLLHHAAEYGKEAIVYFLLRQGAKLDLKDKEGRTALHRAAQRGHTAVAVALAKAGADIHATDQTSKTPLHLAAQNGHEGCVKALVHEEKKSLKNQTTVLHMAAIEDNATLAEVLLRNGALVDAQDGQRKTALHHAVRHGNEKTAAVLLKAGAQVDSRIVDAAFQLNRKSLLSLFLQHVHESMSQTEINAALFKAVQRNLDAVVAALIEHGADVNSCNELGYTPVLLAAELGNGEAFKVLVSKKAKLDERLPNQMSSLHLAVQSGSIQIAQILLHKGIDPNISGPKDQTPLHLSASHNQPAMMALLLRVGAQLNPVTQDGFTPLHLASQNGHTEAVAQLLEAKADVHAKDKQGRTALHWAAEQGEVAIIQSLLAAGAYSNASEREKKTPLHLAAAEGHTKAVSALLAGKAKVGAKDMDGCSPLHYAARNGKERAGSVLLASSKSKNVDDKNVWRRTALHLAAEHGHEALVGILLENKAKINALDNNKDTPLHCACKTGHLGTVQRLINWTNGERANLQATNNVKKNALQVAEAGDTEAHENISTLLKKKMFLVK", "length": 744 }, "evidence": [ { "id": "F4K5I0", "url": "https://omabrowser.org/oma/group/F4K5I0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4K5I0", "url": "https://www.uniprot.org/uniprotkb/F4K5I0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 508, "end_pos": 510, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4K5I0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 751, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4K5I0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4K5I0" } ], 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"MSSSMSSAGSSTPKSKKLKGIVVDMEKSKEKATRNTILKLGSPQEVTSERRIENSSFGSSAVRRGREIMKFYPSKSNKIYTCHFCKKGFSTSQALGGHQNAHKQEREWDKKRKEMEAEYPGLSFLNPFLDKPHILLGGYSQDALSNENHLGITLDPFKRLIYPSFNAGMNMAVVPRVTPTRFFTGNTSTNGSTSRVPDPLPSYNNLYPSNSRNVLPFPPPQTTKLSSNFVSQGNVLSEENFISKIGTNNIVEIDDDDDDIQPEEEKTKSGRIDLSLSL", "length": 278, "header": "tr|F4K5Q7-1|F4K5Q7_ARATH Isoform 1 of C2H2 and C2HC zinc fingers superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K5Q7-1" }, "isoforms": [ { "isoform_ac": "F4K5Q7-1", "url": "https://www.uniprot.org/uniprotkb/F4K5Q7/entry", "sequence": { "sequence": "MSSSMSSAGSSTPKSKKLKGIVVDMEKSKEKATRNTILKLGSPQEVTSERRIENSSFGSSAVRRGREIMKFYPSKSNKIYTCHFCKKGFSTSQALGGHQNAHKQEREWDKKRKEMEAEYPGLSFLNPFLDKPHILLGGYSQDALSNENHLGITLDPFKRLIYPSFNAGMNMAVVPRVTPTRFFTGNTSTNGSTSRVPDPLPSYNNLYPSNSRNVLPFPPPQTTKLSSNFVSQGNVLSEENFISKIGTNNIVEIDDDDDDIQPEEEKTKSGRIDLSLSL", "length": 278, "header": "tr|F4K5Q7-1|F4K5Q7_ARATH Isoform 1 of C2H2 and C2HC zinc fingers superfamily protein OS=Arabidopsis 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M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K5Q7", "url": "https://www.uniprot.org/uniprotkb/F4K5Q7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference 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protein OS=Arabidopsis thaliana OX=3702 GN=MJG14.20 PE=1 SV=1 CANONICAL=F4K5W4-1" }, "locus": { "chromosome": "5", "start_pos": 14690436, "end_pos": 14692851, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G37140.1", "url": "https://www.ensemblgenomes.org/id/AT5G37140.1" }, { "database": "Ensembl Peptide", "id": "AT5G37140.1", "url": "https://www.ensemblgenomes.org/id/AT5G37140.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 279, "end_pos": 279, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5W4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5W4" } ], "site_lbl": "Thr279" }, { "start_pos": 284, "end_pos": 284, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5W4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5W4" 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"MDTKEIRKLLEKNEQTSLFARLCSWSLKDILNEDLSKEKIMTIPDRFSSVDEYSQCFVPHLLEETRTELFSSFRSLSKSPVSRILSVETKVIEYSGRSSIKWFHDIKLMDYADDKNEIYEPKCGDIIALSPLSLTEERPRIDDLDPLLLGYVFSVYGDSKISVHFSRSISQSEKHTFCTGVFLINITTNTRIWNALHKDAADSTLIQSVLQEDASATEQCFSCENDVDGSDSDRVVDIIRSAKLNSSQEAAILGFLKTRNCKHKESVKLIWGPPGTGKTKTVATLLSTLMQLKCKTVVCAPTNTTIVAVASRLLSLSKETIVCAPTNSAIAEVVSRFEFSTLFYGTSILERTTYGMGNIVLSGNRERMGITSNKVLLNVFFNDRVSKLGRLFLSTCGWKKRLESIIDFLENTETKYEQHVNELELERMTEDEKKKEEVEERTMQEVVNIPTFESL", "length": 455, "header": "tr|F4K5W6-1|F4K5W6_ARATH Isoform 1 of P-loop nucleoside triphosphate hydrolase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MJG14.23 PE=4 SV=2 CANONICAL=F4K5W6-1" }, "isoforms": [ { "isoform_ac": "F4K5W6-1", "url": "https://www.uniprot.org/uniprotkb/F4K5W6/entry", "sequence": { "sequence": "MDTKEIRKLLEKNEQTSLFARLCSWSLKDILNEDLSKEKIMTIPDRFSSVDEYSQCFVPHLLEETRTELFSSFRSLSKSPVSRILSVETKVIEYSGRSSIKWFHDIKLMDYADDKNEIYEPKCGDIIALSPLSLTEERPRIDDLDPLLLGYVFSVYGDSKISVHFSRSISQSEKHTFCTGVFLINITTNTRIWNALHKDAADSTLIQSVLQEDASATEQCFSCENDVDGSDSDRVVDIIRSAKLNSSQEAAILGFLKTRNCKHKESVKLIWGPPGTGKTKTVATLLSTLMQLKCKTVVCAPTNTTIVAVASRLLSLSKETIVCAPTNSAIAEVVSRFEFSTLFYGTSILERTTYGMGNIVLSGNRERMGITSNKVLLNVFFNDRVSKLGRLFLSTCGWKKRLESIIDFLENTETKYEQHVNELELERMTEDEKKKEEVEERTMQEVVNIPTFESL", "length": 455, "header": "tr|F4K5W6-1|F4K5W6_ARATH Isoform 1 of P-loop nucleoside triphosphate hydrolase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MJG14.23 PE=4 SV=2 CANONICAL=F4K5W6-1" }, "locus": { "chromosome": "5", "start_pos": 14705426, "end_pos": 14706981, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G37160.1", "url": "https://www.ensemblgenomes.org/id/AT5G37160.1" }, { "database": "Ensembl Peptide", "id": "AT5G37160.1", "url": "https://www.ensemblgenomes.org/id/AT5G37160.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 404, "end_pos": 404, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K5W6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K5W6" } ], "site_lbl": "Ser404" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K5W6", "url": "https://www.uniprot.org/uniprotkb/F4K5W6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K5W6", "url": "https://www.uniprot.org/uniprotkb/F4K5W6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G37160", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37160", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": 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"total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K5X1-1", "uniprot_ac": "F4K5X1", "uniprot_id": "F4K5X1_ARATH", "mass": { "chemical_mass": 78231.0, "monoisotopic_mass": 78231.0 }, "refseq": { "ac": "NP_198537", 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"https://www.uniprot.org/uniprotkb/F4K5X1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K5X1", "url": "https://www.uniprot.org/uniprotkb/F4K5X1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MSK20.1", "url": "https://www.uniprot.org/uniprotkb/F4K5X1", "locus": {} } ], "crossref": [ { "id": "F4K5X1", "url": "https://alphafold.ebi.ac.uk/entry/F4K5X1", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G37210", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G37210", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "833695", "url": "https://www.ncbi.nlm.nih.gov/gene/833695", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G37210", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37210", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF153", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF153", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_198537", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198537", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G37210", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G37210", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K5X1", "url": "https://www.uniprot.org/uniprotkb/F4K5X1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K5X1-1", "url": "https://www.uniprot.org/uniprotkb/F4K5X1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K613-1", "uniprot_ac": "F4K613", "uniprot_id": "F4K613_ARATH", "mass": { "chemical_mass": 20551.0, "monoisotopic_mass": 20551.0 }, "refseq": { "ac": "NP_199162", "name": "myb-like protein X", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199162" }, "gene_names": [ { "name": "MWF20.21", "type": "recommended", "evidence": [ { "id": "F4K613", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K613" } ] }, { "name": "MWF20.21", "type": "synonym", "evidence": [ { "id": "NP_199162", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199162" } ] }, { "name": "MWF20_21", "type": "synonym", "evidence": [ { "id": "NP_199162", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199162" }, { "id": "F4K613", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K613" } ] } ], "protein_names": [ { "name": "Myb-like protein X", "type": "synonym", "evidence": [ { "id": "F4K613", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K613/entry#names_and_taxonomy" } ] }, { "name": "myb-like protein X", "type": "synonym", "evidence": [ { "id": "NP_199162", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199162" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K613", "url": "https://www.uniprot.org/uniprotkb/F4K613" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MWF20.21", "url": "https://www.uniprot.org/uniprotkb/F4K613", "locus": {} } ], "crossref": [ { "id": "F4K613", "url": "https://alphafold.ebi.ac.uk/entry/F4K613", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G43490", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G43490", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834369", "url": "https://www.ncbi.nlm.nih.gov/gene/834369", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G43490", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G43490", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WDEAMQI", "url": "https://omabrowser.org/oma/group/WDEAMQI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34660", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34660", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34660:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34660:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_199162", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199162", 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"MHLIVSSNHDMFSYLKRFFKFMENGTTPHKLQKLSACVPSVENGITLGAPRTPPMPASEVQGTTCKPQVKEVRINGFTVSGKKHKVCPPSPLAATMKVKVKENGEPSAKPPHPDLKYLNQILHVPTRELLPEIDDDQEWLLGQSGIKLKKARTDPPDSGESLQVWNQAFRIESADITALPYVVPF", "length": 185, "header": "tr|F4K613-1|F4K613_ARATH Isoform 1 of Myb-like protein X OS=Arabidopsis thaliana OX=3702 GN=MWF20.21 PE=4 SV=1 CANONICAL=F4K613-1" }, "locus": { "chromosome": "5", "start_pos": 17468094, "end_pos": 17469312, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G43490.1", "url": "https://www.ensemblgenomes.org/id/AT5G43490.1" }, { "database": "Ensembl Peptide", "id": "AT5G43490.1", "url": "https://www.ensemblgenomes.org/id/AT5G43490.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K613", "url": "https://www.uniprot.org/uniprotkb/F4K613" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K613", "url": "https://www.uniprot.org/uniprotkb/F4K613" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G43490", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G43490", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4K613-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 185, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4K613-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4K613" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { 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"locus": {} } ], "crossref": [ { "id": "F4K682", "url": "https://alphafold.ebi.ac.uk/entry/F4K682", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G49750", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G49750", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835038", "url": "https://www.ncbi.nlm.nih.gov/gene/835038", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G49750", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G49750", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KNEWTRS", "url": "https://omabrowser.org/oma/group/KNEWTRS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48004", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48004", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48004:SF58", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48004:SF58", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08263", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08263", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": 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Amidase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K6N3-1" }, "locus": { "chromosome": "5", "start_pos": 2326704, "end_pos": 2330142, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G07360.2", "url": "https://www.ensemblgenomes.org/id/AT5G07360.2" }, { "database": "Ensembl Peptide", "id": "AT5G07360.2", "url": "https://www.ensemblgenomes.org/id/AT5G07360.2" } ] } }, { "isoform_ac": "F4K6N3-1", "url": "https://www.uniprot.org/uniprotkb/F4K6N3/entry", "sequence": { "sequence": "MARPSIATCDPSARPCLATRGSLPRSRTCAPLLFLCLLLGLTVFCADANPSDSKLLCSRLLPCEPSIEMVRNCKNLWKLLDRKVSVPCRKITTLTRTVTLTELPDKTMEAKCLQGMFELIDSAFFNETKLQEIAKGATEMNVPIYRANRKLVATKNGGLENPSPLVFNPSWNREVQRVQDKRFKYPSASGVKLPRDEEDIAFMSVLELGELIKTRQITSKELVRIYLKQLKRYNHVLEAVVTYTEELAYKQAKEADDLLSQGTYLGPLHGIPYGLKDIVAVPGYKTTWGSTSFKDQFLDIEAWVYKRLKASGAVLVAKLVTGSMAYDDIWFGGRTRNPWNIEEFSTGSSAGPAASTSAGMVPFAIGSETAGSMTYPAARCGITALRPTFGSVGRTGVMSISESLDKLGPFCRTAADCAVILDAIKGKDPDDLSSREIAFEDPFSVDITKLTVGYTKDADMKVVEVLGSKGVNMVPFELNYTVESVQGILNFTMDVDMLAHFDEWQRTGQEDLYEAQDQWPVELRRARVVTAVDYIQAQRARGKLIREVEKSFTVDAFIGNVTDWEKVCMGNLVGLPVLVIPTGFKNITDPPTNSCRRRTTINAGIYAPPERDHIALALGMAYQSVTDAHRKRPPIDDLGPDDSIPNPPRALIPPRRLHI", "length": 659, "header": "tr|F4K6N3-1|F4K6N3_ARATH Isoform 1 of Amidase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K6N3-1" }, "locus": { "chromosome": "5", "start_pos": 2326693, "end_pos": 2330462, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G07360.3", "url": "https://www.ensemblgenomes.org/id/AT5G07360.3" }, { "database": "Ensembl Peptide", "id": "AT5G07360.3", "url": "https://www.ensemblgenomes.org/id/AT5G07360.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, 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"url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K6N2", "url": "https://www.uniprot.org/uniprotkb/F4K6N2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G07360", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G07360", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "catalytic activity", "id": "GO:0003824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003824", "evidence": [ { "database": "UniProtKB", "id": "F4K6N3", "url": 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"F4K733", "url": "https://alphafold.ebi.ac.uk/entry/F4K733", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G28320", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G28320", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "832916", "url": "https://www.ncbi.nlm.nih.gov/gene/832916", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G28320", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G28320", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR34962", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34962", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34962:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34962:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_198184", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198184", 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Embryo defective protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K733-1" }, "isoforms": [ { "isoform_ac": "F4K733-1", "url": "https://www.uniprot.org/uniprotkb/F4K733/entry", "sequence": { "sequence": "MAETKAKRLLKVEIRFSFLVPIRFTNKSDDSEGLKDRVAHDSNLLNELEDWKVEVNEDEILSRRRRSGLGDLELVMFSQLVKIYLNYHEQREALFSGKAASVPPVKYEEQGIVVDEDEVLSRRRSGLDDLESVSSKLVYAKKLAEQMENGEYVTHKDTSLLKFVSSSSSSSEEEFRFVSSIQNAILRLDLIPKLPAIGRASNEVECTELEKEMMRRKMKAWEERDMSEKGTVEVLHKEGLEKPLMSFEKPKFDRNELMSSISKVKGSEKKLELVNSSHVELDFDDKIHEIKVMARRAREIEAGIELNEKEKRDVNKETGDSDEDISIQSQKSLPHDGLTHSEGDDDKDERLGTSTDSENTELSAFAVPMLNGAMVDSGFPNHEMAASDKKKVSNVVPLVPTDGVIQASDVTKDQLSMMKNSTGRKSRVIRSVKEAKEFLSRRSGEKELTQELSQMAQDSDEIFPKQSDEERGVARKHKLVDKNKILETGTAVKGSSSNKREELKSAKSSSGGTEHIEKEEPSGKENWIEKTTMNLSLETQEPGTIADIAELYRSEYNDELEWMKDEKLRDIVFCVRDNELADGVSVYDPLEKIIPRWKGPSLDKNPEFLNNYHEQREALFSGKAASVSPVKYEEQSSHQELSESASSENTLTPSSEITSSQPKIVVEGSDGSVRPGKKSGKEYWQHTKKWSRGFLELYNAETDPEVKAVMRDMGKDLDRWITEDEIKDAADIMEKLPERNKKFMEKKLNKLKREMELFVRAGTYARDADCLFLTEKSLLMLSVLFKVYGAMVDSGFPEHEIAASDKEKVSNLVPLVPTHGIIQSSEAEYCGICSNPIFTVYLDSVGNVAKVEVDEDEVLSRRSGLDDLELVSSRLQKVLEDQISGSDKLVQLQAKFKNALEEAVLAENGVENNCRDAEISCPDSSAP", "length": 927, "header": "tr|F4K733-1|F4K733_ARATH Isoform 1 of Embryo defective protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K733-1" }, "locus": { "chromosome": "5", "start_pos": 10301936, "end_pos": 10306142, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G28320.1", "url": "https://www.ensemblgenomes.org/id/AT5G28320.1" }, { "database": "Ensembl Peptide", "id": "AT5G28320.1", "url": "https://www.ensemblgenomes.org/id/AT5G28320.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 393, "end_pos": 393, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K733" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser393" }, { "start_pos": 401, "end_pos": 401, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K733" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr401" }, { "start_pos": 416, "end_pos": 416, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K733" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser416" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K733", "url": "https://www.uniprot.org/uniprotkb/F4K733" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4K733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K733" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K733", "url": "https://www.uniprot.org/uniprotkb/F4K733" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G28320", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G28320", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4K733", "url": "https://www.uniprot.org/uniprotkb/F4K733" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 275, "end_pos": 277, "annotation": "n_glycosylation_sequon" }, { "start_pos": 420, "end_pos": 422, "annotation": "n_glycosylation_sequon" }, { "start_pos": 534, "end_pos": 536, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4K733-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 927, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4K733-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4K733" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], 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"length": 1127, "header": "tr|F4K735-1|F4K735_ARATH Isoform 1 of Quinoprotein amine dehydrogenase, beta chain-like RIC1-like guanyl-nucleotide exchange factor OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K735-1" }, "isoforms": [ { "isoform_ac": "F4K735-1", "url": "https://www.uniprot.org/uniprotkb/F4K735/entry", "sequence": { "sequence": "MYMAYGWPQVIPLLPGSCPSSQRVVYLKLAGRLLLVVSPSHLELWGSSQQRVRLGKYMRDDKSVREEGENLQAVWSPDAKLIAVLTSSFFLHIYKIKFTDKRVKPGERQPSELCFATISLLLSEQVPFAGKDLSVSNFVRDSKTMLLGLSDGSLYSISWKGEFGGAFSIGSHPSDSNDDRLLSYTLGNGLVSGVASPTLASDDKFSTNPAIVQLELCTRSKLLFVLNSDGQLVVCSVNKKGLKYTESIRAEKKVGGDAVCASVASEQQILAVGTRKGMVELYDLSHSISLLRTVSLHDWGYSADYTGPVNNIAWTPDNSAFAVGWKSRGLAVWSVSGCRLMSTVRQIGLTSTSSPKINPKQDCKYEPLMSGTSAIQWDEYGYRLFATEEASYDRILAFSFGKCCLNRGVSGKTYVRQVMYGDDRLLMVQAEDTDELKLLHLKLPVSYISQNWPVQHVAASEDGKYLAFAGLHGLILYDIRFKKWRVFGDVSQEQQIHCKGLLWLGKIVVICNYIEASETYELLFYPRYHLDQSSLLCRKVLLGKPMVMDVYQDYILVSYLPFFIHVYHVKIYGELTPSSKADLQLSTVRELSIMTAKSHPAAMGFVPDQHLREGELDNDNLSSDLSDREPSRCLILRGNGELSLLDLVDGRERELTDSVELFWVTCGQSEEKTNLVEEVSWLDYGHRGMQVWYPSLGDDPFMQEDFLQLDPELEFDREVYPLGLLPNVGVVVGVSQRMSFSASAEFACFEPTPQAQTILHCLLRHLLQRDKNEEALLLAQLSAEKPHFSHCLEWLLFTVFDAEISRPNPNRNQISGPGHLKKLSLLRKACDLIKKFPEYYDVVVNVARKTDARHWADLFSAAGISTTLFEDCFQRRWYRTAACYILVIAKLEGVAVSQYCALRLLQATLDESLYDLAGELVRFLLRSGRDIEQAPTESDSLSPKLLGFLIFGSSHKKSSLDKSSSFKEQSPHVASVKSILESHASYLMSGKELSKLVAFVKGTQFDIVDFLQRERYGCAQLQNFAAGLELIGQKLQMSELQNRLDAEFLLAQMCSVKFKEWIVVLATLLQRSEVLYDIFRYDLRLWKAYSVTLESHLAFAHYHDLLQILEAKLSATSREESNRGSIS", "length": 1127, "header": "tr|F4K735-1|F4K735_ARATH Isoform 1 of Quinoprotein amine dehydrogenase, beta chain-like RIC1-like guanyl-nucleotide exchange factor OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K735-1" }, "locus": { "chromosome": "5", "start_pos": 10320114, "end_pos": 10327374, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G28350.1", "url": "https://www.ensemblgenomes.org/id/AT5G28350.1" }, { "database": "Ensembl Peptide", "id": "AT5G28350.1", "url": "https://www.ensemblgenomes.org/id/AT5G28350.1" } ] } }, { "isoform_ac": "F4K736-1", "url": "https://www.uniprot.org/uniprotkb/F4K736/entry", "sequence": { "sequence": "MYMAYGWPQVIPLLPGSCPSSQRVVYLKLAGRLLLVVSPSHLELWGSSQQRVRLGKYMRDDKSVREEGENLQAVWSPDAKLIAVLVPFAGKDLSVSNFVRDSKTMLLGLSDGSLYSISWKGEFGGAFSIGSHPSDSNDDRLLSYTLGNGLVSGVASPTLASDDKFSTNPAIVQLELCTRSKLLFVLNSDGQLVVCSVNKKGLKYTESIRAEKKVGGDAVCASVASEQQILAVGTRKGMVELYDLSHSISLLRTVSLHDWGYSADYTGPVNNIAWTPDNSAFAVGWKSRGLAVWSVSGCRLMSTVRQIGLTSTSSPKINPKQDCKYEPLMSGTSAIQWDEYGYRLFATEEASYDRILAFSFGKCCLNRGVSGKTYVRQVMYGDDRLLMVQAEDTDELKLLHLKLPVSYISQNWPVQHVAASEDGKYLAFAGLHGLILYDIRFKKWRVFGDVSQEQQIHCKGLLWLGKIVVICNYIEASETYELLFYPRYHLDQSSLLCRKVLLGKPMVMDVYQDYILVSYLPFFIHVYHVKIYGELTPSSKADLQLSTVRELSIMTAKSHPAAMGFVPDQHLREGELDNDNLSSDLSDREPSRCLILRGNGELSLLDLVDGRERELTDSVELFWVTCGQSEEKTNLVEEVSWLDYGHRGMQVWYPSLGDDPFMQEDFLQLDPELEFDREVYPLGLLPNVGVVVGVSQRMSFSASAEFACFEPTPQAQTILHCLLRHLLQRDKNEEALLLAQLSAEKPHFSHCLEWLLFTVFDAEISRPNPNRNQISGPGHLKKLSLLRKACDLIKKFPEYYDVVVNVARKTDARHWADLFSAAGISTTLFEDCFQRRWYRTAACYILVIAKLEGVAVSQYCALRLLQATLDESLYDLAGELVRFLLRSGRDIEQAPTESDSLSPKLLGFLIFGSSHKKSSLDKSSSFKEQSPHVASVKSILESHASYLMSGKELSKLVAFVKGTQFDIVDFLQRERYGCAQLQNFAAGLELIGQKLQMSELQNRLDAEFLLAQMCSVKFKEWIVVLATLLQRSEVLYDIFRYDLRLWKAYSVTLESHLAFAHYHDLLQILEAKLSATSREESNRGSIS", "length": 1087, "header": "tr|F4K736-1|F4K736_ARATH Computationally mapped isoform of Quinoprotein amine dehydrogenase, beta chain-like RIC1-like guanyl-nucleotide exchange factor OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K735-1" }, "locus": { "chromosome": "5", "start_pos": 10320205, "end_pos": 10326891, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G28350.2", "url": "https://www.ensemblgenomes.org/id/AT5G28350.2" }, { "database": "Ensembl Peptide", "id": "AT5G28350.2", "url": "https://www.ensemblgenomes.org/id/AT5G28350.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 354, "end_pos": 354, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" }, { "database": "iPTMnet", "id": "F4K736", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K736" } ], "site_lbl": "Ser354" }, { "start_pos": 622, "end_pos": 622, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "iPTMnet", "id": "F4K736", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K736" } ], "site_lbl": "Ser622" }, { "start_pos": 940, "end_pos": 940, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "F4K736", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K736" } ], "site_lbl": "Ser940" }, { "start_pos": 942, "end_pos": 942, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "F4K736", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K736" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser942" }, { "start_pos": 963, "end_pos": 963, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "iPTMnet", "id": "F4K736", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K736" } ], "site_lbl": "Ser963" }, { "start_pos": 965, "end_pos": 965, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" }, { "database": "iPTMnet", "id": "F4K736", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K736" } ], "site_lbl": "Ser965" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K735", "url": "https://www.uniprot.org/uniprotkb/F4K735" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K735", "url": "https://www.uniprot.org/uniprotkb/F4K735" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "F4K735", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K735" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT5G28350", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G28350", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q54WR7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F4K739-1", "uniprot_ac": "F4K739", "uniprot_id": "F4K739_ARATH", "mass": { "chemical_mass": 19688.0, "monoisotopic_mass": 19688.0 }, "refseq": { "ac": "NP_198191", "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198191" }, "gene_names": [ { "name": "F21B23.40", "type": "synonym", "evidence": [ { "id": "NP_198191", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198191" }, { "id": "F4K739", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K739" } ] }, { "name": "F21B23_40", "type": "synonym", "evidence": [ { "id": "NP_198191", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198191" }, { "id": "F4K739", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K739" } ] } ], "protein_names": [ { "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "type": "synonym", "evidence": [ { "id": "NP_198191", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198191" }, { "id": "F4K739", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K739/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4K739", "url": "https://www.uniprot.org/uniprotkb/F4K739" } ], "common_name": 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"https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G28390", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G28390", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR21245", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21245", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_198191", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198191", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G28390", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G28390", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K739", "url": "https://www.uniprot.org/uniprotkb/F4K739", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K739-1", "url": "https://www.uniprot.org/uniprotkb/F4K739-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIRYVLQQPGLAAMPQPPPRPSPPYRGGSGSSSSKQSSDNGRGRSRYNPY", "length": 180, "header": "tr|F4K739-1|F4K739_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K739-1" }, "isoforms": [ { "isoform_ac": "F4K739-1", "url": "https://www.uniprot.org/uniprotkb/F4K739/entry", "sequence": { "sequence": "MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIRYVLQQPGLAAMPQPPPRPSPPYRGGSGSSSSKQSSDNGRGRSRYNPY", "length": 180, "header": "tr|F4K739-1|F4K739_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K739-1" }, "locus": { "chromosome": "5", "start_pos": 10342024, "end_pos": 10342997, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G28390.1", "url": "https://www.ensemblgenomes.org/id/AT5G28390.1" }, { "database": "Ensembl Peptide", "id": "AT5G28390.1", "url": "https://www.ensemblgenomes.org/id/AT5G28390.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K739", "url": "https://www.uniprot.org/uniprotkb/F4K739" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K739", "url": "https://www.uniprot.org/uniprotkb/F4K739" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G28390", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G28390", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": 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"header": "tr|F4K740-1|F4K740_ARATH Isoform 1 of Embryo defective protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K740-1" }, "locus": { "chromosome": "5", "start_pos": 10344024, "end_pos": 10348234, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G28400.1", "url": "https://www.ensemblgenomes.org/id/AT5G28400.1" }, { "database": "Ensembl Peptide", "id": "AT5G28400.1", "url": "https://www.ensemblgenomes.org/id/AT5G28400.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 413, "end_pos": 413, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K740", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K740" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser413" }, { "start_pos": 421, "end_pos": 421, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K740", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K740" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr421" }, { "start_pos": 436, "end_pos": 436, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K740", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K740" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser436" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K740", "url": "https://www.uniprot.org/uniprotkb/F4K740" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4K740", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K740" } ], "reference": [ { "type": "PubMed", "id": "22074104", 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"https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K7A8", "url": "https://www.uniprot.org/uniprotkb/F4K7A8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G43755", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G43755", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4K7A8", "url": 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"database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G50115", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G50115", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835076", "url": "https://www.ncbi.nlm.nih.gov/gene/835076", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G50115", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G50115", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR44137", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44137", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44137:SF51", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44137:SF51", "database": "PANTHER", "categories": [ "Protein Classification" ] }, 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Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K7J1", "url": "https://www.uniprot.org/uniprotkb/F4K7J1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K7J1", "url": "https://www.uniprot.org/uniprotkb/F4K7J1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G50115", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G50115", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4K7J1", "url": "https://www.uniprot.org/uniprotkb/F4K7J1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 157, "end_pos": 159, "annotation": "n_glycosylation_sequon" }, { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 248, "end_pos": 250, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], 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"database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HSIANHR", "url": "https://omabrowser.org/oma/group/HSIANHR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR35767", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35767", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35767:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35767:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT5G56240", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G56240", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K7K7", "url": "https://www.uniprot.org/uniprotkb/F4K7K7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K7K7-1", "url": "https://www.uniprot.org/uniprotkb/F4K7K7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K7K8", 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987, "header": "tr|F4K7K8-1|F4K7K8_ARATH Isoform 1 of Hapless protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4K7K8-1" }, "isoforms": [ { "isoform_ac": "F4K7K7-1", "url": "https://www.uniprot.org/uniprotkb/F4K7K7/entry", "sequence": { "sequence": 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"residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K7K8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K7K8" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Tyr105" }, { "start_pos": 848, "end_pos": 848, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K7K8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K7K8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser848" }, { "start_pos": 858, "end_pos": 858, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K7K8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K7K8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr858" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K7K7", "url": "https://www.uniprot.org/uniprotkb/F4K7K7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel 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Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K8B2", "url": "https://www.uniprot.org/uniprotkb/F4K8B2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "J. Proteome Res.", "date": "2008", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "F4K8B2", "url": "https://www.uniprot.org/uniprotkb/F4K8B2" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46620:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_680194", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680194", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G22080", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G22080", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K8E9", "url": "https://www.uniprot.org/uniprotkb/F4K8E9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K8E9-1", "url": "https://www.uniprot.org/uniprotkb/F4K8E9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C580", "url": "https://www.uniprot.org/uniprotkb/Q9C580", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C580-1", "url": "https://www.uniprot.org/uniprotkb/Q9C580-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEVKVDDDAILKSFLAEVGEVERDNEVGRILSCFKLNPFEHLNLSFDSSTDDVKRQYRKISLMVHPDKCKHPQAQEAFGALAKAQQLLLNDQERDYILTQVHAAKEELKMKRKKQLKKDTASKIKSLVDEGKHEHIYEQSEEFQKELKLKVREILTDQEWRRRKMAMRISEEEGRLKKDEAEQKEIWKKKREHEEQWEGTREKRVSSWRDFQKAGKKAKKGETRPPKLKTEDPNKSYVQRPVKKG", "length": 246, "header": "tr|Q9C580-1|Q9C580_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C580-1" }, "isoforms": [ { "isoform_ac": "F4K8E9-1", "url": "https://www.uniprot.org/uniprotkb/F4K8E9/entry", "sequence": { "sequence": "MGEVKVDDDAILKSFLAEVGEVERDNEVGRILSCFKLNPFEHLNLSFDSSTDDVKRQYRKISLMVHPDKCKHPQAQEAFGALAKAQQLLLNDQERDYILTQVHAAKEELKMKRKKQLKKDTASKIKSLVDEGKHEHIYEQSEEFQKELKLKISEEEGRLKKDEAEQKEIWKKKREHEEQWEGTREKRVSSWRDFQKAGKKAKKGETRPPKLKTEDPNKSYVQRPVKKG", "length": 228, "header": "tr|F4K8E9-1|Q9C580_ARATH Computationally mapped isoform of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C580-1" }, "locus": { "chromosome": "5", "start_pos": 7310171, "end_pos": 7313670, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22080.2", "url": "https://www.ensemblgenomes.org/id/AT5G22080.2" }, { "database": "Ensembl Peptide", "id": "AT5G22080.2", "url": "https://www.ensemblgenomes.org/id/AT5G22080.2" } ] } }, { "isoform_ac": "Q9C580-1", "url": "https://www.uniprot.org/uniprotkb/Q9C580/entry", "sequence": { "sequence": "MGEVKVDDDAILKSFLAEVGEVERDNEVGRILSCFKLNPFEHLNLSFDSSTDDVKRQYRKISLMVHPDKCKHPQAQEAFGALAKAQQLLLNDQERDYILTQVHAAKEELKMKRKKQLKKDTASKIKSLVDEGKHEHIYEQSEEFQKELKLKVREILTDQEWRRRKMAMRISEEEGRLKKDEAEQKEIWKKKREHEEQWEGTREKRVSSWRDFQKAGKKAKKGETRPPKLKTEDPNKSYVQRPVKKG", "length": 246, "header": "tr|Q9C580-1|Q9C580_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C580-1" }, "locus": { "chromosome": "5", "start_pos": 7310378, "end_pos": 7313780, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22080.1", "url": "https://www.ensemblgenomes.org/id/AT5G22080.1" }, { "database": "Ensembl Peptide", "id": "AT5G22080.1", "url": "https://www.ensemblgenomes.org/id/AT5G22080.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, 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"evidence": [ { "database": "UniProtKB", "id": "F4K8E9", "url": "https://www.uniprot.org/uniprotkb/F4K8E9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K8E9", "url": "https://www.uniprot.org/uniprotkb/F4K8E9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G22080", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22080", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286ZJL8-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", 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"evidence": [ { "id": "Q9C580", "url": "https://omabrowser.org/oma/group/Q9C580/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1ND15-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPEERGAGGAAEEAFLTFYSEVKQIEKRDSVLTSKNQIDRLTRPGSSYFNLNPFEVLQMDPEATDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKEKKKQLKKDGKPPNVEEDDPEVFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE", "length": 250 }, "evidence": [ { "id": "Q9C580", "url": "https://omabrowser.org/oma/group/Q9C580/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASGESGTSGGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQLKKEGKPTIVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE", "length": 253 }, "evidence": [ { "id": "Q9C580", "url": "https://omabrowser.org/oma/group/Q9C580/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q642C0-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "Dnajc8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAASGESGASGGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQLKKEGKPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE", "length": 253 }, "evidence": [ { "id": "Q9C580", "url": "https://omabrowser.org/oma/group/Q9C580/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6NZB0-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "Dnajc8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAASGESGASGGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQLKKEGKPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE", "length": 253 }, "evidence": [ { "id": "Q9C580", "url": "https://omabrowser.org/oma/group/Q9C580/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VCH9-1", "protein_name": "J domain-containing protein", "gene_name": "Dmel\\CG10375", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSSSSARDQPGTSHDNFEEFYTEVKEIEKRDSVLTPSQQIDRLLRPGSTYFNLNPFEVLQIEPEVELADIKKRYRTLSILVHPDKNPDNQERAQMAFDIVSRSWKILENELTRKRCLEVYEEAKGRTDQMIAEKRKKLKKEGRPTEPIPEDDPTKYKHAIYVMVMKLFADMERRRQKLDQRDQEERKRKRETEIEEEERIKADREWQQNFEESRQSRVNSWHDFQSGAGKSKKAKKQKHMTGMMVPPKFKPESR", "length": 254 }, "evidence": [ { "id": "Q9C580", "url": "https://omabrowser.org/oma/group/Q9C580/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9C580", "url": "https://www.uniprot.org/uniprotkb/Q9C580" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], 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] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C574-1", "uniprot_ac": "Q9C574", "uniprot_id": "Q9C574_ARATH", "mass": { "chemical_mass": 39709.0, "monoisotopic_mass": 39709.0 }, "refseq": { "ac": "NP_680200", "name": "FAD/NAD(P)-binding oxidoreductase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680200" }, "gene_names": [], "protein_names": [ { "name": "FAD/NAD(P)-binding oxidoreductase family protein", "type": "synonym", "evidence": [ { "id": "NP_680200", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680200" }, { "id": "Q9C574", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C574/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative FAD-dependent oxidoreductase.", "evidence": [ { "database": "UniProtKB", "id": "F4K8F9", "url": "https://www.uniprot.org/uniprotkb/F4K8F9#function" }, { "database": "UniProtKB", "id": "ARBA00057036", "url": "https://www.uniprot.org/uniprotkb/ARBA00057036#function" }, { "database": "UniProtKB", "id": "Q9C574", "url": "https://www.uniprot.org/uniprotkb/Q9C574#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C574", "url": "https://www.uniprot.org/uniprotkb/Q9C574" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C574", "locus": {} } ], "crossref": [ { "id": "AT5G22140", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G22140", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "832275", "url": "https://www.ncbi.nlm.nih.gov/gene/832275", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G22140", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22140", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WRSKYEK", "url": "https://omabrowser.org/oma/group/WRSKYEK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR43735", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43735", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43735:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43735:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07992", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07992", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_680200", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680200", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G22140", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G22140", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K8F9", "url": "https://www.uniprot.org/uniprotkb/F4K8F9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K8F9-1", "url": "https://www.uniprot.org/uniprotkb/F4K8F9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C574", "url": "https://www.uniprot.org/uniprotkb/Q9C574", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C574-1", "url": "https://www.uniprot.org/uniprotkb/Q9C574-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGIESGSKQGKRVVVIGGGIAGSLAAKLLQFDAEVTLIDPKEYFEITWASLRSMVEPKFAERTVINHKSYLKQGRLVTSPAINITESDVMTEDGSVIGYDYLVIATGHNDLFPKTRQEKLSHYQSEYEKIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQKAADKASDWLESKKVEVILNQSVDLSSASDGNKIYRTSGGETIHADIHFLCVGKPLSSQWLNGTVLKDSLDGKGRVMVDEYLRIRGRSNVFAVGDITNIPEMKQGYIAETHANVVVKNIKVMMSGGKKKKMSTYKPGPELAIVSLGRKDSVAQFPFVTVVGCLPGLIKSKDLFVGKTRKARGLNPKLV", "length": 365, "header": "tr|Q9C574-1|Q9C574_ARATH Isoform 1 of FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C574-1" }, "isoforms": [ { "isoform_ac": "F4K8F9-1", "url": "https://www.uniprot.org/uniprotkb/F4K8F9/entry", "sequence": { "sequence": "MVEPKFAERTVINHKSYLKQGRLVTSPAINITESDVMTEDGSVIGYDYLVIATGHNDLFPKTRQEKLSHYQSEYEKIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQKAADKASDWLESKKVEVILNQSVDLSSASDGNKIYRTSGGETIHADIHFLCVGKPLSSQWLNGTVLKDSLDGKGRVMVDEYLRIRGRSNVFAVGDITNIPEMKQGYIAETHANVVVKNIKVMMSGGKKKKMSTYKPGPELAIVSLGRKDSVAQFPFVTVVGCLPGLIKSKDLFVGKTRKARGLNPKLV", "length": 311, "header": "tr|F4K8F9-1|Q9C574_ARATH Computationally mapped isoform of FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C574-1" }, "locus": { "chromosome": "5", "start_pos": 7340122, "end_pos": 7341791, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22140.2", "url": "https://www.ensemblgenomes.org/id/AT5G22140.2" }, { "database": "Ensembl Peptide", "id": "AT5G22140.2", "url": "https://www.ensemblgenomes.org/id/AT5G22140.2" } ] } }, { "isoform_ac": "Q9C574-1", "url": "https://www.uniprot.org/uniprotkb/Q9C574/entry", "sequence": { "sequence": "MEGIESGSKQGKRVVVIGGGIAGSLAAKLLQFDAEVTLIDPKEYFEITWASLRSMVEPKFAERTVINHKSYLKQGRLVTSPAINITESDVMTEDGSVIGYDYLVIATGHNDLFPKTRQEKLSHYQSEYEKIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQKAADKASDWLESKKVEVILNQSVDLSSASDGNKIYRTSGGETIHADIHFLCVGKPLSSQWLNGTVLKDSLDGKGRVMVDEYLRIRGRSNVFAVGDITNIPEMKQGYIAETHANVVVKNIKVMMSGGKKKKMSTYKPGPELAIVSLGRKDSVAQFPFVTVVGCLPGLIKSKDLFVGKTRKARGLNPKLV", "length": 365, "header": "tr|Q9C574-1|Q9C574_ARATH Isoform 1 of FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C574-1" }, "locus": { "chromosome": "5", "start_pos": 7340055, "end_pos": 7341959, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22140.1", "url": "https://www.ensemblgenomes.org/id/AT5G22140.1" }, { "database": "Ensembl Peptide", "id": "AT5G22140.1", "url": "https://www.ensemblgenomes.org/id/AT5G22140.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9C574", "url": "https://www.uniprot.org/uniprotkb/Q9C574" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. 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of GroES-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K8P3-1" }, "locus": { "chromosome": "5", "start_pos": 15121438, "end_pos": 15121836, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G37960.1", "url": "https://www.ensemblgenomes.org/id/AT5G37960.1" }, { "database": "Ensembl Peptide", "id": "AT5G37960.1", "url": "https://www.ensemblgenomes.org/id/AT5G37960.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08268", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08268", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_680391", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680391", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G44345", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G44345", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K8V7", "url": "https://www.uniprot.org/uniprotkb/F4K8V7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K8V7-1", "url": "https://www.uniprot.org/uniprotkb/F4K8V7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSMCIEALGIHTSSSRFGSPAAIVCLRKRQEVALFLEGKEGSGAGYDPVEKQYKVLTWFDGFEEYQVLTLGIGEPSWRNIKCCRPHLHYPLYKGICINGVLYYVGTVTGLLKDFMVVCFDVKYENFRFVEEGDAYLRLVGVTQRNEIVLATCYAVPFYLFYYNMERKTIIRLQIQGMEVFP", "length": 181, "header": "tr|F4K8V7-1|F4K8V7_ARATH Isoform 1 of F-box associated ubiquitination effector family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K8V7-1" }, "isoforms": [ { "isoform_ac": "F4K8V7-1", "url": "https://www.uniprot.org/uniprotkb/F4K8V7/entry", "sequence": { "sequence": "MSMCIEALGIHTSSSRFGSPAAIVCLRKRQEVALFLEGKEGSGAGYDPVEKQYKVLTWFDGFEEYQVLTLGIGEPSWRNIKCCRPHLHYPLYKGICINGVLYYVGTVTGLLKDFMVVCFDVKYENFRFVEEGDAYLRLVGVTQRNEIVLATCYAVPFYLFYYNMERKTIIRLQIQGMEVFP", "length": 181, "header": "tr|F4K8V7-1|F4K8V7_ARATH Isoform 1 of F-box associated ubiquitination effector family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4K8V7-1" }, "locus": { "chromosome": "5", "start_pos": 17862113, "end_pos": 17863079, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G44345.1", "url": "https://www.ensemblgenomes.org/id/AT5G44345.1" }, { "database": "Ensembl Peptide", "id": "AT5G44345.1", "url": "https://www.ensemblgenomes.org/id/AT5G44345.1" 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"journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K8V7", "url": "https://www.uniprot.org/uniprotkb/F4K8V7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G44345", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G44345", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4K8V7", "url": "https://www.uniprot.org/uniprotkb/F4K8V7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], 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Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K9W2", "url": "https://www.uniprot.org/uniprotkb/F4K9W2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "F4K9W2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K9W2" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4K9W2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K9W2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", 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"MKILKGMYKSLFDLLRFSFGLGWDPTTKKFTARDDVWDDYLKDLRMIFGLNVATGQNVVGLGDSIVVDASQVGDDDGPHDLSHVQILDDMGGSHDVFSSLEKRRAESMQEAEEKEVEDKANNVWDAIKEISDLDADLCYETMTLVDSLGMKSVFVHMSTEQHKGWIMRSLRK", "length": 172, "header": "tr|F4KA16-1|F4KA16_ARATH Isoform 1 of Myb/SANT-like DNA-binding domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4KA16-1" }, "isoforms": [ { "isoform_ac": "F4KA16-1", "url": "https://www.uniprot.org/uniprotkb/F4KA16/entry", "sequence": { "sequence": "MKILKGMYKSLFDLLRFSFGLGWDPTTKKFTARDDVWDDYLKDLRMIFGLNVATGQNVVGLGDSIVVDASQVGDDDGPHDLSHVQILDDMGGSHDVFSSLEKRRAESMQEAEEKEVEDKANNVWDAIKEISDLDADLCYETMTLVDSLGMKSVFVHMSTEQHKGWIMRSLRK", "length": 172, "header": "tr|F4KA16-1|F4KA16_ARATH Isoform 1 of Myb/SANT-like DNA-binding domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4KA16-1" }, "locus": { "chromosome": "5", "start_pos": 10831799, "end_pos": 10832532, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G28820.1", "url": 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}, { "id": "IPR006566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G26340", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G26340", "database": "KEGG 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"MDRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHTGDYKSFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAIDIGLWIGFALTRRLRQLKINIRTSSNDASFSLPSSLYTSDTLETLRLINFVLLDVPSSVCLPSLKVLHLKTVDYEDDASLPSLLFGCPNLEELFVERHDQDLEMDVTFVVPSLRRLSMIDKNYGQCDRYVIDVPSLKYLNITDDAVYDVRQIENMPELVEAHVDITQGVTHKFLRALTSVRQLSLCLSLSEVMCPSGIIFSQLVHLNLSTVVKGWWDLLTSMLQDSPKLQSLKLIDKQHESGLCGIETPIGWKLPSSVPECLLFSLEAFEWIGYKGRRGDREVATYVLKNAACLRTAKFSPESTDVGEKYHMLKELASVPTASTSSKLLFD", "length": 419, "header": "sp|Q8H1R7-1|FDL27_ARATH Isoform 1 of F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8H1R7-1" }, "isoforms": [ { "isoform_ac": "Q8H1R7-1", "url": "https://www.uniprot.org/uniprotkb/Q8H1R7/entry#Q8H1R7-1", "sequence": { "sequence": 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S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q8L443", "url": "https://www.uniprot.org/uniprotkb/Q8L443" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": 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Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q8L443", "url": "https://www.uniprot.org/uniprotkb/Q8L443" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q8L443", "url": "https://www.uniprot.org/uniprotkb/Q8L443" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Overexpression of 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"database": "Ensembl Peptide", "id": "AT3G19470.1", "url": "https://www.ensemblgenomes.org/id/AT3G19470.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structural analysis of Arabidopsis thaliana chromosome 3. 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Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, 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Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q8LG03", "url": "https://www.uniprot.org/uniprotkb/Q8LG03" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": 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"AT2G11270", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G11270", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "815597", "url": "https://www.ncbi.nlm.nih.gov/gene/815597", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016142", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016142", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G11270", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G11270", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT2G11270", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G11270", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q8RV72", "url": "https://www.uniprot.org/uniprotkb/Q8RV72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8RV72-1", "url": "https://www.uniprot.org/uniprotkb/Q8RV72-1", "database": 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}, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040275", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040275", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G39450", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G39450", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KGYGFRY", "url": "https://omabrowser.org/oma/group/KGYGFRY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q8RWD6", "url": "https://www.orthodb.org/?gene=Q8RWD6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31370", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31370", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31370:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31370:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q8RWD6", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q8RWD6", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_198761", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198761", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G39450", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G39450", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q8RWD6", "url": "https://www.uniprot.org/uniprotkb/Q8RWD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8RWD6-1", "url": "https://www.uniprot.org/uniprotkb/Q8RWD6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNQMRNGDLGSESFGTCLLLSLPEDVIAVIARFVSPRDICNLSLCCKSLCDVVDSERIWLVQCEVVKVLPLSEIIQWRIGISSYKALCWFLGEVMKPLVGVWVHQNPELGNVVYVMPGFLSVVGCRIIPQEVGPLGIEEARVMWSPVFEIICGFDGSAKFFLHGRDGKVQCCLHPGFVRGIEKSCNVLLLEVETRREKKLCNEIDETVLLVETGVQLPFRKLPFSYRRNLLHIVTSTVGIPVPDLSSEKLFPTSKDDEAVLLERRTMLLKMHKFGGDWNHMNLEDECTNIPNQVDINKSWKHLGFEGDIRNMDAENQTQRKSFSRYFRSGIKHILGRSSSSKNMSSSRSETRPLNLQKFLNFGDSIGLSLKASNIKLSSYQGWPNMDETRYALYKLPIKDPIANDEYAGLWGGTFGWPPGKCTEDKPGKAFFLLMLSYEESQDGTERLLIGTKILEGTHYGMHPNGSAMFVIKIDSPSFEGFPFDTNGEDFEHSYAGEGTAKGYGFRYPGYKPGTLFVTSKGLLMFIWKATKAVLTLQRLNLGELLRKGVCVSPLPPCLNFAYLIKCHTNVFAPERRRS", "length": 579, "header": "sp|Q8RWD6-1|FB271_ARATH Isoform 1 of F-box protein At5g39450 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8RWD6-1" }, "isoforms": [ { "isoform_ac": "Q8RWD6-1", "url": "https://www.uniprot.org/uniprotkb/Q8RWD6/entry#Q8RWD6-1", "sequence": { "sequence": "MNQMRNGDLGSESFGTCLLLSLPEDVIAVIARFVSPRDICNLSLCCKSLCDVVDSERIWLVQCEVVKVLPLSEIIQWRIGISSYKALCWFLGEVMKPLVGVWVHQNPELGNVVYVMPGFLSVVGCRIIPQEVGPLGIEEARVMWSPVFEIICGFDGSAKFFLHGRDGKVQCCLHPGFVRGIEKSCNVLLLEVETRREKKLCNEIDETVLLVETGVQLPFRKLPFSYRRNLLHIVTSTVGIPVPDLSSEKLFPTSKDDEAVLLERRTMLLKMHKFGGDWNHMNLEDECTNIPNQVDINKSWKHLGFEGDIRNMDAENQTQRKSFSRYFRSGIKHILGRSSSSKNMSSSRSETRPLNLQKFLNFGDSIGLSLKASNIKLSSYQGWPNMDETRYALYKLPIKDPIANDEYAGLWGGTFGWPPGKCTEDKPGKAFFLLMLSYEESQDGTERLLIGTKILEGTHYGMHPNGSAMFVIKIDSPSFEGFPFDTNGEDFEHSYAGEGTAKGYGFRYPGYKPGTLFVTSKGLLMFIWKATKAVLTLQRLNLGELLRKGVCVSPLPPCLNFAYLIKCHTNVFAPERRRS", "length": 579, "header": "sp|Q8RWD6-1|FB271_ARATH Isoform 1 of F-box protein At5g39450 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8RWD6-1" }, "locus": { "chromosome": "5", "start_pos": 15785717, "end_pos": 15788150, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G39450.1", "url": "https://www.ensemblgenomes.org/id/AT5G39450.1" }, { "database": "Ensembl Peptide", "id": "AT5G39450.1", "url": "https://www.ensemblgenomes.org/id/AT5G39450.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q8RWD6", "url": "https://www.uniprot.org/uniprotkb/Q8RWD6" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q8RWD6", "url": "https://www.uniprot.org/uniprotkb/Q8RWD6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Sato S, Kaneko T, Kotani H, Nakamura Y, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q8RWD6", "url": "https://www.uniprot.org/uniprotkb/Q8RWD6" } ], "reference": [ { "type": "PubMed", "id": "9628582", "url": "https://glygen.org/publication/PubMed/9628582" } ] } ], "pathway": [ { "id": "ath:AT5G39450", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G39450", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q8RWD6", "url": "https://www.uniprot.org/uniprotkb/Q8RWD6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 297, "end_pos": 299, "annotation": "n_glycosylation_sequon" }, { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" }, { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" }, { "start_pos": 465, "end_pos": 467, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q8RWD6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 579, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q8RWD6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q8RWD6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q8RWD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWD6" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 16, "end_pos": 62, "start_aa": "Thr", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 297, "end_pos": 299 }, { "start_pos": 316, "end_pos": 318 }, { "start_pos": 343, "end_pos": 345 }, { "start_pos": 41, "end_pos": 43 }, { "start_pos": 465, "end_pos": 467 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"https://www.ncbi.nlm.nih.gov/protein/NP_173807" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RXM6", "url": "https://www.uniprot.org/uniprotkb/Q8RXM6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q8RXM6", "locus": {} } ], "crossref": [ { "id": "Q8RXM6", "url": "https://alphafold.ebi.ac.uk/entry/Q8RXM6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G23960", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G23960", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "839007", "url": "https://www.ncbi.nlm.nih.gov/gene/839007", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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SV=1 CANONICAL=Q8RXM6-1" }, "isoforms": [ { "isoform_ac": "Q8RXM6-1", "url": "https://www.uniprot.org/uniprotkb/Q8RXM6/entry#Q8RXM6-1", "sequence": { "sequence": "MATDDFFSLQREYWRQVAESDGFDIESVQIPPSMYGRINGLIPHNCEINTPLPYRVLGKHYAKLGLHRYNMLKGTKFEFGRLMKFNMLQNCVASFYITLEAYDYGVPGTSHPQTFQVRIDEKIFGSLDLTVSIARRTTDEVTTKKPFIHHYHGGAVADNIIFKGELPDWPSDDVLKDRERFYVIMNESEWRATAWISLYLELVLCAHDKFITNTDLSRLSIEKVAIETSIGDALLYERLEAKSANVYIWFKRLEKPRVPQQVFVTGMDVERKAIIRRVMDSTGYLTLVGKLCGGVTKVRQFN", "length": 302, "header": "sp|Q8RXM6-1|Y1396_ARATH Isoform 1 of UPF0725 protein At1g23960 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8RXM6-1" }, "locus": { "chromosome": "1", "start_pos": 8478407, "end_pos": 8480242, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G23960.2", "url": "https://www.ensemblgenomes.org/id/AT1G23960.2" }, { "database": "Ensembl Peptide", "id": "AT1G23960.2", "url": "https://www.ensemblgenomes.org/id/AT1G23960.2" } ] } } ], "glycosylation": [], 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], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G23960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G23960", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q8RXM6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 302, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q8RXM6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q8RXM6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], 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"name": "Chaperone DnaJ-domain superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325042" }, "gene_names": [], "protein_names": [ { "name": "Chaperone DnaJ-domain superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_001325042", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325042" }, { "id": "Q8RYC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RYC5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RYC5", "url": "https://www.uniprot.org/uniprotkb/Q8RYC5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q8RYC5", "locus": {} } ], "crossref": 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"categories": [ "Protein Classification" ] }, { "id": "PTHR45504", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45504", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45504:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45504:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001325042", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325042", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G33735", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G33735", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q8RYC5", "url": "https://www.uniprot.org/uniprotkb/Q8RYC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8RYC5-1", "url": "https://www.uniprot.org/uniprotkb/Q8RYC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWCSDWGDSHGFDFFDFEDYKDHYKVLELNCDASDDEIRSSFIRLALKWHPDKFKEEDSATSRFQEINEAYQVLSDPIARQEYDKKRMRRIYEHNTELLNEYKELILTCNGLGVKHYLW", "length": 119, "header": "tr|Q8RYC5-1|Q8RYC5_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8RYC5-1" }, "isoforms": [ { "isoform_ac": "Q8RYC5-1", "url": "https://www.uniprot.org/uniprotkb/Q8RYC5/entry", "sequence": { "sequence": "MWCSDWGDSHGFDFFDFEDYKDHYKVLELNCDASDDEIRSSFIRLALKWHPDKFKEEDSATSRFQEINEAYQVLSDPIARQEYDKKRMRRIYEHNTELLNEYKELILTCNGLGVKHYLW", "length": 119, "header": "tr|Q8RYC5-1|Q8RYC5_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8RYC5-1" }, "locus": { "chromosome": "2", "start_pos": 14268269, "end_pos": 14269616, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G33735.2", "url": "https://www.ensemblgenomes.org/id/AT2G33735.2" }, { "database": "Ensembl Peptide", "id": "AT2G33735.2", "url": "https://www.ensemblgenomes.org/id/AT2G33735.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "Q8RYC5", "url": "https://www.uniprot.org/uniprotkb/Q8RYC5" } ], "reference": [ { "type": "PubMed", "id": 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"Ensembl Transcript", "id": "AT2G05430.1", "url": "https://www.ensemblgenomes.org/id/AT2G05430.1" }, { "database": "Ensembl Peptide", "id": "AT2G05430.1", "url": "https://www.ensemblgenomes.org/id/AT2G05430.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "Q8S898", "url": "https://www.uniprot.org/uniprotkb/Q8S898" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q8S898", "url": "https://www.uniprot.org/uniprotkb/Q8S898" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G05430", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G05430", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q8S898", "url": "https://www.uniprot.org/uniprotkb/Q8S898" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "Q8S898", "url": "https://www.uniprot.org/uniprotkb/Q8S898" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "peptidase activity", "id": "GO:0008233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008233", "evidence": [ { "database": "UniProtKB", "id": "Q8S898", "url": "https://www.uniprot.org/uniprotkb/Q8S898" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], 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"categories": [ "Protein Classification" ] }, { "id": "PF00892", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00892", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_565328", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_565328", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G05755", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G05755", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q8S8A2", "url": "https://www.uniprot.org/uniprotkb/Q8S8A2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8S8A2-1", "url": "https://www.uniprot.org/uniprotkb/Q8S8A2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSSPETRIADEHLSLELTVRDLESTALESASSAPELSSDEIIPLLNQNQRPRINIFSASYTRRKPSEQVIKVTETEISPVTQFSSWIWSGSRYSGLLCMALSSTLYLIMELVSDTFSVQPIPLFETAFMRCTIILILSYLWLKRIGQPIFGPAHARKLLVSRALVGYLSLFSFIFSIQMLPLSQAIVLSFLNPIMASIAARVVMHEKLKITDIGGLACSFFGVLFIFGPTLTVQVGLEGKNENLKGNHHIYAFLLGLFSSITGGITYCLIKAAAKASEQPVITVLSFGLVACPATAICMFSFESFVLPAFDTLVSMIVLGLLAFCAEVLLARGLQLEKISKAANVLYIEVVLSQLWLVSTGKTGSPGLFSRLVGCLLILLSVGYTVYIGPAKDTESSIP", "length": 401, "header": "tr|Q8S8A2-1|Q8S8A2_ARATH Isoform 1 of Nodulin MtN21 /EamA-like transporter family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8S8A2-1" }, "isoforms": [ { "isoform_ac": "Q8S8A2-1", "url": "https://www.uniprot.org/uniprotkb/Q8S8A2/entry", "sequence": { "sequence": "MASSSPETRIADEHLSLELTVRDLESTALESASSAPELSSDEIIPLLNQNQRPRINIFSASYTRRKPSEQVIKVTETEISPVTQFSSWIWSGSRYSGLLCMALSSTLYLIMELVSDTFSVQPIPLFETAFMRCTIILILSYLWLKRIGQPIFGPAHARKLLVSRALVGYLSLFSFIFSIQMLPLSQAIVLSFLNPIMASIAARVVMHEKLKITDIGGLACSFFGVLFIFGPTLTVQVGLEGKNENLKGNHHIYAFLLGLFSSITGGITYCLIKAAAKASEQPVITVLSFGLVACPATAICMFSFESFVLPAFDTLVSMIVLGLLAFCAEVLLARGLQLEKISKAANVLYIEVVLSQLWLVSTGKTGSPGLFSRLVGCLLILLSVGYTVYIGPAKDTESSIP", "length": 401, "header": "tr|Q8S8A2-1|Q8S8A2_ARATH Isoform 1 of Nodulin MtN21 /EamA-like transporter family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8S8A2-1" }, "locus": { "chromosome": "2", "start_pos": 2170760, "end_pos": 2173943, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G05755.1", "url": "https://www.ensemblgenomes.org/id/AT2G05755.1" }, { "database": "Ensembl Peptide", "id": "AT2G05755.1", "url": "https://www.ensemblgenomes.org/id/AT2G05755.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 61, "end_pos": 61, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8S8A2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8A2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser61" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "Q8S8A2", "url": "https://www.uniprot.org/uniprotkb/Q8S8A2" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8S8A2", "url": "https://www.uniprot.org/uniprotkb/Q8S8A2" }, { "database": "iPTMnet", "id": "Q8S8A2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8A2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "Q8S8A2", "url": "https://www.uniprot.org/uniprotkb/Q8S8A2" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8S8A2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8A2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8S8A2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8A2" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8S8A2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8A2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q8S8A2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8A2" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan 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"sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q8S8G6-1", "uniprot_ac": "Q8S8G6", "uniprot_id": "Q8S8G6_ARATH", "mass": { "chemical_mass": 44847.0, "monoisotopic_mass": 44847.0 }, "refseq": { "ac": "NP_565432", "name": "alpha/beta-Hydrolases superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_565432" }, "gene_names": [], "protein_names": [ { "name": "Alpha/beta-Hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "Q8S8G6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8G6/entry#names_and_taxonomy" } ] }, { "name": "alpha/beta-Hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_565432", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_565432" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S8G6", "url": "https://www.uniprot.org/uniprotkb/Q8S8G6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q8S8G6", "locus": {} } ], "crossref": [ { "id": "816340", "url": "https://www.ncbi.nlm.nih.gov/gene/816340", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008547", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008547", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G18245", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G18245", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VECLFWR", "url": "https://omabrowser.org/oma/group/VECLFWR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q8S8G6", "url": "https://www.orthodb.org/?gene=Q8S8G6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12265", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12265", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12265:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12265:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05705", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05705", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_565432", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_565432", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G18245", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G18245", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q8S8G6", "url": "https://www.uniprot.org/uniprotkb/Q8S8G6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8S8G6-1", "url": "https://www.uniprot.org/uniprotkb/Q8S8G6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEATTRILSTSSALNRLLLLSKLNLKSDPRNINSTNQLLHNAVTRKSSISAARIRCSSLPANANLFRSLFFLTSTFRLENTAVHANPFRSEPNDGVAVWNRAPRIVNGGGNAAIFGGNEGKETTVVLLGWLGAKAKHLRRYVEWYNSRGINAVTFTVDVRDLLRLDLGRRLERRIAEFGNELVNWVSEKEDDGREKCLVFHSFSNTGWLVYGALLESFIGRQDLVERIKGCIIDSGGADPLDTKIWAAGFTAAILKKRSSTITTEPNSPIKEEDASTPQKKEPLGIENIMLSSLEKLFPIFLNHPDVNTRLTKIIQKLYENHPPCPQLYLYSSGDKVVPSHSVELRIREQQKIGRKIHSFNFKSSPHVDHYRNFPDLYSSQLQNFLQECFTPTKQQAL", "length": 398, "header": "tr|Q8S8G6-1|Q8S8G6_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8S8G6-1" }, "isoforms": [ { "isoform_ac": "Q8S8G6-1", "url": "https://www.uniprot.org/uniprotkb/Q8S8G6/entry", "sequence": { "sequence": "MEATTRILSTSSALNRLLLLSKLNLKSDPRNINSTNQLLHNAVTRKSSISAARIRCSSLPANANLFRSLFFLTSTFRLENTAVHANPFRSEPNDGVAVWNRAPRIVNGGGNAAIFGGNEGKETTVVLLGWLGAKAKHLRRYVEWYNSRGINAVTFTVDVRDLLRLDLGRRLERRIAEFGNELVNWVSEKEDDGREKCLVFHSFSNTGWLVYGALLESFIGRQDLVERIKGCIIDSGGADPLDTKIWAAGFTAAILKKRSSTITTEPNSPIKEEDASTPQKKEPLGIENIMLSSLEKLFPIFLNHPDVNTRLTKIIQKLYENHPPCPQLYLYSSGDKVVPSHSVELRIREQQKIGRKIHSFNFKSSPHVDHYRNFPDLYSSQLQNFLQECFTPTKQQAL", "length": 398, "header": "tr|Q8S8G6-1|Q8S8G6_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8S8G6-1" }, "locus": { "chromosome": "2", "start_pos": 7936990, "end_pos": 7939664, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G18245.1", "url": "https://www.ensemblgenomes.org/id/AT2G18245.1" }, { "database": "Ensembl Peptide", "id": "AT2G18245.1", "url": "https://www.ensemblgenomes.org/id/AT2G18245.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "Q8S8G6", "url": "https://www.uniprot.org/uniprotkb/Q8S8G6" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q8S8G6", "url": "https://www.uniprot.org/uniprotkb/Q8S8G6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G18245", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G18245", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IDL9-1", "protein_name": "Transmembrane protein 53", "gene_name": "Tmem53", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASAELDYSIEIPDQPCWSQKNPCHDGKKARKRLPVVILLGWGGCRDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVMAQKLLELLFDYEIEREPLLFHVFSNGGVMLYRYVLELLQTHQRFRHLHVVGTVFDSGPGDSNLVGALRALAIILERRPTVLRLLLLVAFALVVVLLHFLLSPFTALFHTHFYDRLQDSGSHWPELYLYSRADEVVSARDVERMVEERLAHQVLVRSVDFVSSAHVSHLRDYPTYYTSLCVDFMQNCVQC", "length": 277 }, "evidence": [ { "id": "Q8S8G6", "url": "https://omabrowser.org/oma/group/Q8S8G6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A4X1W9T2-1", "protein_name": "Transmembrane protein 53", "gene_name": "TMEM53", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MASAQLDYTIEIPDQSCRSQEDSPNQGGKEAGTRQPLVILLGWGGCTDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLELLFDYEVEKEPLLFHVFSNAGVMLYRHVLELLQTQRRFCHLRVVGTIFDSGPGDSNLLGALRALAAVLGHRPAALRLLLLAAFALVAVLVHGLLAPLTALFHTHFYDRLLNAASRWPELYLYSRADEVVLARDVERMVEARLAHRVLVRSVDFVSSAHVSHLRDYPTYYTSLCVNFMRSCVHG", "length": 278 }, "evidence": [ { "id": "Q8S8G6", "url": "https://omabrowser.org/oma/group/Q8S8G6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A1Z6G9-1", "protein_name": "Transmembrane protein 53", "gene_name": "Dmel\\CG8245", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSISASHPCGLNADGTATQYKESTATIQTSGLQSSPRSFLPEREDTLEYFIKFPKPSSKNEFVLAKDHDGEDSHVPIVMLLGWAGCQDRYLMKYSKIYEERGLITVRYTAPVDSLFWKRSEMIPIGEKILKLIQDMNFDAHPLIFHIFSNGGAYLYQHINLAVIKHKSPLQVRGVIFDSAPGERRIISLYRAITAIYGREKRCNCLAALVITITLSIMWFVEESISALKSLFVPSSPVRPSPFCDLKNEANRYPQLFLYSKGDIVIPYRDVEKFIRLRRDQGIQVSSVCFEDAEHVKIYTKYPKQYVQCVCNFIRNCMTIPPLKEAVNSEPSESVSRVNLKYD", "length": 343 }, "evidence": [ { "id": "Q8S8G6", "url": "https://omabrowser.org/oma/group/Q8S8G6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "D3ZPB8-1", "protein_name": "Transmembrane protein 53", "gene_name": "Tmem53", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": 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"https://omabrowser.org/oma/group/Q8S8G6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6P2H8-1", "protein_name": "Transmembrane protein 53", "gene_name": "TMEM53", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASAELDYTIEIPDQPCWSQKNSPSPGGKEAETRQPVVILLGWGGCKDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLELLFDYEIEKEPLLFHVFSNGGVMLYRYVLELLQTRRFCRLRVVGTIFDSAPGDSNLVGALRALAAILERRAAMLRLLLLVAFALVVVLFHVLLAPITALFHTHFYDRLQDAGSRWPELYLYSRADEVVLARDIERMVEARLARRVLARSVDFVSSAHVSHLRDYPTYYTSLCVDFMRNCVRC", "length": 277 }, "evidence": [ { "id": "Q8S8G6", "url": "https://omabrowser.org/oma/group/Q8S8G6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D0Z3-1", "protein_name": "Transmembrane protein 53", "gene_name": "Tmem53", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASAELDYSIEIPDQPCWSQKNRQGGKEAGKQQPVVILLGWGGCRDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVIAQKLLELLFDYEIEREPLLFHVFSNAGVMLYRYVLELLQTHQRFRHLHVVGTIFDSGPGDSNLIGALRALATILERRPAVLRLLLLAAFALVVILFHFLLAPFTALFHTHFYDRLQDSGSCWPELYLYSRADKVVSARDVERMVEARLAHQVMVRGVDFVSSAHVSHLRDYPTYYTSLCVDFMHNCVQC", "length": 276 }, "evidence": [ { "id": "Q8S8G6", "url": "https://omabrowser.org/oma/group/Q8S8G6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], 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"MNMSSSSRKLSRLFNIVTQNQKSPVLLSSDQEAARRITACLVEKSTIGKLQSNPSLLFNLNSNVTRLVLSEPTLPTQSCIDFFKLLREFESNLKPDLTAVVTLSHRLYSNRRFNEMRSLLNSVVNDGFYKRPVEELGSAMVDCDISEEKFEFFEKFFDLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIGSMHSPET", "length": 624, "header": "sp|Q8S8P6-1|PP180_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q8S8P6-1" }, "isoforms": [ { "isoform_ac": "Q8S8P6-1", "url": "https://www.uniprot.org/uniprotkb/Q8S8P6/entry#Q8S8P6-1", "sequence": { "sequence": 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Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q8S8S8", "url": "https://www.uniprot.org/uniprotkb/Q8S8S8" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8S8S8", "url": "https://www.uniprot.org/uniprotkb/Q8S8S8" }, { "database": "iPTMnet", "id": "Q8S8S8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8S8" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8S8S8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8S8" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8S8S8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8S8" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8S8S8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8S8" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8S8S8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8S8" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8S8S8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8S8" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8S8S8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8S8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q8S8S8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8S8" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q8S8S8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8S8" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q8S8S8", "url": "https://www.uniprot.org/uniprotkb/Q8S8S8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8S8S8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S8S8" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT2G19385", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G19385", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Y4W0-1", "protein_name": "Cell growth-regulating nucleolar protein", "gene_name": "LYAR", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVVFTCNACGESVKKAQVEKHVNICRHCECLSCMDCGKDFWGDDYKDHVKCVTEDEKYGGKDFEAKTSKGDAKQQEWLQKIHEVMKKPNINPKVRNILEQMRSFGNIPRKKVKFQNWMKNSLRVTDSTLQNQVWDIFSEATGDVSGKKEHDKPQQKDGVQSAESGQKTMAEENGVTDGKTEQKKNKKERKEERQKNNKKEKKDLKLENQPASSETKKNKKSKKQKESLENEFEMNGNGHQNEIEEETNVRKRKHKHVEEEPCITKKKMKTESVSEDVETENTNGNEETLGKGKFNWKGTIKAVLKQAPDNEISIKKLRKKVIAQYYAVAGEHHKSEEDILVIFNKKVNNNPKFKVLKDKVKLLK", "length": 364 }, "evidence": [ { "id": "Q8S8S8", "url": "https://omabrowser.org/oma/group/Q8S8S8/", "database": "OMA" } ], "glygen_name": "Chicken", 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"MKSRRRISWEEINESWLNGLCVFCKEPEAPDHHMKHKNLGLLMIYGNDDHLSNGGIGESIDHRSMNLVHEEREEHSKLDNHKDLVQRTIMEEREEHSNSEILKSVEPREVNFGLENLDSVVMNEYQEQDWVKQNMNKRFEVEDDVDRGQKLLSITENCSAHQVFGKTSQHEEKLEIKKKAKGFKSWMFKFKLAKKTIRKRDNKGWFHTWSRKVGWRKNKPMKLQFVSHQVKESSHRDKDSFAGKKSIKQEMCVEVESLLQQQDLRRIKETQADQGDSYVVVRKLLPHLESVCATKSFLDNDSMSKLEAELTDSKMRTAGVTQHQVSIFVMETSHHHQVLEDFDMHMVIEDQQPIVTEALRLISNDFHSDVAELCEQLTCDESHKPKQRLAPKSWMFKYRRDHKILHSPTMSRNVRMVVFRKMEAAERSQHLVTHRFHVGPLEMDTQDSEIGIIEVLRRVMMLFQNSIVQAKMMVTKRKKTFYKSRRFKFKHRVVPRALQYGFEVKMKQKVSTEYPCLFLIGKEAELVHILLGYRDVMFNLKKKGRFRLFQSFSKQLLLWLRHDALLIKPFLLSDERFQIKHTWRTKFIHSVSSIGVGHYEYSIWTQSDKGTQLFYSRRLVVYKLGSEAKNVVEVSQRVYQLVKLKFAKDERKLEVIQSQTFDPGIGIESQELLENTYSN", "length": 679, "header": "tr|Q8S8T7-1|Q8S8T7_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8S8T7-1" }, "isoforms": [ { "isoform_ac": "Q8S8T7-1", "url": "https://www.uniprot.org/uniprotkb/Q8S8T7/entry", "sequence": { "sequence": "MKSRRRISWEEINESWLNGLCVFCKEPEAPDHHMKHKNLGLLMIYGNDDHLSNGGIGESIDHRSMNLVHEEREEHSKLDNHKDLVQRTIMEEREEHSNSEILKSVEPREVNFGLENLDSVVMNEYQEQDWVKQNMNKRFEVEDDVDRGQKLLSITENCSAHQVFGKTSQHEEKLEIKKKAKGFKSWMFKFKLAKKTIRKRDNKGWFHTWSRKVGWRKNKPMKLQFVSHQVKESSHRDKDSFAGKKSIKQEMCVEVESLLQQQDLRRIKETQADQGDSYVVVRKLLPHLESVCATKSFLDNDSMSKLEAELTDSKMRTAGVTQHQVSIFVMETSHHHQVLEDFDMHMVIEDQQPIVTEALRLISNDFHSDVAELCEQLTCDESHKPKQRLAPKSWMFKYRRDHKILHSPTMSRNVRMVVFRKMEAAERSQHLVTHRFHVGPLEMDTQDSEIGIIEVLRRVMMLFQNSIVQAKMMVTKRKKTFYKSRRFKFKHRVVPRALQYGFEVKMKQKVSTEYPCLFLIGKEAELVHILLGYRDVMFNLKKKGRFRLFQSFSKQLLLWLRHDALLIKPFLLSDERFQIKHTWRTKFIHSVSSIGVGHYEYSIWTQSDKGTQLFYSRRLVVYKLGSEAKNVVEVSQRVYQLVKLKFAKDERKLEVIQSQTFDPGIGIESQELLENTYSN", "length": 679, "header": "tr|Q8S8T7-1|Q8S8T7_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q8S8T7-1" }, "locus": { "chromosome": "2", "start_pos": 17092669, "end_pos": 17095132, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G40955.1", "url": "https://www.ensemblgenomes.org/id/AT2G40955.1" }, { "database": "Ensembl Peptide", "id": "AT2G40955.1", "url": "https://www.ensemblgenomes.org/id/AT2G40955.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "Q8S8T7", "url": "https://www.uniprot.org/uniprotkb/Q8S8T7" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants.", "journal": "Mol. Cell. Proteomics", "date": "2007", "authors": "Maor Rudy, Jones Alex, N\u00fchse Thomas S, Studholme David J, Peck Scott C, Shirasu Ken", "evidence": [ { "database": "UniProtKB", "id": "Q8S8T7", "url": "https://www.uniprot.org/uniprotkb/Q8S8T7" } ], "reference": [ { "type": "PubMed", "id": "17272265", "url": "https://glygen.org/publication/PubMed/17272265" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q8S8T7", "url": "https://www.uniprot.org/uniprotkb/Q8S8T7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G40955", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G40955", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q8S8T7", "url": "https://www.uniprot.org/uniprotkb/Q8S8T7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" }, { "start_pos": 157, "end_pos": 159, "annotation": "n_glycosylation_sequon" }, { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 13, "end_pos": 15 }, { "start_pos": 157, "end_pos": 159 }, { "start_pos": 300, "end_pos": 302 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q8VYT5-1", "uniprot_ac": "Q8VYT5", "uniprot_id": "FB254_ARATH", "mass": { "chemical_mass": 52993.0, "monoisotopic_mass": 52993.0 }, "refseq": { "ac": "NP_196384", "name": "RNI-like superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196384" }, "gene_names": [ { "name": "MBK20.11", "type": "synonym", "evidence": [ { "id": "NP_196384", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196384" }, { "id": "Q8VYT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYT5" } ] }, { "name": "MBK20_11", "type": "synonym", "evidence": [ { "id": "NP_196384", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196384" } ] } ], "protein_names": [ { "name": "F-box protein At5g07670", "type": "recommended", "evidence": [ { "id": "Q8VYT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYT5/entry#names_and_taxonomy" } ] }, { "name": "RNI-like superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_196384", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196384" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT5", "url": "https://www.uniprot.org/uniprotkb/Q8VYT5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q8VYT5", "locus": {} } ], "crossref": [ { "id": "Q8VYT5", "url": "https://alphafold.ebi.ac.uk/entry/Q8VYT5", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G07670", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G07670", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "830660", "url": "https://www.ncbi.nlm.nih.gov/gene/830660", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057207", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057207", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G07670", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G07670", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FSDHRMD", "url": "https://omabrowser.org/oma/group/FSDHRMD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13318", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13318", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13318:SF124", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13318:SF124", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q8VYT5", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q8VYT5", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_196384", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196384", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G07670", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G07670", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q8VYT5", "url": "https://www.uniprot.org/uniprotkb/Q8VYT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8VYT5-1", "url": "https://www.uniprot.org/uniprotkb/Q8VYT5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSYNTGKESSPVSPLKKRRASWSELWVNHHHLLSSSPLDLAAKFQSLTPPISKSKTLLPDFTLLLPDLILIRVIQKIPNSQRKNLSLVCKRWFRLHGRLVRSFKVSDWEFLSSGRLISRFPNLETVDLVSGCLISPPNLGILVNHRIVSFTVGVGSYQSWSFFEENLLSVELVERGLKALAGGCSNLRKLVVTNTSELGLLNVAEECSRLQELELHKCSDSVLLGIGAFENLQILRLVGNVDGLYNSLVSDIGLMILAQGCKRLVKLELVGCEGGFDGIKEIGECCQMLEELTVCDNKMESGWLGGLRYCENLKTLKLVSCKKIDNDPDESLSCCCPALERLQLEKCQLRDKNTVKALFKMCEAAREIVFQDCWGLDNDIFSLAMAFGRVKLLYLEGCSLLTTSGLESVILHWHELEHLKVVSCKNIKDSEVSPSLSALFSALVELQWRPDTRSHLSSSLTGTGIGEKGGKFFKKT", "length": 476, "header": "sp|Q8VYT5-1|FB254_ARATH Isoform 1 of F-box protein At5g07670 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8VYT5-1" }, "isoforms": [ { "isoform_ac": "Q8VYT5-1", "url": "https://www.uniprot.org/uniprotkb/Q8VYT5/entry#Q8VYT5-1", "sequence": { "sequence": "MSYNTGKESSPVSPLKKRRASWSELWVNHHHLLSSSPLDLAAKFQSLTPPISKSKTLLPDFTLLLPDLILIRVIQKIPNSQRKNLSLVCKRWFRLHGRLVRSFKVSDWEFLSSGRLISRFPNLETVDLVSGCLISPPNLGILVNHRIVSFTVGVGSYQSWSFFEENLLSVELVERGLKALAGGCSNLRKLVVTNTSELGLLNVAEECSRLQELELHKCSDSVLLGIGAFENLQILRLVGNVDGLYNSLVSDIGLMILAQGCKRLVKLELVGCEGGFDGIKEIGECCQMLEELTVCDNKMESGWLGGLRYCENLKTLKLVSCKKIDNDPDESLSCCCPALERLQLEKCQLRDKNTVKALFKMCEAAREIVFQDCWGLDNDIFSLAMAFGRVKLLYLEGCSLLTTSGLESVILHWHELEHLKVVSCKNIKDSEVSPSLSALFSALVELQWRPDTRSHLSSSLTGTGIGEKGGKFFKKT", "length": 476, "header": "sp|Q8VYT5-1|FB254_ARATH Isoform 1 of F-box protein At5g07670 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8VYT5-1" }, "locus": { "chromosome": "5", "start_pos": 2430146, "end_pos": 2432231, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G07670.1", "url": "https://www.ensemblgenomes.org/id/AT5G07670.1" }, { "database": "Ensembl Peptide", "id": "AT5G07670.1", "url": "https://www.ensemblgenomes.org/id/AT5G07670.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 13, "end_pos": 13, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VYT5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser13" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT5", "url": "https://www.uniprot.org/uniprotkb/Q8VYT5" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8VYT5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT5", "url": "https://www.uniprot.org/uniprotkb/Q8VYT5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Sato S, Kaneko T, Kotani H, Nakamura Y, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT5", "url": "https://www.uniprot.org/uniprotkb/Q8VYT5" } ], "reference": [ { "type": "PubMed", "id": "9628582", "url": "https://glygen.org/publication/PubMed/9628582" } ] } ], "pathway": [ { "id": "ath:AT5G07670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G07670", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "SCF ubiquitin ligase complex", "id": "GO:0019005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019005", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT5", "url": "https://www.uniprot.org/uniprotkb/Q8VYT5" } ], "pmid": "" } ] }, { "name": "Biological Process", 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"MRHGRGSAVSAAISGLSPAKNSPFPQLCNVLLVASLSKTLSQSGTRSLDANSIPISEPVVLQILRRNSIDPSKKLDFFRWCYSLRPGYKHSATAYSQIFRTVCRTGLLGEVPDLLGSMKEDGVNLDQTMAKILLDSLIRSGKFESALGVLDYMEELGDCLNPSVYDSVLIALVKKHELRLALSILFKLLEASDNHSDDDTGRVIIVSYLPGTVAVNELLVGLRRADMRSEFKRVFEKLKGMKRFKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVYGSSFGPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKGQFVDAITFSIVGLQLCREGKLEGAVKLVEEMETRGFSVDLVTISSLLIGFHKQGRWDWKEKLMKHIREGNLVPNVLRWNAGVEASLKRPQSKDKDYTPMFPSKGSFLDIMSMVGSEDDGASAEEVSPMEDDPWSSSPYMDQLAHQRNQPKPLFGLARGQRVEAKPDSFDVDMMNTFLSIYLSKGDLSLACKLFEIFNGMGVTDLTSYTYNSMMSSFVKKGYFQTARGVLDQMFENFCAADIATYNVIIQGLGKMGRADLASAVLDRLTKQGGYLDIVMYNTLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEVNSKAGKLKEAYKYLKAMLDAGCLPNHVTDTILDYLGKEMEKARFKKASFVRNKPNNNNISS", "length": 805, "header": "sp|Q8VZE4-1|PP299_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q8VZE4-1" }, 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Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "Q8VZE4", "url": "https://www.uniprot.org/uniprotkb/Q8VZE4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q8VZE4", "url": "https://www.uniprot.org/uniprotkb/Q8VZE4" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.", "journal": "Plant Cell", "date": "2004", "authors": "Lurin Claire, Andr\u00e9s Charles, Aubourg S\u00e9bastien, Bellaoui Mohammed, Bitton Fr\u00e9d\u00e9rique, Bruy\u00e8re Cl\u00e9mence, Caboche Michel, Debast C\u00e9drig, Gualberto Jos\u00e9, Hoffmann Beate, Lecharny Alain, Le Ret Monique, Martin-Magniette Marie-Laure, Mireau Hakim, Peeters Nemo, Renou Jean-Pierre, Szurek Boris, Taconnat Ludivine, Small Ian", "evidence": [ { "database": "UniProtKB", "id": "Q8VZE4", "url": "https://www.uniprot.org/uniprotkb/Q8VZE4" } ], "reference": [ { "type": "PubMed", "id": "15269332", "url": "https://glygen.org/publication/PubMed/15269332" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": 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"MASSKGSQNHRNLGCNGKQALLPPKSPFTGGPTFSADFVPSSVIGSKAVQKLGEGNANHHRTSSESFLIEEQPSWLDDLLNEPETPVRKGGHRRSSSDSFAYVDVPVGFDVDYTLWDGGRYNNNNGFSNHVRGPKESDYLRSQPVPFYPSAHLSKQKIRPWDSLPDSGARPNSSSGCLESSSITRSGSSGSLRDTEKAYSAADSKKDFINNFAKSSFEKRDNPLAKSATSEADTKRARQQFAQRSRVRKIQYIAELERNVQMLQV", "length": 265, "header": "sp|Q8W3M7-1|Y4598_ARATH Isoform 1 of Uncharacterized protein At4g06598 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=2 CANONICAL=Q8W3M7-1" }, "isoforms": [ { "isoform_ac": "Q8W3M7-1", "url": "https://www.uniprot.org/uniprotkb/Q8W3M7/entry#Q8W3M7-1", "sequence": { "sequence": "MASSKGSQNHRNLGCNGKQALLPPKSPFTGGPTFSADFVPSSVIGSKAVQKLGEGNANHHRTSSESFLIEEQPSWLDDLLNEPETPVRKGGHRRSSSDSFAYVDVPVGFDVDYTLWDGGRYNNNNGFSNHVRGPKESDYLRSQPVPFYPSAHLSKQKIRPWDSLPDSGARPNSSSGCLESSSITRSGSSGSLRDTEKAYSAADSKKDFINNFAKSSFEKRDNPLAKSATSEADTKRARQQFAQRSRVRKIQYIAELERNVQMLQV", "length": 265, "header": "sp|Q8W3M7-1|Y4598_ARATH Isoform 1 of Uncharacterized protein At4g06598 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=2 CANONICAL=Q8W3M7-1" }, "locus": { "chromosome": "4", "start_pos": 3663328, "end_pos": 3664857, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G06598.1", "url": "https://www.ensemblgenomes.org/id/AT4G06598.1" }, { "database": "Ensembl Peptide", "id": "AT4G06598.1", "url": "https://www.ensemblgenomes.org/id/AT4G06598.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.", "journal": "DNA Res.", "date": "2001", "authors": "Kumekawa N, Hosouchi T, Tsuruoka H, Kotani H", "evidence": [ { "database": "UniProtKB", "id": "Q8W3M7", "url": "https://www.uniprot.org/uniprotkb/Q8W3M7" } ], "reference": [ { "type": "PubMed", "id": "11853315", "url": "https://glygen.org/publication/PubMed/11853315" } ] }, { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q8W3M7", "url": "https://www.uniprot.org/uniprotkb/Q8W3M7" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q8W3M7", "url": "https://www.uniprot.org/uniprotkb/Q8W3M7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G06598", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G06598", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "Q8W3M7", "url": "https://www.uniprot.org/uniprotkb/Q8W3M7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q8W3M7", "url": "https://www.uniprot.org/uniprotkb/Q8W3M7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q8W3M7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 265, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q8W3M7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q8W3M7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 172, "end_pos": 174 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q8W570-1", "uniprot_ac": "Q8W570", "uniprot_id": "UFD1C_ARATH", "mass": { "chemical_mass": 34582.0, "monoisotopic_mass": 34582.0 }, "refseq": { "ac": "NP_001328898", "name": "Ubiquitin fusion degradation UFD1 family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001328898" }, "gene_names": [ { "name": "UFD1C", "type": "recommended", "evidence": [ { "id": "Q8W570", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W570" } ] }, { "name": "F19H22.30", "type": "synonym", "evidence": [ { "id": "NP_001328898", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001328898" }, { "id": "Q8W570", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W570" } ] }, { "name": "F19H22_30", "type": "synonym", "evidence": [ { "id": "NP_001328898", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001328898" } ] } ], "protein_names": [ { "name": "Ubiquitin fusion degradation protein 1 C", "type": "recommended", "evidence": [ { "id": "Q8W570", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W570/entry#names_and_taxonomy" } ] }, { "name": "UB fusion protein 1 C", "type": "synonym", "evidence": [ { "id": "Q8W570", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W570/entry#names_and_taxonomy" } ] }, { "name": "Ubiquitin fusion degradation UFD1 family protein", "type": "synonym", "evidence": [ { "id": "NP_001328898", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001328898" } ] } ], "function": [ { "annotation": "Essential component of the ubiquitin-dependent proteolytic pathway which degrades ubiquitin fusion proteins (By similarity). Functions at a post-ubiquitation step in the ubiquitin fusion degradation (UFD) pathway (By similarity). CDC48 complex component required for plant tolerance to reactive oxygen species (ROS) by modulating ubiquitin-dependent degradation, by the 26S proteasome, of intra-chloroplast proteins (e.g. RbcL and AtpB) in response to oxidative stress (PubMed:35417702).", "evidence": [ { "database": "UniProtKB", "id": "Q8W570", "url": "https://www.uniprot.org/uniprotkb/Q8W570#function" }, { "database": "UniProtKB", "id": "Q9ES53", "url": "https://www.uniprot.org/uniprotkb/Q9ES53#function" }, { "database": "PubMed", "id": "35417702", "url": "https://glygen.org/publication/PubMed/35417702" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W570", "url": "https://www.uniprot.org/uniprotkb/Q8W570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "UFD1C", "url": "https://www.uniprot.org/uniprotkb/Q8W570", "locus": {} } ], "crossref": [ { "id": "Q8W570", "url": "https://alphafold.ebi.ac.uk/entry/Q8W570", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G38930", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G38930", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "830048", "url": "https://www.ncbi.nlm.nih.gov/gene/830048", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q8W570", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q8W570*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR004854", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004854", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055418", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055418", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G38930", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G38930", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YKEHSEQ", "url": "https://omabrowser.org/oma/group/YKEHSEQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q8W570", "url": "https://www.orthodb.org/?gene=Q8W570", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12555", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12555", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12555:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12555:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03152", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03152", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24842", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24842", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001328898", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001328898", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G38930", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G38930", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q8W570", "url": "https://www.uniprot.org/uniprotkb/Q8W570", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8W570-1", "url": "https://www.uniprot.org/uniprotkb/Q8W570-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8W570-2", "url": "https://www.uniprot.org/uniprotkb/Q8W570-2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFYDGYAYHGTTFEQTYRCYPSSFIDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELRNASTDSFSHCGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRVRNVTLPKGTYVKLQPHTTDFLDIANPKAILETALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVDFAPPLDYKEPERPVAPAPAKAKEVDVAEAEPKFNPFTGSGRRLDGRPLSYEPQPGAANSNGQSHPVASSSSSGSEKATQQNRGKLVFGSNVERSTKETTKVGAGKDRKQEEEAEKEAKFQAFSGKKYSLRG", "length": 311, "header": "sp|Q8W570-1|UFD1C_ARATH Isoform 1 of Ubiquitin fusion degradation protein 1 C OS=Arabidopsis thaliana OX=3702 GN=UFD1C PE=1 SV=1 CANONICAL=Q8W570-1" }, "isoforms": [ { "isoform_ac": "Q8W570-1", "url": "https://www.uniprot.org/uniprotkb/Q8W570/entry#Q8W570-1", "sequence": { "sequence": "MFYDGYAYHGTTFEQTYRCYPSSFIDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELRNASTDSFSHCGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRVRNVTLPKGTYVKLQPHTTDFLDIANPKAILETALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVDFAPPLDYKEPERPVAPAPAKAKEVDVAEAEPKFNPFTGSGRRLDGRPLSYEPQPGAANSNGQSHPVASSSSSGSEKATQQNRGKLVFGSNVERSTKETTKVGAGKDRKQEEEAEKEAKFQAFSGKKYSLRG", "length": 311, "header": "sp|Q8W570-1|UFD1C_ARATH Isoform 1 of Ubiquitin fusion degradation protein 1 C OS=Arabidopsis thaliana OX=3702 GN=UFD1C PE=1 SV=1 CANONICAL=Q8W570-1" }, "locus": { "chromosome": "4", "start_pos": 18149533, "end_pos": 18151793, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G38930.1", "url": "https://www.ensemblgenomes.org/id/AT4G38930.1" }, { "database": "Ensembl Peptide", "id": "AT4G38930.1", "url": "https://www.ensemblgenomes.org/id/AT4G38930.1" } ] } }, { "isoform_ac": "Q8W570-2", "url": "https://www.uniprot.org/uniprotkb/Q8W570/entry#Q8W570-2", "sequence": { "sequence": "MFYDGYAYHGTTFEQTYRCYPSSFIDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELRNASTDSFSHCGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRVRNVTLPKGTYVKLQPHTTDFLDIANPKAILETALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVDFAPPLDYKEPERPVAPAPAKGEAKAKEVDVAEAEPKFNPFTGSGRRLDGRPLSYEPQPGAANSNGQSHPVASSSSSGSEKATQQNRGKLVFGSNVERSTKETTKVGAGKDRKQEEEAEKEAKFQAFSGKKYSLRG", "length": 315, "header": "sp|Q8W570-2|UFD1C_ARATH Isoform 2 of Ubiquitin fusion degradation protein 1 C OS=Arabidopsis thaliana OX=3702 GN=UFD1C PE=1 SV=1 CANONICAL=Q8W570-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 11, "end_pos": 11, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8W570", "url": "https://www.uniprot.org/uniprotkb/Q8W570" } ], "site_lbl": "Thr11" }, { "start_pos": 12, "end_pos": 12, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { 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"categories": [ "Protein" ] }, { "id": "Q94B46-1", "url": "https://www.uniprot.org/uniprotkb/Q94B46-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLSGCRDIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDESVYLNPENETEVSSSFMDFVDRVLALQGNSPLHKFSLKIGDGVEPDRIIPWINNVLERGVSDLDLHVYMETEFVFPSEMFLSKTLVRLKLMLYPLLEFEDVYLPKLKTLYIDSCYFEKYGIGLTKLLSGCPILEDLVLDDIPWCTWDFASVSVPTLKRLTFSTQVRDEFPKSVSIDTPNLVYLKFTDTVAGKYPKVNFDSLVEAHIDLRLLQGHQGYGENDMVGNATDFIMRICNVKTLYLSSNTLQVLTYSCDAIPIFNNLTHLTIESNPEVGWQSLPGLLKNSPNLETLIFQGLIHKATDKCGDVCLCKPREEIRSCLASSPVKVIKILKFGEISDDMEKQREQIKYFLETMPNLEKMILYYNTTSVEDVTEVSSRLQRLVSKLASSTCIVQLISDNLSLSSTVSTNGLLCF", "length": 468, "header": "sp|Q94B46-1|FBL74_ARATH Isoform 1 of F-box/LRR-repeat protein At4g14096 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q94B46-1" }, "isoforms": [ { "isoform_ac": "Q94B46-1", "url": "https://www.uniprot.org/uniprotkb/Q94B46/entry#Q94B46-1", "sequence": { "sequence": 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Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "Q94B46", "url": "https://www.uniprot.org/uniprotkb/Q94B46" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q94B46", "url": "https://www.uniprot.org/uniprotkb/Q94B46" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q94B46", "url": "https://www.uniprot.org/uniprotkb/Q94B46" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Analysis of 1.9 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"reference": [ { "type": "PubMed", "id": "9461215", "url": "https://glygen.org/publication/PubMed/9461215" } ] } ], "pathway": [ { "id": "ath:AT4G14096", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G14096", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 419, "end_pos": 421, "annotation": "n_glycosylation_sequon" }, { "start_pos": 453, "end_pos": 455, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q94B46-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 468, "overlap": "1.0", "method": 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"database": "Ensembl Peptide", "id": "AT5G12450.1", "url": "https://www.ensemblgenomes.org/id/AT5G12450.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, 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"url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94CK1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q94CK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94CK1" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q94CK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94CK1" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q94CK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94CK1" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q94CK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94CK1" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler 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Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q94HW6", "url": "https://www.uniprot.org/uniprotkb/Q94HW6" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, 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"title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta 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"F15D2.25", "type": "synonym", "evidence": [ { "id": "NP_001320906", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001320906" }, { "id": "Q9C535", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C535" } ] } ], "protein_names": [ { "name": "Metallo-hydrolase/oxidoreductase superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_001320906", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001320906" }, { "id": "Q9C535", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C535/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C535", "url": "https://www.uniprot.org/uniprotkb/Q9C535" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C535", "locus": {} } ], "crossref": [ { "id": "839847", "url": "https://www.ncbi.nlm.nih.gov/gene/839847", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036866", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036866", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G29700", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G29700", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YYEPHGY", "url": "https://omabrowser.org/oma/group/YYEPHGY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9C535", "url": "https://www.orthodb.org/?gene=Q9C535", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36142", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36142", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36142:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36142:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13483", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13483", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001320906", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001320906", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G29700", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G29700", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C535", "url": "https://www.uniprot.org/uniprotkb/Q9C535", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C535-1", "url": "https://www.uniprot.org/uniprotkb/Q9C535-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALVVSGGKAAMMPLHANSLPLSINTKSRVLSASAFPLFSSTPHLPSRSLSIRLSPNVSRSLTVVSSVLSEDRATNVSGSGTDAFKLTYLEGNSWLWETAGLKILVDPILVGNLDFGIPWLYDAAKRYLKAFKLDDLPEVDCLLITQSLDDHCHLNTLRPLSEKSPGIKVIATPNAKPLLDPLFSNVTYLEPGDSFELNARNGSKVRVKATAGPVLGPPWQRPENGYLLVSPEDQISLYYEPHCVCNMELLKNERADIVITPVIKQLLPRFTLVSGQEDAVQLAKLLKAKFVVPMQNGELEAKGLLASLVKKEGTIESFKELLLKELPEAQVLEPIAGIPLEILVPSSDI", "length": 350, "header": "tr|Q9C535-1|Q9C535_ARATH Isoform 1 of Metallo-hydrolase/oxidoreductase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C535-1" }, "isoforms": [ { "isoform_ac": "Q9C535-1", "url": "https://www.uniprot.org/uniprotkb/Q9C535/entry", "sequence": { "sequence": "MALVVSGGKAAMMPLHANSLPLSINTKSRVLSASAFPLFSSTPHLPSRSLSIRLSPNVSRSLTVVSSVLSEDRATNVSGSGTDAFKLTYLEGNSWLWETAGLKILVDPILVGNLDFGIPWLYDAAKRYLKAFKLDDLPEVDCLLITQSLDDHCHLNTLRPLSEKSPGIKVIATPNAKPLLDPLFSNVTYLEPGDSFELNARNGSKVRVKATAGPVLGPPWQRPENGYLLVSPEDQISLYYEPHCVCNMELLKNERADIVITPVIKQLLPRFTLVSGQEDAVQLAKLLKAKFVVPMQNGELEAKGLLASLVKKEGTIESFKELLLKELPEAQVLEPIAGIPLEILVPSSDI", "length": 350, "header": "tr|Q9C535-1|Q9C535_ARATH Isoform 1 of Metallo-hydrolase/oxidoreductase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C535-1" }, "locus": { "chromosome": "1", "start_pos": 10384945, "end_pos": 10387441, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G29700.1", "url": "https://www.ensemblgenomes.org/id/AT1G29700.1" }, { "database": "Ensembl Peptide", "id": "AT1G29700.1", "url": "https://www.ensemblgenomes.org/id/AT1G29700.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C535", "url": "https://www.uniprot.org/uniprotkb/Q9C535" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C535", "url": "https://www.uniprot.org/uniprotkb/Q9C535" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G29700", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G29700", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9C535", "url": "https://www.uniprot.org/uniprotkb/Q9C535" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9C535", "url": "https://www.uniprot.org/uniprotkb/Q9C535" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" }, { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C538-1", "uniprot_ac": "Q9C538", "uniprot_id": "Q9C538_ARATH", "mass": { "chemical_mass": 102698.0, "monoisotopic_mass": 102698.0 }, "refseq": { "ac": "NP_175412", "name": "C2H2 type zinc finger transcription factor family", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175412" }, "gene_names": [ { "name": "T18C15.3", "type": "synonym", "evidence": [ { "id": "NP_175412", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175412" }, { "id": "Q9C538", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C538" } ] } ], "protein_names": [ { "name": "C2H2 type zinc finger transcription factor family", "type": "synonym", "evidence": [ { "id": "NP_175412", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175412" }, { "id": "Q9C538", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C538/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C538", "url": "https://www.uniprot.org/uniprotkb/Q9C538" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C538", "locus": {} } ], "crossref": [ { "id": "AT1G49900", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G49900", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "841413", "url": "https://www.ncbi.nlm.nih.gov/gene/841413", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G49900", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G49900", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PNQQRFG", "url": "https://omabrowser.org/oma/group/PNQQRFG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45988", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45988", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45988:SF92", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45988:SF92", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_175412", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175412", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G49900", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G49900", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C538", "url": "https://www.uniprot.org/uniprotkb/Q9C538", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C538-1", "url": "https://www.uniprot.org/uniprotkb/Q9C538-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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OX=3702 GN= PE=3 SV=1 CANONICAL=Q9C545-1" }, "locus": { "chromosome": "1", "start_pos": 16153609, "end_pos": 16154468, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G43010.1", "url": "https://www.ensemblgenomes.org/id/AT1G43010.1" }, { "database": "Ensembl Peptide", "id": "AT1G43010.1", "url": "https://www.ensemblgenomes.org/id/AT1G43010.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 157, "end_pos": 157, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C545" } ], "site_lbl": "Thr157" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G31490", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C564", "url": "https://www.uniprot.org/uniprotkb/Q9C564", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C564-1", "url": "https://www.uniprot.org/uniprotkb/Q9C564-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKIFDVSFTGEFIVKASGDQPEKVNSLNLSNFDLLSGRFPVTYFYFYPKQPQLSFETIVKSLQSSLSQTLSYFYPFAGQIVPNETSQEEPMIICNNNGALFVEARAHVDLKSLDFYNLDAFLQSKLVQVNPDFSLQIQATEFECGGLALTFTFDHALGDASSFGKFLTLWSEISRNKPVSCVPDHRRNLLRARSPPRYDPHLDKTFIKCSEEDIKNIPMSKTLIKRLYHIGASSLDALQALATVNGESRTKIEAFSAYVWKKMVDSIESGHKTCKMGWLVDGRGRLETVTSSYIGNVLSIAVGEASIENLKKNHVSDIANIVHKSITEVTNDTHFTDLIDWIESHRPGLMLARVVLGQEGPALVLSSGRRFPVAELDFGFGAPFLGTVCSTVEKIGVGYLNQRPSACNDGSWSVSAIVWPELATALESDSVFQPMSAKHLQLQT", "length": 444, "header": "tr|Q9C564-1|Q9C564_ARATH Isoform 1 of HXXXD-type acyl-transferase family protein OS=Arabidopsis 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Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C564", "url": "https://www.uniprot.org/uniprotkb/Q9C564" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C564", "url": "https://www.uniprot.org/uniprotkb/Q9C564" } ], "reference": [ { "type": "PubMed", "id": "27862469", 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"METSSAIPPPPPRVGWWSRPIVTVPLSNDREPTCKETTVCLTPCCAGLFTIVAVYLLIFHVVNNAHCHAKFSIQSIAVSPSSATWHVDFLVKNPSSRYSIYYGPDETAVSLGPVNAAVLDTFHERKSRSHTAFSVDFIAEGNPNGVVFKELYVKLKTKHKIYGNVFGYAGHIDIRCQNLTRSYENVEKIHCYSSYTDMKALTGNSVSVSNANVSTADWTIGFVAKSPNTGCKISLHPLNARLLRGGEVISKSASYSSDYFVSGRDKPDVLFEKVVKPEVIGDVIWHLRVEVLFAMDTDVSCFNGFLIAVCPDIAVKFTTDPAGKGMGSLLGHMRWCDYEFREKLDSSHSIFSS", "length": 353, "header": "tr|Q9C572-1|Q9C572_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C572-1" }, "isoforms": [ { "isoform_ac": "Q9C572-1", "url": "https://www.uniprot.org/uniprotkb/Q9C572/entry", "sequence": { "sequence": "METSSAIPPPPPRVGWWSRPIVTVPLSNDREPTCKETTVCLTPCCAGLFTIVAVYLLIFHVVNNAHCHAKFSIQSIAVSPSSATWHVDFLVKNPSSRYSIYYGPDETAVSLGPVNAAVLDTFHERKSRSHTAFSVDFIAEGNPNGVVFKELYVKLKTKHKIYGNVFGYAGHIDIRCQNLTRSYENVEKIHCYSSYTDMKALTGNSVSVSNANVSTADWTIGFVAKSPNTGCKISLHPLNARLLRGGEVISKSASYSSDYFVSGRDKPDVLFEKVVKPEVIGDVIWHLRVEVLFAMDTDVSCFNGFLIAVCPDIAVKFTTDPAGKGMGSLLGHMRWCDYEFREKLDSSHSIFSS", "length": 353, "header": "tr|Q9C572-1|Q9C572_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C572-1" }, "locus": { "chromosome": "5", "start_pos": 7346944, "end_pos": 7349255, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22160.1", "url": "https://www.ensemblgenomes.org/id/AT5G22160.1" }, { "database": "Ensembl Peptide", "id": "AT5G22160.1", "url": "https://www.ensemblgenomes.org/id/AT5G22160.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9C572", "url": "https://www.uniprot.org/uniprotkb/Q9C572" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C572", "url": "https://www.uniprot.org/uniprotkb/Q9C572" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G22160", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22160", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "defense response to other organism", "id": "GO:0098542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098542", "evidence": [ { "database": "UniProtKB", "id": "Q9C572", "url": "https://www.uniprot.org/uniprotkb/Q9C572" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9C572", "url": "https://www.uniprot.org/uniprotkb/Q9C572" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "Q9C572", "url": "https://www.uniprot.org/uniprotkb/Q9C572" } ], "pmid": "" }, { "name": "plasmodesma", "id": "GO:0009506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009506", "evidence": [ { "database": "UniProtKB", "id": "Q9C572", "url": "https://www.uniprot.org/uniprotkb/Q9C572" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 178, "end_pos": 180 }, { "start_pos": 212, "end_pos": 214 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"yes" } }, { "uniprot_canonical_ac": "Q9C576-1", "uniprot_ac": "Q9C576", "uniprot_id": "Q9C576_ARATH", "mass": { "chemical_mass": 42092.0, "monoisotopic_mass": 42092.0 }, "refseq": { "ac": "NP_680198", "name": "coiled-coil protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680198" }, "gene_names": [], "protein_names": [ { "name": "Coiled-coil protein", "type": "synonym", "evidence": [ { "id": "Q9C576", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C576/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil protein", "type": "synonym", "evidence": [ { "id": "NP_680198", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680198" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C576", "url": "https://www.uniprot.org/uniprotkb/Q9C576" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C576", "locus": {} } ], "crossref": [ { "id": "832273", "url": "https://www.ncbi.nlm.nih.gov/gene/832273", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9C576", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9C576*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G22120", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22120", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NYGTRHV", "url": "https://omabrowser.org/oma/group/NYGTRHV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21678", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21678", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21678:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21678:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_680198", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680198", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G22120", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G22120", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C576", "url": "https://www.uniprot.org/uniprotkb/Q9C576", "database": 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"MGGLRCWLQFYRNGNAHNVFAIMPERNVLYGESSFRRVWVRFMTSSKRVQDRSREKRVQELEIATEKWKIASKVIFLMEVLKGERDMIMTVRSFEQYRRQINLPKPHKISDFIRKSPKLFELYKDQRGVLWCGLTEGGEDLLDEHDKLLEENGDKAAEHVTRCLMMSVDKKLPLDKIVHFRRDFGLPLDFRINWVYNFPQHFKVVKLGDGEEYLELVSWNPAWAITELEKKTLGITEDCEHKPGMLSLAFPMKFPPSYKKMYRYRGKIEHFQKRSYLSPYADARGLEAGSKEFDKRAIAVMHELLSFTLEKRLVTDHLTHFRREFVMPQKLMRIFLKHCGIFYVSERGKRFSVFLTEGYEGPELIEKCPLILWKEKLLKFTGYRGRKRDIQTYSDTLDMEERELLESGSGDEDLSVGFEKDGDYDDVVTDDDEMDIGEVNDAYEENSKV", "length": 449, "header": "tr|Q9C590-1|Q9C590_ARATH Isoform 1 of Ubiquitin carboxyl-terminal hydrolase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C590-1" }, "isoforms": [ { "isoform_ac": "Q9C590-1", "url": "https://www.uniprot.org/uniprotkb/Q9C590/entry", "sequence": { "sequence": "MGGLRCWLQFYRNGNAHNVFAIMPERNVLYGESSFRRVWVRFMTSSKRVQDRSREKRVQELEIATEKWKIASKVIFLMEVLKGERDMIMTVRSFEQYRRQINLPKPHKISDFIRKSPKLFELYKDQRGVLWCGLTEGGEDLLDEHDKLLEENGDKAAEHVTRCLMMSVDKKLPLDKIVHFRRDFGLPLDFRINWVYNFPQHFKVVKLGDGEEYLELVSWNPAWAITELEKKTLGITEDCEHKPGMLSLAFPMKFPPSYKKMYRYRGKIEHFQKRSYLSPYADARGLEAGSKEFDKRAIAVMHELLSFTLEKRLVTDHLTHFRREFVMPQKLMRIFLKHCGIFYVSERGKRFSVFLTEGYEGPELIEKCPLILWKEKLLKFTGYRGRKRDIQTYSDTLDMEERELLESGSGDEDLSVGFEKDGDYDDVVTDDDEMDIGEVNDAYEENSKV", "length": 449, "header": "tr|Q9C590-1|Q9C590_ARATH Isoform 1 of Ubiquitin carboxyl-terminal hydrolase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C590-1" }, "locus": { "chromosome": "5", "start_pos": 7261523, "end_pos": 7263644, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G21970.2", "url": "https://www.ensemblgenomes.org/id/AT5G21970.2" }, { "database": "Ensembl Peptide", "id": "AT5G21970.2", "url": "https://www.ensemblgenomes.org/id/AT5G21970.2" } ] } } ], "glycosylation": [], 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S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9C590", "url": "https://www.uniprot.org/uniprotkb/Q9C590" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9C590", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C590" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9C590", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C590" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C590", "url": "https://www.uniprot.org/uniprotkb/Q9C590" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9C590", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C590" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT5G21970", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G21970", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular 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"kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C5T6-1", "uniprot_ac": "Q9C5T6", "uniprot_id": "Q9C5T6_ARATH", "mass": { "chemical_mass": 50084.0, "monoisotopic_mass": 50084.0 }, "refseq": { "ac": "NP_187568", "name": "Lung seven transmembrane receptor family protein", "summary": "", "url": 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"glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "CWC16A", "url": "https://www.uniprot.org/uniprotkb/Q9C609", "locus": {} } ], "crossref": [ { "id": "839146", "url": "https://www.ncbi.nlm.nih.gov/gene/839146", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007590", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007590", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G25682", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G25682", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RNMSVWD", "url": "https://omabrowser.org/oma/group/RNMSVWD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9C609", "url": "https://www.orthodb.org/?gene=Q9C609", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12111", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12111", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12111:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12111:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04502", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04502", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001322477", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001322477", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G25682", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G25682", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C609", "url": "https://www.uniprot.org/uniprotkb/Q9C609", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C609-1", "url": "https://www.uniprot.org/uniprotkb/Q9C609-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTLSAARADNFYYPPEWTPDQGSLNKFQGQHPLRERAKKIGEGILVIRFEMPYNIWCGGCSSMIAKGVRFNAEKKQVGNYYSTKIWSFAMKSPCCKHEIVIQTDPQNCEYVITSGAQKKVEEYEAEDAETMELTAEQEKGKLADPFYRLEHQEVDLQKKKAAEPLLVRLQRVSDARHADDYSLNKALRAQLRRHRKRVAEEETASRKLGLGIRLLPKSEEDIKAASNVKFKSKFDKNRKDKRALIHASSIFPESSYSSSKKRMELEAKRRKISAASASSLLRGGFKASSLSTNPSASKPKVSSVSVRKL", "length": 310, "header": "tr|Q9C609-1|Q9C609_ARATH Isoform 1 of Coiled-coil protein (DUF572) OS=Arabidopsis thaliana OX=3702 GN=CWC16A PE=1 SV=1 CANONICAL=Q9C609-1" }, "isoforms": [ { "isoform_ac": "Q9C609-1", "url": "https://www.uniprot.org/uniprotkb/Q9C609/entry", "sequence": { "sequence": "MSTLSAARADNFYYPPEWTPDQGSLNKFQGQHPLRERAKKIGEGILVIRFEMPYNIWCGGCSSMIAKGVRFNAEKKQVGNYYSTKIWSFAMKSPCCKHEIVIQTDPQNCEYVITSGAQKKVEEYEAEDAETMELTAEQEKGKLADPFYRLEHQEVDLQKKKAAEPLLVRLQRVSDARHADDYSLNKALRAQLRRHRKRVAEEETASRKLGLGIRLLPKSEEDIKAASNVKFKSKFDKNRKDKRALIHASSIFPESSYSSSKKRMELEAKRRKISAASASSLLRGGFKASSLSTNPSASKPKVSSVSVRKL", "length": 310, "header": "tr|Q9C609-1|Q9C609_ARATH Isoform 1 of Coiled-coil protein (DUF572) OS=Arabidopsis thaliana OX=3702 GN=CWC16A PE=1 SV=1 CANONICAL=Q9C609-1" }, "locus": { "chromosome": "1", "start_pos": 9002285, "end_pos": 9004762, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G25682.2", "url": "https://www.ensemblgenomes.org/id/AT1G25682.2" }, { "database": "Ensembl Peptide", "id": "AT1G25682.2", "url": "https://www.ensemblgenomes.org/id/AT1G25682.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C609", "url": "https://www.uniprot.org/uniprotkb/Q9C609" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C609", "url": "https://www.uniprot.org/uniprotkb/Q9C609" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G25682", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G25682", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P13994-1", "protein_name": "Probable splicing factor YJU2B", "gene_name": "YJU2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGERKGVNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMADNEQVLTTEHEKKQKLETDAMFRLEHGEADRSTLKKALPTLSHIQEAQSAWKDDFALNSMLRRRFREKKKAIQEEEERDQALQAKASLTIPLVPETEDDRKLAALLKFHTLDSYEDKQKLKRTEIISRSWFPSAPGSASSSKVSGVLKKLAQSRRTALATSPITVGDLGIVRRRSRDVPESPQHAADTPKSGEPRVPEEAAQDRPMSPGDCPPETTETPKCSSPRGQEGSRQDKPLSPAGSSQEAADTPDTRHPCSLGSSLVADYSDSESE", "length": 396 }, "evidence": [ { "id": "Q9C609", "url": "https://omabrowser.org/oma/group/Q9C609/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54TR4-1", "protein_name": "Coiled-coil domain-containing protein 130 homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": 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"Q9C626", "url": "https://www.uniprot.org/uniprotkb/Q9C626" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G47056", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G47056", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PKG8-1", "protein_name": "F-box/LRR-repeat protein 7", "gene_name": "FBXL7", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": 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"MGANNGKQYGSEGKGSSSISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALICPPTLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVIVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCTSIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRITDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLESLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQMLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF", "length": 491 }, "evidence": [ { "id": "Q9C626", "url": "https://omabrowser.org/oma/group/Q9C626/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A1A5X2-1", "protein_name": "F-box/LRR-repeat protein 7", "gene_name": "fbxl7", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGANNGKQSGSEGKGSSSISSDLSSSTDQTSTKAPKNAATSEDSDLSMRTVSTPSPALILPPRSSSAVLNGSSTSSSTFGTETIAMVHMPPTSLTHPQRCLRQPRDQQGAPVDILPDHAFLQIFTHLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGDVLHVDRALRVLTRRLCQDTPNVCLTVETVMVSGCRRLTDRGLYTVAQSCPELRRLEVAGCYNVSNEAVFEVVSRCPNLEHLDVSGCSKVTCISLTRDVSVKLSPLHGQQISIRFLDMTDCFALEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRFLVIYCPGVRELSVSDCRFISDFGLREIAKLEGRLRYLSIAHCSRITDVGVRYVAKYCSRLRYLNARGCEGLTDHGIEHLAKSCLKLKSLDIGKCPLVSDAGLEQLALNSFNLKRLSLKSCESITGRGLQVVAANCFDLQLLNVQDCDVSLEALRFVKRHCKRCIIEHTNPAFF", "length": 489 }, "evidence": [ { "id": "Q9C626", "url": "https://omabrowser.org/oma/group/Q9C626/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1M6W6-1", "protein_name": "F-box/LRR-repeat protein 7", "gene_name": "Fbxl7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"MGANNGKQYGSEGKGSSSVSSDVSSSTDHTPTKAQRNVATSEDSDLSMRTLSTPSPALICPPTLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVIVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCTSIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRITDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLESLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQMLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF", "length": 491 }, "evidence": [ { "id": "Q9C626", "url": "https://omabrowser.org/oma/group/Q9C626/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UJT9-1", "protein_name": "F-box/LRR-repeat protein 7", "gene_name": "FBXL7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9C626-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 518, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9C626-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9C626" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9C626", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C626" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 37, "end_pos": 82, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 489, "end_pos": 491 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C627", "url": "https://www.uniprot.org/uniprotkb/Q9C627" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C627", "locus": {} } ], "crossref": [ { "id": "Q9C627", "url": "https://alphafold.ebi.ac.uk/entry/Q9C627", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G46984", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G46984", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd22157", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22157", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "841120", "url": "https://www.ncbi.nlm.nih.gov/gene/841120", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G46984", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G46984", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AFWIMRS", "url": "https://omabrowser.org/oma/group/AFWIMRS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31111", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31111", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31111:SF114", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31111:SF114", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08268", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08268", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9C627", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9C627", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT1G46984", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G46984", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C627", "url": 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"https://www.genome.jp/dbget-bin/www_bget?ath:AT1G58120", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WWELMNA", "url": "https://omabrowser.org/oma/group/WWELMNA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33597", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33597", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33597:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33597:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25276", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25276", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_176109", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176109", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G58120", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G58120", 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"MKPPPYFSVSEPQCRLSDPAQPHKLCRRRRRSHGPLSICFSCKGKHLEGRKYYYYCATCKLEFHRGCHLLPPVIRHPFHPSHLLTLISLPPGFDISKIPRNTDDGSAASERSINETDDDDDSEDGGHDDEDNNFVDDDVIVNDGDGVGEDRDGDSDGDGDGGDDDDDDDFQQDIYYRVNGYDYYYNNYDDGDNAAYASISDGNDHRKCKCCQDPLKKVHYHCSICKFNLNLSCSMRPPPPTISHLKSHEHTLTLFPIRLPSPCDACGLSLSDTIDLIYACLPCSHMIHRSCIYLPRVIQITRHPHRLSLTSSLQVGDFSCGVCRQTVDINYGHYSCNKGCNYAVHSKCATREDVWDGKDLEGVPEKPDEDIEPFVRIDEETIQHFSHHEHYMKLHEKETISEKDKFCEACTLPVMISQRYYGCTECDFVLDEACASLPRKIYNPLHKHPLTLQPFPIDETSNIADNISTKGIFECDGCHRLGCGFVYRCSKRKCVFRLDVRCASLPDPFIHDCHPHDLFFNSTKGNCIGCGSDECSSYFLECIKCNSFLGIRCASLPFEAHYKHDRHPLILCRDEDTSSGLYWCEICESELDPKTWFYTCDFCTITLHVNCLLGKDMYMKPQYIFKIGYRHRKVEIARNDGNSRLFCTRCKRHCMQNLIYKRIGRDQSYCTLKCFGARLMLELF", "length": 684, "header": "tr|Q9C6G8-1|Q9C6G8_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C6G8-1" }, "isoforms": [ { "isoform_ac": "Q9C6G8-1", "url": "https://www.uniprot.org/uniprotkb/Q9C6G8/entry", "sequence": { "sequence": "MKPPPYFSVSEPQCRLSDPAQPHKLCRRRRRSHGPLSICFSCKGKHLEGRKYYYYCATCKLEFHRGCHLLPPVIRHPFHPSHLLTLISLPPGFDISKIPRNTDDGSAASERSINETDDDDDSEDGGHDDEDNNFVDDDVIVNDGDGVGEDRDGDSDGDGDGGDDDDDDDFQQDIYYRVNGYDYYYNNYDDGDNAAYASISDGNDHRKCKCCQDPLKKVHYHCSICKFNLNLSCSMRPPPPTISHLKSHEHTLTLFPIRLPSPCDACGLSLSDTIDLIYACLPCSHMIHRSCIYLPRVIQITRHPHRLSLTSSLQVGDFSCGVCRQTVDINYGHYSCNKGCNYAVHSKCATREDVWDGKDLEGVPEKPDEDIEPFVRIDEETIQHFSHHEHYMKLHEKETISEKDKFCEACTLPVMISQRYYGCTECDFVLDEACASLPRKIYNPLHKHPLTLQPFPIDETSNIADNISTKGIFECDGCHRLGCGFVYRCSKRKCVFRLDVRCASLPDPFIHDCHPHDLFFNSTKGNCIGCGSDECSSYFLECIKCNSFLGIRCASLPFEAHYKHDRHPLILCRDEDTSSGLYWCEICESELDPKTWFYTCDFCTITLHVNCLLGKDMYMKPQYIFKIGYRHRKVEIARNDGNSRLFCTRCKRHCMQNLIYKRIGRDQSYCTLKCFGARLMLELF", "length": 684, "header": "tr|Q9C6G8-1|Q9C6G8_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C6G8-1" }, "locus": { "chromosome": "1", "start_pos": 20680876, "end_pos": 20683143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G55390.1", "url": "https://www.ensemblgenomes.org/id/AT1G55390.1" }, { "database": "Ensembl Peptide", "id": "AT1G55390.1", "url": "https://www.ensemblgenomes.org/id/AT1G55390.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 241, "start_aa": "Thr", "end_pos": 241, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr241", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant 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J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C6G8", "url": "https://www.uniprot.org/uniprotkb/Q9C6G8" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C6G8", "url": "https://www.uniprot.org/uniprotkb/Q9C6G8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G55390", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G55390", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF08268", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9C6J3", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9C6J3", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT1G50870", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G50870", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C6J3", "url": "https://www.uniprot.org/uniprotkb/Q9C6J3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C6J3-1", "url": "https://www.uniprot.org/uniprotkb/Q9C6J3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQREENTERIHRERRKRQSSSIPKTTTLLCPLDLILEILLRLPVKSVLRFRCVSKLWLSTTTDPYFTNSYEARSSTRPSLLMFFKNKDKLFVFTFPHHNQNSKETHSYSQHVDSYHIKYPKYCCFPFTESVHGLISFRISTKPIIWNPTMRQFLILPKPEKSWKGLSVFLGYDPVEGKHKLMCMNRDNTSDECRVLTLGSAQEKWRRIKSNLKHRSILRYYGQCINGVIYYQAYIDQMGFISNPTIMSFEVRSEKFDTITLPSGSFANMLIPYQGRLACVNNTMDDVNGGITLWTLEDAEKHIWSCKLFLAPLAHYDRSLKTDFKLDGITHAGEFIYVLSTFLKSFYVLYFDPKKNSFRKVEFRGTAYEVFRLSHGLGNKKVNRLYTFSHHVTSF", "length": 396, "header": "sp|Q9C6J3-1|FB52_ARATH Isoform 1 of Putative F-box protein At1g50870 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C6J3-1" }, "isoforms": [ { "isoform_ac": "Q9C6J3-1", "url": "https://www.uniprot.org/uniprotkb/Q9C6J3/entry#Q9C6J3-1", "sequence": { "sequence": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C6J6-1", "uniprot_ac": "Q9C6J6", "uniprot_id": "Q9C6J6_ARATH", "mass": { "chemical_mass": 88414.0, "monoisotopic_mass": 88414.0 }, "refseq": {}, "gene_names": [ { "name": "F8A12.7", "type": "synonym", "evidence": [ { "id": "Q9C6J6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C6J6" } ] }, { "name": "F8A12_7", "type": "synonym", "evidence": [ { "id": "Q9C6J6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C6J6" } ] } ], "protein_names": [ { "name": "Aminotransferase-like, plant mobile domain family protein", "type": "synonym", "evidence": [ { "id": "Q9C6J6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C6J6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C6J6", "url": "https://www.uniprot.org/uniprotkb/Q9C6J6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C6J6", "locus": {} } ], "crossref": [ { "id": "841505", "url": "https://www.ncbi.nlm.nih.gov/gene/841505", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019557", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019557", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044824", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044824", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G50830", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G50830", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KKSMIDD", "url": "https://omabrowser.org/oma/group/KKSMIDD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46033", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46033", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46033:SF67", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46033:SF67", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G50830", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G50830", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C6J6", "url": "https://www.uniprot.org/uniprotkb/Q9C6J6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C6J6-1", "url": "https://www.uniprot.org/uniprotkb/Q9C6J6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENASSSSSLLIEEREEVMVTDKGRCLRKNHFLKPFVTSINGGSVAELPRRDERLSVSSSQLLKLFSLRRTFSGFWVVDAPFVSWLAKMEALHAQTWRKAGIFEAIKVSTYSITKNPSLILSVSEKWCPETKSFVFPWGEATITLEDVMVLLGFSVLGSPVFAPLETSETRDSVKKLENVRIQHMNSSTDRRVSQKSWVSTFLGRGGDMEHVAFLVLWLSLFVFPVKSRRNISNHVFPIAVRLARGERIALAPAILAILYRDLDRIHEVSREDCVDKFHLESLFKLVQVWTWERFRNIRPKASDIPKGEPRIAQWHGLHRRSKDAWFCFDDFEWRPYTKALNNWNPFRFYLEEAIWVTVDESIDDEFASFARCVTVSQIVGDGFVEDYFPNRVARQFGLDQDLPGLATCQRNSTEKEAWNDYNKSLIGLNLYMPSRLDQGSVTARYRVWWLKSVSKFLSPEEMKEESTETFNARKTFDHYDEDYDDDIDASPKVLPLSQVFQKLEEGFPAKRRRSVIHRLVKQDKIGGCVNSRVSSGWKMNNTSEDFTNNRSIYKPVVLKRAHGGNDGISTGEEKDNMTIAQRIRSKEKYSSNAENTLGDASETLGKRARRYMTVDSDDDSEPCQKLASTKIEQRSEEDDETTSKSHKTREIFNDFEVDVIGNTAGKKSMIDDEQQHNGSTMKSIGSNGSKKAEFLVHKNSEKHRCNEKMCSEVKKQEEIDERLKERKLAIKEMELKLEAHMIEMEKTLSMIRKWKIRGNQIKSRVSA", "length": 768, "header": "tr|Q9C6J6-1|Q9C6J6_ARATH Isoform 1 of Aminotransferase-like, plant mobile domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C6J6-1" }, "isoforms": [ { "isoform_ac": "Q9C6J6-1", "url": "https://www.uniprot.org/uniprotkb/Q9C6J6/entry", "sequence": { "sequence": "MENASSSSSLLIEEREEVMVTDKGRCLRKNHFLKPFVTSINGGSVAELPRRDERLSVSSSQLLKLFSLRRTFSGFWVVDAPFVSWLAKMEALHAQTWRKAGIFEAIKVSTYSITKNPSLILSVSEKWCPETKSFVFPWGEATITLEDVMVLLGFSVLGSPVFAPLETSETRDSVKKLENVRIQHMNSSTDRRVSQKSWVSTFLGRGGDMEHVAFLVLWLSLFVFPVKSRRNISNHVFPIAVRLARGERIALAPAILAILYRDLDRIHEVSREDCVDKFHLESLFKLVQVWTWERFRNIRPKASDIPKGEPRIAQWHGLHRRSKDAWFCFDDFEWRPYTKALNNWNPFRFYLEEAIWVTVDESIDDEFASFARCVTVSQIVGDGFVEDYFPNRVARQFGLDQDLPGLATCQRNSTEKEAWNDYNKSLIGLNLYMPSRLDQGSVTARYRVWWLKSVSKFLSPEEMKEESTETFNARKTFDHYDEDYDDDIDASPKVLPLSQVFQKLEEGFPAKRRRSVIHRLVKQDKIGGCVNSRVSSGWKMNNTSEDFTNNRSIYKPVVLKRAHGGNDGISTGEEKDNMTIAQRIRSKEKYSSNAENTLGDASETLGKRARRYMTVDSDDDSEPCQKLASTKIEQRSEEDDETTSKSHKTREIFNDFEVDVIGNTAGKKSMIDDEQQHNGSTMKSIGSNGSKKAEFLVHKNSEKHRCNEKMCSEVKKQEEIDERLKERKLAIKEMELKLEAHMIEMEKTLSMIRKWKIRGNQIKSRVSA", "length": 768, "header": "tr|Q9C6J6-1|Q9C6J6_ARATH Isoform 1 of Aminotransferase-like, plant mobile domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C6J6-1" }, "locus": { "chromosome": "1", "start_pos": 18835271, "end_pos": 18838029, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G50830.1", "url": "https://www.ensemblgenomes.org/id/AT1G50830.1" }, { "database": "Ensembl Peptide", "id": "AT1G50830.1", "url": "https://www.ensemblgenomes.org/id/AT1G50830.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, 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"categories": [ "Protein Classification" ] }, { "id": "ath:AT1G27860", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G27860", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ICAMRTF", "url": "https://omabrowser.org/oma/group/ICAMRTF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31260", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31260", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31260:SF77", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31260:SF77", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04776", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04776", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9C6N2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9C6N2", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT1G27860", 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"sequence": { "sequence": "MPTEDRVCFTWEEYARHVREYWRGVAESDGFDSEDIRSPVVLTGLFHYDCQSGRHYPEPLLGTSFELAALLKFNKTMNLTSSYYITLLAHDPSLEKTFQVRVDEREYGSLDLTVAIARPKKDQNEVSDGVFQGPLPDWPSEDALRHDRNRFYELEISEWQATDWISLYLKLLILATDRGMFVQTGLPQVQILEVVIETEEENEKPPDKRLNARRAHVYITFTGLPKSPRLVEIGEHVERKAIIRRVIDASGYLTLLGKFWSGKDTDQQRSMTLPSGEQAESSKKRPRLS", "length": 289, "header": "sp|Q9C6N2-1|Y1278_ARATH Isoform 1 of UPF0725 protein At1g27860 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9C6N2-1" }, "locus": { "chromosome": "1", "start_pos": 9704558, "end_pos": 9706238, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G27860.1", "url": "https://www.ensemblgenomes.org/id/AT1G27860.1" }, { "database": "Ensembl Peptide", "id": "AT1G27860.1", "url": "https://www.ensemblgenomes.org/id/AT1G27860.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C6N2", "url": "https://www.uniprot.org/uniprotkb/Q9C6N2" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C6N2", "url": "https://www.uniprot.org/uniprotkb/Q9C6N2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G27860", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G27860", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", 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"Enzyme and Pathway" ] }, { "id": "MNPIVEK", "url": "https://omabrowser.org/oma/group/MNPIVEK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9C6P8", "url": "https://www.orthodb.org/?gene=Q9C6P8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47527", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47527", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47527:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47527:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25073", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25073", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G50620", "url": 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"MDVAISDDVPVNLESVEEKRDEETVEESPVKKKKPRFDEEVNRVAEIVLVLSALRKIRGGKPPTELEIDLMVEAKSKLVDMCQEFTPKDIIGVDAIGAVIEDLGFNGKLKDQRLGFRAPKLTISEKLSLGKRKMEELKKNPVVSTTSTSPAVNNVSMAHQWPNSEMKASASSVNASGSHYVREASGITQARMERPQFKSDLHTGTSQGPAVPAGNYFGNTTTWSAQPHSSTSTISFGTASDSKVPVPSSSRISDPSFRPFMSQTPPGAFPGMKGATYGQTSSPFGNNNHAEIAKLIHKVLQPRAKQNLLWNPPSREYMSKAMTCQICQGTINEIETVLICDACEKGYHLKCLHAHNIKGVPKSEWHCSRCVQLYNGKSFPPKYGRVMRSATTAKMSSSTAEVQLPAEKGVGKMDQKVSQEGMPHLETAKPTKDSAMEQTVEAEDVAMNPIVEKAMSEMVEAEGAAINPIVEAEDGAMNPIVEKAMSQIVEAEDAAINQAVDANFQTQAPTGNDDAESDDPSEPVSHSETLNPPELEKKEVMRKDATERSVSADCQDKNSKIIAESSLQEEISASQTENSPTQPPSQSDTDHSQQQKTTPNVEEEKSASQAENSPTQPPSQSNTDHFPTA", "length": 629, "header": "tr|Q9C6P8-1|Q9C6P8_ARATH Isoform 1 of RING/FYVE/PHD zinc finger superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C6P8-1" }, "isoforms": [ { "isoform_ac": "Q9C6P8-1", "url": "https://www.uniprot.org/uniprotkb/Q9C6P8/entry", "sequence": { "sequence": 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"https://www.uniprot.org/uniprotkb/Q9C704/entry", "sequence": { "sequence": "MDSESELISIISQILALTRSHVEEEEEAEAESKFLLFITRIISIVSSLNLNVQPEPGVISLISQMISLSSSISDSKPELELISLVNHMISLVNSIDSEPEPDPDLMSLITQIFSHLDFMDSDLELKSLFTQIVSLVSSMESDSEPEPERETKQPICLAPQFKLELSNGKNLVTGFVKRDGRKYDPEYCNPEYWRVLRLTTGEISHFLCPSCEGDNHEEYEKAPLEVKHPLHPKHSLQLILENSWGCRKKKCYCCDEILLWIFYYCWVCDCGMNIACVEKLPLLSIHHPKWHEHTLSLFPILISLTCNVCALDHFNCPFYICSPCDFVVHQSCITLPRVIRISRHLHRISFTPSFEQGDWSCGVCRKKIDNDCGGYSCGNSGCTYVAHSKCATQSNVWDGEDLEGKPEAIDEIGVNPFVRISLGIIQHFSHQQHYLRLDDNTGRDYDESKLCQACITPIYFGKFYSCMECNFILHEECANFSRKIQHPIHPHLLTLVTSATDKANTHDLCSACPWLFTTGFFYECHREGCRFNLHVRCGTISEPLVHGSHRHPLFLTSKPGDWRTCSVCKESSRYVTHETFNCVQCVFALCFKCAAIPQKVRYKHDNHVLILSYGKEIETSTMAYWCEACERKINPKGQFYNCDEYGCVTLHIECLIGKDLYMKPGSSWLFKGRKVRVLRNNHRMTRPICRECKDRCPHKIVFRRSTLNFCSTGCMRSKVFSLELYR", "length": 726, "header": "tr|Q9C704-1|Q9C704_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C704-1" }, "locus": { 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"reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9C704", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C704" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C704", "url": "https://www.uniprot.org/uniprotkb/Q9C704" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G66440", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G66440", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 479, "end_pos": 481, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9C704", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C704" }, { "id": "PF03107", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DC1", "eco_id": "ECO_0000259", "start_pos": 289, "end_pos": 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"Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G55070", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G55070", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HATINYF", "url": "https://omabrowser.org/oma/group/HATINYF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31111", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31111", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31111:SF94", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31111:SF94", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08268", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08268", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9C725", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9C725", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT1G55070", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G55070", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C725", "url": "https://www.uniprot.org/uniprotkb/Q9C725", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C725-1", "url": "https://www.uniprot.org/uniprotkb/Q9C725-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTKRKQQDTKENLTLTVFESNKRCSNSGGEYFDRIPADLVIKILSKLSAKSMAKCRCVCKLLSSIIRQPNYNQLFPIKYPDPPRFIFTFLGGGMLFSYTSTQPENPDENSSLVATAHHHTDIPRDFSQILSSVHGLVCYHRKIKNDTVFVIYNPITGQYVTLPILEAHATINYFAIGYDPINKRFKVLCVTSVHHGTGEEFDSQHQVLTFETGRRNLFWRKIQCRRHYYTHRYHKGICIKGVLYYAATSMKPMLGPMIVCFDVRSEKFGFITWKPPSLINYKGKLGSINSNDNDLVLWVLEHGQERKWSKHIYVKPLQWPEFNGIDVNFLVTSKGEAVFCPNHYDPQVPFYLYYYNLEENIVVRVRVEVPESQGSKRVLFHAVPNYLENMKLT", "length": 393, "header": "sp|Q9C725-1|FB61_ARATH Isoform 1 of Putative F-box protein At1g55070 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C725-1" }, "isoforms": [ { "isoform_ac": "Q9C725-1", "url": "https://www.uniprot.org/uniprotkb/Q9C725/entry#Q9C725-1", "sequence": { "sequence": "MTKRKQQDTKENLTLTVFESNKRCSNSGGEYFDRIPADLVIKILSKLSAKSMAKCRCVCKLLSSIIRQPNYNQLFPIKYPDPPRFIFTFLGGGMLFSYTSTQPENPDENSSLVATAHHHTDIPRDFSQILSSVHGLVCYHRKIKNDTVFVIYNPITGQYVTLPILEAHATINYFAIGYDPINKRFKVLCVTSVHHGTGEEFDSQHQVLTFETGRRNLFWRKIQCRRHYYTHRYHKGICIKGVLYYAATSMKPMLGPMIVCFDVRSEKFGFITWKPPSLINYKGKLGSINSNDNDLVLWVLEHGQERKWSKHIYVKPLQWPEFNGIDVNFLVTSKGEAVFCPNHYDPQVPFYLYYYNLEENIVVRVRVEVPESQGSKRVLFHAVPNYLENMKLT", "length": 393, "header": "sp|Q9C725-1|FB61_ARATH Isoform 1 of Putative F-box protein At1g55070 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C725-1" }, "locus": { "chromosome": "1", "start_pos": 20551452, "end_pos": 20552633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G55070.1", "url": "https://www.ensemblgenomes.org/id/AT1G55070.1" }, { "database": "Ensembl Peptide", "id": "AT1G55070.1", "url": "https://www.ensemblgenomes.org/id/AT1G55070.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C725", "url": "https://www.uniprot.org/uniprotkb/Q9C725" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C725", "url": "https://www.uniprot.org/uniprotkb/Q9C725" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G55070", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G55070", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9C725", "url": "https://www.uniprot.org/uniprotkb/Q9C725" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9C725-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 393, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9C725-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9C725" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9C725", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C725" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 29, "end_pos": 74, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 109, "end_pos": 111 }, { "start_pos": 12, "end_pos": 14 }, { "start_pos": 145, "end_pos": 147 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FHI6-1", "uniprot_ac": "Q9FHI6", "uniprot_id": "Q9FHI6_ARATH", "mass": { "chemical_mass": 87696.0, "monoisotopic_mass": 87696.0 }, "refseq": { "ac": "NP_001190474", "name": "RNI-like superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190474" }, "gene_names": [ { "name": "MFC19.17", "type": "recommended", "evidence": [ { "id": "Q9FHI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHI6" } ] }, { "name": "MFC19.17", "type": "synonym", "evidence": [ { "id": "NP_001190474", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190474" } ] }, { "name": "MFC19_17", "type": "synonym", "evidence": [ { "id": "NP_001190474", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190474" }, { "id": "Q9FHI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHI6" } ] } ], "protein_names": [ { "name": "RNI-like superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_001190474", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190474" }, { "id": "Q9FHI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHI6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FHI6", "url": "https://www.uniprot.org/uniprotkb/Q9FHI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MFC19.17", "url": "https://www.uniprot.org/uniprotkb/Q9FHI6", "locus": {} } ], "crossref": [ { "id": "AT5G45500", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G45500", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834586", "url": "https://www.ncbi.nlm.nih.gov/gene/834586", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055414", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055414", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G45500", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G45500", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RYIMVED", "url": "https://omabrowser.org/oma/group/RYIMVED/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47186:SF54", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47186:SF54", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001190474", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190474", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G45500", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G45500", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B9I9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9I9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9I9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9J0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9J0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9J0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9J5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9J5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9J5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHI6", "url": "https://www.uniprot.org/uniprotkb/Q9FHI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHI6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHI6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSGTQPEGLQAAQPAGLQAAGLQAAQPAGLQAAQPAGLQAAGKRKPPTTTEDPNDPQHIIHDFLTIVNKLEKEVDLPGAITRARTYDAEVDGLITADQPQTNLGRAESAPIPNAKPEGPDDHHIPKLQRNLRLLKEDVAKLQYLRSEVAEEVWKHIRPLELLLENVAKEQKKNPTKPPLTLGMKKDLDDINKKIFNLMCQVPLLPNKRKKAKGLDDDDGDGDNNNGKGIVCLPGIHANKADLRSRAVFRYVLREFEELSDQRKICLLTFAVFPENQEVNRTMLMYWWMGEGILSTKDISSQEGTEEVILKPEDVVKVILKDFTDRNLIEPVEIKRKVEPSSYKMAPFVHASVVLISKEIGLFDMYDIKDKPVMKKSGMHKVCLVEGSSSQQEAKAKKMEDVDHIETVFNVSERFPDFTFKWFSEDKPTRNKLTLSKVTYQKLKVFYLGRWERTAKRHIEVENPELMKNLKRMIKLKLLSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKALIYLDITDCYMIDRMPKRLSWLDNLEVLKGFVVSDATDEETVCTLAELVHLKKLRKLSISINKENFSIDDVFVAVKSFKKLEKLKVAWGGINTHPQGKGVDSEKGDENVKPKENIGILERAATMFRKEKDPTAPELPKTLKKLDLQCFPGEHLPEWLEPDNLLNVEKLYIKGGIKLTGFGKSLPSQNSKCKVTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQCPQVSLCPCDGIGIWRKPEEDEV", "length": 771, "header": "tr|Q9FHI6-1|Q9FHI6_ARATH Isoform 1 of RNI-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MFC19.17 PE=1 SV=1 CANONICAL=Q9FHI6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B9I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9I9/entry", "sequence": { "sequence": "MDSGTQPEGLQAAQPAGLQAAGLQAAQPAGLQAAGKRKPPTTTEDPNDPQHIIHDFLTIVNKLEKEVDLPGAITRARTYDAEVDGLITADQPQTNLGRAESAPIPNAKPEGPDDHHIPKLQRNLRLLKEDVAKLQYLRSEVAEEVWKHIRPLELLLENVAKEQKKNPTKPPLTLGMKKDLDDINKKIFNLMCQVPLLPNKRKKAKGLDDDDGDGDNNNGKGIVCLPGIHANKADLRSRAVFRYVLREFEELSDQRKICLLTFAVFPENQEVNRTMLMYWWMGEGILSTKDISSQEGTEEVILKPEDVVKVILKDFTDRNLIEPVEIKRKVEPSSYKMAPFVHASVVLISKEIGLFDMYDIKDKPVMKKSGMHKVCLVEGSSSQQEAKAKKMEDVDHIETVFNVSERFPDFTFKWFSEDKPTRNKLTLSKVTYQKLKVFYLGRWERTAKRHIEVENPELMKNLKRMIKLKLLSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKALIYLDITDCYMIDRMPKRLSWLDNLEVLKGFVVSDATDEETVCTLAELVHLKKLRKLSISINKENFSIDDVFVAVKSFKKLEKLKVAWGGINTHPQGKGVDSEKGDENVKPKENIGILERAATMFRKEKDPTAPELPKTLKKLDLQCFPGEHLPEWLEPDNLLNVEKLYIKGGIKLTGFGKSLPSQNSKCKVTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQCPQVSLCPCDGIGIWRKPEEDEV", "length": 763, "header": "tr|A0A1P8B9I9-1|Q9FHI6_ARATH Computationally mapped isoform of RNI-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MFC19.17 PE=1 SV=1 CANONICAL=Q9FHI6-1" }, "locus": { "chromosome": "5", "start_pos": 18432446, "end_pos": 18435469, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G45500.3", "url": "https://www.ensemblgenomes.org/id/AT5G45500.3" }, { "database": "Ensembl Peptide", "id": "AT5G45500.3", "url": "https://www.ensemblgenomes.org/id/AT5G45500.3" } ] } }, { "isoform_ac": "A0A1P8B9J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9J0/entry", "sequence": { "sequence": "MDSGTQPEGLQAAQPAGLQAAQPAGLQAAGKRKPPTTTEDPNDPQHIIHDFLTIVNKLEKEVDLPGAITRARTYDAEVDGLITADQPQTNLGRAESAPIPNAKPEGPDDHHIPKLQRNLRLLKEDVAKLQYLRSEVAEEVWKHIRPLELLLENVAKEQKKNPTKPPLTLGMKKDLDDINKKIFNLMCQVPLLPNKRKKAKGLDDDDGDGDNNNGKGIVCLPGIHANKADLRSRAVFRYVLREFEELSDQRKICLLTFAVFPENQEVNRTMLMYWWMGEGILSTKDISSQEGTEEVILKPEDVVKVILKDFTDRNLIEPVEIKRKVEPSSYKMAPFVHASVVLISKEIGLFDMYDIKDKPVMKKSGMHKVCLVEGSSSQQEAKAKKMEDVDHIETVFNVSERFPDFTFKWFSEDKPTRNKLTLSKVTYQKLKVFYLGRWERTAKRHIEVENPELMKNLKRMIKLKLLSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKALIYLDITDCYMIDRMPKRLSWLDNLEVLKGFVVSDATDEETVCTLAELVHLKKLRKLSISINKENFSIDDVFVAVKSFKKLEKLKVAWGGINTHPQGKGVDSEKGDENVKPKENIGILERAATMFRKEKDPTAPELPKTLKKLDLQCFPGEHLPEWLEPDNLLNVEKLYIKGGIKLTGFGKSLPSQNSKCKVTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQCPQVSLCPCDGIGIWRKPEEDEV", "length": 758, "header": "tr|A0A1P8B9J0-1|Q9FHI6_ARATH Computationally mapped isoform of RNI-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MFC19.17 PE=1 SV=1 CANONICAL=Q9FHI6-1" }, "locus": { "chromosome": "5", "start_pos": 18432458, "end_pos": 18435469, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G45500.9", "url": "https://www.ensemblgenomes.org/id/AT5G45500.9" }, { "database": "Ensembl Peptide", "id": "AT5G45500.9", "url": "https://www.ensemblgenomes.org/id/AT5G45500.9" } ] } }, { "isoform_ac": "A0A1P8B9J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9J5/entry", "sequence": { "sequence": "MDSGTQPEGLQAAQPAGLQAAGKRKPPTTTEDPNDPQHIIHDFLTIVNKLEKEVDLPGAITRARTYDAEVDGLITADQPQTNLGRAESAPIPNAKPEGPDDHHIPKLQRNLRLLKEDVAKLQYLRSEVAEEVWKHIRPLELLLENVAKEQKKNPTKPPLTLGMKKDLDDINKKIFNLMCQVPLLPNKRKKAKGLDDDDGDGDNNNGKGIVCLPGIHANKADLRSRAVFRYVLREFEELSDQRKICLLTFAVFPENQEVNRTMLMYWWMGEGILSTKDISSQEGTEEVILKPEDVVKVILKDFTDRNLIEPVEIKRKVEPSSYKMAPFVHASVVLISKEIGLFDMYDIKDKPVMKKSGMHKVCLVEGSSSQQEAKAKKMEDVDHIETVFNVSERFPDFTFKWFSEDKPTRNKLTLSKVTYQKLKVFYLGRWERTAKRHIEVENPELMKNLKRMIKLKLLSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKALIYLDITDCYMIDRMPKRLSWLDNLEVLKGFVVSDATDEETVCTLAELVHLKKLRKLSISINKENFSIDDVFVAVKSFKKLEKLKVAWGGINTHPQGKGVDSEKGDENVKPKENIGILERAATMFRKEKDPTAPELPKTLKKLDLQCFPGEHLPEWLEPDNLLNVEKLYIKGGIKLTGFGKSLPSQNSKCKVTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQCPQVSLCPCDGIGIWRKPEEDEV", "length": 750, "header": "tr|A0A1P8B9J5-1|Q9FHI6_ARATH Computationally mapped isoform of RNI-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MFC19.17 PE=1 SV=1 CANONICAL=Q9FHI6-1" }, "locus": { "chromosome": "5", "start_pos": 18432458, "end_pos": 18435524, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G45500.7", "url": "https://www.ensemblgenomes.org/id/AT5G45500.7" }, { "database": "Ensembl Peptide", "id": "AT5G45500.7", "url": "https://www.ensemblgenomes.org/id/AT5G45500.7" } ] } }, { "isoform_ac": "Q9FHI6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHI6/entry", "sequence": { "sequence": "MDSGTQPEGLQAAQPAGLQAAGLQAAQPAGLQAAQPAGLQAAGKRKPPTTTEDPNDPQHIIHDFLTIVNKLEKEVDLPGAITRARTYDAEVDGLITADQPQTNLGRAESAPIPNAKPEGPDDHHIPKLQRNLRLLKEDVAKLQYLRSEVAEEVWKHIRPLELLLENVAKEQKKNPTKPPLTLGMKKDLDDINKKIFNLMCQVPLLPNKRKKAKGLDDDDGDGDNNNGKGIVCLPGIHANKADLRSRAVFRYVLREFEELSDQRKICLLTFAVFPENQEVNRTMLMYWWMGEGILSTKDISSQEGTEEVILKPEDVVKVILKDFTDRNLIEPVEIKRKVEPSSYKMAPFVHASVVLISKEIGLFDMYDIKDKPVMKKSGMHKVCLVEGSSSQQEAKAKKMEDVDHIETVFNVSERFPDFTFKWFSEDKPTRNKLTLSKVTYQKLKVFYLGRWERTAKRHIEVENPELMKNLKRMIKLKLLSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKALIYLDITDCYMIDRMPKRLSWLDNLEVLKGFVVSDATDEETVCTLAELVHLKKLRKLSISINKENFSIDDVFVAVKSFKKLEKLKVAWGGINTHPQGKGVDSEKGDENVKPKENIGILERAATMFRKEKDPTAPELPKTLKKLDLQCFPGEHLPEWLEPDNLLNVEKLYIKGGIKLTGFGKSLPSQNSKCKVTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQCPQVSLCPCDGIGIWRKPEEDEV", "length": 771, "header": "tr|Q9FHI6-1|Q9FHI6_ARATH Isoform 1 of RNI-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MFC19.17 PE=1 SV=1 CANONICAL=Q9FHI6-1" }, "locus": { "chromosome": "5", "start_pos": 18432458, "end_pos": 18435469, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G45500.6", "url": "https://www.ensemblgenomes.org/id/AT5G45500.6" }, { "database": "Ensembl Peptide", "id": "AT5G45500.6", "url": "https://www.ensemblgenomes.org/id/AT5G45500.6" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 109, "end_pos": 109, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHI6" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser109" }, { "start_pos": 655, "end_pos": 655, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHI6" } ], "site_lbl": "Thr655" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B9I9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9I9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants.", "journal": "Mol. Cell. Proteomics", "date": "2007", "authors": "Maor Rudy, Jones Alex, N\u00fchse Thomas S, Studholme David J, Peck Scott C, Shirasu Ken", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B9I9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9I9" } ], "reference": [ { "type": "PubMed", "id": "17272265", "url": "https://glygen.org/publication/PubMed/17272265" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9FHI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHI6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B9I9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9I9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G45500", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G45500", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q9FHI6", "url": "https://www.uniprot.org/uniprotkb/Q9FHI6" } ], "pmid": "" }, { "name": "defense response to other organism", "id": "GO:0098542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098542", "evidence": [ { "database": "UniProtKB", "id": "Q9FHI6", "url": "https://www.uniprot.org/uniprotkb/Q9FHI6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FHI6", "url": "https://www.uniprot.org/uniprotkb/Q9FHI6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "Q9FHI6", "url": "https://www.uniprot.org/uniprotkb/Q9FHI6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 280, "end_pos": 282, "annotation": "n_glycosylation_sequon" }, { "start_pos": 410, "end_pos": 412, "annotation": "n_glycosylation_sequon" }, { "start_pos": 588, "end_pos": 590, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FHI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHI6" }, { "id": "PF23598", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23598" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Disease resistance R13L4/SHOC-2-like LRR", "eco_id": "ECO_0000259", "start_pos": 438, "end_pos": 693, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 109, 655 ], "sequon_annotation_sites": [ { "start_pos": 280, "end_pos": 282 }, { "start_pos": 410, "end_pos": 412 }, { "start_pos": 588, "end_pos": 590 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FHB2-1", "uniprot_ac": "Q9FHB2", "uniprot_id": "Y5828_ARATH", "mass": { "chemical_mass": 31674.0, "monoisotopic_mass": 31674.0 }, "refseq": {}, "gene_names": [ { "name": "MCK7.15", "type": "recommended", "evidence": [ { "id": "Q9FHB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2" } ] }, { "name": "MCK7.15", "type": "synonym", "evidence": [ { "id": "Q9FHB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2" } ] }, { "name": "MCK7_15", "type": "synonym", "evidence": [ { "id": "Q9FHB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2" } ] } ], "protein_names": [ { "name": "Putative B3 domain-containing protein At5g58280", "type": "recommended", "evidence": [ { "id": "Q9FHB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FHB2", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2", "locus": {} } ], "crossref": [ { "id": "Q9FHB2", "url": "https://alphafold.ebi.ac.uk/entry/Q9FHB2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G58280", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G58280", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd10017", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10017", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "835940", "url": "https://www.ncbi.nlm.nih.gov/gene/835940", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044837", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044837", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G58280", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G58280", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HRTCNIT", "url": "https://omabrowser.org/oma/group/HRTCNIT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31391", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31391", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31391:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31391:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02362", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02362", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FHB2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FHB2", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G58280", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G58280", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B9N7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9N7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9N7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9P0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9P0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9P0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9P0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHB2", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHB2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAMAYEEARKLRLQENHKRFQSNFVALPQFQLLQQRNHKPIDKALLATAEPRRSSRVRTVISSYRDDVVVDTGRTSNLRRSRHSSTWATYISRPLHECKFASYEEKVGAFKAAEKFQRSLKSPHPYFVKSMVRSHVYSCFWLGLPSRFCADNFPEETMEIELEDEEGEVYEAVYIGRRAGLSGGWKRFALDHKLDDGDALLFELVEPKKFKIYVFKGNENANLTSARKRGRATTPSEEEEEEEDKDVEESGDEEHSSRATKRSSVRLLRKRKA", "length": 273, "header": "sp|Q9FHB2-1|Y5828_ARATH Isoform 1 of Putative B3 domain-containing protein At5g58280 OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9FHB2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B9N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9N7/entry", "sequence": { "sequence": "MAMAYEEARKLRLQENHKRFQVTLHRYRVSSSPPSLIRLSILIIESQDLGISQISKTLTQITKKTPQRNHKPIDKALLATAEPRRSSRVRTVISSYRDDVVVDTGRTSNLRRSRHSSTWATYISRPLHECKFASYEEKVGAFKAAEKFQRSLKSPHPYFVKSMVRSHVYSCFWLGLPSRFCADNFPEETMEIELEDEEGEVYEAVYIGRRAGLSGGWKRFALDHKLDDGDALLFELVEPKKFKIYVFKGNENANLTSARKRGRATTPSEEEEEEEDKDVEESGDEEHSSRATKRSSVRLLRKRKA", "length": 305, "header": "tr|A0A1P8B9N7-1|Y5828_ARATH Computationally mapped isoform of Putative B3 domain-containing protein At5g58280 OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9FHB2-1" }, "locus": { "chromosome": "5", "start_pos": 23567308, "end_pos": 23568859, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G58280.3", "url": "https://www.ensemblgenomes.org/id/AT5G58280.3" }, { "database": "Ensembl Peptide", "id": "AT5G58280.3", "url": "https://www.ensemblgenomes.org/id/AT5G58280.3" } ] } }, { "isoform_ac": "A0A1P8B9P0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9P0/entry", "sequence": { "sequence": "MAMAYEEARKLRLQENHKRFQVTLHRYRVSSSPPSLIRLSILIIESQDLGISQISKTLTQITKKTPQQRNHKPIDKALLATAEPRRSSRVRTVISSYRDDVVVDTGRTSNLRRSRHSSTWATYISRPLHECKFASYEEKVGAFKAAEKFQRSLKSPHPYFVKSMVRSHVYSCFWLGLPSRFCADNFPEETMEIELEDEEGEVYEAVYIGRRAGLSGGWKRFALDHKLDDGDALLFELVEPKKFKIYVFKGNENANLTSARKRGRATTPSEEEEEEEDKDVEESGDEEHSSRATKRSSVRLLRKRKA", "length": 306, "header": "tr|A0A1P8B9P0-1|Y5828_ARATH Computationally mapped isoform of Putative B3 domain-containing protein At5g58280 OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9FHB2-1" }, "locus": { "chromosome": "5", "start_pos": 23567300, "end_pos": 23568859, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G58280.2", "url": "https://www.ensemblgenomes.org/id/AT5G58280.2" }, { "database": "Ensembl Peptide", "id": "AT5G58280.2", "url": "https://www.ensemblgenomes.org/id/AT5G58280.2" } ] } }, { "isoform_ac": "Q9FHB2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2/entry#Q9FHB2-1", "sequence": { "sequence": "MAMAYEEARKLRLQENHKRFQSNFVALPQFQLLQQRNHKPIDKALLATAEPRRSSRVRTVISSYRDDVVVDTGRTSNLRRSRHSSTWATYISRPLHECKFASYEEKVGAFKAAEKFQRSLKSPHPYFVKSMVRSHVYSCFWLGLPSRFCADNFPEETMEIELEDEEGEVYEAVYIGRRAGLSGGWKRFALDHKLDDGDALLFELVEPKKFKIYVFKGNENANLTSARKRGRATTPSEEEEEEEDKDVEESGDEEHSSRATKRSSVRLLRKRKA", "length": 273, "header": "sp|Q9FHB2-1|Y5828_ARATH Isoform 1 of Putative B3 domain-containing protein At5g58280 OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9FHB2-1" }, "locus": { "chromosome": "5", "start_pos": 23567338, "end_pos": 23568769, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G58280.1", "url": "https://www.ensemblgenomes.org/id/AT5G58280.1" }, { "database": "Ensembl Peptide", "id": "AT5G58280.1", "url": "https://www.ensemblgenomes.org/id/AT5G58280.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones.", "journal": "DNA Res.", "date": "2000", "authors": "Sato S, Nakamura Y, Kaneko T, Katoh T, Asamizu E, Kotani H, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FHB2", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2" } ], "reference": [ { "type": "PubMed", "id": "10718197", "url": "https://glygen.org/publication/PubMed/10718197" } ] }, { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B9N7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9N7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "The plant B3 superfamily.", "journal": "Trends Plant Sci.", "date": "2008", "authors": "Swaminathan Kankshita, Peterson Kevin, Jack Thomas", "evidence": [ { "database": "UniProtKB", "id": "Q9FHB2", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2" } ], "reference": [ { "type": "PubMed", "id": "18986826", "url": "https://glygen.org/publication/PubMed/18986826" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FHB2", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G58280", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G58280", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "Q9FHB2", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FHB2", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "Q9FHB2", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 222, "end_pos": 224, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FHB2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 273, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FHB2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FHB2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FHB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHB2" }, { "id": "PRU00326", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00326" } ], "ann_type": "Nucleotide_Binding_Annotation", "uniprotkb_annotation": "TF-B3", "eco_id": "ECO_0000255", "start_pos": 127, "end_pos": 218, "start_aa": "Phe", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 222, "end_pos": 224 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FGR8-1", "uniprot_ac": "Q9FGR8", "uniprot_id": "FBD19_ARATH", "mass": { "chemical_mass": 46194.0, "monoisotopic_mass": 46194.0 }, "refseq": {}, "gene_names": [ { "name": "K6A12.13", "type": "synonym", "evidence": [ { "id": "Q9FGR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGR8" } ] }, { "name": "K6A12_13", "type": "synonym", "evidence": [ { "id": "Q9FGR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGR8" } ] } ], "protein_names": [ { "name": "Putative FBD-associated F-box protein At5g50270", "type": "recommended", "evidence": [ { "id": "Q9FGR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGR8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGR8", "url": "https://www.uniprot.org/uniprotkb/Q9FGR8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FGR8", "locus": {} } ], "crossref": [ { "id": "Q9FGR8", "url": "https://alphafold.ebi.ac.uk/entry/Q9FGR8", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G50270", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G50270", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835092", "url": "https://www.ncbi.nlm.nih.gov/gene/835092", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G50270", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G50270", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PACQLEL", "url": "https://omabrowser.org/oma/group/PACQLEL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FGR8", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FGR8", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G50270", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G50270", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B9Q3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9Q3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9Q3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9Q3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FGR8", "url": "https://www.uniprot.org/uniprotkb/Q9FGR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FGR8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRISGLPDELLLRVLSLLPNVKDVVVTMVLSKRWQFLWMMVPKLVYDDSYQNLEYGKFSRFVDRSLFMRKAPGIETLHFKLGQNCGNGDIQWWIRAASKFCFRELIIEINCSTSASPSILPRSLYTECRMLVTLKLKKAVLVDVSSPTCFPSLKNLSLVSVKYPGNEFVKSLLSSCHVLEDLVVEQCINDNVTIFSVKVPSLKSLVLRTSKERAPDGESGFVVEAPSLEYLDIDQTGGFCVIENGMPNLAEAYVSVLHHHPVKFLSSITSVKRLYLCLLPHSILSCMQDMYPIRCVFHRLVHITLCTCDDEWLNLLACLLKGSPKLISLKLEKHHGHLICSPSPLRDDLSSVPECVLSSLETVEWVDYEGTEAERQLVEFILRNGSCLKKFVISPESVNPDKKYEMI", "length": 408, "header": "sp|Q9FGR8-1|FBD19_ARATH Isoform 1 of Putative FBD-associated F-box protein At5g50270 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9FGR8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B9Q3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9Q3/entry", "sequence": { "sequence": "MDRISGLPDELLLRVLSLLPNVKDVVVTMVLSKRWQFLWMMVPKLVYDDSYQNLEYGKFSRFVDRSLFMRKAPGIETLHFKLGQNCGNGDIQWWIRAASKFCFRELIIEINCSTSASPSILPRSLYTECRMLVTLKLKKAVLVDVSSPTCFPSLKNLSLVSVKYPGNEFVKSLLSSCHVLEDLVVEQCINDNVTIFSVKVPSLKSLVLRTSKERAPDGESGFVVEAPSLEYLDIDQTGGFCVIENGMPNLAEAYVSVLHHHPVKFLSSITSVKRLYLCLLPHRICILLDVSSTVLYISRYALVTMSG", "length": 307, "header": "tr|A0A1P8B9Q3-1|FBD19_ARATH Computationally mapped isoform of Putative FBD-associated F-box protein At5g50270 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FGR8-1" }, "locus": { "chromosome": "5", "start_pos": 20457487, "end_pos": 20458996, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G50270.2", "url": "https://www.ensemblgenomes.org/id/AT5G50270.2" }, { "database": "Ensembl Peptide", "id": "AT5G50270.2", "url": "https://www.ensemblgenomes.org/id/AT5G50270.2" } ] } }, { "isoform_ac": "Q9FGR8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGR8/entry#Q9FGR8-1", "sequence": { "sequence": "MDRISGLPDELLLRVLSLLPNVKDVVVTMVLSKRWQFLWMMVPKLVYDDSYQNLEYGKFSRFVDRSLFMRKAPGIETLHFKLGQNCGNGDIQWWIRAASKFCFRELIIEINCSTSASPSILPRSLYTECRMLVTLKLKKAVLVDVSSPTCFPSLKNLSLVSVKYPGNEFVKSLLSSCHVLEDLVVEQCINDNVTIFSVKVPSLKSLVLRTSKERAPDGESGFVVEAPSLEYLDIDQTGGFCVIENGMPNLAEAYVSVLHHHPVKFLSSITSVKRLYLCLLPHSILSCMQDMYPIRCVFHRLVHITLCTCDDEWLNLLACLLKGSPKLISLKLEKHHGHLICSPSPLRDDLSSVPECVLSSLETVEWVDYEGTEAERQLVEFILRNGSCLKKFVISPESVNPDKKYEMI", "length": 408, "header": "sp|Q9FGR8-1|FBD19_ARATH Isoform 1 of Putative FBD-associated F-box protein At5g50270 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9FGR8-1" }, "locus": { "chromosome": "5", "start_pos": 20457487, "end_pos": 20458873, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G50270.1", "url": "https://www.ensemblgenomes.org/id/AT5G50270.1" }, { "database": "Ensembl Peptide", "id": "AT5G50270.1", "url": "https://www.ensemblgenomes.org/id/AT5G50270.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 395, "end_pos": 395, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGR8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGR8" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser395" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones.", "journal": "DNA Res.", "date": "2000", "authors": "Sato S, Nakamura Y, Kaneko T, Katoh T, Asamizu E, Kotani H, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FGR8", "url": "https://www.uniprot.org/uniprotkb/Q9FGR8" } ], "reference": [ { "type": "PubMed", "id": "10718197", "url": "https://glygen.org/publication/PubMed/10718197" } ] }, { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B9Q3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9Q3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FGR8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGR8" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FGR8", "url": "https://www.uniprot.org/uniprotkb/Q9FGR8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G50270", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G50270", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FGR8", "url": "https://www.uniprot.org/uniprotkb/Q9FGR8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 156, "end_pos": 158, "annotation": "n_glycosylation_sequon" }, { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 385, "end_pos": 387, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FGR8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 408, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FGR8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FGR8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 395 ], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 156, "end_pos": 158 }, { "start_pos": 192, "end_pos": 194 }, { "start_pos": 385, "end_pos": 387 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FKE3-1", "uniprot_ac": "Q9FKE3", "uniprot_id": "Q9FKE3_ARATH", "mass": { "chemical_mass": 62304.0, "monoisotopic_mass": 62304.0 }, "refseq": {}, "gene_names": [ { "name": "K18C1.10", "type": "synonym", "evidence": [ { "id": "Q9FKE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKE3" } ] }, { "name": "K18C1_10", "type": "synonym", "evidence": [ { "id": "Q9FKE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKE3" } ] } ], "protein_names": [ { "name": "Disease resistance protein (TIR-NBS-LRR class) family", "type": "synonym", "evidence": [ { "id": "Q9FKE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKE3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKE3", "url": "https://www.uniprot.org/uniprotkb/Q9FKE3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FKE3", "locus": {} } ], "crossref": [ { "id": "AT5G45220", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G45220", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834558", "url": "https://www.ncbi.nlm.nih.gov/gene/834558", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G45220", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G45220", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RDIEYMY", "url": "https://omabrowser.org/oma/group/RDIEYMY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32009", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32009", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32009:SF62", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32009:SF62", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G45220", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G45220", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B9S7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9S7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9S7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9S7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FKE3", "url": "https://www.uniprot.org/uniprotkb/Q9FKE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FKE3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKE3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATLSSSSSVELPPQHTVFILYNGSRMGFIYHLIMALEKKNINVFVGFNGCICEPVERLSNRIESIIVLVIFTSRYTESKWCLMKLVDINKCAEKDHLVAIPIFYKLDPSTVRGLSGQFGDAFRDLRESTGLMEKWKEALKSISDRPGIRVDKSSPKAKRIEIVVKKVLSRIPSEGSHNASVDPLENSDTRLTSSGEENRTFGIKERLKEFKDKLDLNKMRSQLGMVIGCLLVLFFVLKQSAYTSTRLIGEGGAIGAISAIDRIADNVPKIREYVPEEGTEKPRDTYTEFHTGKYGTKPERSSSDVKTNADLLDRTFTDTRMDGKVKPPKFQVFINFRGDQLRNNFVGYLVDALRRSEINVFIDNQEQRGEDLNTLFKRIEDSGIAIVVFSSRYTESKWCLEELVKIKERVHQGLLKVLPIFYKVTPTNVKRPKGEFGDHFRDKEYMYESDEPMIKRWKEAIVFISHRFALTLDEKSSSEMLDTSLHMYVHARVWNLKELISTFLTKCSSALEIDFVETIVKEVLKILQAICKVESSQSSFCAEKA", "length": 546, "header": "tr|Q9FKE3-1|Q9FKE3_ARATH Isoform 1 of Disease resistance protein (TIR-NBS-LRR class) family OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FKE3-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B9S7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9S7/entry", "sequence": { "sequence": "MATLSSSSSVELPPQHTVFILYNGSRMGFIYHLIMALEKKNINVFVGFNGCICEPVERLSNRIESIIVLVIFTSRYTESKWCLMKLVDINKCAEKDHLVAIPIFYKLDPSTVRGLSGQFGDAFRDLRESTGLMEKWKEALKSISDRPGIRVDKSSPKAKRIEIVVKKVLSRIPSEGSHNASVDPLENSDTRLTSSGEENRTFGIKERLKEFKDKLDLNKMRSQLGMVIGCLLVLFFVLKQSAYTSTRLIGEGGAIGAISAIDRIADNVPKIREYVPEEGTEKPRDTYTEFHTGKYGTKPERSSSDVKTNADLLDRTFTDTRMDGKVKPPKFQVFINFRGDQLRNNFVGYLVDALRRSEINVFIDNQEQRGEDLNTLFKRIEDSGIAIVVFSSRYTESKWCLEELVKIKERVHQGLLKVLPIFYKVTPTNVKRPKGEFGDHFRDKEYMYESDEPMIKRWKEAIVFISHRFALTLDEKSSALEIDFVETIVKEVLKILQAICKVESSQSSFCAEKA", "length": 514, "header": "tr|A0A1P8B9S7-1|Q9FKE3_ARATH Computationally mapped isoform of Disease resistance protein (TIR-NBS-LRR class) family OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FKE3-1" }, "locus": { "chromosome": "5", "start_pos": 18298774, "end_pos": 18301104, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G45220.2", "url": "https://www.ensemblgenomes.org/id/AT5G45220.2" }, { "database": "Ensembl Peptide", "id": "AT5G45220.2", "url": "https://www.ensemblgenomes.org/id/AT5G45220.2" } ] } }, { "isoform_ac": "Q9FKE3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKE3/entry", "sequence": { "sequence": "MATLSSSSSVELPPQHTVFILYNGSRMGFIYHLIMALEKKNINVFVGFNGCICEPVERLSNRIESIIVLVIFTSRYTESKWCLMKLVDINKCAEKDHLVAIPIFYKLDPSTVRGLSGQFGDAFRDLRESTGLMEKWKEALKSISDRPGIRVDKSSPKAKRIEIVVKKVLSRIPSEGSHNASVDPLENSDTRLTSSGEENRTFGIKERLKEFKDKLDLNKMRSQLGMVIGCLLVLFFVLKQSAYTSTRLIGEGGAIGAISAIDRIADNVPKIREYVPEEGTEKPRDTYTEFHTGKYGTKPERSSSDVKTNADLLDRTFTDTRMDGKVKPPKFQVFINFRGDQLRNNFVGYLVDALRRSEINVFIDNQEQRGEDLNTLFKRIEDSGIAIVVFSSRYTESKWCLEELVKIKERVHQGLLKVLPIFYKVTPTNVKRPKGEFGDHFRDKEYMYESDEPMIKRWKEAIVFISHRFALTLDEKSSSEMLDTSLHMYVHARVWNLKELISTFLTKCSSALEIDFVETIVKEVLKILQAICKVESSQSSFCAEKA", "length": 546, "header": "tr|Q9FKE3-1|Q9FKE3_ARATH Isoform 1 of Disease resistance protein (TIR-NBS-LRR class) family OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FKE3-1" }, "locus": { "chromosome": "5", "start_pos": 18298926, "end_pos": 18301166, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G45220.1", "url": "https://www.ensemblgenomes.org/id/AT5G45220.1" }, { "database": "Ensembl Peptide", "id": "AT5G45220.1", "url": "https://www.ensemblgenomes.org/id/AT5G45220.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 426, "end_pos": 426, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKE3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKE3" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr426" }, { "start_pos": 428, "end_pos": 428, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKE3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKE3" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr428" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B9S7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9S7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FKE3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKE3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B9S7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9S7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G45220", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G45220", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FKE3", "url": "https://www.uniprot.org/uniprotkb/Q9FKE3" } ], "pmid": "" }, { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q9FKE3", "url": "https://www.uniprot.org/uniprotkb/Q9FKE3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FKE3", "url": "https://www.uniprot.org/uniprotkb/Q9FKE3" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9FKE3", "url": "https://www.uniprot.org/uniprotkb/Q9FKE3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 179, "end_pos": 181, "annotation": "n_glycosylation_sequon" }, { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FKE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKE3" }, { "id": "PS50104", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50104" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TIR", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 172, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 426, 428 ], "sequon_annotation_sites": [ { "start_pos": 179, "end_pos": 181 }, { "start_pos": 199, "end_pos": 201 }, { "start_pos": 23, "end_pos": 25 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FLK5-1", "uniprot_ac": "Q9FLK5", "uniprot_id": "Q9FLK5_ARATH", "mass": { "chemical_mass": 30791.0, "monoisotopic_mass": 30791.0 }, "refseq": { "ac": "NP_200936", "name": "Remorin family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200936" }, "gene_names": [ { "name": "MFB13.5", "type": "recommended", "evidence": [ { "id": "Q9FLK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLK5" } ] }, { "name": "MFB13.5", "type": "synonym", "evidence": [ { "id": "NP_200936", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200936" } ] }, { "name": "MFB13_5", "type": "synonym", "evidence": [ { "id": "NP_200936", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200936" }, { "id": "Q9FLK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLK5" } ] } ], "protein_names": [ { "name": "Remorin family protein", "type": "synonym", "evidence": [ { "id": "NP_200936", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200936" }, { "id": "Q9FLK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLK5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FLK5", "url": "https://www.uniprot.org/uniprotkb/Q9FLK5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MFB13.5", "url": "https://www.uniprot.org/uniprotkb/Q9FLK5", "locus": {} } ], "crossref": [ { "id": "AT5G61280", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G61280", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "836249", "url": "https://www.ncbi.nlm.nih.gov/gene/836249", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G61280", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G61280", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ETKADSW", "url": "https://omabrowser.org/oma/group/ETKADSW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31471", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31471", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31471:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31471:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03763", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03763", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_200936", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200936", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G61280", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G61280", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BA00", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BA00-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BA14", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BA14-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA14-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLK5", "url": "https://www.uniprot.org/uniprotkb/Q9FLK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLK5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNLVKQRRRRVSISENIKTDLPMLSELDITDYPALNWLKNQSYWYEKNDYYNEKESELAVSVAVAAFVIRSMEEADKQKSKRIREEIKRSRTKKSNLVIPNTQVKRLSKSYTQEVKIGEESFRKKLLEYPSENRRPQEIGSSSGTSGLASASSKADSWEKSQIKKIRLRYEKMKADIVGWENERKLAATLLMEKRKSELEKRKGINNQHYKSKLARIQLIADGAKKQLEEKRRSKEAQVHGKVKKMSRTGKVPNNYFCFRCY", "length": 263, "header": "tr|Q9FLK5-1|Q9FLK5_ARATH Isoform 1 of Remorin family protein OS=Arabidopsis thaliana OX=3702 GN=MFB13.5 PE=1 SV=1 CANONICAL=Q9FLK5-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BA00-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA00/entry", "sequence": { "sequence": "MLSELDITDYPALNWLKNQSYWYEKNDYYNEKESELAVSVAVAAFVIRSMEEADKQKSKRIREEIKRSRTKKSNLVIPNTQVKRLSKSYTQEVKIGEESFRKKLLEYPSENRRPQEIGSSSGTSGLASASSKADSWEKSQIKKIRLRYEKMKADIVGWENERKLAATLLMEKRKSELEKRKGINNQHYKSKLARIQLIADGAKKQLEEKRRSKEAQVHGKVKKMSRTGKVPNNYFCFRCY", "length": 240, "header": "tr|A0A1P8BA00-1|Q9FLK5_ARATH Computationally mapped isoform of Remorin family protein OS=Arabidopsis thaliana OX=3702 GN=MFB13.5 PE=1 SV=1 CANONICAL=Q9FLK5-1" }, "locus": { "chromosome": "5", "start_pos": 24643556, "end_pos": 24644804, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G61280.2", "url": "https://www.ensemblgenomes.org/id/AT5G61280.2" }, { "database": "Ensembl Peptide", "id": "AT5G61280.2", "url": "https://www.ensemblgenomes.org/id/AT5G61280.2" } ] } }, { "isoform_ac": "A0A1P8BA14-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA14/entry", "sequence": { "sequence": "MDNLVKQRRRRVSISENIKTDLPMLSELDITDYPALNWLKNQSYWYEKNDYYNEKESELAVSVAVAAFVIRSMEEADKQKSKRIREEIKRSRTKKSNLVIPNTQVKRLSKSYTQEVKIGEESFRKKLLEYPSENRRPQEIGSSSGTSGLASASSKADSWEKSQIKKIRLRYEKMKADIVGWENERKLAATLLMEKRKVISLSSE", "length": 204, "header": "tr|A0A1P8BA14-1|Q9FLK5_ARATH Computationally mapped isoform of Remorin family protein OS=Arabidopsis thaliana OX=3702 GN=MFB13.5 PE=1 SV=1 CANONICAL=Q9FLK5-1" }, "locus": { "chromosome": "5", "start_pos": 24643561, "end_pos": 24644947, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G61280.3", "url": "https://www.ensemblgenomes.org/id/AT5G61280.3" }, { "database": "Ensembl Peptide", "id": "AT5G61280.3", "url": "https://www.ensemblgenomes.org/id/AT5G61280.3" } ] } }, { "isoform_ac": "Q9FLK5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLK5/entry", "sequence": { "sequence": "MDNLVKQRRRRVSISENIKTDLPMLSELDITDYPALNWLKNQSYWYEKNDYYNEKESELAVSVAVAAFVIRSMEEADKQKSKRIREEIKRSRTKKSNLVIPNTQVKRLSKSYTQEVKIGEESFRKKLLEYPSENRRPQEIGSSSGTSGLASASSKADSWEKSQIKKIRLRYEKMKADIVGWENERKLAATLLMEKRKSELEKRKGINNQHYKSKLARIQLIADGAKKQLEEKRRSKEAQVHGKVKKMSRTGKVPNNYFCFRCY", "length": 263, "header": "tr|Q9FLK5-1|Q9FLK5_ARATH Isoform 1 of Remorin family protein OS=Arabidopsis thaliana OX=3702 GN=MFB13.5 PE=1 SV=1 CANONICAL=Q9FLK5-1" }, "locus": { "chromosome": "5", "start_pos": 24643561, "end_pos": 24644990, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G61280.1", "url": "https://www.ensemblgenomes.org/id/AT5G61280.1" }, { "database": "Ensembl Peptide", "id": 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}, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FHF6-1", "uniprot_ac": "Q9FHF6", "uniprot_id": "Q9FHF6_ARATH", "mass": { "chemical_mass": 98795.0, "monoisotopic_mass": 98795.0 }, "refseq": {}, "gene_names": [ { "name": "K11I1.8", "type": "synonym", 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Classification" ] }, { "id": "IPR058192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G46490", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46490", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YVNLNFF", "url": "https://omabrowser.org/oma/group/YVNLNFF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017:SF228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017:SF228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01582", "url": 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"Protein" ] }, { "id": "A0A1P8BA80", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BA80-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA80-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BA82", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BA82-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA82-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BA91", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BA91-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA91-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BA95", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BA95-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA95-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHF6", "url": "https://www.uniprot.org/uniprotkb/Q9FHF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHF6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHF6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSSSSRNWLYDVFLSFRGGDVRVTFRSHFLKEFDRKLITAFRDNEIERSHSLWPDLEQAIKDSRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYGVDPSQVRYQIGDFGRIFEKTCKRQTEEVKNQWKKALTLVANMLGFDSAKWDDEAKMIEEIANDVLRKLLLTTSKDFDDFVGLEDHIANMSALLDLESKEVKMVGIWGSSGIGKTTIARALFNNLFRHFQVRKFIDRSFAYKSREIHSSANPDDHNMKLHLQESFLSEILRMPNIKIDDPTALEERLKYQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLTAHGIDHIYEVSFPTDVHACQMLCQSAFKQNYAPEGFGDLVVDVVRHACSFPLGLNLLGKYLRGRNEEYWMDILPRLENGLRLDGKIEKILRISYDGLDSEDQEIFRHIACIFIHMKVTTIKSLLAESDVSFALENLADKSLIHVRQGYVVMHRSLQEMGRKIVRIQSIDNPGEREFLVDPNDIHDVLNACTGTQKVLGISLNTRNIVELDVHESAIKGMSNLRFLEIKDFISQWKKALIDVSKIAFDSTEWNRGLITQNYVNLLLLSTTPKEYEELVGIEDHTAEMSLPATKSFDFEDDGLHLPASFDYLPPTLKLLCWPKFPMRCMPYDFCPENLVKLEMRESKLYKLWEGVVPLTCLKEMDLDGSVNLKEIPDLSMATNLETLNFENCKSLVELPSFIRNLNKLLKLNMAFCNSLETLPTGFNLKSLDRLSFSECTKLKTFPKFSTNISVLNLFGTNIEEYPSHLHLENLVEFSISKEESNMIQWEGAKVSSSKLNILSKLFYYHCLYLNYCRRLKFCTLVY", "length": 858, "header": "tr|Q9FHF6-1|Q9FHF6_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHF6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BA65-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA65/entry", "sequence": { "sequence": "MVNTCVAVIKSSYLSAVMSNVLYPPRQTPYFSSIPLLTISISIVFVLSFLLLSLSLSMASSSSSRNWLYDVFLSFRGGDVRVTFRSHFLKEFDRKLITAFRDNEIERSHSLWPDLEQAIKDSRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYGVDPSQVRYQIGDFGRIFEKTCKRQTEEVKNQWKKALTLVANMLGFDSAKWDDEAKMIEEIANDVLRKLLLTTSKDFDDFVGLEDHIANMSALLDLESKEVKMVGIWGSSGIGKTTIARALFNNLFRHFQVRKFIDRSFAYKSREIHSSANPDDHNMKLHLQESFLSEILRMPNIKIDDPTALEERLKYQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLTAHGIDHIYEVSFPTDVHACQMLCQSAFKQNYAPEGFGDLVVDVVRHACSFPLGLNLLGKYLRGRNEEYWMDILPRLENGLRLDGKIEKILRISYDGLDSEDQEIFRHIACIFIHMKVTTIKSLLAESDVSFALENLADKSLIHVRQGYVVMHRSLQEMGRKIVRIQSIDNPGEREFLVDPNDIHDVLNACTGTQKVLGISLNTRNIVELDVHESAIKGMSNLRFLEIKDFISQWKKALIDVSKIAFDSTEWYNFLIIRHFEINCCFIFVQ", "length": 661, "header": "tr|A0A1P8BA65-1|Q9FHF6_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHF6-1" }, "locus": { "chromosome": "5", "start_pos": 18850645, "end_pos": 18853896, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46490.4", "url": "https://www.ensemblgenomes.org/id/AT5G46490.4" }, { "database": "Ensembl Peptide", "id": "AT5G46490.4", "url": "https://www.ensemblgenomes.org/id/AT5G46490.4" } ] } }, { "isoform_ac": "A0A1P8BA80-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA80/entry", "sequence": { "sequence": "MSNVLYPPRQTPYFSSIPLLTISISIVFVLSFLLLSLSLSMASSSSSRNWLYDVFLSFRGGDVRVTFRSHFLKEFDRKLITAFRDNEIERSHSLWPDLEQAIKDSRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYGVDPSQVRYQIGDFGRIFEKTCKRQTEEVKNQWKKALTLVANMLGFDSAKWDDEAKMIEEIANDVLRKLLLTTSKDFDDFVGLEDHIANMSALLDLESKEVKMVGIWGSSGIGKTTIARALFNNLFRHFQVRKFIDRSFAYKSREIHSSANPDDHNMKLHLQESFLSEILRMPNIKIDDPTALEERLKYQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLTAHGIDHIYEVSFPTDVHACQMLCQSAFKQNYAPEGFGDLVVDVVRHACSFPLGLNLLGKYLRGRNEEYWMDILPRLENGLRLDGKIEKILRISYDGLDSEDQEIFRHIACIFIHMKVTTIKSLLAESDVSFALENLADKSLIHVRQGYVVMHRSLQEMGRKIVRIQSIDNPGEREFLVDPNDIHDVLNACTGTQKVLGISLNTRNIVELDVHESAIKGMSNLRFLEIKDFISQWKKALIDVSKIAFDSTEWYNFLIIRHFEINCCFIFVQ", "length": 644, "header": "tr|A0A1P8BA80-1|Q9FHF6_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHF6-1" }, "locus": { "chromosome": "5", "start_pos": 18850679, "end_pos": 18853867, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46490.6", "url": "https://www.ensemblgenomes.org/id/AT5G46490.6" }, { "database": "Ensembl Peptide", "id": "AT5G46490.6", "url": "https://www.ensemblgenomes.org/id/AT5G46490.6" } ] } }, { "isoform_ac": "A0A1P8BA82-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA82/entry", "sequence": { "sequence": "MVNTCVAVIKSSYLSAVMSNVLYPPRQTPYFSSIPLLTISISIVFVLSFLLLSLSLSMASSSSSRNWLYDVFLSFRGGDVRVTFRSHFLKEFDRKLITAFRDNEIERSHSLWPDLEQAIKDSRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYGVDPSQVRYQIGDFGRIFEKTCKRQTEEVKNQWKKALTLVANMLGFDSAKWDDEAKMIEEIANDVLRKLLLTTSKDFDDFVGLEDHIANMSALLDLESKEVKMVGIWGSSGIGKTTIARALFNNLFRHFQVRKFIDRSFAYKSREIHSSANPDDHNMKLHLQESFLSEILRMPNIKIDDPTALEERLKYQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLTAHGIDHIYEVSFPTDVHACQMLCQSAFKQNYAPEGFGDLVVDVVRHACSFPLGLNLLGKYLRGRNEEYWMDILPRLENGLRLDGKIEKILRISYDGLDSEDQEIFRHIACIFIHMKVTTIKSLLAESDVSFALENLADKSLIHVRQGYVVMHRSLQEMGRKIVRIQSIDNPGEREFLVDPNDIHDVLNACTVSFFFLKNLSFHDSIYKV", "length": 600, "header": "tr|A0A1P8BA82-1|Q9FHF6_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHF6-1" }, "locus": { "chromosome": "5", "start_pos": 18850645, "end_pos": 18853896, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46490.3", "url": "https://www.ensemblgenomes.org/id/AT5G46490.3" }, { "database": "Ensembl Peptide", "id": "AT5G46490.3", "url": "https://www.ensemblgenomes.org/id/AT5G46490.3" } ] } }, { "isoform_ac": "A0A1P8BA91-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA91/entry", "sequence": { "sequence": "MASSSSSRNWLYDVFLSFRGGDVRVTFRSHFLKEFDRKLITAFRDNEIERSHSLWPDLEQAIKDSRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYGVDPSQVRYQIGDFGRIFEKTCKRQTEEVKNQWKKALTLVANMLGFDSAKWDDEAKMIEEIANDVLRKLLLTTSKDFDDFVGLEDHIANMSALLDLESKEVKMVGIWGSSGIGKTTIARALFNNLFRHFQVRKFIDRSFAYKSREIHSSANPDDHNMKLHLQESFLSEILRMPNIKIDDPTALEERLKYQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLTAHGIDHIYEVSFPTDVHACQMLCQSAFKQNYAPEGFGDLVVDVVRHACSFPLGLNLLGKYLRGRNEEYWMDILPRLENGLRLDGKIEKILRISYDGLDSEDQEIFRHIACIFIHMKVTTIKSLLAESDVSFALENLADKSLIHVRQGYVVMHRSLQEMGRKIVRIQSIDNPGEREFLVDPNDIHDVLNACTGTQKVLGISLNTRNIVELDVHESAIKGMSNLRFLEIKDFISQWKKALIDVSKIAFDSTEWYNFLIIRHFEINCCFIFVQ", "length": 604, "header": "tr|A0A1P8BA91-1|Q9FHF6_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHF6-1" }, "locus": { "chromosome": "5", "start_pos": 18850776, "end_pos": 18853136, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46490.8", "url": "https://www.ensemblgenomes.org/id/AT5G46490.8" }, { "database": "Ensembl Peptide", "id": "AT5G46490.8", "url": "https://www.ensemblgenomes.org/id/AT5G46490.8" } ] } }, { "isoform_ac": "A0A1P8BA95-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA95/entry", "sequence": { "sequence": "MSNVLYPPRQTPYFSSIPLLTISISIVFVLSFLLLSLSLSMASSSSSRNWLYDVFLSFRGGDVRVTFRSHFLKEFDRKLITAFRDNEIERSHSLWPDLEQAIKDSRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYGVDPSQVRYQIGDFGRIFEKTCKRQTEEVKNQWKKALTLVANMLGFDSAKWDDEAKMIEEIANDVLRKLLLTTSKDFDDFVGLEDHIANMSALLDLESKEVKMVGIWGSSGIGKTTIARALFNNLFRHFQVRKFIDRSFAYKSREIHSSANPDDHNMKLHLQESFLSEILRMPNIKIDDPTALEERLKYQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLTAHGIDHIYEVSFPTDVHACQMLCQSAFKQNYAPEGFGDLVVDVVRHACSFPLGLNLLGKYLRGRNEEYWMDILPRLENGLRLDGKIEKILRISYDGLDSEDQEIFRHIACIFIHMKVTTIKSLLAESDVSFALENLADKSLIHVRQGYVVMHRSLQEMGRKIVRIQSIDNPGEREFLVDPNDIHDVLNACTVSFFFLKNLSFHDSIYKV", "length": 583, "header": "tr|A0A1P8BA95-1|Q9FHF6_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHF6-1" }, "locus": { "chromosome": "5", "start_pos": 18850679, "end_pos": 18853867, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46490.5", "url": "https://www.ensemblgenomes.org/id/AT5G46490.5" }, { "database": "Ensembl Peptide", "id": "AT5G46490.5", "url": "https://www.ensemblgenomes.org/id/AT5G46490.5" } ] } }, { "isoform_ac": "Q9FHF6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHF6/entry", "sequence": { "sequence": "MASSSSSRNWLYDVFLSFRGGDVRVTFRSHFLKEFDRKLITAFRDNEIERSHSLWPDLEQAIKDSRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYGVDPSQVRYQIGDFGRIFEKTCKRQTEEVKNQWKKALTLVANMLGFDSAKWDDEAKMIEEIANDVLRKLLLTTSKDFDDFVGLEDHIANMSALLDLESKEVKMVGIWGSSGIGKTTIARALFNNLFRHFQVRKFIDRSFAYKSREIHSSANPDDHNMKLHLQESFLSEILRMPNIKIDDPTALEERLKYQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLTAHGIDHIYEVSFPTDVHACQMLCQSAFKQNYAPEGFGDLVVDVVRHACSFPLGLNLLGKYLRGRNEEYWMDILPRLENGLRLDGKIEKILRISYDGLDSEDQEIFRHIACIFIHMKVTTIKSLLAESDVSFALENLADKSLIHVRQGYVVMHRSLQEMGRKIVRIQSIDNPGEREFLVDPNDIHDVLNACTGTQKVLGISLNTRNIVELDVHESAIKGMSNLRFLEIKDFISQWKKALIDVSKIAFDSTEWNRGLITQNYVNLLLLSTTPKEYEELVGIEDHTAEMSLPATKSFDFEDDGLHLPASFDYLPPTLKLLCWPKFPMRCMPYDFCPENLVKLEMRESKLYKLWEGVVPLTCLKEMDLDGSVNLKEIPDLSMATNLETLNFENCKSLVELPSFIRNLNKLLKLNMAFCNSLETLPTGFNLKSLDRLSFSECTKLKTFPKFSTNISVLNLFGTNIEEYPSHLHLENLVEFSISKEESNMIQWEGAKVSSSKLNILSKLFYYHCLYLNYCRRLKFCTLVY", "length": 858, "header": "tr|Q9FHF6-1|Q9FHF6_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHF6-1" }, "locus": { "chromosome": "5", "start_pos": 18850776, "end_pos": 18853843, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46490.2", "url": "https://www.ensemblgenomes.org/id/AT5G46490.2" }, { "database": "Ensembl Peptide", "id": "AT5G46490.2", "url": "https://www.ensemblgenomes.org/id/AT5G46490.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 501, "end_pos": 501, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHF6" } ], "site_lbl": "Ser501" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BA65", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA65" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BA65", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BA65" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G46490", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46490", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q9FHF6", "url": "https://www.uniprot.org/uniprotkb/Q9FHF6" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FHF6", "url": "https://www.uniprot.org/uniprotkb/Q9FHF6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "Q9FHF6", "url": "https://www.uniprot.org/uniprotkb/Q9FHF6" } ], "pmid": "" }, { "name": "NAD+ nucleosidase activity, cyclic ADP-ribose generating", "id": "GO:0061809", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061809", "evidence": [ { "database": "UniProtKB", "id": "Q9FHF6", "url": "https://www.uniprot.org/uniprotkb/Q9FHF6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9FHF6", "url": "https://www.uniprot.org/uniprotkb/Q9FHF6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 783, "end_pos": 785, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16301", "name": "", "equation": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "O23530-2", "O48573-1", "F4HT77-1", "F4I902-1", "F4J339-1", "F4JNA9-1", "F4KHI3-1", "Q0WSX8-1", "Q9XGM3-1", "Q9C5Q9-1", "Q9C7X0-1", "Q9FT77-1", "F4I594-1", "F4JNB7-1", "F4JT80-1", "F4JWM0-1", "F4KHH8-1", "F4KIF3-1", "Q9CAK1-1", "Q9FHF0-1", "Q9SZ66-1", "F4JT78-1", "F4JT82-1", "O49471-1", "O82500-1", "Q9FI14-1", "Q9SCZ2-1", "Q9LUJ8-1", "Q9SYC9-1", "A0A1P8AT27-1", "A0A1P8B6A5-1", "A0A1P8B6H3-1", "Q9SW60-1", "A0A1P8B9V7-1", "Q9FKM9-1", "A0A1P8BDK2-1", "F4KFY1-1", "Q9LFN1-1", "F4I270-1", "F4J359-1", "F4J361-1", "Q9FHE8-1", "Q9FHE9-1", "Q9FKB9-1", "Q9M0Q5-1", "F4IBL4-1", "Q9FH20-1", "Q9FF28-1", "Q9FKE2-1", "Q9FN83-1", "Q9M285-1", "F4IMF2-1", "F4KD45-1", "F4J910-1", "O65507-1", "Q9FHF6-1", "Q8LFT2-1", "Q9M8X8-1", "Q9CAK0-1", "Q9FKR7-1", "F4I901-1", "F4JNB2-1", "A0A1P8B8A2-1", "Q9FHF4-1", "Q9FHG0-1", "Q9CAD9-1", "F4JNB9-1", "F4JWL7-1", "F4JWL8-1", "F4JYI4-1", "F4KFY5-1", "F4I9F1-1", "Q9CAE0-1", "Q9CAD8-1", "Q9FFS5-1", "Q9FGT2-1", "Q9FJG4-1", "Q9FL35-1", "Q9FXA6-1", "Q9LSX5-1", "Q9ZVX6-1" ], "evidence": [ { "id": "16301", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16301" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A1P8AT27", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8AT27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AT27" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8AT27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AT27" } ] } ] }, { "uniprot_ac": "A0A1P8B6A5", "gene_name": "SIKIC1", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B6A5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6A5" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8B6A5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6A5" } ] } ] }, { "uniprot_ac": "A0A1P8B6H3", "gene_name": "DL4490C", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B6H3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6H3" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8B6H3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6H3" } ] } ] }, { "uniprot_ac": "A0A1P8B8A2", "gene_name": "DL3225C", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B8A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8A2" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8B8A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8A2" } ] } ] }, { "uniprot_ac": "A0A1P8B9V7", "gene_name": "MPL12.5", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B9V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9V7" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8B9V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9V7" } ] } ] }, { "uniprot_ac": "A0A1P8BDK2", "gene_name": "MDJ22.11", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8BDK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDK2" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8BDK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDK2" } ] } ] }, { "uniprot_ac": "F4HT77", "gene_name": "RBA1", "activity": [ { "ec_number": "3.2.2.-", "activity": "", "evidence": [ { "id": "F4HT77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HT77" } ] }, { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "F4HT77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HT77" } ] } ] }, { "uniprot_ac": "F4I270", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "F4I270", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I270" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "F4I270", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I270" } ] } ] }, { "uniprot_ac": "F4I594", "gene_name": "RLM1A", "activity": [ { "ec_number": "3.2.2.6", 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hydrolase-related protein", "type": "synonym", "evidence": [ { "id": "Q9FHN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHN1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FHN1", "url": "https://www.uniprot.org/uniprotkb/Q9FHN1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FHN1", "locus": {} } ], "crossref": [ { "id": "AT5G51530", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G51530", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835227", "url": "https://www.ncbi.nlm.nih.gov/gene/835227", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006866", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006866", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052398", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052398", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G51530", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G51530", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "Q9FHN1", "url": "https://oglcnac.org/atlas/detail/Q9FHN1", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "CAKENYI", "url": "https://omabrowser.org/oma/group/CAKENYI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22975", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22975", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22975:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22975:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00443", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00443", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04780", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04780", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04781", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04781", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G51530", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G51530", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BAL0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BAL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BAL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BAL0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHN1", "url": "https://www.uniprot.org/uniprotkb/Q9FHN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHN1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMKPSFLEDVEVIKLITKSREEFVKGNHCKALEILEDLIFDHKKDKDSWFLHIKQGTMFVKLEDITENPDVGFAYLVASVQCYSQDVILSRLCAMGFYNLAKQLGSVSYYKQCVKKSKQDLSVTYPENTSPVARSMLQELKKDMNKEFNTLIRDAERMIAGAKTSPLSSESKVWEPKKSSDLVDDEIQELRSYWMGLDIKIKRDFMKVSIAKLKSFVEGVHNREGRDVFEKVLTSAKADRKWTFWMCRSKCLKKLSSAEECKNHFEQQHDADFKNASKKDMVQRIGKDWARKISVGAWEPVDTVAAVEMIKNRLADVKAFAPKNGWSEEWPLAADEDRSKLLKEIKLLLVSLCDHKILPSSIREWLMRFPVQHLAKLDVSEQSLIDSHLVGTPQSICFLESHELNQILDFLKTIKCKRNDGTDLVCRAVNSFLDHTRVKEKIDFDPQFSFLLLDKRLLKCKDVPFDDEGTINVFDPNAHYAKAPAQGDDIISWLTDYNSVDTIFPRPIREHNFGIWVAVLKAVQFTFSFLGKKYAKKYLVLDYDAALTVVENLCMSEDERRKNLLEDQWNKYASLLCDSCEERVSENSITANFFLWAVRDVLQGASHPTFDFLDSEDCMNLIRQRKSLGDDIALKSIHHLKSVVTHKVLLIDSKILLIDNSRITLLTNLTRLSAFDNRTYILRLLKPFLLNEIVNMESNAKSDIAAAYLLLEEEKKSRSKKKKNNKRNSTSLSTPLDKTVEHEPSVDLEPGVTSPSLKIVKEDFMEPEDTRAGERGRLEISSNTDNQEEATKFDPDMQNMPREDSLSEHMESASGEASARYNSALDMTLKLILDLFTFLFSLISSQKHVVLQALLNIKILKEYLMHNMQPFQDHLEEPVPSALQTLFTAFVSEDIKIEGVYSCLLSDLLVSVEEMFSMVCVEKLSDADAAEVVVAIFEFWHCWKYRERESLVTRLFTLEENERMSCIKCRSRPNYPEQRSHGIVVAADSIRDLKCALGNMKFVDILKVTRMEYKMLCDTRSGGCGRTNIVHHIISRCPPIFTIVLEWEKSETEKEISETTKALEWEIDISRLYEGLEPNTNYRLVSMVGCSEVEEEHICIAYEKNRWVNLKRESLVGEDIGNWKSVVRFCGEKKVRPEILFYEAARWMA", "length": 1149, "header": "tr|Q9FHN1-1|Q9FHN1_ARATH Isoform 1 of Ubiquitin carboxyl-terminal hydrolase-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHN1-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BAL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BAL0/entry", "sequence": { "sequence": "MMKPSFLEDVEVIKLITKSREEFVKGNHCKALEILEDLIFDHKKDKDSWFLHIKQGTMFVKLEDITENPDVGFAYLVASVQCYSQDVILSRLCAMGFYNLAKQLGSVSYYKQCVKKSKQDLSVTYPENTSPVARSMLQELKKDMNKEFNTLIRDAERMIAGAKTSPLSSESKVWEPKKSSDLVDDEIQELRSYWMGLDIKIKRDFMKVSIAKLKSFVEGVHNREGRDVFEKVLTSAKADRKWTFWMCRSKCLKKLSSAEECKNHFEQQHDADFKNASKKDMVQRIGKDWARKISVGAWEPVDTVAAVEMIKNRLADVKAFAPKNGWSEEWPLAADEDRSKLLKEIKLLLVSLCDHKILPSSIREWLMRFPVQHLAKLDVSEQSLIDSHLVGTPQSICFLESHELNQILDFLKTIKCKRNDGTDLVCRAVNSFLDHTRVKEKIDFDPQFSFLLLDKRLLKCKDVPFDDEGTINVFDPNAHYAKAPAQGDDIISWLTDYNSVDTIFPRPIREHNFGIWVAVLKAVQFTFSFLGKKYAKKYLVLDYDAALTVVENLCMSEDERRKNLLEDQWNKYASLLCDSCEERVSENSITANFFLWAVRDVLQGASHPTFDFLDSEDCMNLIRQRKSLGDDIALKSIHHLKSVVTHKVLLIDSKILLIDNSRITLLTNLTRLSAFDNRTYILRLLKPFLLNEIVNMESNAKSDIAAAYLLLEEEKKSRSKKKKNNKRNSTSLSTPLDKTVEHEPSVDLEPGVTSPSLKIVKEDFMEPEDTRAGERGRLEISSNTDNQEEATKFDPDMQNMPREDSLSEHMESASGEASARYNSALDMTLKALLNIKILKEYLMHNMQPFQDHLEEPVPSALQTLFTAFVSEDIKIEGVYSCLLSDLLVSVEEMFSMVCVEKLSDADAAEVVVAIFEFWHCWKYRERESLVTRLFTLEENERMSCIKCRSRPNYPEQRSHGIVVAADSIRDLKCALGNMKFVDILKVTRMEYKMLCDTRSGGCGRTNIVHHIISRCPPIFTIVLEWEKSETEKEISETTKALEWEIDISRLYEGLEPNTNYRLVSMVGCSEVEEEHICIAYEKNRWVNLKRESLVGEDIGNWKSVVRFCGEKKVRPEILFYEAARWMA", "length": 1127, "header": "tr|A0A1P8BAL0-1|Q9FHN1_ARATH Computationally mapped isoform of Ubiquitin carboxyl-terminal hydrolase-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHN1-1" }, "locus": { "chromosome": "5", "start_pos": 20927069, "end_pos": 20931502, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G51530.2", "url": "https://www.ensemblgenomes.org/id/AT5G51530.2" }, { "database": "Ensembl Peptide", "id": "AT5G51530.2", "url": "https://www.ensemblgenomes.org/id/AT5G51530.2" } ] } }, { "isoform_ac": "Q9FHN1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHN1/entry", "sequence": { "sequence": "MMKPSFLEDVEVIKLITKSREEFVKGNHCKALEILEDLIFDHKKDKDSWFLHIKQGTMFVKLEDITENPDVGFAYLVASVQCYSQDVILSRLCAMGFYNLAKQLGSVSYYKQCVKKSKQDLSVTYPENTSPVARSMLQELKKDMNKEFNTLIRDAERMIAGAKTSPLSSESKVWEPKKSSDLVDDEIQELRSYWMGLDIKIKRDFMKVSIAKLKSFVEGVHNREGRDVFEKVLTSAKADRKWTFWMCRSKCLKKLSSAEECKNHFEQQHDADFKNASKKDMVQRIGKDWARKISVGAWEPVDTVAAVEMIKNRLADVKAFAPKNGWSEEWPLAADEDRSKLLKEIKLLLVSLCDHKILPSSIREWLMRFPVQHLAKLDVSEQSLIDSHLVGTPQSICFLESHELNQILDFLKTIKCKRNDGTDLVCRAVNSFLDHTRVKEKIDFDPQFSFLLLDKRLLKCKDVPFDDEGTINVFDPNAHYAKAPAQGDDIISWLTDYNSVDTIFPRPIREHNFGIWVAVLKAVQFTFSFLGKKYAKKYLVLDYDAALTVVENLCMSEDERRKNLLEDQWNKYASLLCDSCEERVSENSITANFFLWAVRDVLQGASHPTFDFLDSEDCMNLIRQRKSLGDDIALKSIHHLKSVVTHKVLLIDSKILLIDNSRITLLTNLTRLSAFDNRTYILRLLKPFLLNEIVNMESNAKSDIAAAYLLLEEEKKSRSKKKKNNKRNSTSLSTPLDKTVEHEPSVDLEPGVTSPSLKIVKEDFMEPEDTRAGERGRLEISSNTDNQEEATKFDPDMQNMPREDSLSEHMESASGEASARYNSALDMTLKLILDLFTFLFSLISSQKHVVLQALLNIKILKEYLMHNMQPFQDHLEEPVPSALQTLFTAFVSEDIKIEGVYSCLLSDLLVSVEEMFSMVCVEKLSDADAAEVVVAIFEFWHCWKYRERESLVTRLFTLEENERMSCIKCRSRPNYPEQRSHGIVVAADSIRDLKCALGNMKFVDILKVTRMEYKMLCDTRSGGCGRTNIVHHIISRCPPIFTIVLEWEKSETEKEISETTKALEWEIDISRLYEGLEPNTNYRLVSMVGCSEVEEEHICIAYEKNRWVNLKRESLVGEDIGNWKSVVRFCGEKKVRPEILFYEAARWMA", "length": 1149, "header": "tr|Q9FHN1-1|Q9FHN1_ARATH Isoform 1 of Ubiquitin carboxyl-terminal hydrolase-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHN1-1" }, "locus": { "chromosome": "5", "start_pos": 20927118, "end_pos": 20931886, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G51530.1", "url": "https://www.ensemblgenomes.org/id/AT5G51530.1" }, { "database": "Ensembl Peptide", "id": "AT5G51530.1", "url": "https://www.ensemblgenomes.org/id/AT5G51530.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 807, "start_aa": "Ser", "end_pos": 807, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser807", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FHN1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9FHN1" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 812, "start_aa": "Ser", "end_pos": 812, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser812", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FHN1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9FHN1" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 814, "start_aa": "Ser", "end_pos": 814, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser814", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FHN1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9FHN1" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 828, "start_aa": "Thr", "end_pos": 828, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr828", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FHN1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9FHN1" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FHN1", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9FHN1" } ], "filter_code": "000000000000000000000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000" } ], "phosphorylation": [ { "start_pos": 249, "end_pos": 249, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHN1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHN1" } ], "site_lbl": "Ser249" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_reported_with_glycan" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BAL0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BAL0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BAL0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BAL0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9FHN1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9FHN1" }, { "database": "O-GlcNAc Atlas", "id": "Q9FHN1", "url": "https://oglcnac.org/atlas/detail/Q9FHN1" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "pathway": [ { "id": "ath:AT5G51530", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G51530", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { 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"end_pos": 412, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FL99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FL99" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Tyr412" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, 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"categories": [ "Protein" ] }, { "id": "Q9FM94", "url": "https://www.uniprot.org/uniprotkb/Q9FM94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FM94-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM94-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSISLLPDDFLLRILSLLPTKDVLNTSVLSKRWRYLWKLVPKLQYSLIDKNADHGTFVRFVDRSLLLSMAPVLESLHLKLGRQCSEVDIGFWVRIAVEKGLCELDFDYEHYKTEPCRLPQSLFTCGTLTVLKLKNVSLKDVQFPVCFKLLKTLHLEYVIFLDKETPQKLLSSCPILEVFDLTRDDDDVDNVMSFSVMVPSLQRFIYCGGSGAELVMNTPSLKYLKLSGCGYECMIGNLPEIVEAHVEVACSTDDILTSLASVKRLLLCLPTEPELPTGTIFHQLEHLEFCSCCTEWDILMFMLKHSPKLRSLKLNETHGYTIVSQSDPMFHWEEPSSVPETLMFVLETLEWRNYRGLKMENELASFLLKHSRRLKIATFSPADCKQVRIELRTTVGMKYRILMELARLPRGSAECELVFG", "length": 421, "header": "sp|Q9FM94-1|FBD21_ARATH Isoform 1 of FBD-associated F-box protein At5g56370 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FM94-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BBG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBG7/entry", "sequence": { "sequence": "MDSISLLPDDFLLRILSLLPTKDVLNTSVLSKRWRYLWKLVPKLQYSLIDKNADHGTFVRFVDRSLLLSMAPVLESLHLKLGRQCSEVDIGFWVRIAVEKGLCELDFDYEHYKTEPCRLPQSLFTCGTLTVLKLKNVSLKDVQFPVCFKLLKTLHLEYVIFLDKETPQKLLSSCPILEVFDLTRDDDDVDNVMSFSVMVPSLQRFIYCGGSGAELVMNTPSLKYLKLSGCGYECMIGNLPEIVEAHVEVACSTDDILTSLASVKRLLLCLPTEPELPTGTIFHQLEHLEFCSCCTEWDILMFMLKHSPKLRSLKLNEVSVPF", "length": 322, "header": "tr|A0A1P8BBG7-1|FBD21_ARATH Computationally mapped isoform of FBD-associated F-box protein At5g56370 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FM94-1" }, "locus": { "chromosome": "5", "start_pos": 22835931, "end_pos": 22837972, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56370.3", "url": "https://www.ensemblgenomes.org/id/AT5G56370.3" }, { "database": "Ensembl Peptide", "id": "AT5G56370.3", "url": "https://www.ensemblgenomes.org/id/AT5G56370.3" } ] } }, { "isoform_ac": "Q9FM94-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM94/entry#Q9FM94-1", "sequence": { "sequence": "MDSISLLPDDFLLRILSLLPTKDVLNTSVLSKRWRYLWKLVPKLQYSLIDKNADHGTFVRFVDRSLLLSMAPVLESLHLKLGRQCSEVDIGFWVRIAVEKGLCELDFDYEHYKTEPCRLPQSLFTCGTLTVLKLKNVSLKDVQFPVCFKLLKTLHLEYVIFLDKETPQKLLSSCPILEVFDLTRDDDDVDNVMSFSVMVPSLQRFIYCGGSGAELVMNTPSLKYLKLSGCGYECMIGNLPEIVEAHVEVACSTDDILTSLASVKRLLLCLPTEPELPTGTIFHQLEHLEFCSCCTEWDILMFMLKHSPKLRSLKLNETHGYTIVSQSDPMFHWEEPSSVPETLMFVLETLEWRNYRGLKMENELASFLLKHSRRLKIATFSPADCKQVRIELRTTVGMKYRILMELARLPRGSAECELVFG", "length": 421, "header": "sp|Q9FM94-1|FBD21_ARATH Isoform 1 of FBD-associated F-box protein At5g56370 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FM94-1" }, "locus": { "chromosome": "5", "start_pos": 22835981, "end_pos": 22837963, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56370.2", "url": "https://www.ensemblgenomes.org/id/AT5G56370.2" }, { "database": "Ensembl Peptide", "id": "AT5G56370.2", "url": "https://www.ensemblgenomes.org/id/AT5G56370.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 86, "end_pos": 86, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FM94", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FM94" } ], "site_lbl": "Ser86" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BBG7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBG7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BBG7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBG7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Sato S, Kaneko T, Kotani H, Nakamura Y, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FM94", "url": "https://www.uniprot.org/uniprotkb/Q9FM94" } ], "reference": [ { "type": "PubMed", "id": "9628582", "url": "https://glygen.org/publication/PubMed/9628582" } ] } ], "pathway": [ { "id": "ath:AT5G56370", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G56370", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 136, "end_pos": 138, "annotation": "n_glycosylation_sequon" }, { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FM94-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 421, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FM94-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FM94" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FM94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FM94" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 1, "end_pos": 52, "start_aa": "Met", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 86 ], "sequon_annotation_sites": [ { "start_pos": 136, "end_pos": 138 }, { "start_pos": 26, "end_pos": 28 }, { "start_pos": 316, "end_pos": 318 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FMC4-1", "uniprot_ac": "Q9FMC4", "uniprot_id": "Q9FMC4_ARATH", "mass": { "chemical_mass": 88266.0, "monoisotopic_mass": 88266.0 }, "refseq": { "ac": "NP_196106", "name": "splicing factor 3A subunit", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196106" }, "gene_names": [ { "name": "MUK11.18", "type": "recommended", "evidence": [ { "id": "Q9FMC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMC4" } ] }, { "name": "MUK11.18", "type": "synonym", "evidence": [ { "id": "NP_196106", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196106" } ] }, { "name": "MUK11_18", "type": "synonym", "evidence": [ { "id": "NP_196106", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196106" }, { "id": "Q9FMC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMC4" } ] } ], "protein_names": [ { "name": "Splicing factor 3A subunit", "type": "synonym", "evidence": [ { "id": "Q9FMC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMC4/entry#names_and_taxonomy" } ] }, { "name": "splicing factor 3A subunit", "type": "synonym", "evidence": [ { "id": "NP_196106", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196106" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMC4", "url": "https://www.uniprot.org/uniprotkb/Q9FMC4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MUK11.18", "url": "https://www.uniprot.org/uniprotkb/Q9FMC4", "locus": {} } ], "crossref": [ { "id": "AT5G04860", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G04860", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "830365", "url": "https://www.ncbi.nlm.nih.gov/gene/830365", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G04860", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G04860", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FQWNEEF", "url": "https://omabrowser.org/oma/group/FQWNEEF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31182", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31182", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31182:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31182:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10358", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10358", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_196106", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196106", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G04860", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G04860", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BBH2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BBH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FMC4", "url": "https://www.uniprot.org/uniprotkb/Q9FMC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FMC4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMC4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVKMKQIMRWPPWPPLFAVKFDVIVVVHQMDGLLDSDGGGDDSTDQSQRGGGTTTRKRPVVEIKWKGPKSVTLKRSVVRNLTEEGGFRGDGVVEWNEEFKRVCEFSVYKEGSFLPWFVSLTVFSGLNQGSKEKVRSFGKASLNIAEYFSLMKEDDVQVKVPLKDCDSSSVRSPHVHISLQFSPKESLPERQRSALPVLWSPLSAEAEKAESVVKVGLRKMKTFNNCMSSTQASEKESEKDGSSGSGSDGKSPERNLDSDSSYPFDTDSLDEGDAADESEENKENESSLADPVNYKTLRSANWARGSFHTVTNPEDEDLIYYSHRSPLAETGHCSDEVSNDVVSLEQAKGQMSKKRMLSWKKRKLSFRSPKQKGEPLLKKDCLEEGGDDIDFDRRQLSSSDESNSDWYRSDDAIMKPLSQFGDDDFVVGSWETKEIISRDGLMKLTARVFLASIDQRSERAAGESACTALVAVMAHWLGSNRDIIPTRSEFDSLIREGSSEWRNMCENEEYRERFPDKHFDLETVLQAKVRPICVVPERSFIGFFHPEKSEEEEGKEDASLDFLKGVMSFDSIWEELMKQEPEESASEPVIYIVSWNDHFFVLLVNHDAYYIIDTLGERLYEGCNQAYVLKFDKDAEIKRLPSVIKDNKADMGNQKQGGKNKSEQPERSKESEEQEEEEVVCRGKESCREYIKSFLAAIPIQQVKADMKKGLVSSLHHRLQIELHYTKHLHHHQPNMFESSATEVTVSEAAVSVTVAWSLASQFSNSGGFSCEMAELLGVKV", "length": 782, "header": "tr|Q9FMC4-1|Q9FMC4_ARATH Isoform 1 of Splicing factor 3A subunit OS=Arabidopsis thaliana OX=3702 GN=MUK11.18 PE=1 SV=1 CANONICAL=Q9FMC4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BBH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBH2/entry", "sequence": { "sequence": "MKEDDVQVKVPLKDCDSSSVRSPHVHISLQFSPKESLPERQRSALPVLWSPLSAEAEKAESVVKVGLRKMKTFNNCMSSTQASEKESEKDGSSGSGSDGKSPERNLDSDSSYPFDTDSLDEGDAADESEENKENESSLADPVNYKTLRSANWARGSFHTVTNPEDEDLIYYSHRSPLAETGHCSDEVSNDVVSLEQAKGQMSKKRMLSWKKRKLSFRSPKQKGEPLLKKDCLEEGGDDIDFDRRQLSSSDESNSDWYRSDDAIMKPLSQFGDDDFVVGSWETKEIISRDGLMKLTARVFLASIDQRSERAAGESACTALVAVMAHWLGSNRDIIPTRSEFDSLIREGSSEWRNMCENEEYRERFPDKHFDLETVLQAKVRPICVVPERSFIGFFHPEKSEEEEGKEDASLDFLKGVMSFDSIWEELMKQEPEESASEPVIYIVSWNDHFFVLLVNHDAYYIIDTLGERLYEGCNQAYVLKFDKDAEIKRLPSVIKDNKADMGNQKQGGKNKSEQPERSKESEEQEEEEVVCRGKESCREYIKSFLAAIPIQQVKADMKKGLVSSLHHRLQIELHYTKHLHHHQPNMFESSATEVTVSEAAVSVTVAWSLASQFSNSGGFSCEMAELLGVKV", "length": 631, "header": "tr|A0A1P8BBH2-1|Q9FMC4_ARATH Computationally mapped isoform of Splicing factor 3A subunit OS=Arabidopsis thaliana OX=3702 GN=MUK11.18 PE=1 SV=1 CANONICAL=Q9FMC4-1" }, "locus": { "chromosome": "5", "start_pos": 1411549, "end_pos": 1413972, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G04860.2", "url": "https://www.ensemblgenomes.org/id/AT5G04860.2" }, { "database": "Ensembl Peptide", "id": "AT5G04860.2", "url": "https://www.ensemblgenomes.org/id/AT5G04860.2" } ] } }, { "isoform_ac": "Q9FMC4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMC4/entry", "sequence": { "sequence": "MVVKMKQIMRWPPWPPLFAVKFDVIVVVHQMDGLLDSDGGGDDSTDQSQRGGGTTTRKRPVVEIKWKGPKSVTLKRSVVRNLTEEGGFRGDGVVEWNEEFKRVCEFSVYKEGSFLPWFVSLTVFSGLNQGSKEKVRSFGKASLNIAEYFSLMKEDDVQVKVPLKDCDSSSVRSPHVHISLQFSPKESLPERQRSALPVLWSPLSAEAEKAESVVKVGLRKMKTFNNCMSSTQASEKESEKDGSSGSGSDGKSPERNLDSDSSYPFDTDSLDEGDAADESEENKENESSLADPVNYKTLRSANWARGSFHTVTNPEDEDLIYYSHRSPLAETGHCSDEVSNDVVSLEQAKGQMSKKRMLSWKKRKLSFRSPKQKGEPLLKKDCLEEGGDDIDFDRRQLSSSDESNSDWYRSDDAIMKPLSQFGDDDFVVGSWETKEIISRDGLMKLTARVFLASIDQRSERAAGESACTALVAVMAHWLGSNRDIIPTRSEFDSLIREGSSEWRNMCENEEYRERFPDKHFDLETVLQAKVRPICVVPERSFIGFFHPEKSEEEEGKEDASLDFLKGVMSFDSIWEELMKQEPEESASEPVIYIVSWNDHFFVLLVNHDAYYIIDTLGERLYEGCNQAYVLKFDKDAEIKRLPSVIKDNKADMGNQKQGGKNKSEQPERSKESEEQEEEEVVCRGKESCREYIKSFLAAIPIQQVKADMKKGLVSSLHHRLQIELHYTKHLHHHQPNMFESSATEVTVSEAAVSVTVAWSLASQFSNSGGFSCEMAELLGVKV", "length": 782, "header": "tr|Q9FMC4-1|Q9FMC4_ARATH Isoform 1 of Splicing factor 3A subunit OS=Arabidopsis thaliana OX=3702 GN=MUK11.18 PE=1 SV=1 CANONICAL=Q9FMC4-1" }, "locus": { "chromosome": "5", "start_pos": 1411553, "end_pos": 1414722, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G04860.1", "url": "https://www.ensemblgenomes.org/id/AT5G04860.1" }, { "database": "Ensembl Peptide", "id": "AT5G04860.1", "url": "https://www.ensemblgenomes.org/id/AT5G04860.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BBH2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBH2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BBH2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBH2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G04860", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G04860", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FMC4", "url": "https://www.uniprot.org/uniprotkb/Q9FMC4" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FMC4", "url": "https://www.uniprot.org/uniprotkb/Q9FMC4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 661, "end_pos": 663, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FMC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMC4" }, { "id": "PS51840", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51840" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2 NT-type", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 184, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 285, "end_pos": 287 }, { "start_pos": 661, "end_pos": 663 }, { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FKR7-1", "uniprot_ac": "Q9FKR7", "uniprot_id": "Q9FKR7_ARATH", "mass": { "chemical_mass": 124315.0, "monoisotopic_mass": 124315.0 }, "refseq": { "ac": "NP_001318718", "name": "Disease resistance protein (TIR-NBS-LRR class) family", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318718" }, "gene_names": [ { "name": "MHK7.14", "type": "recommended", "evidence": [ { "id": "Q9FKR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7" } ] }, { "name": "MHK7.14", "type": "synonym", "evidence": [ { "id": "NP_001318718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318718" } ] }, { "name": "MHK7_14", "type": "synonym", "evidence": [ { "id": "NP_001318718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318718" }, { "id": "Q9FKR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7" } ] } ], "protein_names": [ { "name": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase", "type": "recommended", "evidence": [ { "id": "Q9FKR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7/entry#names_and_taxonomy" } ] }, { "name": "3.2.2.6", "type": "synonym", "evidence": [ { "id": "Q9FKR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7/entry#names_and_taxonomy" } ] }, { "name": "Disease resistance protein (TIR-NBS-LRR class) family", "type": "synonym", "evidence": [ { "id": "NP_001318718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318718" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKR7", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MHK7.14", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7", "locus": {} } ], "crossref": [ { "id": "AT5G40910", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G40910", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834092", "url": "https://www.ncbi.nlm.nih.gov/gene/834092", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011713", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011713", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G40910", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G40910", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DVEIMEC", "url": "https://omabrowser.org/oma/group/DVEIMEC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017:SF542", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017:SF542", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07725", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07725", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001318718", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318718", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16301", "url": "https://www.rhea-db.org/rhea/16301", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT5G40910", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G40910", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BBS3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BBS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BBT0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BBT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBT0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FKR7", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FKR7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFSSPSDFKRYHVFSSFHGPDVRSGFLSHLHNHFESKGITPFKDQEIERGHTIGPELIQAIRESRVSIVVLSEKYASSCWCLDELVEILKCKEASGQVVMTIFYKVDPSDVRKQRGDFGSTFKKTCEGKTWIVKQRWIKALEYIATVAGEHSLSWANEAELIQKIATDVSNKLNLTPSRDFEGMVGLEAHLTKLDSFLCLESDDVKMIGIWGPAGIGKTTIARALFNQLSTGFRLSCFMGTIDVNDYDSKLCLQNKLLSKILNQKDMKIHHLGAIEEWLHNQRVLIVLDDVDDLEQLEVLAKESSWFGHGSRIIVSLNDRKILKAHGINDIYDVDFPSEEEALEILCLSAFKQNSPQDGFEEVAKRVVELCGKLPLGLRVVGSSFYGESEDEWRIQLYGIETNLDRKIENVLRVGYDKLSERHQSLFLHIACFFNHKSVDYVTTMLADSTLDVENGLKTLAAKSLVSTNGWITMHCLLQQLGRQVVVQQGDPGKRQFLVEAKEIRDVLANETGTESVIGISFDISKIETLSISKRAFNRMRNLKFLNFYNGSVSLLEDMEYLPRLRLLYWGSYPRKSLPLTFKPECLVELYMGFSKLEKLWGGIQPLTNLKKINLGYSSNLKEIPNLSKATNLKTLTLTGCESLVEIPSSIWNLQKLEMLYASGCIKLQVIPTNINLASLEEVNMSNCSRLRSFPDISSNIKRLYVAGTMIKEFPASIVGHWCRLDFLQIGSRSLKRLTHVPESVTHLDLRNSDIKMIPDCVIGLPHLVSLLVENCTKLVSIQGHSPSLVTLFADHCISLKSVCCSFHGPISKLMFYNCLKLDKESKRGIIQQSGNKSICLPGKEIPAEFTHQTIGNLITISLAPGCEEAYSTFSRFKACLLLSPIKNFAFNKINCFLRSKGVEISRTTESIYPFVSGGSLSEHLFIFCGDLFPEENRSLMDVTPNEILFDFSSSDVEIVECGVKIFLSSGIEVGYCETGGNRNHHIDGEAEAFKVTQVENSKHTGHWSWLRKLRLGKKKMKNNKTELSSRPVSGFSDLTRGIFIRYQEPEAVELTKDERITDLSSLLCIGSLVVCFFLSVFFGQPLVVSVLLLFSCFFLQMQ", "length": 1104, "header": "tr|Q9FKR7-1|Q9FKR7_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=MHK7.14 PE=4 SV=1 CANONICAL=Q9FKR7-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BBS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBS3/entry", "sequence": { "sequence": "MVGLEAHLTKLDSFLCLESDDVKMIGIWGPAGIGKTTIARALFNQLSTGFRLSCFMGTIDVNDYDSKLCLQNKLLSKILNQKDMKIHHLGAIEEWLHNQRVLIVLDDVDDLEQLEVLAKESSWFGHGSRIIVSLNDRKILKAHGINDIYDVDFPSEEEALEILCLSAFKQNSPQDGFEEVAKRVVELCGKLPLGLRVVGSSFYGESEDEWRIQLYGIETNLDRKIENVLRVGYDKLSERHQSLFLHIACFFNHKSVDYVTTMLADSTLDVENGLKTLAAKSLVSTNGWITMHCLLQQLGRQVVVQQGDPGKRQFLVEAKEIRDVLANETGTESVIGISFDISKIETLSISKRAFNRMRNLKFLNFYNGSVSLLEDMEYLPRLRLLYWGSYPRKSLPLTFKPECLVELYMGFSKLEKLWGGIQPLTNLKKINLGYSSNLKEIPNLSKATNLKTLTLTGCESLVEIPSSIWNLQKLEMLYASGCIKLQVIPTNINLASLEEVNMSNCSRLRSFPDISSNIKRLYVAGTMIKEFPASIVGHWCRLDFLQIGSRSLKRLTHVPESVTHLDLRNSDIKMIPDCVIGLPHLVSLLVENCTKLVSIQGHSPSLVTLFADHCISLKSVCCSFHGPISKLMFYNCLKLDKESKRGIIQQSGNKSICLPGCEEAYSTFSRFKACLLLSPIKNFAFNKINCFLRSKGVEISRTTESIYPFVSGGSLSEHLFIFCGDLFPEENRSLMDVTPNEILFDFSSSDVEIVECGVKIFLSSGIEVGYCETGGNRNHHIDGEAEAFKVTQVENSKHTGHWSWLRKLRLGKKKMKNNKTELSSRPVSGFSDLTRGIFIRYQEPEAVELTKDERITDLSSLLCIGSLVVCFFLSVFFGQPLVVSVLLLFSCFFLQMQ", "length": 897, "header": "tr|A0A1P8BBS3-1|Q9FKR7_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=MHK7.14 PE=4 SV=1 CANONICAL=Q9FKR7-1" }, "locus": { "chromosome": "5", "start_pos": 16394502, "end_pos": 16399129, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G40910.4", "url": "https://www.ensemblgenomes.org/id/AT5G40910.4" }, { "database": "Ensembl Peptide", "id": "AT5G40910.4", "url": "https://www.ensemblgenomes.org/id/AT5G40910.4" } ] } }, { "isoform_ac": "A0A1P8BBT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBT0/entry", "sequence": { "sequence": "MVGLEAHLTKLDSFLCLESDDVKMIGIWGPAGIGKTTIARALFNQLSTGFRLSCFMGTIDVNDYDSKLCLQNKLLSKILNQKDMKIHHLGAIEEWLHNQRVLIVLDDVDDLEQLEVLAKESSWFGHGSRIIVSLNDRKILKAHGINDIYDVDFPSEEEALEILCLSAFKQNSPQDGFEEVAKRVVELCGKLPLGLRVVGSSFYGESEDEWRIQLYGIETNLDRKIENVLRVGYDKLSERHQSLFLHIACFFNHKSVDYVTTMLADSTLDVENGLKTLAAKSLVSTNGWITMHCLLQQLGRQVVVQQGDPGKRQFLVEAKEIRDVLANETGTESVIGISFDISKIETLSISKRAFNRMRNLKFLNFYNGSVSLLEDMEYLPRLRLLYWGSYPRKSLPLTFKPECLVELYMGFSKLEKLWGGIQPLTNLKKINLGYSSNLKEIPNLSKATNLKTLTLTGCESLVEIPSSIWNLQKLEMLYASGCIKLQVIPTNINLASLEEVNMSNCSRLRSFPDISSNIKRLYVAGTMIKEFPASIVGHWCRLDFLQIGSRSLKRLTHVPESVTHLDLRNSDIKMIPDCVIGLPHLVSLLVENCTKLVSIQGHSPSLVTLFADHCISLKSVCCSFHGPISKLMFYNCLKLDKESKRGIIQQSGNKSICLPGKEIPAEFTHQTIGNLITISLAPGCEEAYSTFSRFKACLLLSPIKNFAFNKINCFLRSKGVEISRTTESIYPFVSGGSLSEHLFIFCGDLFPEENRSLMDVTPNEILFDFSSSDVEIVECGVKIFLSSGIEVGYCETGGNRNHHIDGEAEAFKVTQVENSKHTGHWSWLRKLRLGKKKMKNNKTELSSRPVSGFSDLTRGIFIRYQEPEAVELTKDERITDLSSLLCIGSLVVCFFLSVFFGQPLVVSVLLLFSCFFLQMQ", "length": 920, "header": "tr|A0A1P8BBT0-1|Q9FKR7_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=MHK7.14 PE=4 SV=1 CANONICAL=Q9FKR7-1" }, "locus": { "chromosome": "5", "start_pos": 16395162, "end_pos": 16400465, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G40910.8", "url": "https://www.ensemblgenomes.org/id/AT5G40910.8" }, { "database": "Ensembl Peptide", "id": "AT5G40910.8", "url": "https://www.ensemblgenomes.org/id/AT5G40910.8" } ] } }, { "isoform_ac": "Q9FKR7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7/entry", "sequence": { "sequence": "MAFSSPSDFKRYHVFSSFHGPDVRSGFLSHLHNHFESKGITPFKDQEIERGHTIGPELIQAIRESRVSIVVLSEKYASSCWCLDELVEILKCKEASGQVVMTIFYKVDPSDVRKQRGDFGSTFKKTCEGKTWIVKQRWIKALEYIATVAGEHSLSWANEAELIQKIATDVSNKLNLTPSRDFEGMVGLEAHLTKLDSFLCLESDDVKMIGIWGPAGIGKTTIARALFNQLSTGFRLSCFMGTIDVNDYDSKLCLQNKLLSKILNQKDMKIHHLGAIEEWLHNQRVLIVLDDVDDLEQLEVLAKESSWFGHGSRIIVSLNDRKILKAHGINDIYDVDFPSEEEALEILCLSAFKQNSPQDGFEEVAKRVVELCGKLPLGLRVVGSSFYGESEDEWRIQLYGIETNLDRKIENVLRVGYDKLSERHQSLFLHIACFFNHKSVDYVTTMLADSTLDVENGLKTLAAKSLVSTNGWITMHCLLQQLGRQVVVQQGDPGKRQFLVEAKEIRDVLANETGTESVIGISFDISKIETLSISKRAFNRMRNLKFLNFYNGSVSLLEDMEYLPRLRLLYWGSYPRKSLPLTFKPECLVELYMGFSKLEKLWGGIQPLTNLKKINLGYSSNLKEIPNLSKATNLKTLTLTGCESLVEIPSSIWNLQKLEMLYASGCIKLQVIPTNINLASLEEVNMSNCSRLRSFPDISSNIKRLYVAGTMIKEFPASIVGHWCRLDFLQIGSRSLKRLTHVPESVTHLDLRNSDIKMIPDCVIGLPHLVSLLVENCTKLVSIQGHSPSLVTLFADHCISLKSVCCSFHGPISKLMFYNCLKLDKESKRGIIQQSGNKSICLPGKEIPAEFTHQTIGNLITISLAPGCEEAYSTFSRFKACLLLSPIKNFAFNKINCFLRSKGVEISRTTESIYPFVSGGSLSEHLFIFCGDLFPEENRSLMDVTPNEILFDFSSSDVEIVECGVKIFLSSGIEVGYCETGGNRNHHIDGEAEAFKVTQVENSKHTGHWSWLRKLRLGKKKMKNNKTELSSRPVSGFSDLTRGIFIRYQEPEAVELTKDERITDLSSLLCIGSLVVCFFLSVFFGQPLVVSVLLLFSCFFLQMQ", "length": 1104, "header": "tr|Q9FKR7-1|Q9FKR7_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=MHK7.14 PE=4 SV=1 CANONICAL=Q9FKR7-1" }, "locus": { "chromosome": "5", "start_pos": 16395507, "end_pos": 16399129, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G40910.9", "url": "https://www.ensemblgenomes.org/id/AT5G40910.9" }, { "database": "Ensembl Peptide", "id": "AT5G40910.9", "url": "https://www.ensemblgenomes.org/id/AT5G40910.9" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 7, "end_pos": 7, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKR7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKR7" } ], "site_lbl": "Ser7" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BBS3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBS3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BBS3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBS3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G40910", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G40910", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q9FKR7", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FKR7", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "Q9FKR7", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7" } ], "pmid": "" }, { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "Q9FKR7", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7" } ], "pmid": "" }, { "name": "NAD+ nucleosidase activity, cyclic ADP-ribose generating", "id": "GO:0061809", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061809", "evidence": [ { "database": "UniProtKB", "id": "Q9FKR7", "url": "https://www.uniprot.org/uniprotkb/Q9FKR7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1025, "end_pos": 1027, "annotation": "n_glycosylation_sequon" }, { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 511, "end_pos": 513, "annotation": "n_glycosylation_sequon" }, { "start_pos": 551, "end_pos": 553, "annotation": "n_glycosylation_sequon" }, { "start_pos": 627, "end_pos": 629, "annotation": "n_glycosylation_sequon" }, { "start_pos": 685, "end_pos": 687, "annotation": "n_glycosylation_sequon" }, { "start_pos": 688, "end_pos": 690, "annotation": "n_glycosylation_sequon" }, { "start_pos": 776, "end_pos": 778, "annotation": "n_glycosylation_sequon" }, { "start_pos": 837, "end_pos": 839, "annotation": "n_glycosylation_sequon" }, { "start_pos": 938, "end_pos": 940, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16301", "name": "", "equation": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "O23530-2", "O48573-1", "F4HT77-1", "F4I902-1", "F4J339-1", "F4JNA9-1", "F4KHI3-1", "Q0WSX8-1", "Q9XGM3-1", "Q9C5Q9-1", "Q9C7X0-1", "Q9FT77-1", "F4I594-1", "F4JNB7-1", "F4JT80-1", "F4JWM0-1", "F4KHH8-1", "F4KIF3-1", "Q9CAK1-1", "Q9FHF0-1", "Q9SZ66-1", "F4JT78-1", "F4JT82-1", "O49471-1", "O82500-1", "Q9FI14-1", "Q9SCZ2-1", "Q9LUJ8-1", "Q9SYC9-1", "A0A1P8AT27-1", "A0A1P8B6A5-1", "A0A1P8B6H3-1", "Q9SW60-1", "A0A1P8B9V7-1", "Q9FKM9-1", "A0A1P8BDK2-1", "F4KFY1-1", "Q9LFN1-1", "F4I270-1", "F4J359-1", "F4J361-1", "Q9FHE8-1", "Q9FHE9-1", "Q9FKB9-1", "Q9M0Q5-1", "F4IBL4-1", "Q9FH20-1", "Q9FF28-1", "Q9FKE2-1", "Q9FN83-1", "Q9M285-1", "F4IMF2-1", "F4KD45-1", "F4J910-1", "O65507-1", "Q9FHF6-1", "Q8LFT2-1", "Q9M8X8-1", "Q9CAK0-1", "Q9FKR7-1", "F4I901-1", "F4JNB2-1", "A0A1P8B8A2-1", "Q9FHF4-1", "Q9FHG0-1", "Q9CAD9-1", "F4JNB9-1", "F4JWL7-1", "F4JWL8-1", "F4JYI4-1", "F4KFY5-1", "F4I9F1-1", "Q9CAE0-1", "Q9CAD8-1", "Q9FFS5-1", "Q9FGT2-1", "Q9FJG4-1", "Q9FL35-1", "Q9FXA6-1", "Q9LSX5-1", "Q9ZVX6-1" ], "evidence": [ { "id": "16301", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16301" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A1P8AT27", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8AT27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AT27" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8AT27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AT27" } ] } ] }, { "uniprot_ac": "A0A1P8B6A5", "gene_name": "SIKIC1", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B6A5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6A5" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8B6A5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6A5" } ] } ] }, { "uniprot_ac": "A0A1P8B6H3", "gene_name": "DL4490C", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B6H3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6H3" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8B6H3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6H3" } ] } ] }, { "uniprot_ac": "A0A1P8B8A2", "gene_name": "DL3225C", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B8A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8A2" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8B8A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8A2" } ] } ] }, { "uniprot_ac": "A0A1P8B9V7", "gene_name": "MPL12.5", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B9V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9V7" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8B9V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9V7" } ] } ] }, { "uniprot_ac": "A0A1P8BDK2", "gene_name": "MDJ22.11", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8BDK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDK2" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8BDK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDK2" } ] } ] }, { "uniprot_ac": "F4HT77", "gene_name": "RBA1", "activity": [ { "ec_number": "3.2.2.-", "activity": "", "evidence": [ { "id": "F4HT77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HT77" } ] }, { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = 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"MMLSPTLTSHCSRLKCVSLHISKLKHLEDALFPACGALNRVELSGSSSGMKADNIDTASSSLPQVELDFRECFNLDPETVLHQESIIFKYMLFPGKEEVPSYFTYRTTGVSSLTIPLLHLPLSQPFFRFRVGALVTNVKHGKNIKVKCEFKDRFGNSFHVGSDDFYVYLLFTKSQKGSQMLTILDCCIPLNEGNASLAQGNYYDHVDINIHITESLGSFGSTSELKEWGIRLLEEDSSSAENQLGNPNSTLPHVSEAEEGNMGYYTPVQGLVNEIEHNGESGDNNVETERSTKHAAQRNYYDHVDIDIEQMDSDDDIEEWGRHLEDCHQRRIDMVIQTLCSMFVKPMKTMMDAIRLITTKSEETVMNSDIGRETDHFEECEDSDISNESDQSEERGDSDDDGINNETDLFEECGNSD", "length": 417, "header": "tr|Q9FHF5-1|Q9FHF5_ARATH Isoform 1 of Protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHF5-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BBU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBU6/entry", "sequence": { "sequence": "MMLSPTLTSHCSRLKCVSLHISKLKHLEDALFPACGALNRVELSGSSSGMKADNIDTASSSLPQVELDFRECFNLDPETVLHQESIIFKYMLFPGKEEVPSYFTYRTTGVSSLTIPLLHLPLSQPFFRFRVGALVTNVKHGKNIKVKCEFKDRFGNSFHVGSDDFYVYLLFTKSQKGSQMLTILDCCIPLNEGNASLAQGNYYDHVDINIHITESLGSFGSTSELKEWGIRLLEEDSSSAENQLGNPNSTLPHVSEAEEGNMGYYTPVQGLVNEIEHNGESGDNNVETERSTKHADIEQMDSDDDIEEWGRHLEDCHQRRIDMVIQTLCSMFVKPMKTMMDAIRLITTKSEETVMNSDIGRETDHFEECEDSDISNESDQSEERGDSDDDGINNETDLFEECGNSD", "length": 406, "header": "tr|A0A1P8BBU6-1|Q9FHF5_ARATH Computationally mapped isoform of Protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHF5-1" }, "locus": { "chromosome": "5", "start_pos": 18856454, "end_pos": 18857973, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46500.4", "url": "https://www.ensemblgenomes.org/id/AT5G46500.4" }, { "database": "Ensembl Peptide", "id": "AT5G46500.4", "url": "https://www.ensemblgenomes.org/id/AT5G46500.4" } ] } }, { "isoform_ac": "Q9FHF5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHF5/entry", "sequence": { "sequence": "MMLSPTLTSHCSRLKCVSLHISKLKHLEDALFPACGALNRVELSGSSSGMKADNIDTASSSLPQVELDFRECFNLDPETVLHQESIIFKYMLFPGKEEVPSYFTYRTTGVSSLTIPLLHLPLSQPFFRFRVGALVTNVKHGKNIKVKCEFKDRFGNSFHVGSDDFYVYLLFTKSQKGSQMLTILDCCIPLNEGNASLAQGNYYDHVDINIHITESLGSFGSTSELKEWGIRLLEEDSSSAENQLGNPNSTLPHVSEAEEGNMGYYTPVQGLVNEIEHNGESGDNNVETERSTKHAAQRNYYDHVDIDIEQMDSDDDIEEWGRHLEDCHQRRIDMVIQTLCSMFVKPMKTMMDAIRLITTKSEETVMNSDIGRETDHFEECEDSDISNESDQSEERGDSDDDGINNETDLFEECGNSD", "length": 417, "header": "tr|Q9FHF5-1|Q9FHF5_ARATH Isoform 1 of Protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHF5-1" }, "locus": { "chromosome": "5", "start_pos": 18856454, "end_pos": 18858477, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46500.1", "url": "https://www.ensemblgenomes.org/id/AT5G46500.1" }, { "database": "Ensembl Peptide", "id": "AT5G46500.1", "url": "https://www.ensemblgenomes.org/id/AT5G46500.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BBU6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBU6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BBU6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBU6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G46500", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46500", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" }, { "start_pos": 248, "end_pos": 250, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FHF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHF5" }, { "id": "PF20160", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20160" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C-JID", "eco_id": "ECO_0000259", "start_pos": 97, "end_pos": 236, "start_aa": "Glu", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 194, "end_pos": 196 }, { "start_pos": 248, "end_pos": 250 }, { "start_pos": 387, "end_pos": 389 }, { "start_pos": 405, "end_pos": 407 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FG75-1", "uniprot_ac": "Q9FG75", "uniprot_id": "Q9FG75_ARATH", "mass": { "chemical_mass": 45731.0, "monoisotopic_mass": 45731.0 }, "refseq": { "ac": "NP_200401", "name": "Sucrase/ferredoxin-like family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200401" }, "gene_names": [ { "name": "MYN21.1", "type": "recommended", "evidence": [ { "id": "Q9FG75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG75" } ] }, { "name": "MYN21.1", "type": "synonym", "evidence": [ { "id": "NP_200401", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200401" } ] }, { "name": "MYN21_1", "type": "synonym", "evidence": [ { "id": "NP_200401", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200401" }, { "id": "Q9FG75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG75" } ] } ], "protein_names": [ { "name": "Sucrase/ferredoxin-like family protein", "type": "synonym", "evidence": [ { "id": "NP_200401", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200401" }, { "id": "Q9FG75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG75/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FG75", "url": "https://www.uniprot.org/uniprotkb/Q9FG75" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MYN21.1", "url": "https://www.uniprot.org/uniprotkb/Q9FG75", "locus": {} } ], "crossref": [ { "id": "AT5G55900", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G55900", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd03062", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03062", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "835688", "url": "https://www.ncbi.nlm.nih.gov/gene/835688", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009737", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009737", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G55900", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G55900", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "REDIEMC", "url": "https://omabrowser.org/oma/group/REDIEMC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31902", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31902", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31902:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31902:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06999", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06999", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_200401", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200401", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G55900", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G55900", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BBY5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BBY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FG75", "url": "https://www.uniprot.org/uniprotkb/Q9FG75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FG75-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG75-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSGRYLDDPLTFTRNPPSSSSPITESSFLAESISRSGSFESGSLRGGDGDCFSDVDFALDKLAGTVQFYERHVFLCYKKPSVWPARIEASEFDRLPRLLSSVISARKSSMKKETLLTICEGHDGSETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKGVEWLPGNPESLSSSYVFVCCHGSRDRRCGVCGPSLVSRFREEIDSCGLRGEVSVSPCSHIGGHKYTGDVIIYGLNINQRVTGHWYGCVTLEDVPLLLEQHINKGEIVDRLWRGEMGLPEEDQKKTQEQRLQLNSEKISNREVTQESVNNSICCQSRAVPELNGSGCQQNGNSSYCLEEIHTEKNTSERVTSVKNASLRIGSSENGSSGGFKVCAVMSMWLETWEREDTYAALAVACAAASVAIAYNCYKQLK", "length": 413, "header": "tr|Q9FG75-1|Q9FG75_ARATH Isoform 1 of Sucrase/ferredoxin-like family protein OS=Arabidopsis thaliana OX=3702 GN=MYN21.1 PE=1 SV=1 CANONICAL=Q9FG75-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BBY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBY5/entry", "sequence": { "sequence": "MFFYLCVELQTLLTICEGHDGSETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKGVEWLPGNPESLSSSYVFVCCHGSRDRRCGVCGPSLVSRFREEIDSCGLRGEVSVSPCSHIGGHKYTGDVIIYGLNINQRVTGHWYGCVTLEDVPLLLEQHINKGEIVDRLWRGEMGLPEEDQKKTQEQRLQLNSEKISNREVTQESVNNSICCQSRAVPELNGSGCQQNGNSSYCLEEIHTEKNTSERVTSVKNASLRIGSSENGSSGGFKVCAVMSMWLETWEREDTYAALAVACAAASVAIAYNCYKQLK", "length": 309, "header": "tr|A0A1P8BBY5-1|Q9FG75_ARATH Computationally mapped isoform of Sucrase/ferredoxin-like family protein OS=Arabidopsis thaliana OX=3702 GN=MYN21.1 PE=1 SV=1 CANONICAL=Q9FG75-1" }, "locus": { "chromosome": "5", "start_pos": 22638385, "end_pos": 22639809, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G55900.2", "url": "https://www.ensemblgenomes.org/id/AT5G55900.2" }, { "database": "Ensembl Peptide", "id": "AT5G55900.2", "url": "https://www.ensemblgenomes.org/id/AT5G55900.2" } ] } }, { "isoform_ac": "Q9FG75-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG75/entry", "sequence": { "sequence": "MGSGRYLDDPLTFTRNPPSSSSPITESSFLAESISRSGSFESGSLRGGDGDCFSDVDFALDKLAGTVQFYERHVFLCYKKPSVWPARIEASEFDRLPRLLSSVISARKSSMKKETLLTICEGHDGSETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKGVEWLPGNPESLSSSYVFVCCHGSRDRRCGVCGPSLVSRFREEIDSCGLRGEVSVSPCSHIGGHKYTGDVIIYGLNINQRVTGHWYGCVTLEDVPLLLEQHINKGEIVDRLWRGEMGLPEEDQKKTQEQRLQLNSEKISNREVTQESVNNSICCQSRAVPELNGSGCQQNGNSSYCLEEIHTEKNTSERVTSVKNASLRIGSSENGSSGGFKVCAVMSMWLETWEREDTYAALAVACAAASVAIAYNCYKQLK", "length": 413, "header": "tr|Q9FG75-1|Q9FG75_ARATH Isoform 1 of Sucrase/ferredoxin-like family protein OS=Arabidopsis thaliana OX=3702 GN=MYN21.1 PE=1 SV=1 CANONICAL=Q9FG75-1" }, "locus": { "chromosome": "5", "start_pos": 22637510, "end_pos": 22639828, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G55900.1", "url": "https://www.ensemblgenomes.org/id/AT5G55900.1" }, { "database": "Ensembl Peptide", "id": "AT5G55900.1", "url": "https://www.ensemblgenomes.org/id/AT5G55900.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 37, "end_pos": 37, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FG75", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG75" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser37" }, { "start_pos": 39, "end_pos": 39, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FG75", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG75" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": 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Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BBY5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BBY5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9FG75", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG75" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9FG75", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG75" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": 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"tr|Q9FHN7-1|Q9FHN7_ARATH Isoform 1 of Auxin-responsive GH3 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9FHN7-1" }, "locus": { "chromosome": "5", "start_pos": 20907195, "end_pos": 20909533, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G51470.1", "url": "https://www.ensemblgenomes.org/id/AT5G51470.1" }, { "database": "Ensembl Peptide", "id": "AT5G51470.1", "url": "https://www.ensemblgenomes.org/id/AT5G51470.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la 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"MFKYNIKPKQINKNKEMGMMRSSRTMGLGHCMVYVVVLSAIAATVTSYPYSSPYSSPQTPHYNSPSHEHKSPKYAPHPKPYVYISPPPPSYYSPSPKVNYKSPPPPNVYNSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPPPYVYNSPPPPYYSPSPKIEYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYNSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYFSPSPKVEYKSPPPPYVYNSPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPQYYSPSPKVAYKSPPPPYVYSSPPPPYYSPSPKVAYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYHSPSPKVNYKSPPPPYVYSSHPPPYYSPSPKVNYKSPPPPYVYSSPPPPYYSPSPKVNYKSPPPPYVYSSPPPPYYSPSPMVDYKSTPPPYVYSFPPLPYYSPSPKVDYKSPPLPYVYSSPPPLYYSPSPKVHYKSPPPPYVYNSPPPPYYSPSPKVTYKSPPPPYVYKAPYY", "length": 689, "header": "tr|Q9FG06-1|Q9FG06_ARATH Isoform 1 of Proline-rich extensin-like family protein OS=Arabidopsis thaliana OX=3702 GN=EXT10 PE=4 SV=1 CANONICAL=Q9FG06-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BCU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCU9/entry", "sequence": { 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"Ensembl Transcript", "id": "AT5G06640.2", "url": "https://www.ensemblgenomes.org/id/AT5G06640.2" }, { "database": "Ensembl Peptide", "id": "AT5G06640.2", "url": "https://www.ensemblgenomes.org/id/AT5G06640.2" } ] } }, { "isoform_ac": "Q9FG06-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG06/entry", "sequence": { "sequence": "MFKYNIKPKQINKNKEMGMMRSSRTMGLGHCMVYVVVLSAIAATVTSYPYSSPYSSPQTPHYNSPSHEHKSPKYAPHPKPYVYISPPPPSYYSPSPKVNYKSPPPPNVYNSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPPPYVYNSPPPPYYSPSPKIEYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYNSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYFSPSPKVEYKSPPPPYVYNSPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPQYYSPSPKVAYKSPPPPYVYSSPPPPYYSPSPKVAYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYHSPSPKVNYKSPPPPYVYSSHPPPYYSPSPKVNYKSPPPPYVYSSPPPPYYSPSPKVNYKSPPPPYVYSSPPPPYYSPSPMVDYKSTPPPYVYSFPPLPYYSPSPKVDYKSPPLPYVYSSPPPLYYSPSPKVHYKSPPPPYVYNSPPPPYYSPSPKVTYKSPPPPYVYKAPYY", "length": 689, "header": "tr|Q9FG06-1|Q9FG06_ARATH Isoform 1 of Proline-rich extensin-like family protein OS=Arabidopsis thaliana OX=3702 GN=EXT10 PE=4 SV=1 CANONICAL=Q9FG06-1" }, "locus": { "chromosome": "5", "start_pos": 2039641, "end_pos": 2041928, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06640.1", "url": "https://www.ensemblgenomes.org/id/AT5G06640.1" }, { "database": "Ensembl Peptide", "id": "AT5G06640.1", "url": "https://www.ensemblgenomes.org/id/AT5G06640.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 120, "end_pos": 120, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FG06", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG06" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser120" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, 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Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BCU9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCU9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FG06", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG06" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": 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"database": "Ensembl Peptide", "id": "AT5G44490.1", "url": "https://www.ensemblgenomes.org/id/AT5G44490.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 262, "end_pos": 262, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FI16", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FI16" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser262" }, { "start_pos": 264, "end_pos": 264, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FI16", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FI16" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser264" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. IX. Sequence features of the regions of 1,011,550 bp covered by seventeen P1 and TAC clones.", "journal": "DNA Res.", "date": "1999", "authors": "Kaneko T, Katoh T, Sato S, Nakamura Y, Asamizu E, Kotani H, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FI16", "url": "https://www.uniprot.org/uniprotkb/Q9FI16" } ], "reference": [ { "type": "PubMed", "id": "10470850", "url": "https://glygen.org/publication/PubMed/10470850" } ] }, { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BCZ8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCZ8" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FI16", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FI16" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FI16", "url": "https://www.uniprot.org/uniprotkb/Q9FI16" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G44490", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G44490", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FI16", "url": "https://www.uniprot.org/uniprotkb/Q9FI16" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" }, { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" }, { "start_pos": 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"protein_names": [ { "name": "DUF577 domain-containing protein", "type": "recommended", "evidence": [ { "id": "Q9FG48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG48/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FG48", "url": "https://www.uniprot.org/uniprotkb/Q9FG48" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FG48", "locus": {} } ], "crossref": [ { "id": "AT5G37400", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G37400", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "833715", "url": "https://www.ncbi.nlm.nih.gov/gene/833715", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G37400", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YIATECK", "url": "https://omabrowser.org/oma/group/YIATECK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31861", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31861", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31861:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31861:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04510", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04510", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G37400", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G37400", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BD25", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BD25-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD25-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FG48", "url": "https://www.uniprot.org/uniprotkb/Q9FG48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FG48-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG48-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEESDSGETATAKISSLTLKSRAILATPSNEEIAIIVEQVYTPQESDEHKSARALFDFCVSTFPNCLTLKLLTVYRFSSDDDFRLRSICLLTETLKAQRFELSLVTLHEIKPLLISCLTMQNPKYCDSKIVRIIVSLVADKVGVWEEMSDCILSLVVNDPIRAFEVFIQLPSSLYGEFIYRFLQNFLDEVYKILLRPVEYEVEVWILALKSAVKMGILLMDSEMRFDLTRDILHIVWKCSLDVVWNDMEEEFLLNGLDSLEIFLVEDANKFKWNSDQCRFVAEFAFKISDIGKEAKEVAWKIYRMVTKLDKYVHNPAFEFSPFRNENKYLGVDDVCDLEDILDALSPVEIMRKVSVGQVPNRLREIAITRLYELFCDHTAGKGDISISEIREIQPLLISCLAEIGIPESTFKILCQVVFHVLHELSSYQEDNWFGLWDYIATESKTEFMKTVYIFQCLTMRLDDKEFVIHAINNLLPEIHRHLNPPRDLLVDENCWVLAFTGAFCAAIHLIEISSHAQYLKEIAYKMIDSVRELVGRGMEVELVRRAFINMESIVEKQYDCYTTSDYRFVKGLVWKLYAIKDISVETQCVLWRINVILEKVQEVKELPKSDLDWLNQPETLGN", "length": 623, "header": "tr|Q9FG48-1|Q9FG48_ARATH Isoform 1 of DUF577 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FG48-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BD25-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD25/entry", "sequence": { "sequence": "MAMEESDSGETATAKISSLTLKSRAILATPSNEEIAIIVEQVYTPQESDEHKSARALFDFCVSTFPNCLTLKLLTVYRFSSDDDFRLRSICLLTETLKAQRFELSLVTLHEIKPLLISCLTMQNPKYCDSKIVRIIVSLVADKVGVWEEMSDCILSLVVNDPIRAFEVFIQLPSSLYGEFIYRFLQNFLDEVYKILLRPVEYEVEVWILALKSAVKMGILLMDSEMRFDLTRDILHIVWKCSLDVVWNDMEEEFLLNGLDSLEIFLVEDANKFKWNSDQCRFVAEFAFKISDIGKEAKEVAWKIYRMVTKLDKYVHNPAFEFSPFRNENKYLGVDDVCDLEDILDALSPVEIMRKVSVGQVPNRLREIAITRLYELFCDHTAGKGDISISEIREIQPLLISCLAEIGIPESTFKILCQVVFHVLHELSSYQEDNWFGLWDYIATESKTEFMKTVYIFQCLTMRLDDKEFVIHAINNLLPEIHRHLNPPRDLLVDENCWVLAFTGAFCAAIHLIEISSHAQYLKEIAYKMIDSVRELVGRGMEVELVRRAFINMESIVEKQYDCYTTSDYRFVKGLVWKLYAIKDISVETQCVLWRINVILEKVQEVKELPKSDLDWLNQPETLGN", "length": 625, "header": "tr|A0A1P8BD25-1|Q9FG48_ARATH Computationally mapped isoform of DUF577 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FG48-1" }, "locus": { "chromosome": "5", "start_pos": 14834208, "end_pos": 14836408, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G37400.2", "url": "https://www.ensemblgenomes.org/id/AT5G37400.2" }, { "database": "Ensembl Peptide", "id": "AT5G37400.2", "url": "https://www.ensemblgenomes.org/id/AT5G37400.2" } ] } }, { "isoform_ac": "Q9FG48-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG48/entry", "sequence": { "sequence": "MEESDSGETATAKISSLTLKSRAILATPSNEEIAIIVEQVYTPQESDEHKSARALFDFCVSTFPNCLTLKLLTVYRFSSDDDFRLRSICLLTETLKAQRFELSLVTLHEIKPLLISCLTMQNPKYCDSKIVRIIVSLVADKVGVWEEMSDCILSLVVNDPIRAFEVFIQLPSSLYGEFIYRFLQNFLDEVYKILLRPVEYEVEVWILALKSAVKMGILLMDSEMRFDLTRDILHIVWKCSLDVVWNDMEEEFLLNGLDSLEIFLVEDANKFKWNSDQCRFVAEFAFKISDIGKEAKEVAWKIYRMVTKLDKYVHNPAFEFSPFRNENKYLGVDDVCDLEDILDALSPVEIMRKVSVGQVPNRLREIAITRLYELFCDHTAGKGDISISEIREIQPLLISCLAEIGIPESTFKILCQVVFHVLHELSSYQEDNWFGLWDYIATESKTEFMKTVYIFQCLTMRLDDKEFVIHAINNLLPEIHRHLNPPRDLLVDENCWVLAFTGAFCAAIHLIEISSHAQYLKEIAYKMIDSVRELVGRGMEVELVRRAFINMESIVEKQYDCYTTSDYRFVKGLVWKLYAIKDISVETQCVLWRINVILEKVQEVKELPKSDLDWLNQPETLGN", "length": 623, "header": "tr|Q9FG48-1|Q9FG48_ARATH Isoform 1 of DUF577 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FG48-1" }, "locus": { "chromosome": "5", "start_pos": 14834343, "end_pos": 14836346, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G37400.1", "url": "https://www.ensemblgenomes.org/id/AT5G37400.1" }, { "database": "Ensembl Peptide", "id": "AT5G37400.1", "url": "https://www.ensemblgenomes.org/id/AT5G37400.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 27, "start_aa": "Thr", "end_pos": 27, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr27", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BD25", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD25" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BD25", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD25" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G37400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37400", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FG48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG48" }, { "id": "PF04510", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04510" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF577", "eco_id": "ECO_0000259", "start_pos": 107, "end_pos": 274, "start_aa": "Leu", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 27 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FGE1-1", "uniprot_ac": "Q9FGE1", "uniprot_id": "Q9FGE1_ARATH", "mass": { "chemical_mass": 33736.0, "monoisotopic_mass": 33736.0 }, "refseq": {}, "gene_names": [ { "name": "T32G24.1", "type": "synonym", "evidence": [ { "id": "Q9FGE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGE1" } ] }, { "name": "T32G24_1", "type": "synonym", "evidence": [ { "id": "Q9FGE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGE1" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "Q9FGE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGE1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGE1", "url": "https://www.uniprot.org/uniprotkb/Q9FGE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FGE1", "locus": {} } ], "crossref": [ { "id": "AT5G23380", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G23380", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "832402", "url": "https://www.ncbi.nlm.nih.gov/gene/832402", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008507", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008507", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G23380", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G23380", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SACFITY", "url": "https://omabrowser.org/oma/group/SACFITY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31343", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31343", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31343:SF50", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31343:SF50", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05623", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05623", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G23380", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G23380", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BD57", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BD57-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FGE1", "url": "https://www.uniprot.org/uniprotkb/Q9FGE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FGE1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGE1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNGRVRTNFERFLECSSPRVPIQFYTQARGSSSSSPIALGAIEEEEVRKPRIVLNDIWSACKNWSTVGIEVPLSLENFDSDVKQYYNPSLSAIQIFTIKPFSDDSRSSAIGIDGTETGSAITDSDSNGKLQCLDAGDLGYLYFQYNEVERPFDRFPLTFKMADLAEEHTGLSSLTSSDLSPNSWISIAWYPIYPIPPVIGVDGISAAFLTYHLLKPNFPETIGKDDKGNEQGESSTPEVLLPPFGAMTYKAFGNLWMMPGTSDYQNREMNEESADSWLRKRGFSHSDFNFFMSRKFYGGPY", "length": 301, "header": "tr|Q9FGE1-1|Q9FGE1_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FGE1-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BD57-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD57/entry", "sequence": { "sequence": "MNGRVRTNFERFLECSSPRVPIQFYTQARGSSSSSPIALGAIEEEEVRKPRIVLNDIWSACKNWSTVGIEVPLSLENFDSDVKQYYNPSLSAIQIFTIKPFSDDSRSSAIGIDGTETGSAITDSDSNGKLQCLDAGDLGYLYFQYNEVERPFDRFPLTFKMADLAEEHTGLSSLTSSDLSPNSWISIAWYPIYPIPPVIGVDGISAAFLTYHLLKPNFPGTLVI", "length": 224, "header": "tr|A0A1P8BD57-1|Q9FGE1_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FGE1-1" }, "locus": { "chromosome": "5", "start_pos": 7866742, "end_pos": 7870302, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G23380.2", "url": "https://www.ensemblgenomes.org/id/AT5G23380.2" }, { "database": "Ensembl Peptide", "id": "AT5G23380.2", "url": "https://www.ensemblgenomes.org/id/AT5G23380.2" } ] } }, { "isoform_ac": "Q9FGE1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGE1/entry", "sequence": { "sequence": "MNGRVRTNFERFLECSSPRVPIQFYTQARGSSSSSPIALGAIEEEEVRKPRIVLNDIWSACKNWSTVGIEVPLSLENFDSDVKQYYNPSLSAIQIFTIKPFSDDSRSSAIGIDGTETGSAITDSDSNGKLQCLDAGDLGYLYFQYNEVERPFDRFPLTFKMADLAEEHTGLSSLTSSDLSPNSWISIAWYPIYPIPPVIGVDGISAAFLTYHLLKPNFPETIGKDDKGNEQGESSTPEVLLPPFGAMTYKAFGNLWMMPGTSDYQNREMNEESADSWLRKRGFSHSDFNFFMSRKFYGGPY", "length": 301, "header": "tr|Q9FGE1-1|Q9FGE1_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FGE1-1" }, "locus": { "chromosome": "5", "start_pos": 7866742, "end_pos": 7870384, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G23380.1", "url": "https://www.ensemblgenomes.org/id/AT5G23380.1" }, { "database": "Ensembl Peptide", "id": "AT5G23380.1", "url": "https://www.ensemblgenomes.org/id/AT5G23380.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BD57", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD57" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BD57", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BD57" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G23380", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G23380", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FGE1", "url": "https://www.uniprot.org/uniprotkb/Q9FGE1" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FGE1", "url": "https://www.uniprot.org/uniprotkb/Q9FGE1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"type": "synonym", "evidence": [ { "id": "NP_199463", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199463" } ] } ], "protein_names": [ { "name": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase", "type": "recommended", "evidence": [ { "id": "Q9FHF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHF4/entry#names_and_taxonomy" } ] }, { "name": "3.2.2.6", "type": "synonym", "evidence": [ { "id": "Q9FHF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHF4/entry#names_and_taxonomy" } ] }, { "name": "Disease resistance protein (TIR-NBS-LRR class) family", "type": "synonym", "evidence": [ { "id": "NP_199463", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199463" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FHF4", "url": "https://www.uniprot.org/uniprotkb/Q9FHF4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "VICTL", "url": "https://www.uniprot.org/uniprotkb/Q9FHF4", "locus": {} } ], "crossref": [ { "id": "AT5G46510", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G46510", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd02019", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02019", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "834694", "url": "https://www.ncbi.nlm.nih.gov/gene/834694", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011713", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011713", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042197", "url": 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07725", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07725", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199463", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199463", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16301", "url": "https://www.rhea-db.org/rhea/16301", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT5G46510", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G46510", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BDG8", "url": 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"length": 1353, "header": "tr|Q9FHF4-1|Q9FHF4_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=VICTL PE=4 SV=1 CANONICAL=Q9FHF4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BDG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDG8/entry", "sequence": { "sequence": "MASSRNWVYDVFPSFSGTDVRRNFLSHLLKGLHKSVNSFRDQNMERSQSLDPMLKQAIRDSRIALVVFSKNYASSSWCLNELLEIVKCKEEFGQMVIPIFYCLDPSHVRHQDGDFGKNFEETCGRNTEEEKIQWEKALTDVANLAGFDSVTWDDEAKMIEEIANDVSGKLLSTSSTDSAENSIGIEDHIANMSVLLQLEAEEVRMVGIWGSSGIGKTTIARALFNQLSRHFPVSKFIDRAFVYKSRETYKGANPDDPNMKLHLQGCFLSEILGKKDIKIDHLGALGERLKHQKTLIIIDDLDDLVVLDSLVGKTNWFGCGSRIIVITNNKQFLRAHGIDHIYEVSLPSKERAQEMFCQSAFGENSPPEGFEELVVEIAWLAGSLPLGLTVFGSALRGRKKEYWVKMLPRLQNDLDGNIEETLKVSYDAIGNVKDQALFRLIACLFNHVKVRDIELLLADSGLDVNIALENLVDKSLIHVRNDHVEMHRLLQETGRNIVRSQSTDNPGEREFLVDSNDSRTVLSEGIGTRKVLGISLDTSKVSEFCVHENAFKGMGNLLFLDISSKTFIEEEVKVHLPEKINYYSVQPKQLIWDRFPLKCMPYTFLRNLVKLEMHDSKLEKLWEGAMSFTCLKELDMWASKYLKEIPDLSKATNIEKLDFGHCWSLVELPSSIRNLNKLLELNMEYCGELETLPTGFNLKSLDYLNFNECWKLRTFPEFATNISNLILAETSIEEYPSNLYFKNVRELSMGKADSDENKCQGVKPFMPMLSPTLTLLELWNIPNLVELSSSFQNLNNLERLDICYCRNLESLPTGINLESLVSLNLFGCSRLKRFPDISTNIKYLDLDQTGIEEVPWQIENFFNLTKLTMKGCRELKCVSLNIFKLKHLGEVSFSNCGALTRVDLSCYPSGVEMMKADNADIVSEETTSSLPDSCVLNVNFMDCVNLDREPVLHQQSIIFNSMILPGEEVPSYFTYRTSDSQPFGTSSSLPIPLLPTQLSQPFFRFRVCAVVSASNGVYIGVYSRFKGRIGNKFDSFGELHKFMEIEKGIHLCIFDCRIRLYKDNVPLSQLNYDHVDINIHITSGDWRSTVVLKEWGIRLLEDCSSAENRLGNPNSTLPHVCVEDEENLVNGTEQGDRGDVVTETSSKQNEDVILLQRSADSMFSRMSGKEMISYFTHRTTGTSLTNIPLPHTSPSQPFFRFKAFAVVGCKSSGQFSYFVTHISCRFKDGFENQPRRLYKAENGNHLDIYECSFPLYQGNASPAEMNYDRVDIQLHLRYRSDSTVRLIVWGIRLIEDCSSSENQLGYLNTL", "length": 1310, "header": "tr|A0A1P8BDG8-1|Q9FHF4_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=VICTL PE=4 SV=1 CANONICAL=Q9FHF4-1" }, "locus": { "chromosome": "5", "start_pos": 18860234, "end_pos": 18867015, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46510.2", "url": "https://www.ensemblgenomes.org/id/AT5G46510.2" }, { "database": "Ensembl Peptide", "id": "AT5G46510.2", "url": "https://www.ensemblgenomes.org/id/AT5G46510.2" } ] } }, { "isoform_ac": "Q9FHF4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHF4/entry", "sequence": { "sequence": "MASSRNWVYDVFPSFSGTDVRRNFLSHLLKGLHKSVNSFRDQNMERSQSLDPMLKQAIRDSRIALVVFSKNYASSSWCLNELLEIVKCKEEFGQMVIPIFYCLDPSHVRHQDGDFGKNFEETCGRNTEEEKIQWEKALTDVANLAGFDSVTWDDEAKMIEEIANDVSGKLLSTSSTDSAENSIGIEDHIANMSVLLQLEAEEVRMVGIWGSSGIGKTTIARALFNQLSRHFPVSKFIDRAFVYKSRETYKGANPDDPNMKLHLQGCFLSEILGKKDIKIDHLGALGERLKHQKTLIIIDDLDDLVVLDSLVGKTNWFGCGSRIIVITNNKQFLRAHGIDHIYEVSLPSKERAQEMFCQSAFGENSPPEGFEELVVEIAWLAGSLPLGLTVFGSALRGRKKEYWVKMLPRLQNDLDGNIEETLKVSYDAIGNVKDQALFRLIACLFNHVKVRDIELLLADSGLDVNIALENLVDKSLIHVRNDHVEMHRLLQETGRNIVRSQSTDNPGEREFLVDSNDSRTVLSEGIGTRKVLGISLDTSKVSEFCVHENAFKGMGNLLFLDISSKTFIEEEVKVHLPEKINYYSVQPKQLIWDRFPLKCMPYTFLRNLVKLEMHDSKLEKLWEGAMSFTCLKELDMWASKYLKEIPDLSKATNIEKLDFGHCWSLVELPSSIRNLNKLLELNMEYCGELETLPTGFNLKSLDYLNFNECWKLRTFPEFATNISNLILAETSIEEYPSNLYFKNVRELSMGKADSDENKCQGVKPFMPMLSPTLTLLELWNIPNLVELSSSFQNLNNLERLDICYCRNLESLPTGINLESLVSLNLFGCSRLKRFPDISTNIKYLDLDQTGIEEVPWQIENFFNLTKLTMKGCRELKCVSLNIFKLKHLGEVSFSNCGALTRVDLSCYPSGVEMMKADNADIVSEETTSSLPDSCVLNVNFMDCVNLDREPVLHQQSIIFNSMILPGEEVPSYFTYRTSDSQPFGTSSSLPIPLLPTQLSQPFFRFRVCAVVSASNGVYIGVYSRFKGRIGNKFDSFGELHKFMEIEKGIHLCIFDCRIRLYKDNVPLSQLNYDHVDINIHITSGDWRSTVVLKEWGIRLLEDCSSAENRLGNPNSTLPHVCVEDEENLVNGTEQGDRGDVVTETSSKQNEDVILLQRSADSMFSRMSGKEMISYFTHRTTGTSLTNIPLPHTSPSQPFFRFKAFAVVGCKSSGQFSYFVTHISCRFKDGFENQPRRLYKAENGNHLDIYECSFPLYQGNASPAEMNYDRVDIQLHLRYRSDSTVRLIVWGIRLIEDCSSSENQLDSETDQFEECGNSDIGHEIDQSEECEDMDDTGGICIGIDQSEERGDSDE", "length": 1353, "header": "tr|Q9FHF4-1|Q9FHF4_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=VICTL PE=4 SV=1 CANONICAL=Q9FHF4-1" }, "locus": { "chromosome": "5", "start_pos": 18860451, "end_pos": 18867013, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46510.1", "url": "https://www.ensemblgenomes.org/id/AT5G46510.1" }, { "database": "Ensembl Peptide", "id": "AT5G46510.1", "url": "https://www.ensemblgenomes.org/id/AT5G46510.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1105, "end_pos": 1105, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHF4" } ], "site_lbl": "Ser1105" }, { "start_pos": 47, "end_pos": 47, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHF4" } ], "site_lbl": "Ser47" }, { "start_pos": 49, "end_pos": 49, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHF4" } ], "site_lbl": "Ser49" }, { "start_pos": 839, "end_pos": 839, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHF4" } ], "site_lbl": "Thr839" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BDG8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDG8" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BDG8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDG8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G46510", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46510", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q9FHF4", "url": "https://www.uniprot.org/uniprotkb/Q9FHF4" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FHF4", "url": "https://www.uniprot.org/uniprotkb/Q9FHF4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "Q9FHF4", "url": "https://www.uniprot.org/uniprotkb/Q9FHF4" } ], "pmid": "" }, { "name": "NAD+ nucleosidase activity, cyclic ADP-ribose generating", "id": "GO:0061809", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061809", "evidence": [ { "database": "UniProtKB", "id": "Q9FHF4", "url": "https://www.uniprot.org/uniprotkb/Q9FHF4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FHF4", "url": "https://www.uniprot.org/uniprotkb/Q9FHF4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "Q9FHF4", "url": "https://www.uniprot.org/uniprotkb/Q9FHF4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1114, "end_pos": 1116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1130, "end_pos": 1132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1259, "end_pos": 1261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 516, "end_pos": 518, "annotation": "n_glycosylation_sequon" }, { "start_pos": 721, "end_pos": 723, "annotation": "n_glycosylation_sequon" }, { "start_pos": 863, "end_pos": 865, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16301", "name": "", "equation": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "O23530-2", "O48573-1", "F4HT77-1", "F4I902-1", "F4J339-1", "F4JNA9-1", "F4KHI3-1", "Q0WSX8-1", "Q9XGM3-1", "Q9C5Q9-1", "Q9C7X0-1", "Q9FT77-1", "F4I594-1", "F4JNB7-1", "F4JT80-1", "F4JWM0-1", "F4KHH8-1", "F4KIF3-1", "Q9CAK1-1", "Q9FHF0-1", "Q9SZ66-1", "F4JT78-1", "F4JT82-1", "O49471-1", "O82500-1", "Q9FI14-1", "Q9SCZ2-1", "Q9LUJ8-1", "Q9SYC9-1", "A0A1P8AT27-1", "A0A1P8B6A5-1", "A0A1P8B6H3-1", "Q9SW60-1", "A0A1P8B9V7-1", "Q9FKM9-1", "A0A1P8BDK2-1", "F4KFY1-1", "Q9LFN1-1", "F4I270-1", "F4J359-1", "F4J361-1", "Q9FHE8-1", "Q9FHE9-1", "Q9FKB9-1", "Q9M0Q5-1", "F4IBL4-1", "Q9FH20-1", "Q9FF28-1", "Q9FKE2-1", "Q9FN83-1", "Q9M285-1", "F4IMF2-1", "F4KD45-1", "F4J910-1", "O65507-1", "Q9FHF6-1", "Q8LFT2-1", "Q9M8X8-1", "Q9CAK0-1", "Q9FKR7-1", "F4I901-1", "F4JNB2-1", "A0A1P8B8A2-1", "Q9FHF4-1", "Q9FHG0-1", "Q9CAD9-1", "F4JNB9-1", "F4JWL7-1", "F4JWL8-1", "F4JYI4-1", "F4KFY5-1", "F4I9F1-1", "Q9CAE0-1", "Q9CAD8-1", "Q9FFS5-1", "Q9FGT2-1", "Q9FJG4-1", "Q9FL35-1", "Q9FXA6-1", "Q9LSX5-1", "Q9ZVX6-1" ], "evidence": [ { "id": "16301", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16301" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A1P8AT27", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8AT27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AT27" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8AT27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AT27" } ] } ] }, { "uniprot_ac": "A0A1P8B6A5", "gene_name": "SIKIC1", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B6A5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6A5" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8B6A5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6A5" } ] } ] }, { "uniprot_ac": "A0A1P8B6H3", "gene_name": "DL4490C", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B6H3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6H3" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8B6H3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6H3" } ] } ] }, { "uniprot_ac": "A0A1P8B8A2", "gene_name": "DL3225C", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B8A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8A2" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8B8A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8A2" } ] } ] }, { "uniprot_ac": "A0A1P8B9V7", "gene_name": "MPL12.5", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B9V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9V7" } ] }, { "ec_number": "3.2.2.6", 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0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FF08-1", "uniprot_ac": "Q9FF08", "uniprot_id": "Q9FF08_ARATH", "mass": { "chemical_mass": 167418.0, "monoisotopic_mass": 167418.0 }, "refseq": {}, "gene_names": [ { "name": "F13G24.140", "type": "synonym", "evidence": [ { "id": "Q9FF08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF08" } ] } ], "protein_names": [ { "name": "Dentin sialophosphoprotein-like protein", "type": "synonym", "evidence": [ { "id": "Q9FF08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF08/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FF08", "url": "https://www.uniprot.org/uniprotkb/Q9FF08" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FF08", "locus": {} } ], "crossref": [ { "id": "AT5G07940", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G07940", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "830688", "url": "https://www.ncbi.nlm.nih.gov/gene/830688", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G07940", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G07940", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "Q9FF08", "url": "https://oglcnac.org/atlas/detail/Q9FF08", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "NDCEMIT", "url": "https://omabrowser.org/oma/group/NDCEMIT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31267", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31267", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31267:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31267:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT5G07940", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G07940", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BDJ5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BDJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FF08", "url": "https://www.uniprot.org/uniprotkb/Q9FF08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FF08-1", "url": "https://www.uniprot.org/uniprotkb/Q9FF08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGNEFGEKIHNFFGQEGLSQDQQHQSQVVDRSWSSFNNGLVGNQRQIDPSLIANLKSYNTQQSVDHERGHQSSNSQHGLNYTQQPIRSEFSRSLLQEHQQLPNGYMHGNLGLQTMPNGANVLGGDVESSRDKLSARGFTPELHNVPMRLEMGESPVNYDFFGGQQQSNTQLSGMLQPLPRQQMTFNDMQLLKQQVMVKQMHEYQMQQQLQKQQLEARQLNSLNRNAVNGSCASDTQSRMINGIPLQNASSNWFQPDLMTGNTNWMHRGISPAVQGSSSGLMITPEHGQSNLMAQQFGPSLYGMPVSGTNAPQNAFSSVQMNRLAAPHGSANRSYSLTNQPTSFLNQGDVQDSQMHPRSTYQEKALFSQTSVPDSNNRPNFENFQQDDSRERNISAQDKFCQMEDSGPAEKSFMKVPENMNALQKSSALDPTEEKILFGSDDNLWDAFGSSTDMSLQGNLMSSNSDLFDACPSLQSGSWSALMQSAVAETTSDDAGVHGWVNSNTVPHANLHTDSRAQDLGAKASNPLSERFHSDSTGAAVQHLPDKVNKVSDHGLFEKPMAQLSQMAGNIIHSSSIDEQNNLCSIRQNEGIEDRFGIWKAASNPNVAALIEQKNHFTQNPQRASYGFGIASAGNDSSASRDVQGNIQQHLDNNSVEKAIPQLKSRDGSQILESYARNNAGTNEMVNARDFSMLPGGKETQSGHVGSRPSTSRKFQYHPMGNIDVTNESCQEKVSHLPTTLEQVPVGNQGYFGQSKFLGQSAMNMPIDRGHVSQNDLNCTNEAFNGMGSENSPSTSASADRNVDRCNQVKSASSRQTMLELLHKVDQSPDNSSETNVSGIPEANASAEYGGQFRHNQSSASQGFNLQLAPPSQLAPSPDNVQFSRNSLQPLNSFHTGPEKGGTSQSRFAPWASNQSYQQSTHQGPFPGILGGSNMTSGFPYSRGYHQNQQMAVATRQSAANNSVDSSSELSTPQVKERDESSDFDQRMLSASQPLVASSSPQQSSSSGMMSDSPSGISAPQHQFWNQPSKPQPVILRPHPLPSNNMAASFSRQEKTNQLSSQNGDMSLSGRDMVNMHGLQSKDMGAKRTSNVASMFSKMVQSNHQSFDRSLPSNNVPKDSLHHEEQMVGSGEGDTSKVTVENGDFDPQEVAHKGEQQSPSRSDGLVRGGLNNKESANHLPHLGHTVSQSFSSKNHAASVRADHQQISPQMAPSWYSQYGTFKNGLVQPMNDTGRFTPLKIGEQSSNVESSVDGTHTVQSCKQCLMEQMSGSAPGVETPSSDSLLHGATDKLLKVDKPKKRKTATSELQSWNKEVMQDSQRLKTLSEAEINWARETNRFAEKVEFETLLEDSPPIRSKRRLIHTTQLMQQLFSPPPARVISLVASSNYDVVAYTAGRAALGDACSSSSTDRSEGFSPPNNSNPLSERTENEKISDQYISKAAEDFISRTRKLETDFAGLENGTTIPDLRVEVQDLEKFAVINRFAKFHPPSSSMNRTVNSLKLNLQRYVTIAPMPQNIPDRVQCLSL", "length": 1526, "header": "tr|Q9FF08-1|Q9FF08_ARATH Isoform 1 of Dentin sialophosphoprotein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FF08-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BDJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDJ5/entry", "sequence": { "sequence": "MPGNEFGEKIHNFFGQEGLSQDQQHQSQVVDRSWSSFNNGLVGNQRQIDPSLIANLKSYNTQQSVDHERGHQSSNSQHGLNYTQQPIRSEFSRSLLQEHQQLPNGYMHGNLGLQTMPNGANVLGGDVESSRDKLSARGFTPELHNVPMRLEMGESPVNYDFFGGQQQSNTQLSGMLQPLPRQQMTFNDMQLLKQQVMVKQMHEYQMQQQLQKQQLEARQLNSLNRNAVNGSCASDTQSRMINGIPLQNASSNWFQPDLMTGNTNWMHRGISPAVQGSSSGLMITPEHGQSNLMAQQFGPSLYGMPVSGTNAPQNAFSSVQMNRLAAPHGSANRSYSLTNQPTSFLNQGDVQDSQMHPRSTYQEKALFSQTSVPDSNNRPNFENFQQDDSRERNISAQDKFCQMEDSGPAEKSFMKVPENMNALQKSSALDPTEEKILFGSDDNLWDAFGSSTDMSLQGNLMSSNSDLFDACPSLQSGSWSALMQSAVAETTSDDAGVHGWVNSNTVPHANLHTDSRAQDLGAKASNPLSERFHSDSTGAAVQHLPDKNEGIEDRFGIWKAASNPNVAALIEQKNHFTQNPQRASYGFGIASAGNDSSASRDVQGNIQQHLDNNSVEKAIPQLKSRDGSQILESYARNNAGTNEMVNARDFSMLPGGKETQSGHVGSRPSTSRKFQYHPMGNIDVTNESCQEKVSHLPTTLEQVPVGNQGYFGQSKFLGQSAMNMPIDRGHVSQNDLNCTNEAFNGMGSENSPSTSASADRNVDRCNQVKSASSRQTMLELLHKVDQSPDNSSETNVSGIPEANASAEYGGQFRHNQSSASQGFNLQLAPPSQLAPSPDNVQFSRNSLQPLNSFHTGPEKGGTSQSRFAPWASNQSYQQSTHQGPFPGILGGSNMTSGFPYSRGYHQNQQMAVATRQSAANNSVDSSSELSTPQVKERDESSDFDQRMLSASQPLVASSSPQQSSSSGMMSDSPSGISAPQHQFWNQPSKPQPVILRPHPLPSNNMAASFSRQEKTNQLSSQNGDMSLSGRDMVNMHGLQSKDMGAKRTSNVASMFSKMVQSNHQSFDRSLPSNNVPKDSLHHEEQMVGSGEGDTSKVTVENGDFDPQEVAHKGEQQSPSRSDGLVRGGLNNKESANHLPHLGHTVSQSFSSKNHAASVRADHQQISPQMAPSWYSQYGTFKNGLVQPMNDTGRFTPLKIGEQSSNVESSVDGTHTVQSCKQCLMEQMSGSAPGVETPSSDSLLHGATDKLLKVDKPKKRKTATSELQSWNKEVMQDSQRLKTLSEAEINWARETNRFAEKVEFETLLEDSPPIRSKRRLIHTTQLMQQLFSPPPARVISLVASSNYDVVAYTAGRAALGDACSSSSTDRSEGFSPPNNSNPLSERTENEKISDQYISKAAEDFISRTRKLETDFAGLENGTTIPDLRVEVQDLEKFAVINRFAKFHPPSSSMNRTVNSLKLNLQRYVTIAPMPQNIPDRVQCLSL", "length": 1485, "header": "tr|A0A1P8BDJ5-1|Q9FF08_ARATH Computationally mapped isoform of Dentin sialophosphoprotein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FF08-1" }, "locus": { "chromosome": "5", "start_pos": 2533581, "end_pos": 2540230, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G07940.4", "url": "https://www.ensemblgenomes.org/id/AT5G07940.4" }, { "database": "Ensembl Peptide", "id": "AT5G07940.4", "url": "https://www.ensemblgenomes.org/id/AT5G07940.4" } ] } }, { "isoform_ac": "Q9FF08-1", "url": "https://www.uniprot.org/uniprotkb/Q9FF08/entry", "sequence": { "sequence": "MPGNEFGEKIHNFFGQEGLSQDQQHQSQVVDRSWSSFNNGLVGNQRQIDPSLIANLKSYNTQQSVDHERGHQSSNSQHGLNYTQQPIRSEFSRSLLQEHQQLPNGYMHGNLGLQTMPNGANVLGGDVESSRDKLSARGFTPELHNVPMRLEMGESPVNYDFFGGQQQSNTQLSGMLQPLPRQQMTFNDMQLLKQQVMVKQMHEYQMQQQLQKQQLEARQLNSLNRNAVNGSCASDTQSRMINGIPLQNASSNWFQPDLMTGNTNWMHRGISPAVQGSSSGLMITPEHGQSNLMAQQFGPSLYGMPVSGTNAPQNAFSSVQMNRLAAPHGSANRSYSLTNQPTSFLNQGDVQDSQMHPRSTYQEKALFSQTSVPDSNNRPNFENFQQDDSRERNISAQDKFCQMEDSGPAEKSFMKVPENMNALQKSSALDPTEEKILFGSDDNLWDAFGSSTDMSLQGNLMSSNSDLFDACPSLQSGSWSALMQSAVAETTSDDAGVHGWVNSNTVPHANLHTDSRAQDLGAKASNPLSERFHSDSTGAAVQHLPDKVNKVSDHGLFEKPMAQLSQMAGNIIHSSSIDEQNNLCSIRQNEGIEDRFGIWKAASNPNVAALIEQKNHFTQNPQRASYGFGIASAGNDSSASRDVQGNIQQHLDNNSVEKAIPQLKSRDGSQILESYARNNAGTNEMVNARDFSMLPGGKETQSGHVGSRPSTSRKFQYHPMGNIDVTNESCQEKVSHLPTTLEQVPVGNQGYFGQSKFLGQSAMNMPIDRGHVSQNDLNCTNEAFNGMGSENSPSTSASADRNVDRCNQVKSASSRQTMLELLHKVDQSPDNSSETNVSGIPEANASAEYGGQFRHNQSSASQGFNLQLAPPSQLAPSPDNVQFSRNSLQPLNSFHTGPEKGGTSQSRFAPWASNQSYQQSTHQGPFPGILGGSNMTSGFPYSRGYHQNQQMAVATRQSAANNSVDSSSELSTPQVKERDESSDFDQRMLSASQPLVASSSPQQSSSSGMMSDSPSGISAPQHQFWNQPSKPQPVILRPHPLPSNNMAASFSRQEKTNQLSSQNGDMSLSGRDMVNMHGLQSKDMGAKRTSNVASMFSKMVQSNHQSFDRSLPSNNVPKDSLHHEEQMVGSGEGDTSKVTVENGDFDPQEVAHKGEQQSPSRSDGLVRGGLNNKESANHLPHLGHTVSQSFSSKNHAASVRADHQQISPQMAPSWYSQYGTFKNGLVQPMNDTGRFTPLKIGEQSSNVESSVDGTHTVQSCKQCLMEQMSGSAPGVETPSSDSLLHGATDKLLKVDKPKKRKTATSELQSWNKEVMQDSQRLKTLSEAEINWARETNRFAEKVEFETLLEDSPPIRSKRRLIHTTQLMQQLFSPPPARVISLVASSNYDVVAYTAGRAALGDACSSSSTDRSEGFSPPNNSNPLSERTENEKISDQYISKAAEDFISRTRKLETDFAGLENGTTIPDLRVEVQDLEKFAVINRFAKFHPPSSSMNRTVNSLKLNLQRYVTIAPMPQNIPDRVQCLSL", "length": 1526, "header": "tr|Q9FF08-1|Q9FF08_ARATH Isoform 1 of Dentin sialophosphoprotein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FF08-1" }, "locus": { "chromosome": "5", "start_pos": 2533724, "end_pos": 2540230, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G07940.3", "url": "https://www.ensemblgenomes.org/id/AT5G07940.3" }, { "database": "Ensembl Peptide", "id": "AT5G07940.3", "url": "https://www.ensemblgenomes.org/id/AT5G07940.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1509, "start_aa": "Thr", "end_pos": 1509, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1509", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 525, "start_aa": "Ser", "end_pos": 525, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser525", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FF08", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9FF08" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 625, "start_aa": "Ser", "end_pos": 625, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser625", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FF08", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9FF08" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 735, "start_aa": "Ser", "end_pos": 735, "end_aa": "Ser", "residue": "Ser", 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Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BDL9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDL9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen 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IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Sato S, Kaneko T, Kotani H, Nakamura Y, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FLV8", "url": "https://www.uniprot.org/uniprotkb/Q9FLV8" } ], "reference": [ { "type": "PubMed", "id": "9628582", "url": "https://glygen.org/publication/PubMed/9628582" } ] } ], "pathway": [ { "id": "ath:AT5G24040", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G24040", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "Q9FLV8", "url": "https://www.uniprot.org/uniprotkb/Q9FLV8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], 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repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MNJ8.8 PE=1 SV=1 CANONICAL=Q9FHT6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BDQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDQ7/entry", "sequence": { "sequence": "MFTNNQRQEERTGKHGTPRLQYLQELVSQFQNATDEETKERIVANLANFAYDPYNYTILRQLNVLELFVDCITEPNEKLVEFGIGGICNACAEPKNVATIVEADGIPLIIKSLSSPVRNTVSTPHLCLSGV", "length": 131, "header": "tr|A0A1P8BDQ7-1|Q9FHT6_ARATH Computationally mapped isoform of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MNJ8.8 PE=1 SV=1 CANONICAL=Q9FHT6-1" }, "locus": { "chromosome": "5", "start_pos": 14762365, "end_pos": 14764410, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G37290.3", "url": "https://www.ensemblgenomes.org/id/AT5G37290.3" }, { "database": "Ensembl Peptide", "id": "AT5G37290.3", "url": "https://www.ensemblgenomes.org/id/AT5G37290.3" } ] } }, { "isoform_ac": "Q9FHT6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHT6/entry", "sequence": { 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Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BDQ7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDQ7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BDQ7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDQ7" } ], 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"MECNKDEAKRAMDIAERKMTEKDYTGAKKFANKAQNLFPELDGLKQLFVAINVYISGEKTFAGEADWYGVLGVDPFASDEALKKQYRKLVLMLHPDKNKCKGAEGAFNLVAEAWALLSDKDKRILYNVKRGKDVKAAQQRFPTTQREIPSHQPTSNGIPNVREHVVSSARARYKPATRKPAARMDRSRTGSPAFVYPTQESSTFWTMCNKCDTQYEYQRVYLNQTLLCPHCHHGFVAEEKTPPTNIPKPPVNISSNQHHRSSKNQASNKNSNGSSYRREPATSVNHNFQWDSSRMGGSYSRNATNETANVVQQGQDKLKRVFWETQEREAARGFTNSDLGNFKRQKTDDSHMRGPSAGKLSNQIGASRSSTPFYAANENTESSNTIGSRHPYVQALLRSDIKKALMDRGQSEIFKRLPMMIAKMEGKVNPTEGEKNSTKAMSSKASEVERSKMSSTANEVERSVEVIPHESDEVKEIVVPDSDFHNFDLDRSESAFKDDQIWAAYDDADGMPRFYARIQKVISVNPFKLKISWLNSKTTSEFGPIDWMGAGFAKSCGDFRCGRYESTDTLNAFSHSVDFTKGARGLLHILPKKGQVWALYRNWSPEWDKNTPDEVKHKYEMVEVLDDYTEDDQSLTVALLLKAEGFRVVFRRCTEKLGVRKIAKEEMLRFSHQVPHYILTGKEADNAPEGFLELDPAATPCAFSSENAEADEKSEAVKENEQGEAVKENEESEALKENEESEAVKENEEVGMDLD", "length": 755, "header": "tr|Q9FGM2-1|Q9FGM2_ARATH Isoform 1 of DnaJ heat shock amino-terminal domain protein OS=Arabidopsis thaliana OX=3702 GN=MFH8.9 PE=1 SV=1 CANONICAL=Q9FGM2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BDU8-1", "url": 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"MECNKDEAKRAMDIAERKMTEKDYTGAKKFANKAQNLFPELDGLKQLFVAINVYISGEKTFAGEADWYGVLGVDPFASDEALKKQYRKLVLMLHPDKNKCKGAEGAFNLVAEAWALLSDKDKRILYNVKRGKDVKAAQQRFPTTQREIPSHQPTSNGIPNVREHVVSSARARYKPATRKPAARMDRSRTGSPAFVYPTQESSTFWTMCNKCDTQYEYQRVYLNQTLLCPHCHHGFVAEEKTPPTNIPKPPVNISSNQHHRSSKNQASNKNSNGSSYRREPATSVNHNFQWDSSRMGGSYSRNATNETANVVQQGQDKLKRVFWETQEREAARGFTNSDLGNFKRQKTDDSHMRGPSAGKLSNQIGASRSSTPFYAANENTESSNTIGSRHPYVQALLRSDIKKALMDRGQSEIFKRLPMMIAKMEGKVNPTEGEKNSTKAMSSKASEVERSKMSSTANEVERSVEVIPHESDEVKEIVVPDSDFHNFDLDRSESAFKDDQIWAAYDDADGMPRFYARIQKVISVNPFKLKISWLNSKTTSEFGPIDWMGAGFAKSCGDFRCGRYESTDTLNAFSHSVDFTKGARGLLHILPKKGQVWALYRNWSPEWDKNTPDEVKHKYEMVEVLDDYTEDDQSLTVALLLKAEGFRVVFRRCTEKLGVRKIAKEEMLRFSHQVPHYILTGKEADNAPEGFLELDPAATPCAFSSENAEADEKSEAVKENEQGEAVKENEESEALKENEESEAVKENEEVGMDLD", "length": 755, "header": "tr|Q9FGM2-1|Q9FGM2_ARATH Isoform 1 of DnaJ heat shock amino-terminal domain protein OS=Arabidopsis thaliana OX=3702 GN=MFH8.9 PE=1 SV=1 CANONICAL=Q9FGM2-1" }, "locus": { "chromosome": "5", "start_pos": 21553355, "end_pos": 21557592, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G53150.2", "url": "https://www.ensemblgenomes.org/id/AT5G53150.2" }, { "database": "Ensembl Peptide", "id": "AT5G53150.2", "url": "https://www.ensemblgenomes.org/id/AT5G53150.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, 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"A0A1P8BDU8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDU8" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BDU8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDU8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FGM2", "url": "https://www.uniprot.org/uniprotkb/Q9FGM2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 305, "end_pos": 307, "annotation": "n_glycosylation_sequon" }, { "start_pos": 436, "end_pos": 438, "annotation": "n_glycosylation_sequon" }, { "start_pos": 602, "end_pos": 604, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FGM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGM2" }, { "id": "PS50076", "database": "PROSITE", 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"Protein Classification" ] }, { "id": "PTHR45504:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45504:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_197168", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197168", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G16650", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G16650", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BDW0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BDW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FMD2", "url": "https://www.uniprot.org/uniprotkb/Q9FMD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FMD2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMD2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDNDKSPPKDYYKILEVDYDATEELIRLNYRKLALKWHPDKHKGDSAATEKFQEINEAYNVLMDPAKRFEYDFTGIYEIHKYTLREYLARFKGMILTCNGLGISQSSSPWTHQLAETTKQQTSKDTV", "length": 128, "header": "tr|Q9FMD2-1|Q9FMD2_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MTG13.10 PE=1 SV=1 CANONICAL=Q9FMD2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BDW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDW0/entry", "sequence": { "sequence": "MEDNDKSPPKDYYKILEVDYDATEELIRLNYRKLALKWHPDKHKGDSAATEKFQEINEAYNVLMDPAKRFEYDFTGIYEIHKYTLREYLARFKGMILTCNGLGISQSSSPWTHQLAETTKQQTSKVGFLFLFSLLGISNLLCNFFKTHLRPKLLDPFLYSLSSQDTV", "length": 167, "header": "tr|A0A1P8BDW0-1|Q9FMD2_ARATH Computationally mapped isoform of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MTG13.10 PE=1 SV=1 CANONICAL=Q9FMD2-1" }, "locus": { "chromosome": "5", "start_pos": 5463177, "end_pos": 5465362, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G16650.2", "url": "https://www.ensemblgenomes.org/id/AT5G16650.2" }, { "database": "Ensembl Peptide", "id": "AT5G16650.2", "url": "https://www.ensemblgenomes.org/id/AT5G16650.2" } ] } }, { "isoform_ac": "Q9FMD2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMD2/entry", "sequence": { "sequence": "MEDNDKSPPKDYYKILEVDYDATEELIRLNYRKLALKWHPDKHKGDSAATEKFQEINEAYNVLMDPAKRFEYDFTGIYEIHKYTLREYLARFKGMILTCNGLGISQSSSPWTHQLAETTKQQTSKDTV", "length": 128, "header": "tr|Q9FMD2-1|Q9FMD2_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MTG13.10 PE=1 SV=1 CANONICAL=Q9FMD2-1" }, "locus": { "chromosome": "5", "start_pos": 5463177, "end_pos": 5465398, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G16650.1", "url": "https://www.ensemblgenomes.org/id/AT5G16650.1" }, { "database": "Ensembl Peptide", "id": "AT5G16650.1", "url": "https://www.ensemblgenomes.org/id/AT5G16650.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, 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"PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BDW0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDW0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G16650", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G16650", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FMD2", "url": "https://www.uniprot.org/uniprotkb/Q9FMD2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FMD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMD2" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 76, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { 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"https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G40540", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd13999", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13999", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "834052", "url": "https://www.ncbi.nlm.nih.gov/gene/834052", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9FM43", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9FM43*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein 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"categories": [ "Protein Classification" ] }, { "id": "Q9FM43", "url": "https://www.orthodb.org/?gene=Q9FM43", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23257", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23257", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23257:SF761", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23257:SF761", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07714", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07714", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_198870", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198870", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "17989", "url": 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"https://www.uniprot.org/uniprotkb/A0A1P8BEB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BEB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEB2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FM43", "url": "https://www.uniprot.org/uniprotkb/Q9FM43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FM43-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSVTGFYSNEVFELDPKWVVDPQHLFVGPKIGEGAHAKIYEGKYKNKTVAIKIVKRGESPEEIAKRESRFAREVSMLSRVQHKNLVKFIGACKEPIMVIVTELLLGGTLRKYLVSLRPGSLDIRVAVGYALDIARAMECLHSHGVIHRDLKPESLILTADYKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRHGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNVRPSADDLPKDLAMIVTSCWKEDPNDRPNFTEIIQMLLRCLSTISSTELVPPAIKRVFSSENTVLPPESPGTCSLMTVRDKDQIPTDANSAQNEVRGSFFFFCC", "length": 353, "header": "tr|Q9FM43-1|Q9FM43_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MNF13.60 PE=1 SV=1 CANONICAL=Q9FM43-1" }, "isoforms": [ { "isoform_ac": "A0A178UM63-1", "url": "https://www.uniprot.org/uniprotkb/A0A178UM63/entry", "sequence": { "sequence": "MGSVTGFYSNEVFELDPKWVVDPQHLFVGPKIGEGAHAKIYEGKYKNKTVAIKIVKRGESPEEIAKRESRFAREVSMLSRVQHKNLVKFIGACKEPIMVIVTELLLGGTLRKYLVSLRPGSLDIRVAVGYALDIARAMECLHSHGVIHRDLKPESLILTADYKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRHGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKVSFLIFKCFNHLVLQPDNVFLIVVCFIIFRVRT", "length": 281, "header": "tr|A0A178UM63-1|Q9FM43_ARATH Computationally mapped isoform of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MNF13.60 PE=1 SV=1 CANONICAL=Q9FM43-1" }, "locus": { "chromosome": "5", "start_pos": 16236981, "end_pos": 16239601, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G40540.4", "url": "https://www.ensemblgenomes.org/id/AT5G40540.4" }, { "database": "Ensembl Peptide", "id": "AT5G40540.4", "url": "https://www.ensemblgenomes.org/id/AT5G40540.4" } ] } }, { "isoform_ac": "A0A1P8BEB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEB1/entry", "sequence": { "sequence": "MLSRVQHKNLVKFIGACKEPIMVIVTELLLGGTLRKYLVSLRPGSLDIRVAVGYALDIARAMECLHSHGVIHRDLKPESLILTADYKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRHGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNVRPSADDLPKDLAMIVTSCWKEDPNDRPNFTEIIQMLLRCLSTISSTELVPPAIKRVFSSENTVLPPESPGTCSLMTVRDKDQIPTDANSAQNEVRGSFFFFCC", "length": 277, "header": "tr|A0A1P8BEB1-1|Q9FM43_ARATH Computationally mapped isoform of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MNF13.60 PE=1 SV=1 CANONICAL=Q9FM43-1" }, "locus": { "chromosome": "5", "start_pos": 16236981, "end_pos": 16239601, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G40540.2", "url": "https://www.ensemblgenomes.org/id/AT5G40540.2" }, { "database": "Ensembl Peptide", "id": "AT5G40540.2", "url": "https://www.ensemblgenomes.org/id/AT5G40540.2" } ] } }, { "isoform_ac": "A0A1P8BEB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEB2/entry", "sequence": { "sequence": "MVIVTELLLGGTLRKYLVSLRPGSLDIRVAVGYALDIARAMECLHSHGVIHRDLKPESLILTADYKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRHGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNVRPSADDLPKDLAMIVTSCWKEDPNDRPNFTEIIQMLLRCLSTISSTELVPPAIKRVFSSENTVLPPESPGTCSLMTVRDKDQIPTDANSAQNEVRGSFFFFCC", "length": 256, "header": "tr|A0A1P8BEB2-1|Q9FM43_ARATH Computationally mapped isoform of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MNF13.60 PE=1 SV=1 CANONICAL=Q9FM43-1" }, "locus": { "chromosome": "5", "start_pos": 16236981, "end_pos": 16239601, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G40540.3", "url": "https://www.ensemblgenomes.org/id/AT5G40540.3" }, { "database": "Ensembl Peptide", "id": "AT5G40540.3", "url": "https://www.ensemblgenomes.org/id/AT5G40540.3" } ] } }, { "isoform_ac": "Q9FM43-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM43/entry", "sequence": { "sequence": "MGSVTGFYSNEVFELDPKWVVDPQHLFVGPKIGEGAHAKIYEGKYKNKTVAIKIVKRGESPEEIAKRESRFAREVSMLSRVQHKNLVKFIGACKEPIMVIVTELLLGGTLRKYLVSLRPGSLDIRVAVGYALDIARAMECLHSHGVIHRDLKPESLILTADYKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRHGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNVRPSADDLPKDLAMIVTSCWKEDPNDRPNFTEIIQMLLRCLSTISSTELVPPAIKRVFSSENTVLPPESPGTCSLMTVRDKDQIPTDANSAQNEVRGSFFFFCC", "length": 353, "header": "tr|Q9FM43-1|Q9FM43_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MNF13.60 PE=1 SV=1 CANONICAL=Q9FM43-1" }, "locus": { "chromosome": "5", "start_pos": 16236956, "end_pos": 16239601, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G40540.1", "url": "https://www.ensemblgenomes.org/id/AT5G40540.1" }, { "database": "Ensembl Peptide", "id": "AT5G40540.1", "url": "https://www.ensemblgenomes.org/id/AT5G40540.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BEB1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEB1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BEB1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEB1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G40540", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G40540", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein kinase activity", "id": "GO:0004672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004672", "evidence": [ { "database": "UniProtKB", "id": "Q9FM43", "url": "https://www.uniprot.org/uniprotkb/Q9FM43" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "Q9FM43", "url": "https://www.uniprot.org/uniprotkb/Q9FM43" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "Q9FM43", "url": "https://www.uniprot.org/uniprotkb/Q9FM43" } ], "pmid": "" }, { "name": "protein serine/threonine/tyrosine kinase activity", "id": "GO:0004712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004712", "evidence": [ { "database": "UniProtKB", "id": "Q9FM43", "url": "https://www.uniprot.org/uniprotkb/Q9FM43" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FM43", "url": "https://www.uniprot.org/uniprotkb/Q9FM43" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FM43", "url": "https://www.uniprot.org/uniprotkb/Q9FM43" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FM43", "url": "https://www.uniprot.org/uniprotkb/Q9FM43" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "O23304-1", "O24527-1", "O48963-1", "O49717-1", "O49839-1", "O49840-1", "O64629-1", "O64682-1", "O64768-1", "O64782-1", "O64816-1", "O64825-1", "O65554-1", "O80345-1", "O80396-1", "O80397-1", "O80528-1", "O80673-1", "O80888-1", "O80902-1", "O80939-1", "O80963-1", "O81291-1", "O81472-1", "O81833-1", "O81905-1", "P0C5E2-1", "P24100-1", "P25859-1", "P27450-1", "P47735-1", "Q9M9C5-1", "Q9S7I6-1", "Q9SKG5-1", "A8R7E6-1", "B9DGY1-1", "C0LGD9-1", "C0LGE0-1", "C0LGE4-1", "C0LGF4-1", "C0LGF5-1", "C0LGG6-1", "C0LGG8-1", "C0LGH8-1", "C0LGI5-1", "C0LGJ1-1", "C0LGJ9-1", "C0LGL4-1", "C0LGL9-1", "C0LGN2-1", "C0LGP2-1", "C0LGP9-1", "C0LGQ4-1", "C0LGQ5-1", "C0LGQ7-1", "C0LGQ9-1", "C0LGR3-1", "C0LGR6-1", "C0LGR9-1", "C0LGS2-1", "C0LGS3-1", "C0LGT1-1", "C0LGT6-1", "C0LGU0-1", "C0LGU1-1", "C0LGU7-1", "C0LGV1-1", "C0LGW2-1", "C0LGW6-1", "C0LGX3-1", "D7SFH9-1", "F4HRJ4-1", "F4HU55-1", "F4I2N7-1", "F4I4F2-1", "F4I7Y4-1", "F4IS56-1", "F4IVI0-1", "F4J0D2-1", "F4JTP5-1", "F4JY37-1", "F4JZW1-1", "F4K6B8-1", "O22040-1", "O22042-1", "O22476-1", "O22558-1", "O22833-1", "O22932-1", "O81069-1", "O82318-1", "P43298-1", "Q38997-2", "Q39016-1", "Q39024-1", "Q39192-1", "Q39193-1", "Q42371-1", "Q6XAT2-1", "Q8LPS5-1", "Q8VZG8-1", "Q8W4L3-1", "Q8W4S5-1", "Q93V58-1", "Q940H6-1", "Q944A7-1", "Q94AG2-1", "Q94F62-1", "Q9C5H5-1", "Q9FE20-1", "Q9FN37-1", "Q9FN93-1", "Q9FYK0-1", "Q9FZ59-1", "Q9LDI3-1", "Q9LEU7-1", "Q9LFP7-1", "Q9LHP4-1", "Q9LJF3-1", "Q9LJM4-1", "Q9LJY0-1", "Q9LPT1-1", "Q9LSR8-1", "Q9LT96-1", "Q9LVP0-1", "Q9LZW4-1", "Q9M0G7-1", "Q9M9S4-1", "Q9MA15-1", "Q9MAM1-3", "Q9SEZ7-1", "Q9SHI2-1", "Q9SIT1-1", "Q9SKB2-1", "Q9XF67-1", "Q9ZQR3-1", "Q9ZRF9-1", "Q9ZWC8-1", "C0LGT5-1", "C0LGV0-1", "O22971-1", "Q7FK82-1", "O48814-1", "O64817-1", "O80719-1", "C0LGU5-1", "O49545-1", "O65440-1", "Q0WVM4-1", "Q8VYT3-1", "Q93ZS4-1", "Q9LFS4-1", "Q9M2Z1-1", "Q9SYQ8-1", "P42158-1", "P42818-1", "P43288-1", "P43289-1", "P43291-1", "P43292-1", "P46573-1", "P51568-1", "P92937-1", "P93025-1", "Q06548-1", "Q38869-1", "Q39008-1", "Q39011-1", "Q39021-1", "Q39022-1", "Q683C9-1", "Q8LF80-1", "Q8LG64-1", "Q8LPI7-1", "Q8RWC9-1", "P92958-1", "P93759-1", "Q05609-1", "Q05999-1", "Q06850-1", "Q0PW40-1", "Q0WNY5-1", "Q0WPH8-1", "Q0WRY5-1", "Q1PDV6-1", "Q1PE17-1", "Q1PFB9-1", "Q1PFH8-1", "Q2MHE4-1", "Q2QAV0-1", "Q2V419-1", "Q2V452-2", "Q38868-1", "Q38870-1", "Q38871-1", "Q38872-1", "Q38873-1", "Q39010-1", "Q39012-1", "Q39027-1", "Q39030-1", "Q39050-1", "Q39086-1", "Q39183-1", "Q39191-1", "Q39203-1", "Q39238-1", "Q3E8W4-1", "Q3E9C0-1", "Q42396-1", "Q42438-1", "Q42479-1", "Q8L710-1", "Q7X8C5-1", "Q7XJR9-1", "Q84JQ4-1", "Q84TI6-1", "Q84VQ3-1", "Q8GWJ7-1", "Q8GXQ3-1", "Q8GY82-1", "Q8GYA4-1", "Q8GYQ5-1", "Q8GZ99-1", "Q8H186-1", "Q8H1D6-1", "Q8L617-1", "Q8LPJ1-1", "Q8RWG1-1", "Q8RWH3-1", "Q8RWL2-1", "Q8RWL6-1", "Q8RWW0-1", "Q8RWX4-1", "Q8RWZ5-1", "Q8RY17-1", "Q8S8Y9-1", "Q8VYA3-1", "Q8VYY5-1", "Q8VZD5-1", "Q8W4I7-1", "Q8W4P1-1", "Q93VJ2-1", "Q93VK0-1", "Q93Y08-1", "Q93YN1-1", "Q93Z18-1", "Q93Z30-1", "Q944Q0-1", "Q08466-1", "Q08467-1", "Q39023-1", "Q39026-1", "Q9SG12-1", "Q93VD3-1", "Q9C562-1", "Q9C5S9-1", "Q9C9M7-1", 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"Q9SZV2-1", "A0A1P8AWS5-1", "O81067-1", "F4I065-1", "F4HWU0-1", "A0A1P8AVQ6-1" ], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "O64629-1", "O23304-1", "O24527-1", "O48963-1", "O49717-1", "O49839-1", "O49840-1", "O64682-1", "O64768-1", "O64782-1", "O64816-1", "O64825-1", "O65554-1", "O80345-1", "O80396-1", "O80397-1", "O80528-1", "O80673-1", "O80888-1", "O80902-1", "O80939-1", "O80963-1", "O81291-1", "O81472-1", "O81833-1", "O81905-1", "P0C5E2-1", "P24100-1", "P25859-1", "P27450-1", "P47735-1", "C0LGE4-1", "C0LGR6-1", "F4HRJ4-1", "Q9FN93-1", "Q9M0G7-1", "Q9M9S4-1", "A8R7E6-1", "B9DGY1-1", "C0LGD9-1", "C0LGE0-1", "C0LGF4-1", "C0LGF5-1", "C0LGG6-1", "C0LGG8-1", "C0LGH8-1", "C0LGI5-1", "C0LGJ1-1", 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"ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG7" } ] } ] }, { "uniprot_ac": "C0LGG8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG8" } ] } ] }, { "uniprot_ac": "C0LGG9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", 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"ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGH3" } ] } ] }, { "uniprot_ac": "C0LGH8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGH8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGH8" } ] } ] }, { "uniprot_ac": "C0LGI2", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGI2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGI2", "database": "UniProtKB", "url": 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"ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGJ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGJ9" } ] } ] }, { "uniprot_ac": "C0LGK4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGK4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGK4" } ] } ] }, { "uniprot_ac": "C0LGK9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", 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"url": "https://www.uniprot.org/uniprotkb/C0LGP2" } ] } ] }, { "uniprot_ac": "C0LGP4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP4" } ] } ] }, { "uniprot_ac": "C0LGP9", "gene_name": "IMK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP9" } ] } ] }, { "uniprot_ac": "C0LGQ4", "gene_name": "MDIS2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ4" } ] } ] }, { "uniprot_ac": "C0LGQ5", "gene_name": "GSO1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ5" } ] } ] }, { "uniprot_ac": "C0LGQ7", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ7" } ] } ] }, { "uniprot_ac": "C0LGQ9", "gene_name": "GHR1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ9" } ] } ] }, { "uniprot_ac": "C0LGR3", "gene_name": "RGI3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR3" } ] } ] }, { "uniprot_ac": "C0LGR6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR6" } ] } ] }, { "uniprot_ac": "C0LGR9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR9" } ] } ] }, { "uniprot_ac": "C0LGS2", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGS2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGS2" } ] } ] }, { "uniprot_ac": "C0LGS3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGS3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGS3" } ] } ] }, { "uniprot_ac": "C0LGT1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT1" } ] } ] }, { "uniprot_ac": "C0LGT5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT5" } ] } ] }, { "uniprot_ac": "C0LGT6", "gene_name": "EFR", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT6" } ] } ] }, { "uniprot_ac": "C0LGU0", "gene_name": "PRK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU0" } ] } ] }, { "uniprot_ac": "C0LGU1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU1" } ] } ] }, { "uniprot_ac": "C0LGU5", "gene_name": "CIK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU5" } ] } ] }, { "uniprot_ac": "C0LGU7", "gene_name": "MDIS1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU7" } ] } ] }, { "uniprot_ac": "C0LGV0", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGV0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGV0" } ] } ] }, { "uniprot_ac": "C0LGV1", "gene_name": "RGI2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGV1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGV1" } ] } ] }, { "uniprot_ac": "C0LGW2", "gene_name": "PAM74", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGW2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGW2" } ] } ] }, { "uniprot_ac": "C0LGW6", "gene_name": "ERL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGW6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGW6" } ] } ] }, { "uniprot_ac": "C0LGX1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGX1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGX1" } ] } ] }, { "uniprot_ac": "C0LGX3", "gene_name": "HSL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGX3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGX3" } ] } ] }, { "uniprot_ac": "D7SFH9", "gene_name": "LRK10L-2.6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "D7SFH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/D7SFH9" } ] }, { "ec_number": "3.1.4.46", "activity": "sn-glycero-3-phospho-(1'-rac-glycerol) + H2O = sn-glycerol 3-phosphate + glycerol + H(+).", "evidence": [ { "id": "D7SFH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/D7SFH9" } ] }, { "ec_number": "3.1.4.46", "activity": "", "evidence": [ { "id": "D7SFH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/D7SFH9" } ] } ] }, { "uniprot_ac": "F4HPN2", "gene_name": "IRE4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HPN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HPN2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HPN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HPN2" } ] } ] }, { "uniprot_ac": "F4HPR9", "gene_name": "ATMAP4K", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HPR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HPR9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HPR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HPR9" } ] } ] }, { "uniprot_ac": "F4HQ17", "gene_name": "LRK10L-1.4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ17" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ17" } ] } ] }, { "uniprot_ac": "F4HQ20", "gene_name": "LRK10L-2.5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ20" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ20" } ] } ] }, { "uniprot_ac": "F4HQ22", "gene_name": "LRK10L-2.4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ22" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ22" } ] } ] }, { "uniprot_ac": "F4HQ23", "gene_name": "LRK10L-2.7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ23" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ23" } ] } ] }, { "uniprot_ac": "F4HQ34", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ34" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ34" } ] } ] }, { "uniprot_ac": "F4HRJ4", "gene_name": "MAPKKK3", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HRJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HRJ4" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "F4HRJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HRJ4" } ] } ] }, { "uniprot_ac": "F4HU55", "gene_name": "BSK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HU55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HU55" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HU55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HU55" } ] } ] }, { "uniprot_ac": "F4HVB3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HVB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HVB3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HVB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HVB3" } ] } ] }, { "uniprot_ac": "F4HVH9", "gene_name": "RAF11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HVH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HVH9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HVH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HVH9" } ] } ] }, { "uniprot_ac": "F4HWU0", "gene_name": "CARK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HWU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HWU0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HWU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HWU0" } ] } ] }, { "uniprot_ac": "F4HX16", "gene_name": "PBL41", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HX16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HX16" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HX16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HX16" } ] } ] }, { "uniprot_ac": "F4HXP9", "gene_name": "XI-C", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HXP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HXP9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HXP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HXP9" } ] } ] }, { "uniprot_ac": "F4HYG2", "gene_name": "IRE3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HYG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HYG2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HYG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HYG2" } ] } ] }, { "uniprot_ac": "F4I065", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I065", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I065" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I065", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I065" } ] } ] }, { "uniprot_ac": "F4I0Z0", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I0Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I0Z0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I0Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I0Z0" } ] } ] }, { "uniprot_ac": "F4I2K0", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I2K0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I2K0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I2K0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I2K0" } ] } ] }, { "uniprot_ac": "F4I2N7", "gene_name": "RLK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I2N7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I2N7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I2N7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I2N7" } ] } ] }, { "uniprot_ac": "F4I3K4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I3K4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3K4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I3K4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3K4" } ] } ] }, { "uniprot_ac": "F4I3M3", "gene_name": "BSK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I3M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3M3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I3M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3M3" } ] } ] }, { "uniprot_ac": "F4I3V3", "gene_name": "LRK10L-1.5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I3V3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3V3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I3V3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3V3" } ] } ] }, { "uniprot_ac": "F4I4F2", "gene_name": "RHS3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I4F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I4F2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I4F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I4F2" } ] } ] }, { "uniprot_ac": "F4I6E4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I6E4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I6E4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I6E4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I6E4" } ] } ] }, { "uniprot_ac": "F4I7Y4", "gene_name": "BSK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I7Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I7Y4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I7Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I7Y4" } ] } ] }, { "uniprot_ac": "F4IAN2", "gene_name": "M3KDELTA7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IAN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IAN2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IAN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IAN2" } ] } ] }, { "uniprot_ac": "F4IB60", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IB60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB60" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IB60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB60" } ] } ] }, { "uniprot_ac": "F4IB76", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IB76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB76" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IB76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB76" } ] } ] }, { "uniprot_ac": "F4IP61", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IP61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IP61" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IP61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IP61" } ] } ] }, { "uniprot_ac": "F4IPV6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IPV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPV6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IPV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPV6" } ] } ] }, { "uniprot_ac": "F4IS56", "gene_name": "ILK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IS56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IS56" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IS56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IS56" } ] } ] }, { "uniprot_ac": "F4IV25", "gene_name": "PAX", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IV25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IV25" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IV25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IV25" } ] } ] }, { "uniprot_ac": "F4IVI0", "gene_name": "BUB1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IVI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IVI0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IVI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IVI0" } ] } ] }, { "uniprot_ac": "F4J0D2", "gene_name": "PBL36", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J0D2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0D2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J0D2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0D2" } ] } ] }, { "uniprot_ac": "F4J3A9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J3A9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3A9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J3A9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3A9" } ] } ] }, { "uniprot_ac": "F4J3H7", "gene_name": "ZRK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J3H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3H7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J3H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3H7" } ] } ] }, { "uniprot_ac": "F4J551", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J551", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J551" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J551", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J551" } ] } ] }, { "uniprot_ac": "F4J6F6", "gene_name": "IREH1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J6F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6F6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J6F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6F6" } ] } ] }, { "uniprot_ac": "F4J927", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J927", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J927" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J927", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J927" } ] } ] }, { "uniprot_ac": "F4J982", "gene_name": "SRPK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J982", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J982" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J982", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J982" } ] } ] }, { "uniprot_ac": "F4J9G8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J9G8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J9G8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J9G8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J9G8" } ] } ] }, { "uniprot_ac": "F4JC18", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JC18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JC18" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JC18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JC18" } ] } ] }, { "uniprot_ac": "F4JDN8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JDN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JDN8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JDN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JDN8" } ] } ] }, { "uniprot_ac": "F4JEQ2", "gene_name": "PBL23", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JEQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JEQ2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JEQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JEQ2" } ] } ] }, { "uniprot_ac": "F4JI10", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JI10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI10" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JI10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI10" } ] } ] }, { "uniprot_ac": "F4JN22", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JN22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JN22" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JN22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JN22" } ] } ] }, { "uniprot_ac": "F4JPT1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JPT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPT1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JPT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPT1" } ] } ] }, { "uniprot_ac": "F4JPX3", "gene_name": "PBL20", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JPX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPX3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JPX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPX3" } ] } ] }, { "uniprot_ac": "F4JQX7", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JQX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQX7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JQX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQX7" } ] } ] }, { "uniprot_ac": "F4JSF8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JSF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSF8" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "F4JSF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSF8" } ] } ] }, { "uniprot_ac": "F4JTP5", "gene_name": "STY46", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JTP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTP5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JTP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTP5" } ] } ] }, { "uniprot_ac": "F4JVS7", "gene_name": "MAPKKK16", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JVS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JVS7" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "F4JVS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JVS7" } ] } ] }, { "uniprot_ac": "F4JY37", "gene_name": "RUK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JY37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JY37" } ] } ] }, { "uniprot_ac": "F4JZW1", "gene_name": "PBL13", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JZW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JZW1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JZW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JZW1" } ] } ] }, { "uniprot_ac": "F4K645", "gene_name": "RAF10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4K645", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K645" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4K645", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K645" } ] } ] }, { "uniprot_ac": "F4K6B8", "gene_name": "RGI4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4K6B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K6B8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4K6B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K6B8" } ] } ] }, { "uniprot_ac": "F4KA50", "gene_name": "LRK10L-2.2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KA50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KA50" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KA50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KA50" } ] } ] }, { "uniprot_ac": "F4KA51", "gene_name": "LRK10L-2.3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KA51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KA51" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KA51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KA51" } ] } ] }, { "uniprot_ac": "F4KEF0", "gene_name": "MUL8.7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KEF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KEF0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KEF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KEF0" } ] } ] }, { "uniprot_ac": "F4KFD4", "gene_name": "MYH9.10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KFD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KFD4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KFD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KFD4" } ] } ] }, { "uniprot_ac": "F4KI00", "gene_name": "ATRLCK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KI00" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KI00" } ] } ] }, { "uniprot_ac": "O04086", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O04086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04086" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O04086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04086" } ] } ] }, { "uniprot_ac": "O04533", "gene_name": "LECRK52", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O04533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04533" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O04533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04533" } ] } ] }, { "uniprot_ac": "O04534", "gene_name": "LECRK51", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O04534", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04534" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O04534", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04534" } ] } ] }, { "uniprot_ac": "O22040", "gene_name": "ANP1", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22040", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22040" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "O22040", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22040" } ] } ] }, { "uniprot_ac": "O22042", "gene_name": "ANP3", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22042", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22042" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "O22042", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22042" } ] } ] }, { "uniprot_ac": "O22178", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22178", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22178" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22178", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22178" } ] } ] }, { "uniprot_ac": "O22476", "gene_name": "BRI1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476" } ] } ] }, { "uniprot_ac": "O22558", "gene_name": "STY8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22558", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22558" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22558", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22558" } ] } ] }, { "uniprot_ac": "O22764", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22764", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22764" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22764", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22764" } ] } ] }, { "uniprot_ac": "O22833", "gene_name": "LECRK54", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22833" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22833" } ] } ] }, { "uniprot_ac": "O22834", "gene_name": "LECRK53", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22834", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22834" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22834", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22834" } ] } ] }, { "uniprot_ac": "O22932", "gene_name": "CIPK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22932", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22932" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22932", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22932" } ] } ] }, { "uniprot_ac": "O22971", "gene_name": "CIPK13", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22971", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22971" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22971", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22971" } ] } ] }, { "uniprot_ac": "O23081", "gene_name": "CRK41", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O23081", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23081" } ] } ] }, { "uniprot_ac": "O23082", "gene_name": "CRK44", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23082", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23082" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O23082", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23082" } ] } ] }, { "uniprot_ac": "O23145", "gene_name": "ASK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23145", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23145" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O23145", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23145" } ] } ] }, { "uniprot_ac": "O23236", "gene_name": "MPK14", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23236", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23236" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "O23236", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23236" } ] } ] }, { "uniprot_ac": "O23304", "gene_name": "BLUS1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23304", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23304" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O23304", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23304" } ] } ] }, { "uniprot_ac": "O23334", "gene_name": "DL3430W", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23334", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23334" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O23334", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23334" } ] } ] }, { "uniprot_ac": "O24527", "gene_name": "SIK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O24527", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O24527" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O24527", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O24527" } ] } ] }, { "uniprot_ac": "O48814", "gene_name": "BIK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O48814", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48814" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O48814", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48814" } ] } ] }, { "uniprot_ac": "O48837", "gene_name": "LECRKS2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O48837", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48837" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O48837", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48837" } ] } ] }, { "uniprot_ac": "O48963", "gene_name": "PHOT1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O48963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48963" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O48963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48963" } ] } ] }, { "uniprot_ac": "O49318", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49318" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49318" } ] } ] }, { "uniprot_ac": "O49338", "gene_name": "CARK9", "activity": [ { "ec_number": "2.7.10.-", "activity": "", "evidence": [ { "id": "O49338", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49338" } ] } ] }, { "uniprot_ac": "O49445", "gene_name": "LECRK72", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49445", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49445" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49445", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49445" } ] } ] }, { "uniprot_ac": "O49545", "gene_name": "BAM1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545" } ] } ] }, { "uniprot_ac": "O49564", "gene_name": "CRK27", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O49564", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49564" } ] } ] }, { "uniprot_ac": "O49717", "gene_name": "CPK15", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49717", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49717" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49717", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49717" } ] } ] }, { "uniprot_ac": "O49839", "gene_name": "PBL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49839", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49839" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49839", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49839" } ] } ] }, { "uniprot_ac": "O49840", "gene_name": "PBL3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49840", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49840" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49840", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49840" } ] } ] }, { "uniprot_ac": "O64477", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64477", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64477" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64477", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64477" } ] } ] }, { "uniprot_ac": "O64556", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64556", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64556" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64556", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64556" } ] } ] }, { "uniprot_ac": "O64573", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64573" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64573" } ] } ] }, { "uniprot_ac": "O64629", "gene_name": "AUR3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64629", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64629" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64629", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64629" } ] } ] }, { "uniprot_ac": "O64639", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64639", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64639" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64639", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64639" } ] } ] }, { "uniprot_ac": "O64682", "gene_name": "PID", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64682", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64682" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64682", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64682" } ] } ] }, { "uniprot_ac": "O64768", "gene_name": "RAF24", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64768", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64768" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64768", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64768" } ] } ] }, { "uniprot_ac": "O64770", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64770", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64770" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64770", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64770" } ] } ] }, { "uniprot_ac": "O64771", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64771", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64771" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64771", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64771" } ] } ] }, { "uniprot_ac": "O64774", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64774", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64774" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64774", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64774" } ] } ] }, { "uniprot_ac": "O64776", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64776", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64776" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64776", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64776" } ] } ] }, { "uniprot_ac": "O64777", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64777", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64777" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64777", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64777" } ] } ] }, { "uniprot_ac": "O64778", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64778", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64778" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64778", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64778" } ] } ] }, { "uniprot_ac": "O64780", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64780", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64780" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64780", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64780" } ] } ] }, { "uniprot_ac": "O64781", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64781", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64781" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64781", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64781" } ] } ] }, { "uniprot_ac": "O64782", "gene_name": "SD129", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64782", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64782" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "O64782", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64782" } ] } ] }, { "uniprot_ac": "O64783", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64783", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64783" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64783", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64783" } ] } ] }, { "uniprot_ac": "O64784", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64784", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64784" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64784", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64784" } ] } ] }, { "uniprot_ac": "O64793", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64793", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64793" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64793", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64793" } ] } ] }, { "uniprot_ac": "O64794", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64794", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64794" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64794", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64794" } ] } ] }, { "uniprot_ac": "O64812", "gene_name": "SRK2J", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64812", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64812" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64812", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64812" } ] } ] }, { "uniprot_ac": "O64816", "gene_name": "CKA4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64816", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64816" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64816", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64816" } ] } ] }, { "uniprot_ac": "O64817", "gene_name": "CKA3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64817", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64817" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64817", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64817" } ] } ] }, { "uniprot_ac": "O64825", "gene_name": "LYK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64825", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64825" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64825", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64825" } ] } ] }, { "uniprot_ac": "O64842", "gene_name": "PBL12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64842", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64842" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64842", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64842" } ] } ] }, { "uniprot_ac": "O65238", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65238", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65238" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65238", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65238" } ] } ] }, { "uniprot_ac": "O65405", "gene_name": "CRK28", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65405", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65405" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65405", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65405" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65405", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65405" } ] } ] }, { "uniprot_ac": "O65440", "gene_name": "BAM3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440" } ] } ] }, { "uniprot_ac": "O65468", "gene_name": "CRK8", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65468", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65468" } ] } ] }, { "uniprot_ac": "O65472", "gene_name": "CRK12", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65472", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65472" } ] } ] }, { "uniprot_ac": "O65476", "gene_name": "CRK16", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65476" } ] } ] }, { "uniprot_ac": "O65479", "gene_name": "CRK20", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65479", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65479" } ] } ] }, { "uniprot_ac": "O65482", "gene_name": "CRK23", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65482", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65482" } ] } ] }, { "uniprot_ac": "O65483", "gene_name": "CRK24", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65483", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65483" } ] } ] }, { "uniprot_ac": "O65530", "gene_name": "PERK14", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65530", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65530" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65530", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65530" } ] } ] }, { "uniprot_ac": "O65554", "gene_name": "CIPK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65554", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65554" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65554", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65554" } ] } ] }, { "uniprot_ac": "O65924", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65924", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65924" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65924", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65924" } ] } ] }, { "uniprot_ac": "O80345", "gene_name": "CDKF-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80345", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80345" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "O80345", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80345" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "O80345", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80345" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "O80345", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80345" } ] } ] }, { "uniprot_ac": "O80396", "gene_name": "MKK3", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80396", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80396" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "O80396", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80396" } ] } ] }, { "uniprot_ac": "O80397", "gene_name": "MKK4", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80397", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80397" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "O80397", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80397" } ] } ] }, { "uniprot_ac": "O80528", "gene_name": "HASPIN", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80528", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80528" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80528", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80528" } ] } ] }, { "uniprot_ac": "O80673", "gene_name": "CRK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80673", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80673" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80673", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80673" } ] } ] }, { "uniprot_ac": "O80719", "gene_name": "CARK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80719", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80719" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80719", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80719" } ] } ] }, { "uniprot_ac": "O80888", "gene_name": "MAPKKK17", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80888", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80888" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "O80888", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80888" } ] } ] }, { "uniprot_ac": "O80902", "gene_name": "CIPK22", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80902", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80902" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80902", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80902" } ] } ] }, { "uniprot_ac": "O80939", "gene_name": "LECRK41", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80939", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80939" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80939", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80939" } ] } ] }, { "uniprot_ac": "O80963", "gene_name": "CCR2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963" } ] } ] }, { "uniprot_ac": "O81064", "gene_name": "PBL37", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81064", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81064" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81064", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81064" } ] } ] }, { "uniprot_ac": "O81067", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81067", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81067" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81067", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81067" } ] } ] }, { "uniprot_ac": "O81069", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069" } ] } ] }, { "uniprot_ac": "O81291", "gene_name": "LECRK44", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81291" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81291" } ] } ] }, { "uniprot_ac": "O81292", "gene_name": "LECRK43", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81292" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81292" } ] } ] }, { "uniprot_ac": "O81472", "gene_name": "MEKK2", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81472", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81472" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "O81472", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81472" } ] } ] }, { "uniprot_ac": "O81832", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81832", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81832" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81832", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81832" } ] } ] }, { "uniprot_ac": "O81833", "gene_name": "SD11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81833" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81833" } ] } ] }, { "uniprot_ac": "O81905", "gene_name": "SD18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81905", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81905" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81905", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81905" } ] } ] }, { "uniprot_ac": "O81906", "gene_name": "B120", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81906", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81906" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81906", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81906" } ] } ] }, { "uniprot_ac": "O82318", "gene_name": "SKM1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318" } ] } ] }, { "uniprot_ac": "O82754", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O82754", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82754" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O82754", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82754" } ] } ] }, { "uniprot_ac": "P0C5E2", "gene_name": "LRK10L-1.2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P0C5E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P0C5E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ] } ] }, { "uniprot_ac": "P0DKI6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P0DKI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DKI6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P0DKI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DKI6" } ] } ] }, { "uniprot_ac": "P24100", "gene_name": "CDKA-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P24100", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24100" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "P24100", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24100" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "P24100", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24100" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "P24100", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24100" } ] } ] }, { "uniprot_ac": "P25859", "gene_name": "CDKB1-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P25859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25859" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "P25859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25859" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "P25859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25859" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "P25859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25859" } ] } ] }, { "uniprot_ac": "P27450", "gene_name": "CST", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P27450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P27450" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P27450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P27450" } ] } ] }, { "uniprot_ac": "P42158", "gene_name": "CKL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P42158", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P42158" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P42158", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P42158" } ] } ] }, { "uniprot_ac": "P42818", "gene_name": "ATPK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P42818", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P42818" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P42818", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P42818" } ] } ] }, { "uniprot_ac": "P43288", "gene_name": "ASK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43288", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43288" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43288", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43288" } ] } ] }, { "uniprot_ac": "P43289", "gene_name": "ASK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43289", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43289" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43289", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43289" } ] } ] }, { "uniprot_ac": "P43291", "gene_name": "SRK2A", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43291" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43291" } ] } ] }, { "uniprot_ac": "P43292", "gene_name": "SRK2G", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43292" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43292" } ] } ] }, { "uniprot_ac": "P43293", "gene_name": "PBL11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43293", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43293" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43293", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43293" } ] } ] }, { "uniprot_ac": "P43294", "gene_name": "MHK", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43294", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43294" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "P43294", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43294" } ] } ] }, { "uniprot_ac": "P43298", "gene_name": "TMK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298" } ] } ] }, { "uniprot_ac": "P46573", "gene_name": "PBL10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P46573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P46573" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P46573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P46573" } ] } ] }, { "uniprot_ac": "P47735", "gene_name": "RLK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P47735", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47735" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "P47735", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47735" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "P47735", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47735" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P47735", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47735" } ] } ] }, { "uniprot_ac": "P51566", "gene_name": "AFC1", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "P51566", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51566" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "P51566", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51566" } ] } ] }, { "uniprot_ac": "P51567", "gene_name": "AFC2", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "P51567", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51567" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "P51567", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51567" } ] } ] }, { "uniprot_ac": "P51568", "gene_name": "AFC3", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "P51568", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51568" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "P51568", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51568" } ] } ] }, { "uniprot_ac": "P92937", "gene_name": "CIPK15", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P92937", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92937" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P92937", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92937" } ] } ] }, { "uniprot_ac": "P92958", "gene_name": "KIN11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P92958", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92958" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P92958", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92958" } ] } ] }, { "uniprot_ac": "P93025", "gene_name": "PHOT2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P93025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93025" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P93025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93025" } ] } ] }, { "uniprot_ac": "P93050", "gene_name": "RKF3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P93050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93050" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P93050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93050" } ] } ] }, { "uniprot_ac": "P93749", "gene_name": "CARK4", "activity": [ { "ec_number": "2.7.10.-", "activity": "", "evidence": [ { "id": "P93749", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93749" } ] } ] }, { "uniprot_ac": "P93756", "gene_name": "SD31", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P93756", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93756" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P93756", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93756" } ] } ] }, { "uniprot_ac": "P93759", "gene_name": "CPK14", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P93759", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93759" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P93759", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93759" } ] } ] }, { "uniprot_ac": "Q05609", "gene_name": "CTR1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q05609", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05609" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q05609", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05609" } ] } ] }, { "uniprot_ac": "Q05999", "gene_name": "D6PKL3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q05999", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05999" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q05999", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05999" } ] } ] }, { "uniprot_ac": "Q06548", "gene_name": "PBL9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q06548", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q06548", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ] } ] }, { "uniprot_ac": "Q06850", "gene_name": "CPK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q06850", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06850" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q06850", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06850" } ] } ] }, { "uniprot_ac": "Q08466", "gene_name": "CKA2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q08466", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08466" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q08466", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08466" } ] } ] }, { "uniprot_ac": "Q08467", "gene_name": "CKA1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q08467", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08467" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q08467", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08467" } ] } ] }, { "uniprot_ac": "Q0PW40", "gene_name": "CRK13", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ] } ] }, { "uniprot_ac": "Q0V7T5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0V7T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0V7T5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0V7T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0V7T5" } ] } ] }, { "uniprot_ac": "Q0WNY5", "gene_name": "WAKL18", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q0WNY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ] } ] }, { "uniprot_ac": "Q0WPH8", "gene_name": "NEK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0WPH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WPH8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0WPH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WPH8" } ] } ] }, { "uniprot_ac": "Q0WRY5", "gene_name": "PBL7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0WRY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WRY5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0WRY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WRY5" } ] } ] }, { "uniprot_ac": "Q0WVM4", "gene_name": "CIK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0WVM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WVM4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0WVM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WVM4" } ] } ] }, { "uniprot_ac": "Q1PDV6", "gene_name": "PBL27", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PDV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PDV6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PDV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PDV6" } ] } ] }, { "uniprot_ac": "Q1PE17", "gene_name": "CPK18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PE17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PE17" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PE17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PE17" } ] } ] }, { "uniprot_ac": "Q1PE89", "gene_name": "PBL24", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ] } ] }, { "uniprot_ac": "Q1PEM5", "gene_name": "PERK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PEM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PEM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ] } ] }, { "uniprot_ac": "Q1PFB9", "gene_name": "AGC1-7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PFB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PFB9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PFB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PFB9" } ] } ] }, { "uniprot_ac": "Q1PFH8", "gene_name": "CPK19", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PFH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PFH8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PFH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PFH8" } ] } ] }, { "uniprot_ac": "Q2MHE4", "gene_name": "HT1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2MHE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2MHE4" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2MHE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2MHE4" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "Q2MHE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2MHE4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q2MHE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2MHE4" } ] } ] }, { "uniprot_ac": "Q2QAV0", "gene_name": "TIO", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2QAV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2QAV0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q2QAV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2QAV0" } ] } ] }, { "uniprot_ac": "Q2V338", "gene_name": "WNK9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2V338", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V338" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q2V338", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V338" } ] } ] }, { "uniprot_ac": "Q2V419", "gene_name": "CDKB1-2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2V419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q2V419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q2V419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q2V419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ] } ] }, { "uniprot_ac": "Q2V452", "gene_name": "CIPK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2V452", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V452" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q2V452", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V452" } ] } ] }, { "uniprot_ac": "Q38868", "gene_name": "CPK9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38868", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38868" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38868", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38868" } ] } ] }, { "uniprot_ac": "Q38869", "gene_name": "CPK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38869", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38869" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38869", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38869" } ] } ] }, { "uniprot_ac": "Q38870", "gene_name": "CPK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38870", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38870" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38870", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38870" } ] } ] }, { "uniprot_ac": "Q38871", "gene_name": "CPK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38871", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38871" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38871", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38871" } ] } ] }, { "uniprot_ac": "Q38872", "gene_name": "CPK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38872", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38872" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38872", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38872" } ] } ] }, { "uniprot_ac": "Q38873", "gene_name": "CPK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38873", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38873" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38873", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38873" } ] } ] }, { "uniprot_ac": "Q38997", "gene_name": "KIN10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38997", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38997", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ] } ] }, { "uniprot_ac": "Q39008", "gene_name": "MEKK1", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39008", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39008" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "Q39008", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39008" } ] } ] }, { "uniprot_ac": "Q39010", "gene_name": "ASK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39010", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39010" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39010", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39010" } ] } ] }, { "uniprot_ac": "Q39011", "gene_name": "ASK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39011", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39011" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39011", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39011" } ] } ] }, { "uniprot_ac": "Q39012", "gene_name": "ASK9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39012", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39012" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39012", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39012" } ] } ] }, { "uniprot_ac": "Q39016", "gene_name": "CPK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39016", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39016", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ] } ] }, { "uniprot_ac": "Q39019", "gene_name": "ASK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39019", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39019", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ] } ] }, { "uniprot_ac": "Q39021", "gene_name": "MPK1", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39021", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39021" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39021", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39021" } ] } ] }, { "uniprot_ac": "Q39022", "gene_name": "MPK2", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39022", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39022" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39022", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39022" } ] } ] }, { "uniprot_ac": "Q39023", "gene_name": "MPK3", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39023" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39023" } ] } ] }, { "uniprot_ac": "Q39024", "gene_name": "MPK4", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39024", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39024", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ] } ] }, { "uniprot_ac": "Q39025", "gene_name": "MPK5", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39025" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39025" } ] } ] }, { "uniprot_ac": "Q39026", "gene_name": "MPK6", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39026", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39026" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39026", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39026" } ] } ] }, { "uniprot_ac": "Q39027", "gene_name": "MPK7", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39027", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39027" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39027", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39027" } ] } ] }, { "uniprot_ac": "Q39030", "gene_name": "ATPK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39030", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39030" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39030", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39030" } ] } ] }, { "uniprot_ac": "Q39050", "gene_name": "CKL11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39050" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39050" } ] } ] }, { "uniprot_ac": "Q39086", "gene_name": "SD17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ] } ] }, { "uniprot_ac": "Q39183", "gene_name": "D6PKL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39183", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39183" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39183", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39183" } ] } ] }, { "uniprot_ac": "Q39191", "gene_name": "WAK1", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q39191", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39191" } ] } ] }, { "uniprot_ac": "Q39192", "gene_name": "SRK2D", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39192", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39192" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39192", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39192" } ] } ] }, { "uniprot_ac": "Q39193", "gene_name": "SRK2I", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39193", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39193", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ] } ] }, { "uniprot_ac": "Q39202", "gene_name": "RLK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ] } ] }, { "uniprot_ac": "Q39203", "gene_name": "SD22", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39203", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39203", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ] } ] }, { "uniprot_ac": "Q39238", "gene_name": "TOUSLED", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39238", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39238" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39238", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39238" } ] } ] }, { "uniprot_ac": "Q3E884", "gene_name": "LECRK110", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3E884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E884" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3E884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E884" } ] } ] }, { "uniprot_ac": "Q3E8W4", "gene_name": "ANX2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3E8W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8W4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3E8W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8W4" } ] } ] }, { "uniprot_ac": "Q3E9C0", "gene_name": "CPK34", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3E9C0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9C0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3E9C0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9C0" } ] } ] }, { "uniprot_ac": "Q3E9X6", "gene_name": "CRK21", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q3E9X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ] } ] }, { "uniprot_ac": "Q3EBR4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3EBR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EBR4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3EBR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EBR4" } ] } ] }, { "uniprot_ac": "Q3ECH2", "gene_name": "LRK10L-2.8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ] } ] }, { "uniprot_ac": "Q3EDL4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3EDL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EDL4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3EDL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EDL4" } ] } ] }, { "uniprot_ac": "Q42371", "gene_name": "ERECTA", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ] } ] }, { "uniprot_ac": "Q42396", "gene_name": "CPK12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q42396", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42396" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q42396", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42396" } ] } ] }, { "uniprot_ac": "Q42438", "gene_name": "CPK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q42438", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42438" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q42438", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42438" } ] } ] }, { "uniprot_ac": "Q42479", "gene_name": "CPK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q42479", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42479" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q42479", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42479" } ] } ] }, { "uniprot_ac": "Q4V3C8", "gene_name": "PDPK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q4V3C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4V3C8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q4V3C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4V3C8" } ] } ] }, { "uniprot_ac": "Q5HZ38", "gene_name": "GRIK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5HZ38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5HZ38" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5HZ38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5HZ38" } ] } ] }, { "uniprot_ac": "Q5PP29", "gene_name": "PBL4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5PP29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5PP29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ] } ] }, { "uniprot_ac": "Q5XF24", "gene_name": "CKL13", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5XF24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF24" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5XF24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF24" } ] } ] }, { "uniprot_ac": "Q5XF57", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5XF57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF57" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5XF57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF57" } ] } ] }, { "uniprot_ac": "Q5XF79", "gene_name": "PBL18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5XF79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5XF79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ] } ] }, { "uniprot_ac": "Q64FQ2", "gene_name": "PID2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q64FQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q64FQ2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q64FQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q64FQ2" } ] } ] }, { "uniprot_ac": "Q66GN2", "gene_name": "LECRK64", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q66GN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q66GN2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q66GN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q66GN2" } ] } ] }, { "uniprot_ac": "Q683C9", "gene_name": "AUR2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q683C9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q683C9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q683C9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q683C9" } ] } ] }, { "uniprot_ac": "Q6ICW6", "gene_name": "WNK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q6ICW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ICW6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q6ICW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ICW6" } ] } ] }, { "uniprot_ac": "Q6NKZ9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q6NKZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NKZ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q6NKZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NKZ9" } ] } ] }, { "uniprot_ac": "Q6NLQ6", "gene_name": "CPK32", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q6NLQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NLQ6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q6NLQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NLQ6" } ] } ] }, { "uniprot_ac": "Q6NQ87", "gene_name": "CRK22", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q6NQ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ] } ] }, { "uniprot_ac": "Q6XAT2", "gene_name": "ERL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q6XAT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6XAT2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q6XAT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6XAT2" } ] } ] }, { "uniprot_ac": "Q7FK82", "gene_name": "LECRK12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q7FK82", "database": 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"L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84JQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84JQ4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q84JQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84JQ4" } ] } ] }, { "uniprot_ac": "Q84M93", "gene_name": "MPK17", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84M93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84M93" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q84M93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84M93" } ] } ] }, { "uniprot_ac": "Q84M95", "gene_name": "PBL28", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84M95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q84M95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ] } ] }, { "uniprot_ac": "Q84TI6", "gene_name": "CDKE-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84TI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q84TI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q84TI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q84TI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ] } ] }, { "uniprot_ac": "Q84VQ3", "gene_name": "CIPK26", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84VQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84VQ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q84VQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84VQ3" } ] } ] }, { "uniprot_ac": "Q84VX4", "gene_name": "MPS1", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84VX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84VX4" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q84VX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84VX4" } ] } ] }, { "uniprot_ac": "Q8GUH1", "gene_name": "PUB33", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GUH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q8GUH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ] } ] }, { "uniprot_ac": "Q8GWJ7", "gene_name": "CRK19", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GWJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GWJ7" } ] } ] }, { "uniprot_ac": "Q8GX23", "gene_name": "PERK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GX23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8GX23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ] } ] }, { "uniprot_ac": "Q8GXQ3", "gene_name": "WAKL6", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GXQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GXQ3" } ] } ] }, { "uniprot_ac": "Q8GXZ3", "gene_name": "PBL8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GXZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8GXZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ] } ] }, { "uniprot_ac": "Q8GY82", "gene_name": "CRK45", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GY82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GY82" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8GY82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GY82" } ] } ] }, { "uniprot_ac": "Q8GYA4", "gene_name": "CRK10", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GYA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYA4" } ] } ] }, { "uniprot_ac": "Q8GYF5", "gene_name": "WAKL21", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GYF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5" } ] } ] }, { "uniprot_ac": "Q8GYQ5", "gene_name": "MPK12", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GYQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYQ5" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q8GYQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYQ5" } ] } ] }, { "uniprot_ac": "Q8GZ99", "gene_name": "HPCA1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GZ99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GZ99" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8GZ99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GZ99" } ] } ] }, { "uniprot_ac": "Q8H186", "gene_name": "PBL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8H186", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H186" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8H186", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H186" } ] } ] }, { "uniprot_ac": "Q8H199", "gene_name": "CRK14", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8H199", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H199" } ] } ] }, { "uniprot_ac": "Q8H1D6", "gene_name": "RBK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8H1D6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1D6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8H1D6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1D6" } ] } ] }, { "uniprot_ac": "Q8H1E3", "gene_name": "PBL17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8H1E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1E3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8H1E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1E3" } ] } ] }, { "uniprot_ac": "Q8H1G6", "gene_name": "CARK7", "activity": [ { "ec_number": "2.7.10.-", "activity": "", "evidence": [ { "id": "Q8H1G6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1G6" } ] } ] }, { "uniprot_ac": "Q8L617", "gene_name": "SZE1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8L617", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8L617" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8L617", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8L617" } ] } ] }, { "uniprot_ac": "Q8L710", "gene_name": "CRK17", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8L710", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8L710" } ] } ] }, { "uniprot_ac": "Q8L7G3", "gene_name": "CRK7", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8L7G3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8L7G3" } ] } ] }, { "uniprot_ac": "Q8LEB6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LEB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LEB6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8LEB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LEB6" } ] } ] }, { "uniprot_ac": "Q8LF80", "gene_name": "CDKB2-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LF80" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q8LF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LF80" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q8LF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LF80" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q8LF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LF80" } ] } ] }, { "uniprot_ac": "Q8LG64", "gene_name": "CDKB2-2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LG64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LG64" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q8LG64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LG64" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q8LG64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LG64" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q8LG64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LG64" } ] } ] }, { "uniprot_ac": "Q8LPI7", "gene_name": "CKL4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LPI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPI7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8LPI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPI7" } ] } ] }, { "uniprot_ac": "Q8LPJ1", "gene_name": "CKL6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LPJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPJ1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8LPJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPJ1" } ] } ] }, { "uniprot_ac": "Q8LPS5", "gene_name": "SERK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LPS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPS5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8LPS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPS5" } ] } ] }, { "uniprot_ac": "Q8LST2", "gene_name": "WNK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LST2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LST2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8LST2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LST2" } ] } ] }, { "uniprot_ac": "Q8RWC9", "gene_name": "CIPK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWC9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWC9" } ] } ] }, { "uniprot_ac": "Q8RWG1", "gene_name": "ABC1K1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWG1" } ] }, { "ec_number": "2.7.-.-", "activity": "", "evidence": [ { "id": "Q8RWG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWG1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWG1" } ] } ] }, { "uniprot_ac": "Q8RWH3", "gene_name": "YAK1", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWH3" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "Q8RWH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWH3" } ] } ] }, { "uniprot_ac": "Q8RWL2", "gene_name": "CPK29", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWL2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWL2" } ] } ] }, { "uniprot_ac": "Q8RWL6", "gene_name": "STY17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWL6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWL6" } ] } ] }, { "uniprot_ac": "Q8RWW0", "gene_name": "ALE2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWW0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWW0" } ] } ] }, { "uniprot_ac": "Q8RWX4", "gene_name": "KOC1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWX4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWX4" } ] } ] }, { "uniprot_ac": "Q8RWZ5", "gene_name": "SD25", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWZ5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWZ5" } ] } ] }, { "uniprot_ac": "Q8RX66", "gene_name": "NEK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RX66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RX66" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RX66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RX66" } ] } ] }, { "uniprot_ac": "Q8RX80", "gene_name": "CRK18", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8RX80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RX80" } ] } ] }, { "uniprot_ac": "Q8RXC8", "gene_name": "RBK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RXC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXC8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RXC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXC8" } ] } ] }, { "uniprot_ac": "Q8RXE5", "gene_name": "WNK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RXE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXE5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RXE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXE5" } ] } ] }, { "uniprot_ac": "Q8RXG3", "gene_name": "MKK5", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RXG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXG3" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q8RXG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXG3" } ] } ] }, { "uniprot_ac": "Q8RXT4", "gene_name": "NEK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RXT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXT4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RXT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXT4" } ] } ] }, { "uniprot_ac": "Q8RY17", "gene_name": "WAKL22", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8RY17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY17" } ] } ] }, { "uniprot_ac": "Q8RY65", "gene_name": "CIK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RY65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY65" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RY65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY65" } ] } ] }, { "uniprot_ac": "Q8RY67", "gene_name": "WAKL14", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8RY67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY67" } ] } ] }, { "uniprot_ac": "Q8S8S7", "gene_name": "PUB34", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8S8S7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8S7" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q8S8S7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8S7" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "Q8S8S7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8S7" } ] } ] }, { "uniprot_ac": "Q8S8Y8", "gene_name": "WNK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8S8Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8Y8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8S8Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8Y8" } ] } ] }, { "uniprot_ac": "Q8S8Y9", "gene_name": "WNK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8S8Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8Y9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8S8Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8Y9" } ] } ] }, { "uniprot_ac": "Q8S9L6", "gene_name": "CRK29", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8S9L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S9L6" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8S9L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S9L6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8S9L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S9L6" } ] } ] }, { "uniprot_ac": "Q8VYA3", "gene_name": "WAKL10", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8VYA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYA3" } ] } ] }, { "uniprot_ac": "Q8VYG0", "gene_name": "LRK10L-1.3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VYG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYG0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VYG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYG0" } ] } ] }, { "uniprot_ac": "Q8VYK9", "gene_name": "CKL12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VYK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYK9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VYK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYK9" } ] } ] }, { "uniprot_ac": "Q8VYT3", "gene_name": "CIK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VYT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VYT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ] } ] }, { "uniprot_ac": "Q8VYY5", "gene_name": "NCRK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VYY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYY5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VYY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYY5" } ] } ] }, { "uniprot_ac": "Q8VZD5", "gene_name": "ASK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VZD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZD5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VZD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZD5" } ] } ] }, { "uniprot_ac": "Q8VZF4", "gene_name": "ZRK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VZF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZF4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VZF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZF4" } ] } ] }, { "uniprot_ac": "Q8VZG8", "gene_name": "MIK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ] } ] }, { "uniprot_ac": "Q8VZJ9", "gene_name": "CRCK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VZJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZJ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VZJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZJ9" } ] } ] }, { "uniprot_ac": "Q8W1D5", "gene_name": "CIPK25", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W1D5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W1D5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8W1D5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W1D5" } ] } ] }, { "uniprot_ac": "Q8W490", "gene_name": "PEPKR2", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8W490", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W490" } ] } ] }, { "uniprot_ac": "Q8W4G6", "gene_name": "CRK15", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8W4G6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4G6" } ] } ] }, { "uniprot_ac": "Q8W4I7", "gene_name": "CPK13", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4I7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4I7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8W4I7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4I7" } ] } ] }, { "uniprot_ac": "Q8W4J2", "gene_name": "MPK16", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4J2" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q8W4J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4J2" } ] } ] }, { "uniprot_ac": "Q8W4L3", "gene_name": "BSK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4L3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4L3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8W4L3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4L3" } ] } ] }, { "uniprot_ac": "Q8W4P1", "gene_name": "CDKC-2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4P1" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q8W4P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4P1" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q8W4P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4P1" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q8W4P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4P1" } ] } ] }, { "uniprot_ac": "Q8W4S5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4S5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8W4S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4S5" } ] } ] }, { "uniprot_ac": "Q93V58", "gene_name": "GRIK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93V58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93V58" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93V58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93V58" } ] } ] }, { "uniprot_ac": "Q93VD3", "gene_name": "CIPK23", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93VD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93VD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ] } ] }, { "uniprot_ac": "Q93VJ2", "gene_name": "IRE1B", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93VJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VJ2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93VJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VJ2" } ] }, { "ec_number": "3.1.26.-", "activity": "", "evidence": [ { "id": "Q93VJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VJ2" } ] } ] }, { "uniprot_ac": "Q93VK0", "gene_name": "PPCK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93VK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VK0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93VK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VK0" } ] } ] }, { "uniprot_ac": "Q93Y08", "gene_name": "ABC1K8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93Y08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Y08" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93Y08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Y08" } ] } ] }, { "uniprot_ac": "Q93YN1", "gene_name": "CRPK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93YN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93YN1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93YN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93YN1" } ] } ] }, { "uniprot_ac": "Q93Z18", "gene_name": "CKL3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93Z18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Z18" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93Z18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Z18" } ] } ] }, { "uniprot_ac": "Q93Z30", "gene_name": "BHP", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93Z30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Z30" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93Z30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Z30" } ] } ] }, { "uniprot_ac": "Q93ZS4", "gene_name": "CIK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93ZS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93ZS4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93ZS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93ZS4" } ] } ] }, { "uniprot_ac": "Q940A2", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q940A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940A2" } ] }, { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "Q940A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940A2" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "Q940A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940A2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q940A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940A2" } ] } ] }, { "uniprot_ac": "Q940H6", "gene_name": "SRK2E", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q940H6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940H6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q940H6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940H6" } ] } ] }, { "uniprot_ac": "Q944A7", "gene_name": "BSK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q944A7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q944A7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ] } ] }, { "uniprot_ac": "Q944Q0", "gene_name": "WNK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q944Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q944Q0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q944Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q944Q0" } ] } ] }, { "uniprot_ac": "Q94A06", "gene_name": "MKK1", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94A06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94A06" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q94A06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94A06" } ] } ] }, { "uniprot_ac": "Q94AG2", "gene_name": "SERK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ] } ] }, { "uniprot_ac": "Q94C25", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94C25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94C25" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q94C25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94C25" } ] } ] }, { "uniprot_ac": "Q94C40", "gene_name": "CIPK17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94C40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94C40" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q94C40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94C40" } ] } ] }, { "uniprot_ac": "Q94CG0", "gene_name": "CIPK21", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94CG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94CG0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q94CG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94CG0" } ] } ] }, { "uniprot_ac": "Q94F62", "gene_name": "BAK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94F62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q94F62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94F62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "Q94F62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ] } ] }, { "uniprot_ac": "Q96285", "gene_name": "LECRK55", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q96285", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96285" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q96285", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96285" } ] } ] }, { "uniprot_ac": "Q96287", "gene_name": "ASK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q96287", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96287" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q96287", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96287" } ] } ] }, { "uniprot_ac": "Q9ASQ5", "gene_name": "CRCK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9ASQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ASQ5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9ASQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ASQ5" } ] } ] }, { "uniprot_ac": "Q9ASQ6", "gene_name": "RFK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9ASQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ASQ6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9ASQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ASQ6" } ] } ] }, { "uniprot_ac": "Q9C562", "gene_name": "CIPK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C562", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C562" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C562", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C562" } ] } ] }, { "uniprot_ac": "Q9C5C0", "gene_name": "MPK18", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C5C0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5C0" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q9C5C0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5C0" } ] } ] }, { "uniprot_ac": "Q9C5H5", "gene_name": "MAPKKK5", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C5H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5H5" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "Q9C5H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5H5" } ] } ] }, { "uniprot_ac": "Q9C5S2", "gene_name": "IRE1A", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C5S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5S2" } ] }, { "ec_number": "3.1.26.-", "activity": "", "evidence": [ { "id": "Q9C5S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5S2" } ] } ] }, { "uniprot_ac": "Q9C5S8", "gene_name": "CRK5", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9C5S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5S8" } ] } ] }, { "uniprot_ac": "Q9C5S9", "gene_name": "CRK6", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9C5S9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5S9" } ] } ] }, { "uniprot_ac": "Q9C660", "gene_name": "PERK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C660", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C660" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C660", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C660" } ] } ] }, { "uniprot_ac": "Q9C6K9", "gene_name": "LRK10L-1.1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C6K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C6K9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C6K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C6K9" } ] } ] }, { "uniprot_ac": "Q9C6P3", "gene_name": "CPK33", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C6P3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C6P3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C6P3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C6P3" } ] } ] }, { "uniprot_ac": "Q9C7S5", "gene_name": "PSY1R", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C7S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C7S5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C7S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C7S5" } ] } ] }, { "uniprot_ac": "Q9C821", "gene_name": "PERK15", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C821", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C821" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C821", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C821" } ] } ] }, { "uniprot_ac": "Q9C8M5", "gene_name": "WAG1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C8M5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8M5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C8M5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8M5" } ] } ] }, { "uniprot_ac": "Q9C902", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C902", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C902" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C902", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C902" } ] } ] }, { "uniprot_ac": "Q9C958", "gene_name": "SRK2B", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C958", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C958" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C958", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C958" } ] } ] }, { "uniprot_ac": "Q9C9L5", "gene_name": "WAKL9", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9C9L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9L5" } ] } ] }, { "uniprot_ac": "Q9C9M7", "gene_name": "CDKD-2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C9M7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9M7" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q9C9M7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9M7" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q9C9M7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9M7" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q9C9M7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9M7" } ] } ] }, { "uniprot_ac": "Q9C9U2", "gene_name": "CDKD-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C9U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U2" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q9C9U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U2" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q9C9U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U2" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q9C9U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U2" } ] } ] }, { "uniprot_ac": "Q9C9U4", "gene_name": "MPK15", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C9U4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U4" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q9C9U4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U4" } ] } ] }, { "uniprot_ac": "Q9C9U5", "gene_name": "SIS8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C9U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C9U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U5" } ] } ] }, { "uniprot_ac": "Q9CAC3", "gene_name": "CRK43", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9CAC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAC3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9CAC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAC3" } ] } ] }, { "uniprot_ac": "Q9CAD5", "gene_name": "YDA", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9CAD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAD5" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "Q9CAD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAD5" } ] } ] }, { "uniprot_ac": "Q9CAG1", "gene_name": "CDKG2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9CAG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAG1" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q9CAG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAG1" } ] } ] }, { "uniprot_ac": "Q9CAH1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9CAH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAH1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9CAH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAH1" } ] } ] }, { "uniprot_ac": "Q9CAI5", "gene_name": "CKL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9CAI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAI5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9CAI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAI5" } ] } ] }, { "uniprot_ac": "Q9CAL2", "gene_name": "CRK3", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9CAL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAL2" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9CAL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAL2" } ] }, { 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] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9CAV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAV6" } ] } ] }, { "uniprot_ac": "Q9FE20", "gene_name": "PBS1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FE20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FE20" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FE20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FE20" } ] } ] }, { "uniprot_ac": "Q9FF29", "gene_name": "PR5K", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FF29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF29" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FF29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF29" } ] } ] }, { "uniprot_ac": "Q9FF31", "gene_name": "LRK10L-2.1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FF31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF31" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FF31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF31" } ] } ] }, { "uniprot_ac": "Q9FFH8", "gene_name": "CKL7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FFH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFH8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FFH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFH8" } ] } ] }, { "uniprot_ac": "Q9FFP9", "gene_name": "SRK2H", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FFP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFP9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FFP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFP9" } ] } ] }, { "uniprot_ac": "Q9FFW5", "gene_name": "PERK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FFW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFW5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FFW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFW5" } ] } ] }, { "uniprot_ac": "Q9FG33", "gene_name": "LECRKS5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FG33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG33" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FG33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG33" } ] } ] }, { "uniprot_ac": "Q9FG74", "gene_name": "D6PK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FG74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG74" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FG74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG74" } ] } ] }, { "uniprot_ac": "Q9FGB1", "gene_name": "CBC2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FGB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGB1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FGB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGB1" } ] } ] }, { "uniprot_ac": "Q9FGC3", "gene_name": "MEE13.6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FGC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGC3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FGC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGC3" } ] } ] }, { "uniprot_ac": "Q9FGW5", "gene_name": "CDKG1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FGW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGW5" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q9FGW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGW5" } ] } ] }, { "uniprot_ac": "Q9FHD7", "gene_name": "BSK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FHD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHD7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FHD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHD7" } ] } ] }, { "uniprot_ac": "Q9FHG4", "gene_name": "LECRKS7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FHG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHG4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FHG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHG4" } ] } ] }, { "uniprot_ac": "Q9FHT0", "gene_name": "MNJ8.10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FHT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHT0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FHT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHT0" } ] } ] }, { "uniprot_ac": "Q9FHX3", "gene_name": "LECRKS6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FHX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHX3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FHX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHX3" } ] } ] }, { "uniprot_ac": "Q9FIF0", "gene_name": "LECRK22", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FIF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIF0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FIF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIF0" } ] } ] }, { "uniprot_ac": "Q9FIF1", "gene_name": "LECRK21", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FIF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIF1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FIF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIF1" } ] } ] }, { "uniprot_ac": "Q9FII5", "gene_name": "TDR", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FII5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FII5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FII5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FII5" } ] } ] }, { "uniprot_ac": "Q9FIJ6", "gene_name": "CCR4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FIJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIJ6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FIJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIJ6" } ] } ] }, { "uniprot_ac": "Q9FIL1", "gene_name": "BSK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FIL1", "database": "UniProtKB", "url": 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"uniprot_ac": "Q9FJ54", "gene_name": "CIPK20", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FJ54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJ54" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FJ54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJ54" } ] } ] }, { "uniprot_ac": "Q9FJ55", "gene_name": "CIPK19", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FJ55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJ55" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FJ55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJ55" } ] } ] }, { "uniprot_ac": "Q9FJI4", "gene_name": "LECRK111", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FJI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJI4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FJI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJI4" } ] } ] }, { "uniprot_ac": "Q9FJV0", "gene_name": "MKK6", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FJV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJV0" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q9FJV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJV0" } ] } ] }, { "uniprot_ac": "Q9FK63", "gene_name": "CAMRLK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FK63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FK63" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FK63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FK63" } ] } ] }, { "uniprot_ac": "Q9FKG5", "gene_name": "PUB51", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9FKG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG5" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9FKG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG5" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "Q9FKG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG5" } ] } ] }, { "uniprot_ac": "Q9FKG6", "gene_name": "PUB52", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9FKG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG6" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9FKG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG6" } ] } ] }, { "uniprot_ac": "Q9FKS4", "gene_name": "ATR", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FKS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKS4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FKS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKS4" } ] } ] }, { "uniprot_ac": "Q9FKW4", "gene_name": "CPK28", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FKW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FKW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ] } ] }, { "uniprot_ac": "Q9FL28", "gene_name": "FLS2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FL28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FL28" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FL28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FL28" } ] } ] }, { "uniprot_ac": "Q9FLV4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FLV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLV4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FLV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLV4" } ] } ] }, { "uniprot_ac": "Q9FLZ3", "gene_name": "KIN12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FLZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FLZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ3" } ] } ] }, { "uniprot_ac": "Q9FM85", "gene_name": "PBL16", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FM85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FM85" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FM85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FM85" } ] } ] }, { "uniprot_ac": "Q9FMP5", "gene_name": "CPK17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FMP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMP5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FMP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMP5" } ] } ] }, { "uniprot_ac": "Q9FMY3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FMY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMY3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FMY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMY3" } ] } ] }, { "uniprot_ac": "Q9FN37", "gene_name": "PSKR2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FN37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN37" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FN37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN37" } ] } ] }, { "uniprot_ac": "Q9FN93", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FN93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN93" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FN93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN93" } ] } ] }, { "uniprot_ac": "Q9FN94", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN94" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN94" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN94" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "Q9FN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN94" } ] } ] }, { "uniprot_ac": "Q9FNE1", "gene_name": "CRK42", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9FNE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNE1" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FNE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNE1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FNE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNE1" } ] } ] }, { "uniprot_ac": "Q9FPR3", "gene_name": "EDR1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FPR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FPR3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FPR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FPR3" } ] } ] }, { "uniprot_ac": "Q9FR53", "gene_name": "TOR", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FR53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FR53" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FR53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FR53" } ] } ] }, { "uniprot_ac": "Q9FRS6", "gene_name": "PXL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FRS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FRS6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FRS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FRS6" } ] } ] }, { "uniprot_ac": "Q9FVS6", "gene_name": "ASK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FVS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVS6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FVS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVS6" } ] } ] }, { "uniprot_ac": "Q9FX43", "gene_name": "MKK9", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FX43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q9FX43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ] } ] }, { "uniprot_ac": "Q9FX86", "gene_name": "CRK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FX86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX86" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FX86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX86" } ] } ] }, { "uniprot_ac": "Q9FX99", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FX99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX99" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FX99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX99" } ] } ] }, { "uniprot_ac": "Q9FXF2", "gene_name": "RKF1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FXF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXF2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FXF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXF2" } ] } ] }, { "uniprot_ac": "Q9FY48", "gene_name": "KEG", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FY48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FY48" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9FY48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FY48" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FY48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FY48" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "Q9FY48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FY48" } ] } ] }, { "uniprot_ac": "Q9FYC5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FYC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYC5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FYC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYC5" } ] } ] }, { "uniprot_ac": "Q9FYK0", "gene_name": "TMK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FYK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYK0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FYK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYK0" } ] } ] }, { "uniprot_ac": "Q9FZ36", "gene_name": "ANP2", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FZ36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ36" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "Q9FZ36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ36" } ] } ] }, { "uniprot_ac": "Q9FZ59", "gene_name": "PEPR2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FZ59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ59" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FZ59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ59" } ] } ] }, { "uniprot_ac": "Q9FZB1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FZB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZB1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FZB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZB1" } ] } ] }, { "uniprot_ac": "Q9FZB8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FZB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZB8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FZB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZB8" } ] } ] }, { "uniprot_ac": "Q9LDI3", "gene_name": "CIPK24", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LDI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDI3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LDI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDI3" } ] } ] }, { "uniprot_ac": "Q9LDM5", "gene_name": "CRK31", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LDM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDM5" } ] } ] }, { "uniprot_ac": "Q9LDN1", "gene_name": "CRK33", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LDN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDN1" } ] } ] }, { "uniprot_ac": "Q9LDN6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LDN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDN6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LDN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDN6" } ] } ] }, { "uniprot_ac": "Q9LDQ1", "gene_name": "PEPKR1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LDQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDQ1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LDQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDQ1" } ] } ] }, { "uniprot_ac": "Q9LDQ3", "gene_name": "CRK34", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LDQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDQ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LDQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDQ3" } ] } ] }, { "uniprot_ac": "Q9LDS6", "gene_name": "CRK32", "activity": [ { "ec_number": "2.7.11.-", "activity": "", 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"https://www.uniprot.org/uniprotkb/Q9LFA2" } ] } ] }, { "uniprot_ac": "Q9LFD0", "gene_name": "BSK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LFD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFD0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LFD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFD0" } ] } ] }, { "uniprot_ac": "Q9LFG1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LFG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFG1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LFG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFG1" } ] } ] }, { "uniprot_ac": "Q9LFH9", "gene_name": "LECRK81", 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{ "id": "Q9LMN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMN7" } ] } ] }, { "uniprot_ac": "Q9LMN8", "gene_name": "WAK3", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LMN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMN8" } ] } ] }, { "uniprot_ac": "Q9LMP1", "gene_name": "WAK2", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LMP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMP1" } ] } ] }, { "uniprot_ac": "Q9LMT0", "gene_name": "CDKD-3", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT0" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q9LMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT0" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q9LMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT0" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q9LMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT0" } ] } ] }, { "uniprot_ac": "Q9LMT9", "gene_name": "WAKL13", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LMT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT9" } ] } ] }, { "uniprot_ac": "Q9LN59", "gene_name": "WAKL11", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LN59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LN59" } ] } ] }, { "uniprot_ac": "Q9LP24", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LP24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LP24" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LP24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LP24" } ] } ] }, { "uniprot_ac": "Q9LP51", "gene_name": "CIPK18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LP51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LP51" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LP51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LP51" } ] } ] }, { "uniprot_ac": "Q9LPQ3", "gene_name": "MKK7", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LPQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPQ3" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q9LPQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPQ3" } ] } ] }, { "uniprot_ac": "Q9LPT1", "gene_name": "PRK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LPT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPT1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LPT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPT1" } ] } ] }, { "uniprot_ac": "Q9LPZ3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LPZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPZ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LPZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPZ3" } ] } ] }, { "uniprot_ac": "Q9LPZ9", "gene_name": "SD113", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LPZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPZ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LPZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPZ9" } ] } ] }, { "uniprot_ac": "Q9LQ11", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LQ11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQ11" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LQ11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQ11" } ] } ] }, { "uniprot_ac": "Q9LQM8", "gene_name": "MKK10", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LQM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQM8" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q9LQM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQM8" } ] } ] }, { "uniprot_ac": "Q9LQQ8", "gene_name": "PBL5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LQQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQQ8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LQQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQQ8" } ] } ] }, { "uniprot_ac": "Q9LQQ9", "gene_name": "MPK13", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LQQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQQ9" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q9LQQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQQ9" } ] } ] }, { "uniprot_ac": "Q9LRP3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LRP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LRP3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LRP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LRP3" } ] } ] }, { "uniprot_ac": "Q9LRY1", "gene_name": "PBL25", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LRY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LRY1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LRY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LRY1" } ] } ] }, { "uniprot_ac": "Q9LS26", "gene_name": "BSK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LS26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LS26" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LS26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LS26" } ] } ] }, { "uniprot_ac": "Q9LS95", "gene_name": "PERK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LS95" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LS95" } ] } ] }, { "uniprot_ac": "Q9LSE1", "gene_name": "CDG1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSE1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSE1" } ] } ] }, { "uniprot_ac": "Q9LSF1", "gene_name": "OXI1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSF1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSF1" } ] } ] }, { "uniprot_ac": "Q9LSL5", "gene_name": "LECRK92", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSL5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSL5" } ] } ] }, { "uniprot_ac": "Q9LSR8", "gene_name": "LECRK19", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSR8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSR8" } ] } ] }, { "uniprot_ac": "Q9LSR9", "gene_name": "LECRK18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSR9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSR9" } ] } ] }, { "uniprot_ac": "Q9LSS0", "gene_name": "LECRK17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSS0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSS0" } ] } ] }, { "uniprot_ac": "Q9LSV3", "gene_name": "WAKL16", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LSV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSV3" } ] } ] }, { "uniprot_ac": "Q9LSX4", "gene_name": "CKL8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSX4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSX4" } ] } ] }, { "uniprot_ac": "Q9LT35", "gene_name": "NEK6", "activity": [ { "ec_number": "2.7.11.34", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LT35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT35" } ] }, { "ec_number": "2.7.11.34", "activity": "", "evidence": [ { "id": "Q9LT35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT35" } ] } ] }, { "uniprot_ac": "Q9LT38", "gene_name": "UCNL", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LT38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT38" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LT38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT38" } ] } ] }, { "uniprot_ac": "Q9LT96", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LT96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT96" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LT96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT96" } ] } ] }, { "uniprot_ac": "Q9LTC0", "gene_name": "PBL19", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LTC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LTC0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LTC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LTC0" } ] } ] }, { "uniprot_ac": "Q9LTW5", "gene_name": "AGC1-5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LTW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LTW5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LTW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LTW5" } ] } ] }, { "uniprot_ac": "Q9LU47", "gene_name": "PUB53", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LU47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LU47" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9LU47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LU47" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "Q9LU47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LU47" } ] } ] }, { "uniprot_ac": "Q9LUC3", "gene_name": "MPK19", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LUC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUC3" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q9LUC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUC3" } ] } ] }, { "uniprot_ac": "Q9LUI6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LUI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUI6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LUI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUI6" } ] } ] }, { "uniprot_ac": "Q9LUK3", "gene_name": "PAXL", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LUK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUK3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LUK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUK3" } ] } ] }, { "uniprot_ac": "Q9LUL2", "gene_name": "WAG2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", 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} ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q9LV37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LV37" } ] } ] }, { "uniprot_ac": "Q9LV48", "gene_name": "PERK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LV48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LV48" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LV48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LV48" } ] } ] }, { "uniprot_ac": "Q9LVL5", "gene_name": "WNK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LVL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LVL5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LVL5", "database": "UniProtKB", 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ADP + H(+).", "evidence": [ { "id": "Q9SJG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SJG2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SJG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SJG2" } ] } ] }, { "uniprot_ac": "Q9SJG9", "gene_name": "MPK20", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SJG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SJG9" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q9SJG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SJG9" } ] } ] }, { "uniprot_ac": "Q9SJM3", "gene_name": "KIPK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SJM3", "database": "UniProtKB", "url": 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"https://www.uniprot.org/uniprotkb/Q9SSL9" } ] } ] }, { "uniprot_ac": "Q9STF0", "gene_name": "LECRKS3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9STF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STF0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9STF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STF0" } ] } ] }, { "uniprot_ac": "Q9STJ8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9STJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STJ8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9STJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STJ8" } ] } ] }, { "uniprot_ac": "Q9STK6", "gene_name": "WNK3", 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O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SUA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SUA3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SUA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SUA3" } ] } ] }, { "uniprot_ac": "Q9SUL7", "gene_name": "CIPK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SUL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SUL7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SUL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SUL7" } ] } ] }, { "uniprot_ac": "Q9SV05", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SV05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV05" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SV05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV05" } ] } ] }, { "uniprot_ac": "Q9SV69", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SV69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV69" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SV69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV69" } ] } ] }, { "uniprot_ac": "Q9SV83", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SV83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV83" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SV83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV83" } ] } ] }, { "uniprot_ac": "Q9SVY5", "gene_name": "ZRK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SVY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SVY5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SVY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SVY5" } ] } ] }, { "uniprot_ac": "Q9SW11", "gene_name": "PUB35", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9SW11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SW11" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9SW11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SW11" } ] } ] }, { "uniprot_ac": "Q9SX31", "gene_name": "PERK9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SX31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SX31" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SX31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SX31" } ] } ] }, { "uniprot_ac": "Q9SX57", "gene_name": "CARK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SX57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SX57" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SX57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SX57" } ] } ] }, { 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ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SXB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SXB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB5" } ] } ] }, { "uniprot_ac": "Q9SXB8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SXB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SXB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB8" } ] } ] }, { "uniprot_ac": "Q9SY89", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SY89", "database": "UniProtKB", "url": 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"id": "Q9SY95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SY95" } ] } ] }, { "uniprot_ac": "Q9SYA0", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SYA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYA0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SYA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYA0" } ] } ] }, { "uniprot_ac": "Q9SYB9", "gene_name": "UNC", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SYB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYB9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SYB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYB9" } ] } ] }, { 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"MLSSSPAVTTASHLHPPPSPETYQIPLNLLSSPHITRRDLFKTLSVCIATPSLSVSIAAPANARGLFQMPPLRLSNRYYLVRAGESDYESLGIINTNPVAKTSVDSGLSEKGKKQTLRAALQLKAMGACDRNCWLWPSITQRAYQAAEIIAAINGISRSYIVPEYSFLDARGLGAYEGKKLESISEVYALDSISMKTKPPPISDGTPNESVSDVFVRVTQLMSILETQYSEDTIVIVSPDSDNLSVLQAGIQGLDLRRHSELYFGPGEVRLLDANSIPVYKQPASAVYKCKKPPNCD", "length": 297, "header": "tr|Q9FM11-1|Q9FM11_ARATH Isoform 1 of Phosphoglycerate mutase family protein OS=Arabidopsis thaliana OX=3702 GN=MQB2.16 PE=1 SV=1 CANONICAL=Q9FM11-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BEB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEB7/entry", "sequence": { "sequence": "MCFWLLFFLGSSYYLVRAGESDYESLGIINTNPVAKTSVDSGLSEKGKKQTLRAALQLKAMGACDRNCWLWPSITQRAYQAAEIIAAINGISRSYIVPEYSFLDARGLGAYEGKKLESISEVYALDSISMKTKPPPISDGTPNESVSDVFVRVTQLMSILETQYSEDTIVIVSPDSDNLSVLQAGIQGLDLRRHSELYFGPGEVRLLDANSIPVYKQPASAVYKCKKPPNCD", "length": 232, "header": "tr|A0A1P8BEB7-1|Q9FM11_ARATH Computationally mapped isoform of Phosphoglycerate mutase family protein OS=Arabidopsis thaliana 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Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", 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"MAIEDYENPNREIKPKNRRFMEGENQWPIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLSEHENHRTIQIRISSYHNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKGFTNACMVCYRGLAENCFRFCSIGCKVAGTSGVFQKRVKHTTNDSDNSNNSSGVENNSSGAENGNSNLQSLSPPTPQFPPRSLRKRLRKGIPHRAPFS", "length": 226, "header": "tr|Q9FIQ4-1|Q9FIQ4_ARATH Isoform 1 of PLATZ transcription factor family protein OS=Arabidopsis thaliana OX=3702 GN=MZA15.12 PE=4 SV=1 CANONICAL=Q9FIQ4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BEP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEP3/entry", "sequence": { "sequence": "MAIEDYENPNREIKPKNRRFMEGENQWPIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLSEHENHRTIQIRISSYHNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKGFTNACMVCYRGLAENCFRFCSIGCKVHLPTYTPIIFTR", "length": 167, "header": "tr|A0A1P8BEP3-1|Q9FIQ4_ARATH Computationally mapped isoform of PLATZ transcription factor family protein OS=Arabidopsis thaliana OX=3702 GN=MZA15.12 PE=4 SV=1 CANONICAL=Q9FIQ4-1" }, "locus": { "chromosome": "5", "start_pos": 18952603, "end_pos": 18954692, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46710.2", "url": "https://www.ensemblgenomes.org/id/AT5G46710.2" }, { "database": "Ensembl Peptide", "id": "AT5G46710.2", "url": "https://www.ensemblgenomes.org/id/AT5G46710.2" } ] } }, { "isoform_ac": "A0A1P8BEP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEP4/entry", "sequence": { "sequence": "MLCLQEGENQWPIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLSEHENHRTIQIRISSYHNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKGFTNACMVCYRGLAENCFRFCSIGCKVAGTSGVFQKRVKHTTNDSDNSNNSSGVENNSSGAENGNSNLQSLSPPTPQFPPRSLRKRLRKGIPHRAPFS", "length": 210, "header": "tr|A0A1P8BEP4-1|Q9FIQ4_ARATH Computationally mapped isoform of PLATZ transcription factor family protein OS=Arabidopsis thaliana OX=3702 GN=MZA15.12 PE=4 SV=1 CANONICAL=Q9FIQ4-1" }, "locus": { "chromosome": "5", "start_pos": 18952616, "end_pos": 18954692, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46710.3", "url": "https://www.ensemblgenomes.org/id/AT5G46710.3" }, { "database": "Ensembl Peptide", "id": "AT5G46710.3", "url": "https://www.ensemblgenomes.org/id/AT5G46710.3" } ] } }, { "isoform_ac": "Q9FIQ4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIQ4/entry", "sequence": { "sequence": "MAIEDYENPNREIKPKNRRFMEGENQWPIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLSEHENHRTIQIRISSYHNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKGFTNACMVCYRGLAENCFRFCSIGCKVAGTSGVFQKRVKHTTNDSDNSNNSSGVENNSSGAENGNSNLQSLSPPTPQFPPRSLRKRLRKGIPHRAPFS", "length": 226, "header": "tr|Q9FIQ4-1|Q9FIQ4_ARATH Isoform 1 of PLATZ transcription factor family protein OS=Arabidopsis thaliana OX=3702 GN=MZA15.12 PE=4 SV=1 CANONICAL=Q9FIQ4-1" }, "locus": { "chromosome": "5", "start_pos": 18952603, "end_pos": 18954692, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46710.1", "url": "https://www.ensemblgenomes.org/id/AT5G46710.1" }, { "database": "Ensembl Peptide", "id": "AT5G46710.1", "url": "https://www.ensemblgenomes.org/id/AT5G46710.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BEP3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BEP3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete 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"sequence": { "sequence": "MGRSNSQCPSHWILLCFFISSQFWGFSLPTSIIQQNLEGFKDPEDGFHEIHCSRERSRVAWKIIQEYLMPYVEKERYQLPSTCRVHRDNDIYREQEEHKLRSDINEWRCGFCKKAFYEEKYLDKHFDSRHYNLLNASHGKCLSDLCGALHCDLVVDTARLKSKCNPAAAAKNRHLCESLANSCFPVNKGSSANRLHDFFLRQFCDAHTCSGGSKPLSQKPKKRSIVYIIFSIIVLVVLLLYYSFVYLFRRGLKRRSQDLKRIRHNGLKKKPF", "length": 272, "header": "tr|Q9FM27-1|Q9FM27_ARATH Isoform 1 of Zinc finger (C2H2 type) family protein OS=Arabidopsis thaliana OX=3702 GN=MNF13.27 PE=1 SV=1 CANONICAL=Q9FM27-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BER0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BER0/entry", "sequence": { "sequence": "MGRSNSQCPSHWILLCFFISSQFWGFSLPTSIIQQNLEGFKDPEDGFHEIHCSRERSRVAWKIIQEYLMPYVEKERYQLPSTCRVHRDNDIYREQEEHKLRSDINEWRCGFCKKAFYEEKYLDKHFDSRHYNLLNASHGKCLSDLCGALHCDLVVDTARLKSKCNPAAAAKNRHLCESLANSCFPVNKGSSANRLHGIRTFLNFTILFQQFLLVLIHKDSPLLLGFKLYNCRLLRGGF", "length": 238, "header": "tr|A0A1P8BER0-1|Q9FM27_ARATH Computationally mapped isoform of Zinc finger (C2H2 type) family protein OS=Arabidopsis thaliana OX=3702 GN=MNF13.27 PE=1 SV=1 CANONICAL=Q9FM27-1" }, "locus": { "chromosome": "5", "start_pos": 16294990, "end_pos": 16297058, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G40710.2", "url": "https://www.ensemblgenomes.org/id/AT5G40710.2" }, { "database": "Ensembl Peptide", "id": "AT5G40710.2", "url": "https://www.ensemblgenomes.org/id/AT5G40710.2" } ] } }, { "isoform_ac": "Q9FM27-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM27/entry", "sequence": { "sequence": "MGRSNSQCPSHWILLCFFISSQFWGFSLPTSIIQQNLEGFKDPEDGFHEIHCSRERSRVAWKIIQEYLMPYVEKERYQLPSTCRVHRDNDIYREQEEHKLRSDINEWRCGFCKKAFYEEKYLDKHFDSRHYNLLNASHGKCLSDLCGALHCDLVVDTARLKSKCNPAAAAKNRHLCESLANSCFPVNKGSSANRLHDFFLRQFCDAHTCSGGSKPLSQKPKKRSIVYIIFSIIVLVVLLLYYSFVYLFRRGLKRRSQDLKRIRHNGLKKKPF", "length": 272, "header": "tr|Q9FM27-1|Q9FM27_ARATH Isoform 1 of Zinc finger (C2H2 type) family protein OS=Arabidopsis thaliana OX=3702 GN=MNF13.27 PE=1 SV=1 CANONICAL=Q9FM27-1" }, "locus": { "chromosome": "5", "start_pos": 16294967, "end_pos": 16297044, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G40710.1", "url": "https://www.ensemblgenomes.org/id/AT5G40710.1" }, { "database": "Ensembl Peptide", "id": "AT5G40710.1", "url": "https://www.ensemblgenomes.org/id/AT5G40710.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BER0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BER0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BER0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BER0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G40710", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G40710", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FM27", "url": "https://www.uniprot.org/uniprotkb/Q9FM27" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FM27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FM27" }, { "id": "PS00028", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00028" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 109, "end_pos": 130, "start_aa": "Cys", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FFI4-1", "uniprot_ac": "Q9FFI4", "uniprot_id": "Q9FFI4_ARATH", "mass": { "chemical_mass": 101003.0, "monoisotopic_mass": 101003.0 }, "refseq": { "ac": "NP_197229", "name": "Protein prenylyltransferase superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197229" }, "gene_names": [ { "name": "MKP11.12", "type": "recommended", "evidence": [ { "id": "Q9FFI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFI4" } ] }, { "name": "MKP11.12", "type": "synonym", "evidence": [ { "id": "NP_197229", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197229" } ] }, { "name": "MKP11_12", "type": "synonym", "evidence": [ { "id": "NP_197229", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197229" }, { "id": "Q9FFI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFI4" } ] } ], "protein_names": [ { "name": "Protein prenylyltransferase superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_197229", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197229" }, { "id": "Q9FFI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFI4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFI4", "url": "https://www.uniprot.org/uniprotkb/Q9FFI4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MKP11.12", "url": "https://www.uniprot.org/uniprotkb/Q9FFI4", "locus": {} } ], "crossref": [ { "id": "AT5G17270", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G17270", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "831592", "url": "https://www.ncbi.nlm.nih.gov/gene/831592", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G17270", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G17270", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NNRYARA", "url": "https://omabrowser.org/oma/group/NNRYARA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR16193", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16193", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16193:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16193:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13432", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13432", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_197229", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197229", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G17270", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G17270", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BER5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BER5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BER5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BER5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FFI4", "url": "https://www.uniprot.org/uniprotkb/Q9FFI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FFI4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FFI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVDGEVEILRGYELRLLRCTVSFPQTGSPLESQPLDGTQSGTHPHDSLITSLLSSIEAGDYLGALSSDATKLILGDSELNLVDTVDSAEQVYSELLDKVESFVVNDSSDEIDKARRAVLVMCLAIATALWFTRCNLTGSTEGSTKCSLPLRVSESKELVEWENWAKIQLMSVGSDLLGKFSNLQHLVFARLLLFKLKDLLFEITSTETFEVRSISWWLVRVLLIHQRVLQERSSSLFEMLQVYMAEAIDHFGELEKVKSYWGANLLEDEASSITSTIHLEACVLQYIYGRIDPSRLQLESAKAAASLEFSVTGALGFRTIHQVDPKAQMVLVANTSSSNGDVRLASEKADVGPYEAWGGEAPEVYMTPKLVNNESEAGKDSVPLKPVEQALILAQCLLIERGSRHDEMQRWDMAPYIEAIDSQKSTYFVLRCFCDLLRVRWESTRGRTKGRALEMMDKLVGAINKSDPGVSNRIPLCYAVHLPTIPALRKEYGELLVSCGLVGEAITIFESLELWDNLIYCYCLLGKKSAAVDLINARLLERPNDPRLWCSLGDVTINDSCYEKALEVSNDKSVRAKRALARSAYNRGDFEKSKMLWEAAMALNSLYPDGWFALGAAALKARDVQKALDAFTFAVQLDPDNGEAWNNIACLHMIKKKSKESFIAFKEALKFKRDSWQMWENFSHVAMDVGNIDQAFEAIQQILKMSKNKRVDVVLLDRIMTELEKRNSACKSSSSSTETEASSDESTETKPCTATPAETQRQLELLGKVIQQIVKTESTAEIWGLYARWSRIKGDLTVCSEALLKQVRSYQGSEVWKDKERFKKFARASLELCRVYMEISASIGSKRELFTAEMHLKNTIKQATVSFLDSEELKELESCLEEVRNVMQKSEEEYRDTKT", "length": 899, "header": "tr|Q9FFI4-1|Q9FFI4_ARATH Isoform 1 of Protein prenylyltransferase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MKP11.12 PE=1 SV=1 CANONICAL=Q9FFI4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BER5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BER5/entry", "sequence": { "sequence": "MLQVYMAEAIDHFGELEKVKSYWGANLLEDEASSITSTIHLEACVLQYIYGRIDPSRLQLESAKAAASLEFSVTGALGFRTIHQVDPKAQMVLVANTSSSNGDVRLASEKADVGPYEAWGGEAPEVYMTPKLVNNESEAGKDSVPLKPVEQALILAQCLLIERGSRHDEMQRWDMAPYIEAIDSQKSTYFVLRCFCDLLRVRWESTRGRTKGRALEMMDKLVGAINKSDPGVSNRIPLCYAVHLPTIPALRKEYGELLVSCGLVGEAITIFESLELWDNLIYCYCLLGKKSAAVDLINARLLERPNDPRLWCSLGDVTINDSCYEKALEVSNDKSVRAKRALARSAYNRGDFEKSKMLWEAAMALNSLYPDGWFALGAAALKARDVQKALDAFTFAVQLDPDNGEAWNNIACLHMIKKKSKESFIAFKEALKFKRDSWQMWENFSHVAMDVGNIDQAFEAIQQILKMSKNKRVDVVLLDRIMTELEKRNSACKSSSSSTETEASSDESTETKPCTATPAETQRQLELLGKVIQQIVKTESTAEIWGLYARWSRIKGDLTVCSEALLKQVRSYQGSEVWKDKERFKKFARASLELCRVYMEISASIGSKRELFTAEMHLKNTIKQATVSFLDSEELKELESCLEEVRNVMQKSEEEYRDTKT", "length": 661, "header": "tr|A0A1P8BER5-1|Q9FFI4_ARATH Computationally mapped isoform of Protein prenylyltransferase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MKP11.12 PE=1 SV=1 CANONICAL=Q9FFI4-1" }, "locus": { "chromosome": "5", "start_pos": 5679922, "end_pos": 5685794, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G17270.2", "url": "https://www.ensemblgenomes.org/id/AT5G17270.2" }, { "database": "Ensembl Peptide", "id": "AT5G17270.2", "url": "https://www.ensemblgenomes.org/id/AT5G17270.2" } ] } }, { "isoform_ac": "Q9FFI4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FFI4/entry", "sequence": { "sequence": "MVDGEVEILRGYELRLLRCTVSFPQTGSPLESQPLDGTQSGTHPHDSLITSLLSSIEAGDYLGALSSDATKLILGDSELNLVDTVDSAEQVYSELLDKVESFVVNDSSDEIDKARRAVLVMCLAIATALWFTRCNLTGSTEGSTKCSLPLRVSESKELVEWENWAKIQLMSVGSDLLGKFSNLQHLVFARLLLFKLKDLLFEITSTETFEVRSISWWLVRVLLIHQRVLQERSSSLFEMLQVYMAEAIDHFGELEKVKSYWGANLLEDEASSITSTIHLEACVLQYIYGRIDPSRLQLESAKAAASLEFSVTGALGFRTIHQVDPKAQMVLVANTSSSNGDVRLASEKADVGPYEAWGGEAPEVYMTPKLVNNESEAGKDSVPLKPVEQALILAQCLLIERGSRHDEMQRWDMAPYIEAIDSQKSTYFVLRCFCDLLRVRWESTRGRTKGRALEMMDKLVGAINKSDPGVSNRIPLCYAVHLPTIPALRKEYGELLVSCGLVGEAITIFESLELWDNLIYCYCLLGKKSAAVDLINARLLERPNDPRLWCSLGDVTINDSCYEKALEVSNDKSVRAKRALARSAYNRGDFEKSKMLWEAAMALNSLYPDGWFALGAAALKARDVQKALDAFTFAVQLDPDNGEAWNNIACLHMIKKKSKESFIAFKEALKFKRDSWQMWENFSHVAMDVGNIDQAFEAIQQILKMSKNKRVDVVLLDRIMTELEKRNSACKSSSSSTETEASSDESTETKPCTATPAETQRQLELLGKVIQQIVKTESTAEIWGLYARWSRIKGDLTVCSEALLKQVRSYQGSEVWKDKERFKKFARASLELCRVYMEISASIGSKRELFTAEMHLKNTIKQATVSFLDSEELKELESCLEEVRNVMQKSEEEYRDTKT", "length": 899, "header": "tr|Q9FFI4-1|Q9FFI4_ARATH Isoform 1 of Protein prenylyltransferase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MKP11.12 PE=1 SV=1 CANONICAL=Q9FFI4-1" }, "locus": { "chromosome": "5", "start_pos": 5679922, "end_pos": 5685794, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G17270.1", "url": "https://www.ensemblgenomes.org/id/AT5G17270.1" }, { "database": "Ensembl Peptide", "id": "AT5G17270.1", "url": "https://www.ensemblgenomes.org/id/AT5G17270.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 755, "start_aa": "Thr", "end_pos": 755, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr755", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BER5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BER5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BER5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BER5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G17270", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G17270", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XVF5-1", "protein_name": "Tetratricopeptide repeat protein 27", "gene_name": "TTC27", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLALERSLLRGFLSAAESQEWKQGEISATESGSVLQLIFDGKYEAIFSNSTIRNVFSASSVAEEDIESYLEKQILMYLDCSTEVDNMERQRLMFLLGVGSLQLFVQSNWTGPPVHLQLQDFLPSALLQKCLEPKMLHATILKMLVLDAESVYTLTSHPILLLIARVVLVNSRHKLSSLQTLPWWTLRCVNIHQQLLEERSPELFTLAQTCIRQMTEAEALFAGDEGWHLAVQFNLECAYTFLYYYEYKKAKQCFCTAKDIAKLQINLTGALGKRTRFQEKYVAQLILDVQRSEEFIPPHSELTPAPTPLENLTMNCDLNDDTVLNEIKLADADQYQVPDLCAEELAVILGICIDFQKNNPIHKLTEEELLAFTSCLLSQPKFWAIQTSALLLRTKLEKGSTRRMERAMKQTQALADQFEDVNTSVSERMKIFYCCQVPPHWAIQRQLASLLFELGCTSSALQIYEELEMWEDAVICYERAGQHGKAEEILRRELEKKETPVLYCLLGDVLKDHQCYDKAWELSRHRSARAQRSKGLLHLRNREFRECVECFERSVQINPMQLGVWFSLGCAYIALEGYEGAAKAFQRCVTLEPDNAEAWNNLSTAYIRLKQKIKAFRTLQEALKCNYEHWQIWENYLLTSTDVGEFSEAIKAYHRLMDLREKYKDTQVLAILVRAVVDGMADRTGEAASGLKGKLRELLGRVTSRVTNDGEIWRLYARLYGNGHSDSSEDIEKSLQCLTKAHKCEIQSNDWEKDVSSFKEVAKGAIEVAHVAIKCSKKKSNNQEALQILSSARLNLRGLSSKAKQRFVDVGSHEICNEVTDEVTTMDNLIAELQELSNQLRDQG", "length": 844 }, "evidence": [ { "id": "Q9FFI4", "url": "https://omabrowser.org/oma/group/Q9FFI4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "K7DY99-1", "protein_name": "Tetratricopeptide repeat protein 27", "gene_name": "ttc27", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLQLEAAVLGGLSLDWKQSSFSTADAGSLLQLVYDGDFEAVLFSSAVQGLLGVCPEEGDSIEAYLERQVLSYLSDATEEQRSHREVALLAVAVGCLNLFAQSNWTGPPVELHVSDVLPEALLQNFSQPAALSTALLSSLQLDGESVYSLVSNPLLLLLTRVIFVNCAAKLESLQLLPWWTLRYVALHQQILEERSPQLLNLMLSCIEKVCKCDELFSSNAHRNLAIQFHLECSYICLTYYEYHKAKEHLQTARDLSGLDVNMTGALGKRTRFQENFLAQLILDVKRKDNSPFYNSESPSSTPTPKELLPKDHQLSDDTVLNQINLAEPSEHELPDLSAEEQAFILATCTDFQKNNPVHKLNDEELLAFTTCLLSQPKFWAVEVTSLCLRTKLERGSSRRVERAMMQTQTLVDFFSEKDCPVTERLKMFYSCRAPPLWDLQRQLASLLTDLGLTSSALLIYERLELWEDAVVCLERMGQHGKAEEILRRELEKKETPSLYCLLGDVLKDPQYYDRAWELSKHRSARAQRSKALHHLRHREFQQCVECFERSLQINSMQLGVWFSLGCAYFALESYEGAARAFQRCVGLEPDNSEAWNNLSTAYIKLRVKEKAFRTLQEALKCNYERWQIWENFIAVCVDLGEFSEAIRAYHRLMELKDKYKDVEVLEILVQAVVDNLTDHRGEQASILRPKLQELLGRVSSRCSTDAQIWKQYARLYGDGHSNNAEDNEKALQFLSKAHRCETQAAGWEKDTGSFKSVVKGARDMANVSISCSRSKRSPQEALQLLSSARLSLKSLTTKARQLYTDVATGELHDDLRDDVIELEQLITEIQDLSAQLRSQ", "length": 839 }, "evidence": [ { "id": "Q9FFI4", "url": "https://omabrowser.org/oma/group/Q9FFI4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q00918-1", "protein_name": "Latent-transforming growth factor beta-binding protein 1", "gene_name": "Ltbp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGAWLRWGLLLWAGLLAWSAHGRVRRITYVVRPGPGLPAGTLPLAGPPRTFNVALDARYSRSSTATSSRSLAGPPAERTRRTSQPGGAALPGLRSPLPPEPARPGAPSRQLHSKAGAQTAVTRFAKHGRQVVRSKVQQDTQSSGGSRLQVQQKQQLQGINVCGGQCCHGWSKAPGSQRCTKPSCVPPCQNGGMCLRPQFCVCKPGTKGKACEITAAQDTMSPVFGGQNPGSSWVPPEPAAKRTSTKKADTLPRVSPVAQMTLTLKPKPSMGLSQQIHSQVAPLSSQNVMIRHGQTQEYVLKPKYFPAPKVVSGEQSTEGSFSLRYGQEQGTAPFQVSNHTGRIKVVFTPSICKVTCTKGNCHNSCQKGNTTTLISENGHAADTLTATNFRVVICHLPCMNGGQCSSRDKCQCPPNFTGKLCQIPVLGASMPKLYQHAQQPGKALGSHVIHSTHTLPLTMTNQQGVKVKFPPNIVNIHVKHPPEASVQIHQVSRIDGPVGQRVKEVQPGQSQVSYQGLPVQKTQTVHSTYSHQQVIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTVGTSWGFNKCQKCPKKQSYHGYTQMMECLQGYKRVNNTFCQDINECQLQGVCPNGECLNTMGSYRCSCKMGFGPDPTFSSCVPDPPMISEEKGPCYRLVSPGRQCMHPLSVHLTKQICCCSVGKAWGPQCEKCPLPGTAAFKEICPGGMGYTVSGIHRRRPIHQHIGKEAVFVKPKNTQPVAKSTHPPPLPAKEEPVEALTSSREHGPGVAEPEVVTAPPEKEIPSLDQEKTRLEPGQPQLSPGVSTIHLHPQFPVVVEKTSPPVPVEVAPEGSTSSASQVIAPTQVTEINECTVNPDICGAGHCINLPVRYTCICYEGYKFSEQQRKCIDIDECAQAQHLCSQGRCENTEGSFLCICPAGFIASEEGSNCIDVDECLRPDVCRDGRCINTAGAFRCEYCDSGYRMSRRGHCEDIDECLTPSTCPEEQCVNSPGSYQCVPCTEGFRGWNGQCLDVDECLQPKVCTNGSCTNLEGSYMCSCHKGYSPTPDHRHCQDIDECQQGNLCMNGQCKNTDGSFRCTCGQGYQLSAAKDQCEDIDECEHRHLCSHGQCRNTEGSFQCLCNQGYRASVLGDHCEDINECLEDSSVCQGGDCINTAGSYDCTCPDGLQLNDNKGCQDINECAQPGLCAPHGECLNTQGSFHCVCEQGFSISADGRTCEDIDECVNNTVCDSHGFCDNTAGSFRCLCYQGFQAPQDGQGCVDVNECELLSGVCGEAFCENVEGSFLCVCADENQEYSPMTGQCRSRATEDSGVDRQPKEEKKECYYNLNDASLCDNVLAPNVTKQECCCTSGAGWGDNCEIFPCPVQGTAEFSEMCPRGKGFVPAGESSYETGGENYKDADECLLFGEEICKNGYCLNTQPGYECYCKEGTYYDPVKLQCFDMDECQDPNSCIDGQCVNTEGSYNCFCTHPMVLDASEKRCVQPTESNEQIEETDVYQDLCWEHLSEEYVCSRPLVGKQTTYTECCCLYGEAWGMQCALCPMKDSDDYAQLCNIPVTGRRRPYGRDALVDFSEQYGPETDPYFIQDRFLNSFEELQAEECGILNGCENGRCVRVQEGYTCDCFDGYHLDMAKMTCVDVNECSELNNRMSLCKNAKCINTEGSYKCVCLPGYVPSDKPNYCTPLNTALNLDKDSDLE", "length": 1712 }, "evidence": [ { "id": "Q9FFI4", "url": "https://omabrowser.org/oma/group/Q9FFI4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q17QZ7-1", "protein_name": "Tetratricopeptide repeat protein 27", "gene_name": "TTC27", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSGVMWTPELAVLRGFPTQAERQQWKQEGVASLESGSFLQLLLEGNYKAILLNSLTQSILNSATITEEKIDSYLEKQIVTFLDDSAELDKIRRQQKILLLGVSSLQLFVQSNWTGPLVDLHPQDFLPSVLFQQFSEIKALDAFLLSLLVLDGESIYSLTTKPILLLLARIILVNIRHKLTAIQSLPWWTLRCVNIHQQLLEERSPQLFALAEDCIDQVMKLEDLFVDDSGQCLAVQFHLECAYIFLYYYEYKKAKDQFSIAKDICRLQIGLTGALGKRTRFQENYVAQLILDVRREGTVFSNCEFTPAPTPQEYLTKNLELNDDTVLNEIKLADCEQFQMPDLCAEELAVILGICTDFQKNNPVHKLTEEELLAFTSCLLSQPKFWAIQTSALILRTKLERGSTRRVERAMRQTQALADQFEDKTASVLERLKIFYCCQVPPHWAVQRQLAGLLFELGCTNSALQIFEKLEMWEDVVICYERAGQHGKAEEILRQELEKKETPSLYCLLGDVLRDHSYYDQAWELSRHRSARAQRSKGLLHLRSREFKECVECFERSLKINPMQLGVWFSLGCAYLALEDYGGSARAFQRCVTLEPDNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDLRDKYKDTQVLKILVRAVMDGMADRSGDVATGLRGKLQELFGRVTSRVTNDGEIWRLYAQVYGNGQSDKPDENEKAFQYLSKAYKCDTQSSCWEKNITSFKEVVQRALGLAHVAIKCSKNKSSPQEAIQVLSSVRLNLRGLLSKAKQLFTDAASGEIARELADEIAAMDTLVTELQDLSNQFRNQY", "length": 847 }, "evidence": [ { "id": "Q9FFI4", "url": "https://omabrowser.org/oma/group/Q9FFI4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6P3X3-1", "protein_name": "Tetratricopeptide repeat protein 27", "gene_name": "TTC27", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWTPELAILRGFPTEAERQQWKQEGVVGSESGSFLQLLLEGNYEAIFLNSMTQNIFNSTTTAEEKIDSYLEKQVVTFLDYSTDLDTTERQQLIFLLGVSSLQLFVQSNWTGPPVDLHPQDFLSSVLFQQFSEVKGLDAFVLSLLTLDGESIYSLTSKPILLLLARIILVNVRHKLTAIQSLPWWTLRCVNIHQHLLEERSPLLFTLAENCIDQVMKLQNLFVDDSGRYLAIQFHLECAYVFLYYYEYRKAKDQLDIAKDISQLQIDLTGALGKRTRFQENYVAQLILDVRREGDVLSNCEFTPAPTPQEHLTKNLELNDDTILNDIKLADCEQFQMPDLCAEEIAIILGICTNFQKNNPVHTLTEVELLAFTSCLLSQPKFWAIQTSALILRTKLEKGSTRRVERAMRQTQALADQFEDKTTSVLERLKIFYCCQVPPHWAIQRQLASLLFELGCTSSALQIFEKLEMWEDVVICYERAGQHGKAEEILRQELEKKETPSLYCLLGDVLGDHSCYDKAWELSRYRSARAQRSKALLHLRNKEFQECVECFERSVKINPMQLGVWFSLGCAYLALEDYQGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDLRDKYKDVQVLKILVRAVIDGMTDRSGDVATGLKGKLQELFGRVTSRVTNDGEIWRLYAHVYGNGQSEKPDENEKAFQCLSKAYKCDTQSNCWEKDITSFKEVVQRALGLAHVAIKCSKNKSSSQEAVQMLSSVRLNLRGLLSKAKQLFTDVATGEMSRELADDITAMDTLVTELQDLSNQFRNQY", "length": 843 }, "evidence": [ { "id": "Q9FFI4", "url": "https://omabrowser.org/oma/group/Q9FFI4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CD92-1", "protein_name": "Tetratricopeptide repeat protein 27", "gene_name": "Ttc27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPGMMWTPELALLRGFSTEAERLVWKQEGICGSDIGVFLELLLEGSYEALFFHSTTQTILNSTMMAEEKIDSYLEKQIVNFLDCSTDLEEIERQQLVFLLGVSSLQLFVQSNWTGPLVDLHPQDFLPSGLLEQFSEVKGLDAIIMGLLILDGESVYSLTSKPILLLIARIILVNIRHKLTALQSLPWWTLRYVNIHQQLLEERSPQLFALAKNCIDQVMKQENLFEGDSGRLLAIQFHLECAHVFLYYYEYKEAKDQFSTAKDISKLEIDLTGALGKRTRFQENYVAQLIVDVRRKEAVPFSCEFSPAPTPQECLAKNLELNDDTVLNEIKLADSERFQMPDLCAEELAVVLGVCTNFQKNNPVHKLTEEELLAFTSCLLSQPKFWAIQMSALILRTKLERGSTRRVERAMRQTQALADQFEDKATSVLERLKIFYCCQVPPHWAVQRQLAGLLFELGCTSSALQIFEKLEMWEDVVICHERAGRHGKAEEILRQELEKKETPGLYCLLGDVLQDHSCYDKAWELSRHRSARAQRSKALLHLRNKEFRECVECFERSVKINPMQLGVWFSLGCAYLALEDYGGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFGEAIKAYHRLLDLRDKYKDIQVLKILVQAVVNDMTDRSGAVASSLKGKLQELFGRITSRVTNDGEVWRLYAQVHGNGQSEKPDENDKAFQCLSKAYKCDTQSSCWEKDATAFKEVVQRAIGLAHVAMKCAESKSIPQEAVQTLSSVRLNLRGLLSKAKQNFTDVVSGEVSGELASEIAAVNALEAELQDLSNQLRNRY", "length": 847 }, "evidence": [ { "id": "Q9FFI4", "url": "https://omabrowser.org/oma/group/Q9FFI4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VVM8-1", "protein_name": "Tetratricopeptide repeat protein 27", "gene_name": "Dmel\\CG5290", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MVADIFSEYYICNFNDAVTVEDLPADETLRQLWTRQKLWTIDELREILQRWQEHVKPDPNDNPTSQLKDFLLLIFAFVQNSFTGPFDKLEEYQQIHSELELEKLDALEKLKASGEELNPNVKSVELLLIAREILEGLLENHPESKVLIWWRLRLICLHQHVLDDLAASLYEQFKSAAGHLQAHFNQFESRELQSLLLLELANGYLQFHRSEIASQILDELCKHLQVELKVEGLLGVRTKFQQKALPQLCLKVEHLNEQQPLPPAVQTNETTKLPKLLLLEDDTRLERIRFVELKDNEVMTLPSVLQALVLAKVKQLKRSTPKDRLADEQLEPYTQTLLYQEHGPFQVRQSALLLNCLQESNQRRTVERSWKQCEECVKLLDTSEEELSLRSRLSYGFAAHLSPKWQVQLQLVDLLRSLGMTKTALDICLRIHAWQQVIECYTSLELRHKAAEIIRQELEKKPTALLYCLLGDAIDDPSFYEQAWLYSKKTSGKAQAYWGNHFYRSADYAQAMDHFEISLEINNLQEAILLRCGYCAIQLERWEPAVKYYLAYTHLEPNGFESWNNLAKALIKLGDKQRAHRVLGEALKCNYSNWKVWENYMLVSVDTSHWDDAMRAYQRMAELKQHYLDQEVLTRIVYGVSKEDPAGSSALIKRLIKLLGQQSIQHGNEPLVWELAALVAQTPLKKAEKLVKSYRAYTPKHLGWETKSEHALKALDLCLEVCDLSVAAITEHIQEESEVMITSQLNSARLAGTSCLNALKRAINVDVSAEQTAKVEQLEKRIEDLTKIVQERMNASRS", "length": 798 }, "evidence": [ { "id": "Q9FFI4", "url": "https://omabrowser.org/oma/group/Q9FFI4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FFI4", "url": "https://www.uniprot.org/uniprotkb/Q9FFI4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" }, { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 464, "end_pos": 466, "annotation": "n_glycosylation_sequon" }, { "start_pos": 558, "end_pos": 560, "annotation": "n_glycosylation_sequon" }, { "start_pos": 681, "end_pos": 683, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 755 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 105, "end_pos": 107 }, { "start_pos": 135, "end_pos": 137 }, { "start_pos": 334, "end_pos": 336 }, { "start_pos": 373, "end_pos": 375 }, { "start_pos": 464, "end_pos": 466 }, { "start_pos": 558, "end_pos": 560 }, { "start_pos": 681, "end_pos": 683 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"MGRDWSWLGGGKKKSSSKSKEEDIKPTQPPPPSLAGNTATAAGCMSAVFNIFDFQHLQFPINHHHLHLPKGVDAPRNSLESTEEETSFSPTRKDGNLNISMGIKIKTKPQARSSSASLTPTETYSPSIKTPTLVARLMGLDLVPDNYRSSPTPSSSSSSTLIDLKTPTRSSHAKKHRHYSLQRNSVDGGTRSLPETPRISLGRRSVDVNCYEHQRSSLHLRDNNINVFPERESGINNVRLTRVKEIHEDKENRSPREYARQIVMQLKENVSRRRRMGTDITNKETQPREVHESKKASSKTTIITHDVSSSPRLGLTEVPKTKPTSLQTNNVASKILETTAMKVQDKTRLPTVHEEPQGTEKEKQRKSTKKCKKPENFKSRLVKPPQSMQEEPFVRSPAINNSNNNNNGHLLLIQGDKSSSKKTPLSINHLINFTSVPTIKKKDSQPHHKSSNLKLRETQTPRNRASSSELPSFPSQSQHHIAPIAGGELEYITRTLRRTGIDRDTPISYAKWFSPSHPLDPSIFYFLEHFAVTSTRPRNSPENLSLRCNRKLLFHLVDEILADILKPHINLKPWVCHYPIRSQRNLKGSELIDELSRRIERFPLAKCLVLEDIDALVAGDFPEIESAFEEDGEGIVTEIERGIFETLVTETTTDYLATWMVKTAPLKRNDDVSGTWGVHVTRYSTNVGSHHDSSSLRLRLPRG", "length": 703, "header": "tr|Q9FIS0-1|Q9FIS0_ARATH Isoform 1 of LOW protein: M-phase inducer phosphatase-like protein OS=Arabidopsis thaliana OX=3702 GN=TRM25 PE=1 SV=1 CANONICAL=Q9FIS0-1" }, "locus": { "chromosome": "5", "start_pos": 24972886, "end_pos": 24975632, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G62170.1", "url": "https://www.ensemblgenomes.org/id/AT5G62170.1" }, { "database": "Ensembl Peptide", "id": "AT5G62170.1", "url": "https://www.ensemblgenomes.org/id/AT5G62170.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 152, "start_aa": "Thr", "end_pos": 152, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr152", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [ { "start_pos": 233, "end_pos": 233, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8BFY7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8BFY7" }, { "database": "iPTMnet", "id": "Q9FIS0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIS0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser233" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BFY7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFY7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FIS0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIS0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BFY7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BFY7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G62170", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G62170", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FIS0", "url": "https://www.uniprot.org/uniprotkb/Q9FIS0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 252, 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLL8", "url": "https://www.uniprot.org/uniprotkb/Q9FLL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLL8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLL8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLPHTASNEQAHEALSAPSCSLSQSLPVNATSCDSDGINRGNEGSFRFSIGESDRKTAVESLEFRDDLWRFHDTRSVTSLPAHEPTYAMDKVNLSRTEVRRIVGFESNEVSSVSNEYTSITVNRTGGSNEVDIIGGSLVRKRVSSPLNKLFPEKFRGDSLDISHSNQPMTSAGLPKGFHIPVGQDHKKANISGRLRLFTTSNCSEWGNDTSHTGKLSSTVFTDGPLLDSNDLQPSQDVHCLYSPVHETFQVPNKPLPCHRNISVSPPLSLSPLGPRFSERMKALQGGLNGNIFEDDVCLKNTGEEAELRTGHRSFDDTNGIQRAFSMDRAIESVPTSPCKRFSRSLSGRPIQRSLVGSFEESLFSGRLSYGQANQKIDGFLAILSIAGGNISPKSQKLPFSVTSVGDDCFLLYYASIDLSGGSLPSKLWGQKLKTNQNKSDAQTINKRLRIPMKGRIQLVLSNPEKTPLHTFLCNYDLTDMPHGTKTFLRQKVTLASSVPTKAKKSANKGSEGSELVDELHSPNECGNKNCRETYRETGQRCSKSGVLRYALHLKFICPLRKKASKLGQKKSLDAGDDGERRFYLYNELRVVFPQRHTDSDEGKLNVEYHYPENPRYFDV", "length": 621, "header": "tr|Q9FLL8-1|Q9FLL8_ARATH Isoform 1 of Meiosis chromosome segregation family protein OS=Arabidopsis thaliana OX=3702 GN=MEE6.18 PE=4 SV=1 CANONICAL=Q9FLL8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BG44-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG44/entry", "sequence": { "sequence": "MGLPHTASNEQAHEALSAPSCSLSQSLPVNATSCDSDGINRGNEGSFRFSIGESDRKTAVESLEFRDDLWRFHDTRSVTSLPAHEPTYAMDKVNLSRTEVRRIVGFESNEVSSVSNEYTSITVNRTGGSNEVDIIGGSLVRKRVSSPLNKLFPEKFRGDSLDISHSNQPMTSAGLPKGFHIPVGQDHKKANISGRLRLFTTSNCSEWGNDTSHTGKLSSTVFTDGPLLDSNDLQPSQDVHCLYSPVHETFQVPNKPLPCHRNISVSPPLSLSPLGPRFSERMKALQGGLNGNIFEDDVCLKNTGEEAELRTGHRSFDDTNGIQRAFSMDRAIESVPTSPCKRFSRSLSGRPIQRSLVGSFEESLFSGRLSYGQANQKIDGFLAILSIAGGNISPKSQKLPFSVTSVGDDCFLLYYASIDLSGGSLPSKLWGQKLKTNQNKSDAQTINKRLRIPMKGRIQLELLCFAGSE", "length": 469, "header": "tr|A0A1P8BG44-1|Q9FLL8_ARATH Computationally mapped isoform of Meiosis chromosome segregation family protein OS=Arabidopsis thaliana OX=3702 GN=MEE6.18 PE=4 SV=1 CANONICAL=Q9FLL8-1" }, "locus": { "chromosome": "5", "start_pos": 16452598, "end_pos": 16455105, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G41110.3", "url": "https://www.ensemblgenomes.org/id/AT5G41110.3" }, { "database": "Ensembl Peptide", "id": "AT5G41110.3", "url": "https://www.ensemblgenomes.org/id/AT5G41110.3" } ] } }, { "isoform_ac": "Q9FLL8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLL8/entry", "sequence": { "sequence": "MGLPHTASNEQAHEALSAPSCSLSQSLPVNATSCDSDGINRGNEGSFRFSIGESDRKTAVESLEFRDDLWRFHDTRSVTSLPAHEPTYAMDKVNLSRTEVRRIVGFESNEVSSVSNEYTSITVNRTGGSNEVDIIGGSLVRKRVSSPLNKLFPEKFRGDSLDISHSNQPMTSAGLPKGFHIPVGQDHKKANISGRLRLFTTSNCSEWGNDTSHTGKLSSTVFTDGPLLDSNDLQPSQDVHCLYSPVHETFQVPNKPLPCHRNISVSPPLSLSPLGPRFSERMKALQGGLNGNIFEDDVCLKNTGEEAELRTGHRSFDDTNGIQRAFSMDRAIESVPTSPCKRFSRSLSGRPIQRSLVGSFEESLFSGRLSYGQANQKIDGFLAILSIAGGNISPKSQKLPFSVTSVGDDCFLLYYASIDLSGGSLPSKLWGQKLKTNQNKSDAQTINKRLRIPMKGRIQLVLSNPEKTPLHTFLCNYDLTDMPHGTKTFLRQKVTLASSVPTKAKKSANKGSEGSELVDELHSPNECGNKNCRETYRETGQRCSKSGVLRYALHLKFICPLRKKASKLGQKKSLDAGDDGERRFYLYNELRVVFPQRHTDSDEGKLNVEYHYPENPRYFDV", "length": 621, "header": "tr|Q9FLL8-1|Q9FLL8_ARATH Isoform 1 of Meiosis chromosome segregation family protein OS=Arabidopsis thaliana OX=3702 GN=MEE6.18 PE=4 SV=1 CANONICAL=Q9FLL8-1" }, "locus": { "chromosome": "5", "start_pos": 16452598, "end_pos": 16455136, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G41110.2", "url": "https://www.ensemblgenomes.org/id/AT5G41110.2" }, { "database": "Ensembl Peptide", "id": "AT5G41110.2", "url": "https://www.ensemblgenomes.org/id/AT5G41110.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BG44", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG44" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BG44", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG44" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G41110", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41110", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9FLL8", "url": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017:SF364", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017:SF364", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07725", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07725", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "16301", "url": "https://www.rhea-db.org/rhea/16301", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT5G46450", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G46450", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BG45", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BG45-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG45-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGA7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGA7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHG0", "url": "https://www.uniprot.org/uniprotkb/Q9FHG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHG0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSSSSSRNWSYDVFPSFSGEDVRKTFLSHFLRELERKSIITFKDNEMERSQSIAPELVEAIKDSRIAVIVFSKNYASSSWCLNELLEIMRCNKYLGQQVIPVFYYLDPSHLRKQSGEFGEAFKKTCQNQTEEVKNQWKQALTDVSNILGYHSKNCNSEATMIEEISSHILGKLSLTPSNDFEEFVGIKDHIEKVRLLLHLESDEVRMVGIWGTSGIGKTTIARALFSNLSSQFQSSVYIDRAFISKSMEGYGRANPDDYNMKLRLRENFLFEILGKKNMKIGAMEERLKHQKVLIIIDDLDDQDVLDALVGRTQWFGSGSRIIVVTKNKHFLRAHGIDHVYEACLPSEELALEMFCRYAFRKNSPPDGFMELSSEVALRAGNLPLGLKVLGSYLRGRDIEDWMDMMPRLQNDLDGKIEKTLRVSYDGLNNKKDEAIFRHIACLFNGEKVNDIKLLLAESDLDVNIGLKNLVDKSLIFVREDTIEMHRLLQDMGKEIVRAQSNEPGEREFLVDSKHIYDVLEDNTGTKKVLGIALDINETDGLYIHESAFKGMRNLLFLNFYTKQKKDVTWHLSEGFDHLPPKLRLLSWEKYPLRCMPSNFRPENLVKLQMCESKLEKLWDGVHSLTGLRNMDLRGSENLKEIPDLSLATNLKKLDVSNCTSLVELSSTIQNLNQLEELQMERCENLENLPIGINLESLYCLNLNGCSKLRSFPDISTTISELYLSETAIEEFPTELHLENLYYLGLYDMKSEKLWKRVQPLTPLMTMLSPSLTKLFLSDIPSLVELPSSFQNLHNLEHLNIARCTNLETLPTGVNLELLEQLDFSGCSRLRSFPDISTNIFSLVLDGTGIEEVPWWIEDFYRLSFLSMIGCNNLQGVSLNISKLEKLETVDFSDCEALSHANWDTIPSAVAMATENIHSKLPVCIKFSNCFNLDHKAVLLQQSIFKQLILSGGEMFSYFTHRTTGTSLTNIPLLHISPCQPFFRFRACALVDTESMDIGSVFFQVQVSCRFTDRLGNYLDSPYQHEVFAVLEKGSHMVISDCCFPFNEDNAPLAELIYDHVDIQFHFTQENDELKLIGCGLRLSEADNDLGNEIDGSEEWEDCNDSGLGSESDNLEAEEDT", "length": 1123, "header": "tr|Q9FHG0-1|Q9FHG0_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FHG0-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BG45-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG45/entry", "sequence": { "sequence": 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"length": 1100, "header": "tr|A0A1P8BG45-1|Q9FHG0_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FHG0-1" }, "locus": { "chromosome": "5", "start_pos": 18835605, "end_pos": 18839546, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46450.2", "url": "https://www.ensemblgenomes.org/id/AT5G46450.2" }, { "database": "Ensembl Peptide", "id": "AT5G46450.2", "url": "https://www.ensemblgenomes.org/id/AT5G46450.2" } ] } }, { "isoform_ac": "A0A1P8BGA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGA7/entry", "sequence": { "sequence": "MASSSSSSRNWSYDVFPSFSGEDVRKTFLSHFLRELERKSIITFKDNEMERSQSIAPELVEAIKDSRIAVIVFSKNYASSSWCLNELLEIMRCNKYLGQQVIPVFYYLDPSHLRKQSGEFGEAFKKTCQNQTEEVKNQWKQALTDVSNILGYHSKNCNSEATMIEEISSHILGKLSLTPSNDFEEFVGIKDHIEKVRLLLHLESDEVRMVGIWGTSGIGKTTIARALFSNLSSQFQSSVYIDRAFISKSMEGYGRANPDDYNMKLRLRENFLFEILGKKNMKIGAMEERLKHQKVLIIIDDLDDQDVLDALVGRTQWFGSGSRIIVVTKNKHFLRAHGIDHVYEACLPSEELALEMFCRYAFRKNSPPDGFMELSSEVALRAGNLPLGLKVLGSYLRGRDIEDWMDMMPRLQNDLDGKIEKTLRVSYDGLNNKKDEAIFRHIACLFNGEKVNDIKLLLAESDLDVNIGLKNLVDKSLIFVREDTIEMHRLLQDMGKEIVRAQSNEPGEREFLVDSKHIYDVLEDNTGTKKVLGIALDINETDGLYIHESAFKGMRNLLFLNFYTKQKKDVTWHLSEGFDHLPPKLRLLSWEKYPLRCMPSNFRPENLVKLQMCESKLEKLWDGVHSLTGLRNMDLRGSENLKEIPDLSLATNLKKLDVSNCTSLVELSSTIQNLNQLEELQMERCENLENLPIGINLESLYCLNLNGCSKLRSFPDISTTISELYLSETAIEEFPTELHLENLYYLGLYDMKSEKLWKRVQPLTPLMTMLSPSLTKLFLSDIPSLVELPSSFQNLHNLEHLNIARCTNLETLPTGVNLELLEQLDFSGCSRLRSFPDISTNIFSLVLDGTGIEEVPWWIEDFYRLSFLSMIGCNNLQVAMATENIHSKLPVCIKFSNCFNLDHKAVLLQQSIFKQLILSGGEMFSYFTHRTTGTSLTNIPLLHISPCQPFFRFRACALVDTESMDIGSVFFQVQVSCRFTDRLGNYLDSPYQHEVFAVLEKGSHMVISDCCFPFNEDNAPLAELIYDHVDIQFHFTQENDELKLIGCGLRLSEADNDLGNEIDGSEEWEDCNDSGLGSESDNLEAEEDT", "length": 1089, "header": "tr|A0A1P8BGA7-1|Q9FHG0_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FHG0-1" }, "locus": { "chromosome": "5", "start_pos": 18835618, "end_pos": 18839730, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46450.3", "url": "https://www.ensemblgenomes.org/id/AT5G46450.3" }, { "database": "Ensembl Peptide", "id": "AT5G46450.3", "url": "https://www.ensemblgenomes.org/id/AT5G46450.3" } ] } }, { "isoform_ac": "Q9FHG0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHG0/entry", "sequence": { "sequence": "MASSSSSSRNWSYDVFPSFSGEDVRKTFLSHFLRELERKSIITFKDNEMERSQSIAPELVEAIKDSRIAVIVFSKNYASSSWCLNELLEIMRCNKYLGQQVIPVFYYLDPSHLRKQSGEFGEAFKKTCQNQTEEVKNQWKQALTDVSNILGYHSKNCNSEATMIEEISSHILGKLSLTPSNDFEEFVGIKDHIEKVRLLLHLESDEVRMVGIWGTSGIGKTTIARALFSNLSSQFQSSVYIDRAFISKSMEGYGRANPDDYNMKLRLRENFLFEILGKKNMKIGAMEERLKHQKVLIIIDDLDDQDVLDALVGRTQWFGSGSRIIVVTKNKHFLRAHGIDHVYEACLPSEELALEMFCRYAFRKNSPPDGFMELSSEVALRAGNLPLGLKVLGSYLRGRDIEDWMDMMPRLQNDLDGKIEKTLRVSYDGLNNKKDEAIFRHIACLFNGEKVNDIKLLLAESDLDVNIGLKNLVDKSLIFVREDTIEMHRLLQDMGKEIVRAQSNEPGEREFLVDSKHIYDVLEDNTGTKKVLGIALDINETDGLYIHESAFKGMRNLLFLNFYTKQKKDVTWHLSEGFDHLPPKLRLLSWEKYPLRCMPSNFRPENLVKLQMCESKLEKLWDGVHSLTGLRNMDLRGSENLKEIPDLSLATNLKKLDVSNCTSLVELSSTIQNLNQLEELQMERCENLENLPIGINLESLYCLNLNGCSKLRSFPDISTTISELYLSETAIEEFPTELHLENLYYLGLYDMKSEKLWKRVQPLTPLMTMLSPSLTKLFLSDIPSLVELPSSFQNLHNLEHLNIARCTNLETLPTGVNLELLEQLDFSGCSRLRSFPDISTNIFSLVLDGTGIEEVPWWIEDFYRLSFLSMIGCNNLQGVSLNISKLEKLETVDFSDCEALSHANWDTIPSAVAMATENIHSKLPVCIKFSNCFNLDHKAVLLQQSIFKQLILSGGEMFSYFTHRTTGTSLTNIPLLHISPCQPFFRFRACALVDTESMDIGSVFFQVQVSCRFTDRLGNYLDSPYQHEVFAVLEKGSHMVISDCCFPFNEDNAPLAELIYDHVDIQFHFTQENDELKLIGCGLRLSEADNDLGNEIDGSEEWEDCNDSGLGSESDNLEAEEDT", "length": 1123, "header": "tr|Q9FHG0-1|Q9FHG0_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FHG0-1" }, "locus": { "chromosome": "5", "start_pos": 18835605, "end_pos": 18840058, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46450.1", "url": "https://www.ensemblgenomes.org/id/AT5G46450.1" }, { "database": "Ensembl Peptide", "id": "AT5G46450.1", "url": "https://www.ensemblgenomes.org/id/AT5G46450.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 8, "end_pos": 8, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHG0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHG0" } ], "site_lbl": "Ser8" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BG45", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG45" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BG45", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG45" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G46450", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46450", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q9FHG0", "url": "https://www.uniprot.org/uniprotkb/Q9FHG0" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FHG0", "url": "https://www.uniprot.org/uniprotkb/Q9FHG0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { 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"activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9LUJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUJ8" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9LUJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUJ8" } ] } ] }, { "uniprot_ac": "Q9M0Q5", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9M0Q5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9M0Q5" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9M0Q5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9M0Q5" } ] } ] }, { "uniprot_ac": "Q9M285", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9M285", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9M285" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9M285", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9M285" } ] } ] }, { "uniprot_ac": "Q9M8X8", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9M8X8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9M8X8" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9M8X8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9M8X8" } ] } ] }, { "uniprot_ac": "Q9SCZ2", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9SCZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SCZ2" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9SCZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SCZ2" } ] } ] }, { "uniprot_ac": "Q9SW60", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9SW60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SW60" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9SW60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SW60" } ] } ] }, { "uniprot_ac": "Q9SYC9", "gene_name": "PVA14", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9SYC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYC9" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9SYC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYC9" } ] } ] }, { "uniprot_ac": "Q9SZ66", "gene_name": "DSC1", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9SZ66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SZ66" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9SZ66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SZ66" } ] } ] }, { "uniprot_ac": "Q9XGM3", "gene_name": "RPS4", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9XGM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9XGM3" } ] } ] }, { "uniprot_ac": "Q9ZVX6", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9ZVX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ZVX6" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9ZVX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ZVX6" } ] } ] } ], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FHG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHG0" }, { "id": "PS50104", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50104" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TIR", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 175, "start_aa": "Trp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "3.2.2.6", "ec_name": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "3.2.2.6", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/?query=ec:3.2.2.6" }, { "id": "3.2.2.6", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.2.2.6" } ] } ], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 8 ], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 }, { "start_pos": 1106, "end_pos": 1108 }, { "start_pos": 130, "end_pos": 132 }, { "start_pos": 230, "end_pos": 232 }, { "start_pos": 539, "end_pos": 541 }, { "start_pos": 660, "end_pos": 662 }, { "start_pos": 882, "end_pos": 884 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FJE3-1", "uniprot_ac": "Q9FJE3", "uniprot_id": "Q9FJE3_ARATH", "mass": { "chemical_mass": 74888.0, "monoisotopic_mass": 74888.0 }, "refseq": { "ac": "NP_200801", "name": "Cysteine/Histidine-rich C1 domain family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200801" }, "gene_names": [ { "name": "MMN10.17", "type": "recommended", "evidence": [ { "id": "Q9FJE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJE3" } ] }, { "name": "MMN10.17", "type": "synonym", "evidence": [ { "id": "NP_200801", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200801" } ] }, { "name": "MMN10_17", "type": "synonym", "evidence": [ { "id": "NP_200801", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200801" }, { "id": "Q9FJE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJE3" } ] } ], "protein_names": [ { "name": "Cysteine/Histidine-rich C1 domain family protein", "type": "synonym", "evidence": [ { "id": "NP_200801", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200801" }, { "id": "Q9FJE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJE3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FJE3", "url": "https://www.uniprot.org/uniprotkb/Q9FJE3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MMN10.17", "url": "https://www.uniprot.org/uniprotkb/Q9FJE3", "locus": {} } ], "crossref": [ { "id": "AT5G59930", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G59930", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "836115", "url": "https://www.ncbi.nlm.nih.gov/gene/836115", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G59930", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G59930", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RRIPFIC", "url": "https://omabrowser.org/oma/group/RRIPFIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF159", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF159", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_200801", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200801", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G59930", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G59930", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BG71", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BG71-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG71-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FJE3", "url": "https://www.uniprot.org/uniprotkb/Q9FJE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FJE3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FJE3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDTSAVQLPFRDYSLQPAPRYINARCHICSVTGAIYNGYFCNDPIVWMHKECVELPSEINHLFHPQHPLLLTYEEGWWSCFCALCGETKPAKYFYSCSTCKIKVDLTCGMNPPPPAIEHPICHDHPLVFLKKRQEKTPCEVCKNRILGSSYSCLGCELYFHVGCIHLSKEVNHPCHSDHPLMLVESESLTDNDKKTCFLCGQQPHGILYHCSICNFTLCIGCIKSPPPLVVENVKTHKHPLTFFPRGVYCTCNVCGVKGLILSYMCLQCGFAVHCSCVDLPQVININRHDHRISFTQHLGPGYLNCGVCRRSVCQFNGAYSCLVCPNYAVHSRCATRYDIWDGVELEGKAENIEDIAPFKVVGDDLIRHFSHSKHSLRLHKNNIIYDDSTRCEACGHPVEFGRIYNCEECCFILHEKCANLPMKKRLVFSTLPFLLLGPGNDVCKVLDCKLCGMFFTGFEYKSQERRQSDIDVHCGSLTEPFVHDGHLHPLYFDQKQKELPCNACQKTIRDYMLCCADCDFNLCLWCASLPKKIRHSNDEHILTLCCGEEANGKYWCDICEAELDPSKWFYTCFGCGGTLHVECVLGDFSRLMPGCTIDYRVYTVEVVFNNHNTRPMCSRCHSRCKVSVILKFREGNIVYFFCSRSCFLMHFSYYL", "length": 656, "header": "tr|Q9FJE3-1|Q9FJE3_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN=MMN10.17 PE=4 SV=1 CANONICAL=Q9FJE3-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BG71-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG71/entry", "sequence": { "sequence": "MDTSAVQLPFRDYSLQPAPRYINARCHICSVTGAIYNGYFCNDPIVWMHKECVELPSEINHLFHPQHPLLLTYEEGWWSCFCALCGETKPAKYFYSCSTCKIKVDLTCGMNPPPPAIEHPICHDHPLVFLKKRQEKTPCEVCKNRILGSSYSCLGCELYFHVGCIHLSKEVNHPCHSDHPLMLVESESLTDNDKKTCFLCGQQPHGILYHCSICNFTLCIGCIKSPPPLVVENVKTHKHPLTFFPRGVYCTCNVCGHLGPGYLNCGVCRRSVCQFNGAYSCLVCPNYAVHSRCATRYDIWDGVELEGKAENIEDIAPFKVVGDDLIRHFSHSKHSLRLHKNNIIYDDSTRCEACGHPVEFGRIYNCEECCFILHEKCANLPMKKRLVFSTLPFLLLGPGNDVCKVLDCKLCGMFFTGFEYKSQERRQSDIDVHCGSLTEPFVHDGHLHPLYFDQKQKELPCNACQKTIRDYMLCCADCDFNLCLWCASLPKKIRHSNDEHILTLCCGEEANGKYWCDICEAELDPSKWFYTCFGCGGTLHVECVLGDFSRLMPGCTIDYRVYTVEVVFNNHNTRPMCSRCHSRCKVSVILKFREGNIVYFFCSRSCFLMHFSYYL", "length": 615, "header": "tr|A0A1P8BG71-1|Q9FJE3_ARATH Computationally mapped isoform of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN=MMN10.17 PE=4 SV=1 CANONICAL=Q9FJE3-1" }, "locus": { "chromosome": "5", "start_pos": 24134225, "end_pos": 24136665, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G59930.2", "url": "https://www.ensemblgenomes.org/id/AT5G59930.2" }, { "database": "Ensembl Peptide", "id": "AT5G59930.2", "url": "https://www.ensemblgenomes.org/id/AT5G59930.2" } ] } }, { "isoform_ac": "Q9FJE3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FJE3/entry", "sequence": { "sequence": "MDTSAVQLPFRDYSLQPAPRYINARCHICSVTGAIYNGYFCNDPIVWMHKECVELPSEINHLFHPQHPLLLTYEEGWWSCFCALCGETKPAKYFYSCSTCKIKVDLTCGMNPPPPAIEHPICHDHPLVFLKKRQEKTPCEVCKNRILGSSYSCLGCELYFHVGCIHLSKEVNHPCHSDHPLMLVESESLTDNDKKTCFLCGQQPHGILYHCSICNFTLCIGCIKSPPPLVVENVKTHKHPLTFFPRGVYCTCNVCGVKGLILSYMCLQCGFAVHCSCVDLPQVININRHDHRISFTQHLGPGYLNCGVCRRSVCQFNGAYSCLVCPNYAVHSRCATRYDIWDGVELEGKAENIEDIAPFKVVGDDLIRHFSHSKHSLRLHKNNIIYDDSTRCEACGHPVEFGRIYNCEECCFILHEKCANLPMKKRLVFSTLPFLLLGPGNDVCKVLDCKLCGMFFTGFEYKSQERRQSDIDVHCGSLTEPFVHDGHLHPLYFDQKQKELPCNACQKTIRDYMLCCADCDFNLCLWCASLPKKIRHSNDEHILTLCCGEEANGKYWCDICEAELDPSKWFYTCFGCGGTLHVECVLGDFSRLMPGCTIDYRVYTVEVVFNNHNTRPMCSRCHSRCKVSVILKFREGNIVYFFCSRSCFLMHFSYYL", "length": 656, "header": "tr|Q9FJE3-1|Q9FJE3_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN=MMN10.17 PE=4 SV=1 CANONICAL=Q9FJE3-1" }, "locus": { "chromosome": "5", "start_pos": 24134231, "end_pos": 24136558, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G59930.1", "url": "https://www.ensemblgenomes.org/id/AT5G59930.1" }, { "database": "Ensembl Peptide", "id": "AT5G59930.1", "url": "https://www.ensemblgenomes.org/id/AT5G59930.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, 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"categories": [ "Protein" ] }, { "id": "Q9FIN8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIN8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METNLKIYLVSSTDSSEFTHLKWSFTRSTIIALDAEWKPQHSNTSSFPTVTLLQVACRLSHATDVSDVFLIDLSSIHLPSVWELLNDMFVSPDVLKLGFRFKQDLVYLSSTFTQHGCEGGFQEVKQYLDITSIYNYLQHKRFGRKAPKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEAHLVEGITVQDLRVINVGLQEILTESDYSSKIVTVKLCKATDVIRSMSENGQNIANGVVPRKTTLNTMPMDENLLKIVRKFGERILLKESDLLPKKLKKKTRRRVASSTMNTNKQLVCSADWQGPPPWDSSLGGDGCPKFLLDVMVEGLAKHLRCVGIDAAIPHSKKPDSRELLDQAFKENRVLLTRDTKLLRHQDLAKHQIYRVKSLLKNEQLLEVIETFQLKISGNQLMSRCTKCNGKFIQKPLSIEEAIEAAKGFQRIPNCLFNKNLEFWQCMNCHQLYWEGTQYHNAVQKFMEVCKLSE", "length": 505, "header": "tr|Q9FIN8-1|Q9FIN8_ARATH Isoform 1 of 3'-5' exonuclease domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FIN8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BGD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGD5/entry", "sequence": { 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"AT5G24340.2", "url": "https://www.ensemblgenomes.org/id/AT5G24340.2" } ] } }, { "isoform_ac": "Q9FIN8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIN8/entry", "sequence": { "sequence": "METNLKIYLVSSTDSSEFTHLKWSFTRSTIIALDAEWKPQHSNTSSFPTVTLLQVACRLSHATDVSDVFLIDLSSIHLPSVWELLNDMFVSPDVLKLGFRFKQDLVYLSSTFTQHGCEGGFQEVKQYLDITSIYNYLQHKRFGRKAPKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEAHLVEGITVQDLRVINVGLQEILTESDYSSKIVTVKLCKATDVIRSMSENGQNIANGVVPRKTTLNTMPMDENLLKIVRKFGERILLKESDLLPKKLKKKTRRRVASSTMNTNKQLVCSADWQGPPPWDSSLGGDGCPKFLLDVMVEGLAKHLRCVGIDAAIPHSKKPDSRELLDQAFKENRVLLTRDTKLLRHQDLAKHQIYRVKSLLKNEQLLEVIETFQLKISGNQLMSRCTKCNGKFIQKPLSIEEAIEAAKGFQRIPNCLFNKNLEFWQCMNCHQLYWEGTQYHNAVQKFMEVCKLSE", "length": 505, "header": "tr|Q9FIN8-1|Q9FIN8_ARATH Isoform 1 of 3'-5' exonuclease domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FIN8-1" }, "locus": { "chromosome": "5", "start_pos": 8297280, "end_pos": 8300502, "strand": "+", "evidence": [ { "database": "Ensembl 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"MLIYNADSVVFLFSLFLQFEINHLQDEHLESVDAYYNKKSYGLQAIQFKTNFRTSELMGYSYECTMFTLAVKGKKIIGFHGSDNVHIYSLGAYFTSITPTRLEVKGGMGGKKWEDGFDHDNVSKIQVLGGFEGILYIKVDYIKNGKLETGLIHGDSGGDGFLQKMEINQSKNEYLVYVEGYYDDASETIQGLHFQTNLNNPVMMGYKKGRKFLLASNGNKIIGFHGYADKSLNSLGAYFSRATPNKLECQGDCRGMSWDDGCNYDGVRKVFVDGIGNEIYTVRFEYDNGGKVEKTPYRRDVKNEKEFVLDYPNEFITSVEGTLAAPKSVNITWITSLTFKTSKKRSSPTFGSASSRKFVLEKNGSPLVGFHGYNSVGNTLNSLGAYYRPIPPTPDVEKLKAQGGVEELLGMMVFELDPLERITSVEGTYDDKIGGITMLRFKTNKKDSPYFGFGTLPSFVLHKDNHQIVGFHGKSSNMLHQLGVHVLPNGFKFVS", "length": 495, "header": "sp|Q9FFW7-1|JAL43_ARATH Isoform 1 of Jacalin-related lectin 43 OS=Arabidopsis thaliana OX=3702 GN=JAL43 PE=3 SV=1 CANONICAL=Q9FFW7-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BGF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGF4/entry", "sequence": { "sequence": "MIIKLGAKGIKLDERRLWDDGSDHDDVTKIYVKGGPQGIGSFYFNYVKSGNPKDGSIHGFFNYGFTQTFEINHLQDEHLESVDAYYNKKSYGLQAIQFKTNFRTSELMGYSYECTMFTLAVKGKKIIGFHGSDNVHIYSLGAYFTSITPTRLEVKGGMGGKKWEDGFDHDNVSKIQVLGGFEGILYIKVDYIKNGKLETGLIHGDSGGDGFLQKMEINQSKNEYLVYVEGYYDDASETIQGLHFQTNLNNPVMMGYKKGRKFLLASNGNKIIGFHGYADKSLNSLGAYFSRATPNKLECQGDCRGMSWDDGCNYDGVRKVFVDGIGNEIYTVRFEYDNGGKVEKTPYRRDVKNEKEFVLDYPNEFITSVEGTLAAPKSVNITWITSLTFKTSKKRSSPTFGSASSRKFVLEKNGSPLVGFHGYNSVGNTLNSLGAYYRPIPPTPDVEKLKAQGGVEELLGMMVVLSTV", "length": 468, "header": "tr|A0A1P8BGF4-1|JAL43_ARATH Computationally mapped isoform of Jacalin-related lectin 43 OS=Arabidopsis thaliana OX=3702 GN=JAL43 PE=3 SV=1 CANONICAL=Q9FFW7-1" }, "locus": { "chromosome": "5", "start_pos": 15426556, "end_pos": 15430559, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G38540.1", "url": "https://www.ensemblgenomes.org/id/AT5G38540.1" }, { "database": "Ensembl Peptide", "id": "AT5G38540.1", "url": "https://www.ensemblgenomes.org/id/AT5G38540.1" } ] } }, { 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O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGF4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGF4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Antagonistic jacalin-related lectins regulate the size of ER body-type beta-glucosidase complexes in Arabidopsis thaliana.", "journal": "Plant Cell Physiol.", "date": "2008", "authors": "Nagano Atsushi J, Fukao Yoichiro, Fujiwara Masayuki, Nishimura Mikio, Hara-Nishimura Ikuko", "evidence": [ { "database": "UniProtKB", "id": "Q9FFW7", "url": "https://www.uniprot.org/uniprotkb/Q9FFW7" } ], "reference": [ { "type": "PubMed", "id": "18467340", "url": "https://glygen.org/publication/PubMed/18467340" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGF4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGF4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones.", "journal": "DNA Res.", "date": "1997", "authors": "Sato S, Kotani H, Nakamura Y, Kaneko T, Asamizu E, Fukami M, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FFW7", "url": "https://www.uniprot.org/uniprotkb/Q9FFW7" } ], "reference": [ { "type": "PubMed", "id": "9330910", "url": "https://glygen.org/publication/PubMed/9330910" } ] } ], "pathway": [ { "id": "ath:AT5G38540", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G38540", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FFW7", "url": "https://www.uniprot.org/uniprotkb/Q9FFW7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "Q9FFW7", "url": "https://www.uniprot.org/uniprotkb/Q9FFW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 330, "end_pos": 332, "annotation": "n_glycosylation_sequon" }, { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FFW7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 495, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FFW7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FFW7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FFW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFW7" }, { "id": "PRU01088", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU01088" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Jacalin-type lectin 1", "eco_id": "ECO_0000255", "start_pos": 1, "end_pos": 96, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "Q9FFW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFW7" }, { "id": "PRU01088", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU01088" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Jacalin-type lectin 2", "eco_id": "ECO_0000255", "start_pos": 99, "end_pos": 241, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "Q9FFW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFW7" }, { "id": "PRU01088", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU01088" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Jacalin-type lectin 3", "eco_id": "ECO_0000255", "start_pos": 244, "end_pos": 389, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "Q9FFW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFW7" }, { "id": "PRU01088", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU01088" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Jacalin-type lectin 4", "eco_id": "ECO_0000255", "start_pos": 403, "end_pos": 488, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 393 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 }, { "start_pos": 168, "end_pos": 170 }, { "start_pos": 330, "end_pos": 332 }, { "start_pos": 363, "end_pos": 365 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FKP6-1", "uniprot_ac": "Q9FKP6", "uniprot_id": "Q9FKP6_ARATH", "mass": { "chemical_mass": 122660.0, "monoisotopic_mass": 122660.0 }, "refseq": { "ac": "NP_001332293", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001332293" }, "gene_names": [ { "name": "MNA5.17", "type": "recommended", "evidence": [ { "id": "Q9FKP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKP6" } ] }, { "name": "MNA5.17", "type": "synonym", "evidence": [ { "id": "NP_001332293", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001332293" } ] }, { "name": "MNA5_17", "type": "synonym", "evidence": [ { "id": "NP_001332293", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001332293" }, { "id": "Q9FKP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKP6" } ] } ], "protein_names": [ { "name": "Transmembrane protein", "type": "synonym", "evidence": [ { "id": "Q9FKP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKP6/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_001332293", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001332293" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKP6", "url": "https://www.uniprot.org/uniprotkb/Q9FKP6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MNA5.17", "url": "https://www.uniprot.org/uniprotkb/Q9FKP6", "locus": {} } ], "crossref": [ { "id": "AT5G65440", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G65440", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00030", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00030", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "836669", "url": "https://www.ncbi.nlm.nih.gov/gene/836669", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G65440", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G65440", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IAIHNCS", "url": "https://omabrowser.org/oma/group/IAIHNCS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31110", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31110", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31110:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31110:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001332293", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001332293", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G65440", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G65440", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BGK1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGK1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H553", "url": "https://www.uniprot.org/uniprotkb/B3H553", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H553-1", "url": "https://www.uniprot.org/uniprotkb/B3H553-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4KHY8", "url": "https://www.uniprot.org/uniprotkb/F4KHY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4KHY8-1", "url": "https://www.uniprot.org/uniprotkb/F4KHY8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FKP6", "url": "https://www.uniprot.org/uniprotkb/Q9FKP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FKP6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFREAGLRNIGEDVDSRWTIGNRKLDAKSVPNANSGHGFGFRSAPPLSSSIKPVRGNNNGGSSSDMDIASDSDEEIFERQHSPQDYRIHLGLPHVAAQNGLGRNGAKVFGAADDLSDSATSTEVSYEAEACGVRNNISSHNEFERRNVEAGTSGRTLNGTSTSTSSLPRFPTFHASEQGPWSAMIAYEACVRLCLHSWSTDSVSEASYFLNNECTIMRNAFSLQRFFLHSEEELLGKGPSELVTETSVPKSKKTIGKIKLQVRRIKMGLDPPPGCNIATLTVSKEKLEVVRHHIVELNSTLSSGWKAARKVHVTPQVPLNGSLSRQSLAYMQAAARYLKQVSKAVKKEIVTSHTGPQTYEAVQETYSCSLRLKSSPEDDQIKTQPGSGETFIFLPDSLGDDLIIEVRDSKAQLLGRVVAQLAAMADDPSEKLRWLPIYHEPEHELIGRIQLTFSYSSSLDEKTKCGLVAETSAYDLVLEVAMKAERFQRRNLLFKGPWHWMITRFASYYGVSDAYTRLRYLSYVMDVASPTKDCLDLIHDFLFPIIMTSNHRAVLSHQENRLLGEIDEQIQQILASAFENYKSLAELSFSGMKDVFESATGTPAPAIESAVKLYGLLNDVLTPEAQLKLCRYFQAASKKRSRRHLLDTNDLLNNRSEGVPVDPMVLAASYQKMKSLILSLKNEISTDIAIHDCNVLPSFIDLPNHSAAIYSVDVCNRLREFLLVWPPPGPSPAVVDLVITTADFQRDLSSWHINPIKGGVNAKELFYSYITTWIEEKRRVLYELCKLETSKACVEIPGLTSPFVDEMYERLNGTLDEYDIIIRRWPEYAISLEKVVADSEKAIVEAMEKQFTEILSPLKESKIFGLKIVKKFTKGTPNPYSVPKELGVLLNSMKRVLDILRPSIENRFKSWNSYIPDGENRVLGERLSEVTVLLRSKFRSYMQALVEKLAENTRIQSHMKLKTIIHDLRETTAEPDVRNRMTSLKDLLDKTIDHLHGVFLPDVFVAICRGIWDRMGQDVLRLLEDRKDNVTWHKGPRIAVSVLDEIFATQMQSLLGNGLKPEHLEPPRSMMELRSMLCKDSTDYREGGYNY", "length": 1091, "header": "tr|Q9FKP6-1|Q9FKP6_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=MNA5.17 PE=1 SV=1 CANONICAL=Q9FKP6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BGK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGK1/entry", "sequence": { "sequence": "MFREAGLRNIGEDVDSRWTIGNRKLDAKSVPNANSGHGFGFRSAPPLSSSIKPVRGNNNGGSSSDMDIASDSDEEIFERQHSPQDYRIHLGLPHVAAQNGLGRNGAKVFGAADDLSDSATSTEVSYEAEACGVRNNISSHNEFERRNVEAGTSGRTLNGTSTSTSSLPRFPTFHASEQGPWSAMIAYEACVRLCLHSWSTDSVSEASYFLNNECTIMRNAFSLQRFFLHSEEELLGKGPSELVTETSVPKSKKTIGKIKLQVRRIKMGLDPPPGCNIATLTVSKEKLEVVRHHIVELNSTLSSGWKAARKVHVTPQVPLNGSLSRQSLAYMQAAARYLKQVSKAVKKEIVTSHTGPQTYEAVQETYSCSLRLKSSPEDDQIKTQPGSGETFIFLPDSLGDDLIIEVRDSKAQLLGRVVAQLAAMADDPSEKLRWLPIYHEPEHELIGRIQLTFSYSSSLDEKTKCGLVAETSAYDLVLEVAMKAERFQRRNLLFKGPWHWMITRFASYYGVSDAYTRLRYLSYVMDVASPTKDCLDLIHDFLFPIIMTSNHRAVLSHQENRLLGEIDEQIQQILASAFENYKSLAELSFSGMKDVFESATGTPAPAIESAVKLYGLLNDVLTPEAQLKLCRYFQAASKKRSRRHLLDTNDLLNNRSEGVPVDPMVLAASYQKMKSLILSLKNEISTDIAIHDCNVLPSFIDLPNHSAAIYSVDVCNRLREFLLVWPPPGPSPAVVDLVITTADFQRDLSSWHINPIKGGVNAKELFYSYITTWIEEKRRVLYELCKLETSKACVEIPGLTSPFVDEMYERLNGTLDEYDIIIRRWPEYAISLEKVVADSEKAIVEAMEKQFTEILSPLKESKIFGLKIVKKFTKGTPNPYSVPKELGVLLNSMKRVLDILRPSIENRFKSWNSYIPDGENRVLGERLSEVTVLLRSKFRSYMQALVEKLAENTRIQSHMKLKTIIHDLRETTAEPDVRNRMTSLKDLLDKTIDHLHGVFLPDVFVAICRGIWDRMGQVRDIITFHYTGWFCLLLLPLLFCSVYSRMCFVFWKTGKIM", "length": 1057, "header": "tr|A0A1P8BGK1-1|Q9FKP6_ARATH Computationally mapped isoform of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=MNA5.17 PE=1 SV=1 CANONICAL=Q9FKP6-1" }, "locus": { "chromosome": "5", "start_pos": 26151333, "end_pos": 26156623, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G65440.5", "url": "https://www.ensemblgenomes.org/id/AT5G65440.5" }, { "database": "Ensembl Peptide", "id": "AT5G65440.5", "url": "https://www.ensemblgenomes.org/id/AT5G65440.5" } ] } }, { "isoform_ac": "B3H553-1", "url": "https://www.uniprot.org/uniprotkb/B3H553/entry", "sequence": { "sequence": "MFREAGLRNIGEDVDSRWTIGNRKLDAKSVPNANSGHGFGFRSAPPLSSSIKPVRAQNGLGRNGAKVFGAADDLSDSATSTEVSYEAEACGVRNNISSHNEFERRNVEAGTSGRTLNGTSTSTSSLPRFPTFHASEQGPWSAMIAYEACVRLCLHSWSTDSVSEASYFLNNECTIMRNAFSLQRFFLHSEEELLGKGPSELVTETSVPKSKKTIGKIKLQVRRIKMGLDPPPGCNIATLTVSKEKLEVVRHHIVELNSTLSSGWKAARKVHVTPQVPLNGSLSRQSLAYMQAAARYLKQVSKAVKKEIVTSHTGPQTYEAVQETYSCSLRLKSSPEDDQIKTQPGSGETFIFLPDSLGDDLIIEVRDSKAQLLGRVVAQLAAMADDPSEKLRWLPIYHEPEHELIGRIQLTFSYSSSLDEKTKCGLVAETSAYDLVLEVAMKAERFQRRNLLFKGPWHWMITRFASYYGVSDAYTRLRYLSYVMDVASPTKDCLDLIHDFLFPIIMTSNHRAVLSHQENRLLGEIDEQIQQILASAFENYKSLAELSFSGMKDVFESATGTPAPAIESAVKLYGLLNDVLTPEAQLKLCRYFQAASKKRSRRHLLDTNDLLNNRSEGVPVDPMVLAASYQKMKSLILSLKNEISTDIAIHDCNVLPSFIDLPNHSAAIYSVDVCNRLREFLLVWPPPGPSPAVVDLVITTADFQRDLSSWHINPIKGGVNAKELFYSYITTWIEEKRRVLYELCKLETSKACVEIPGLTSPFVDEMYERLNGTLDEYDIIIRRWPEYAISLEKVVADSEKAIVEAMEKQFTEILSPLKESKIFGLKIVKKFTKGTPNPYSVPKELGVLLNSMKRVLDILRPSIENRFKSWNSYIPDGENRVLGERLSEVTVLLRSKFRSYMQALVEKLAENTRIQSHMKLKTIIHDLRETTAEPDVRNRMTSLKDLLDKTIDHLHGVFLPDVFVAICRGIWDRMGQVRDIITFHYTGWFCLLLLPLLFCSVYSRMCFVFWKTGKIM", "length": 1016, "header": "tr|B3H553-1|Q9FKP6_ARATH Computationally mapped isoform of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=MNA5.17 PE=1 SV=1 CANONICAL=Q9FKP6-1" }, "locus": { "chromosome": "5", "start_pos": 26151333, "end_pos": 26157099, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G65440.2", "url": "https://www.ensemblgenomes.org/id/AT5G65440.2" }, { "database": "Ensembl Peptide", "id": "AT5G65440.2", "url": "https://www.ensemblgenomes.org/id/AT5G65440.2" } ] } }, { "isoform_ac": "F4KHY8-1", "url": "https://www.uniprot.org/uniprotkb/F4KHY8/entry", "sequence": { "sequence": "MFREAGLRNIGEDVDSRWTIGNRKLDAKSVPNANSGHGFGFRSAPPLSSSIKPVRGNNNGGSSSDMDIASDSDEEIFERQHSPQDYRIHLGLPHVAAQNGLGRNGAKVFGAADDLSDSATSTEVSYEAEACGVRNNISSHNEFERRNVEAGTSGRTLNGTSTSTSSLPRFPTFHASEQGPWSAMIAYEACVRLCLHSWSTDSVSEASYFLNNECTIMRNAFSLQRFFLHSEEELLGKGPSELVTETSVPKSKKTIGKIKLQVRRIKMGLDPPPGCNIATLTVSKEKLEVVRHHIVELNSTLSSGWKAARKVHVTPQVPLNGSLSRQSLAYMQAAARYLKQVSKAVKKEIVTSHTGPQTYEAVQETYSCSLRLKSSPEDDQIKTQPGSGETFIFLPDSLGDDLIIEVRDSKAQLLGRVVAQLAAMADDPVRFSLSHSHYVFRLLIPLDAEAEDLMFFLFFLNQSEKLRWLPIYHEPEHELIGRIQLTFSYSSSLDEKTKCGLVAETSAYDLVLEVAMKAERFQRRNLLFKGPWHWMITRFASYYGVSDAYTRLRYLSYVMDVASPTKDCLDLIHDFLFPIIMTSNHRAVLSHQENRLLGEIDEQIQQILASAFENYKSLAELSFSGMKDVFESATGTPAPAIESAVKLYGLLNDVLTPEAQLKLCRYFQAASKKRSRRHLLDTNDLLNNRSEGVPVDPMVLAASYQKMKSLILSLKNEISTDIAIHDCNVLPSFIDLPNHSAAIYSVDVCNRLREFLLVWPPPGPSPAVVDLVITTADFQRDLSSWHINPIKGGVNAKELFYSYITTWIEEKRRVLYELCKLETSKACVEIPGLTSPFVDEMYERLNGTLDEYDIIIRRWPEYAISLEKVVADSEKAIVEAMEKQFTEILSPLKESKIFGLKIVKKFTKGTPNPYSVPKELGVLLNSMKRVLDILRPSIENRFKSWNSYIPDGENRVLGERLSEVTVLLRSKFRSYMQALVEKLAENTRIQSHMKLKTIIHDLRETTAEPDVRNRMTSLKDLLDKTIDHLHGVFLPDVFVAICRGIWDRMGQDVLRLLEDRKDNVTWHKGPRIAVSVLDEIFATQMQSLLGNGLKPEHLEPPRSMMELRSMLCKDSTDYREGGYNY", 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Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, 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Cell. Proteomics", "date": "2007", "authors": "Maor Rudy, Jones Alex, N\u00fchse Thomas S, Studholme David J, Peck Scott C, Shirasu Ken", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGK1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGK1" } ], "reference": [ { "type": "PubMed", "id": "17272265", "url": "https://glygen.org/publication/PubMed/17272265" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. 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"F4K7I8", "url": "https://www.orthodb.org/?gene=F4K7I8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FGA2", "url": "https://www.orthodb.org/?gene=Q9FGA2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33413", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33413", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33413:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33413:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14009", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14009", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199820", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199820", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G50090", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G50090", 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"MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHGGPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKESKGSDDKLEMVKAINSTKLDNEDQLQMKKQEKERSRISRSWQPSLQSISEGGSS", "length": 159, "header": "tr|Q9FGA2-1|Q9FGA2_ARATH Isoform 1 of D-ribose-binding periplasmic protein OS=Arabidopsis thaliana OX=3702 GN=MPF21.10 PE=4 SV=1 CANONICAL=Q9FGA2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BGN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGN9/entry", "sequence": { "sequence": "MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHGGPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKESKGSDDKLEMVKAINSTKLDNEDQVICDYKDYHV", "length": 139, "header": "tr|A0A1P8BGN9-1|Q9FGA2_ARATH Computationally mapped isoform of D-ribose-binding periplasmic protein OS=Arabidopsis thaliana OX=3702 GN=MPF21.10 PE=4 SV=1 CANONICAL=Q9FGA2-1" }, "locus": { "chromosome": "5", "start_pos": 20369737, "end_pos": 20371262, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G50090.3", "url": "https://www.ensemblgenomes.org/id/AT5G50090.3" }, { "database": "Ensembl Peptide", "id": "AT5G50090.3", "url": "https://www.ensemblgenomes.org/id/AT5G50090.3" } ] } }, { "isoform_ac": "F4K7I8-1", "url": "https://www.uniprot.org/uniprotkb/F4K7I8/entry", "sequence": { "sequence": "MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHGGPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKESKGSDDKLEMVKAINSTKLDNEDQEKERSRISRSWQPSLQSISEGGSS", "length": 153, "header": "tr|F4K7I8-1|Q9FGA2_ARATH Computationally mapped isoform of D-ribose-binding periplasmic protein OS=Arabidopsis thaliana OX=3702 GN=MPF21.10 PE=4 SV=1 CANONICAL=Q9FGA2-1" }, "locus": { "chromosome": "5", "start_pos": 20369851, "end_pos": 20371087, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G50090.2", "url": "https://www.ensemblgenomes.org/id/AT5G50090.2" }, { "database": "Ensembl Peptide", "id": "AT5G50090.2", "url": "https://www.ensemblgenomes.org/id/AT5G50090.2" } ] } }, { "isoform_ac": "Q9FGA2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGA2/entry", "sequence": { "sequence": "MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHGGPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKESKGSDDKLEMVKAINSTKLDNEDQLQMKKQEKERSRISRSWQPSLQSISEGGSS", "length": 159, "header": "tr|Q9FGA2-1|Q9FGA2_ARATH Isoform 1 of D-ribose-binding periplasmic protein OS=Arabidopsis thaliana OX=3702 GN=MPF21.10 PE=4 SV=1 CANONICAL=Q9FGA2-1" }, "locus": { "chromosome": "5", "start_pos": 20369657, "end_pos": 20371391, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G50090.1", "url": "https://www.ensemblgenomes.org/id/AT5G50090.1" }, { "database": "Ensembl Peptide", "id": "AT5G50090.1", "url": "https://www.ensemblgenomes.org/id/AT5G50090.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGN9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGN9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGN9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGN9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G50090", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G50090", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FGA2", "url": "https://www.uniprot.org/uniprotkb/Q9FGA2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 120, "end_pos": 122 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FJT2-1", "uniprot_ac": "Q9FJT2", "uniprot_id": "FDL40_ARATH", "mass": { "chemical_mass": 49153.0, "monoisotopic_mass": 49153.0 }, "refseq": {}, "gene_names": [ { "name": "MIK19.28", "type": "recommended", "evidence": [ { "id": "Q9FJT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJT2" } ] }, { "name": "MIK19.28", "type": "synonym", "evidence": [ { "id": "Q9FJT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJT2" } ] }, { "name": 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}, { "id": "Q9FJT2", "url": "https://www.orthodb.org/?gene=Q9FJT2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": 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"MEAARSGIEDVTSPDRISQLPNDLLFRILSLIPVSDAMSTSLLSKRWKSVWKMLPTLVYNENSCSNIGSLGFDQFCGRSLQLHEAPLLKTLTLELRKQTDSLDSSIFPNIHSTLLEFSIKSTGYPVYYSTISFPNNLDVFQTLVVLKLQGNICLDVVDSPVCFQSLKSLYLTCVNFENEESFSKLLSACPVLEDLFLQRLCSVGRFLFSISVPSLQRLTYTKEQAYYSNDEAILEITAPSLKHLNIFDRVGVFSFIEDMPKLVEASVRVKLSKNEKLPKVLTSVEHLSLDLYPSMVFHLDDRFISKQLLHLKLDIYDNFQSNLLLSLLKDLPNLQSLKLNHSHPSYNVEDQPCSVSEPSSVPECLSFHLETFQWIGYAGTFEEIAAAVYVLKNARCLKNATISLYSRGTENGLMMIKELESMSKGSIMCQLLVKF", "length": 435, "header": "sp|Q9FJT2-1|FDL40_ARATH Isoform 1 of Putative F-box/FBD/LRR-repeat protein At5g56810 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FJT2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BH62-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BH62/entry", "sequence": { "sequence": "MEAARSGIEDVTSPDRISQLPNDLLFRILSLIPVSDAMSTSLLSKRWKSVWKMLPTLVYNENSCSNIGSLGFDQFCGRSLQLHEAPLLKTLTLELRKQTDSLDSSIFPNIHSTLLEFSIKSTGYPVYYSTISFPNNLDVFQTLVVLKLQGNICLDVVDSPVCFQSLKSLYLTCVNFENEESFSKLLSACPVLEDLFLQRLCSVGRFLFSISVPSLQRLTYTKEQAYYSNDEAILEITAPSLKHLNIFDRVGVFSFIEDMPKLVEASVRVKLSKNEKLPKVLTSVEHLSLDLYPSMVTSFFSRKLGFVYL", "length": 309, "header": "tr|A0A1P8BH62-1|FDL40_ARATH Computationally mapped isoform of Putative F-box/FBD/LRR-repeat protein At5g56810 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FJT2-1" }, "locus": { "chromosome": "5", "start_pos": 22974375, "end_pos": 22976080, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56810.2", "url": "https://www.ensemblgenomes.org/id/AT5G56810.2" }, { "database": "Ensembl Peptide", "id": "AT5G56810.2", "url": "https://www.ensemblgenomes.org/id/AT5G56810.2" } ] } }, { "isoform_ac": "Q9FJT2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FJT2/entry#Q9FJT2-1", "sequence": { "sequence": "MEAARSGIEDVTSPDRISQLPNDLLFRILSLIPVSDAMSTSLLSKRWKSVWKMLPTLVYNENSCSNIGSLGFDQFCGRSLQLHEAPLLKTLTLELRKQTDSLDSSIFPNIHSTLLEFSIKSTGYPVYYSTISFPNNLDVFQTLVVLKLQGNICLDVVDSPVCFQSLKSLYLTCVNFENEESFSKLLSACPVLEDLFLQRLCSVGRFLFSISVPSLQRLTYTKEQAYYSNDEAILEITAPSLKHLNIFDRVGVFSFIEDMPKLVEASVRVKLSKNEKLPKVLTSVEHLSLDLYPSMVFHLDDRFISKQLLHLKLDIYDNFQSNLLLSLLKDLPNLQSLKLNHSHPSYNVEDQPCSVSEPSSVPECLSFHLETFQWIGYAGTFEEIAAAVYVLKNARCLKNATISLYSRGTENGLMMIKELESMSKGSIMCQLLVKF", "length": 435, "header": "sp|Q9FJT2-1|FDL40_ARATH Isoform 1 of Putative F-box/FBD/LRR-repeat protein At5g56810 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FJT2-1" }, "locus": { "chromosome": "5", "start_pos": 22974363, "end_pos": 22976112, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56810.1", "url": "https://www.ensemblgenomes.org/id/AT5G56810.1" }, { "database": "Ensembl Peptide", "id": "AT5G56810.1", "url": "https://www.ensemblgenomes.org/id/AT5G56810.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BH62", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BH62" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BH62", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BH62" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Kotani H, Nakamura Y, Sato S, Asamizu E, Kaneko T, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FJT2", "url": "https://www.uniprot.org/uniprotkb/Q9FJT2" } ], "reference": [ { "type": "PubMed", "id": "9734815", "url": "https://glygen.org/publication/PubMed/9734815" } ] } ], "pathway": [ { "id": "ath:AT5G56810", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G56810", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FJT2", "url": "https://www.uniprot.org/uniprotkb/Q9FJT2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 340, "end_pos": 342, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FJT2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 435, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FJT2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FJT2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FJT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJT2" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 14, "end_pos": 62, "start_aa": "Pro", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 340, "end_pos": 342 }, { "start_pos": 399, "end_pos": 401 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHY7" } ] }, { "name": "MJC20.6", "type": "synonym", "evidence": [ { "id": "NP_199011", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199011" } ] }, { "name": "MJC20_6", "type": "synonym", "evidence": [ { "id": "NP_199011", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199011" }, { "id": "Q9FHY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHY7" } ] } ], "protein_names": [ { "name": "Zinc finger matrin-type protein", "type": "synonym", "evidence": [ { "id": "Q9FHY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHY7/entry#names_and_taxonomy" } ] }, { "name": "zinc finger matrin-type protein", "type": "synonym", "evidence": [ { "id": "NP_199011", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199011" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FHY7", "url": "https://www.uniprot.org/uniprotkb/Q9FHY7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MJC20.6", "url": "https://www.uniprot.org/uniprotkb/Q9FHY7", "locus": {} } ], "crossref": [ { "id": "AT5G41960", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G41960", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834201", "url": "https://www.ncbi.nlm.nih.gov/gene/834201", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G41960", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41960", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ESWLPIS", "url": "https://omabrowser.org/oma/group/ESWLPIS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR36804", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36804", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36804:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36804:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_199011", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199011", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G41960", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G41960", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BH69", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BH69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BH69-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BH69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHY7", "url": "https://www.uniprot.org/uniprotkb/Q9FHY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHY7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHY7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASLSCLPICGLSSSASLYTKARLLSSSSSSPSPLPLAYPLQNPKKLCRKIERVICRAEFSQDAPLVTAIGACILSSFVFPVAKRVNDEEEEEENSAIVSTDMRLAAMGIISFIPYFNWLSWVFAWLDTGKSRYAVYALVYLVPYLSSNLSISPEESWLPITSIVLGIIHVQLEASIANGDVETLAFFRNTSDDDFSSKKRIHFKKHFKGKNSDDEN", "length": 217, "header": "tr|Q9FHY7-1|Q9FHY7_ARATH Isoform 1 of Zinc finger matrin-type protein OS=Arabidopsis thaliana OX=3702 GN=MJC20.6 PE=1 SV=1 CANONICAL=Q9FHY7-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BH69-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BH69/entry", "sequence": { "sequence": "MASLSCLPICGLSSSASLYTKARLLSSSSSSPSPLPLAYPLQNPKKLCRKIERVICRAEFSQDAPLVTAIGACILSSFVFPVAKRVNDEEEEEENSAIVSTDMRLAAMGIISFIPYFNWLSWVFAWLDTGKSRYAVYALVYLVPYLRRELVTNYKHCLGHYSCSA", "length": 165, "header": "tr|A0A1P8BH69-1|Q9FHY7_ARATH Computationally mapped isoform of Zinc finger matrin-type protein OS=Arabidopsis thaliana OX=3702 GN=MJC20.6 PE=1 SV=1 CANONICAL=Q9FHY7-1" }, "locus": { "chromosome": "5", "start_pos": 16789631, "end_pos": 16791042, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G41960.2", "url": "https://www.ensemblgenomes.org/id/AT5G41960.2" }, { "database": "Ensembl Peptide", "id": "AT5G41960.2", "url": "https://www.ensemblgenomes.org/id/AT5G41960.2" } ] } }, { "isoform_ac": "Q9FHY7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHY7/entry", "sequence": { "sequence": "MASLSCLPICGLSSSASLYTKARLLSSSSSSPSPLPLAYPLQNPKKLCRKIERVICRAEFSQDAPLVTAIGACILSSFVFPVAKRVNDEEEEEENSAIVSTDMRLAAMGIISFIPYFNWLSWVFAWLDTGKSRYAVYALVYLVPYLSSNLSISPEESWLPITSIVLGIIHVQLEASIANGDVETLAFFRNTSDDDFSSKKRIHFKKHFKGKNSDDEN", "length": 217, "header": "tr|Q9FHY7-1|Q9FHY7_ARATH Isoform 1 of Zinc finger matrin-type protein OS=Arabidopsis thaliana OX=3702 GN=MJC20.6 PE=1 SV=1 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"MARKGSHQKNGMDNQTKQKKKTASDSLLSNKGQGKNNEAESVLKENCQDDKQTKSSPVCETLERDMDEAKGAASLKDIDQSVASESDLAGGSRPRNEPGFTTEETRYIPFGREHIDSVMRSLLDILSTNSPSENIELAYNAVLRKLRISTATVSREMTKCMERHRPLIDSVKLRVYKGRDLVLTKMRQVFPVVFRWLMHFGSIILLLSLVWLDCAIRGFDSFIRMGTASFFSIMWCGLFSAFSMFGMTKFILISVATVLVALFIGFVVGSVTLAISGLVLLWLYGSFWTTLLFLFFGGLAFMMKHERVALFIITVYSVYSALSYVGWLGLLLAFNLAFISTDALIYFFKNKINQQSTADRPTEPVNDSSFENGPGFPGDRGPGVASTSGTDSELTSEDEIARLLNCPDHYSALGLARYGNVDMAYLKREYRKKAMLVHPDKNMGNERAAEAFKKLQNAYEVLLDSVKQKSYDDELKREELLNYFRRFQNSSQKDTRGHGFSGSGFGSSEGEGEEAFRECRQIACKKCGNLHAWFLTKKSKSTARWCQDCKEFHQAKDGDGWVEQASQHVLFGLFQKVDMPRAYVCADSKIYEASQWYICQGMRCPANTHKPSFHVNMNATAAKRGTSGSSGQKGNQRMPNTNPDETMTEEEFYEWLQNAVQSGMFDNARENPSSATASSTSSSSSKKKKKGKKQW", "length": 695, "header": "tr|Q9FGY8-1|Q9FGY8_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FGY8-1" }, "isoforms": [ { "isoform_ac": "A0A1R7T373-1", "url": "https://www.uniprot.org/uniprotkb/A0A1R7T373/entry", "sequence": { 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"database": "Ensembl Peptide", "id": "AT5G49580.2", "url": "https://www.ensemblgenomes.org/id/AT5G49580.2" } ] } }, { "isoform_ac": "Q9FGY8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGY8/entry", "sequence": { "sequence": "MARKGSHQKNGMDNQTKQKKKTASDSLLSNKGQGKNNEAESVLKENCQDDKQTKSSPVCETLERDMDEAKGAASLKDIDQSVASESDLAGGSRPRNEPGFTTEETRYIPFGREHIDSVMRSLLDILSTNSPSENIELAYNAVLRKLRISTATVSREMTKCMERHRPLIDSVKLRVYKGRDLVLTKMRQVFPVVFRWLMHFGSIILLLSLVWLDCAIRGFDSFIRMGTASFFSIMWCGLFSAFSMFGMTKFILISVATVLVALFIGFVVGSVTLAISGLVLLWLYGSFWTTLLFLFFGGLAFMMKHERVALFIITVYSVYSALSYVGWLGLLLAFNLAFISTDALIYFFKNKINQQSTADRPTEPVNDSSFENGPGFPGDRGPGVASTSGTDSELTSEDEIARLLNCPDHYSALGLARYGNVDMAYLKREYRKKAMLVHPDKNMGNERAAEAFKKLQNAYEVLLDSVKQKSYDDELKREELLNYFRRFQNSSQKDTRGHGFSGSGFGSSEGEGEEAFRECRQIACKKCGNLHAWFLTKKSKSTARWCQDCKEFHQAKDGDGWVEQASQHVLFGLFQKVDMPRAYVCADSKIYEASQWYICQGMRCPANTHKPSFHVNMNATAAKRGTSGSSGQKGNQRMPNTNPDETMTEEEFYEWLQNAVQSGMFDNARENPSSATASSTSSSSSKKKKKGKKQW", "length": 695, "header": "tr|Q9FGY8-1|Q9FGY8_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FGY8-1" }, "locus": { "chromosome": "5", "start_pos": 20123593, "end_pos": 20127509, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G49580.1", "url": "https://www.ensemblgenomes.org/id/AT5G49580.1" }, { "database": "Ensembl Peptide", "id": "AT5G49580.1", "url": "https://www.ensemblgenomes.org/id/AT5G49580.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1R7T373", "url": "https://www.uniprot.org/uniprotkb/A0A1R7T373" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1R7T373", "url": "https://www.uniprot.org/uniprotkb/A0A1R7T373" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G49580", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G49580", "resource": "KEGG Pathway" } ], 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Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A2H1ZE72", "url": "https://www.uniprot.org/uniprotkb/A0A2H1ZE72" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Diversity of the superfamily of phloem lectins (phloem protein 2) in angiosperms.", "journal": "Plant Physiol.", "date": "2003", "authors": "Dinant Sylvie, Clark Anna M, Zhu Yanmin, Vilaine Fran\u00e7oise, Palauqui 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12265:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05705", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05705", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199238", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199238", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G44250", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G44250", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A8MQK0", "url": "https://www.uniprot.org/uniprotkb/A8MQK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A8MQK0-1", "url": "https://www.uniprot.org/uniprotkb/A8MQK0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FFG7", "url": "https://www.uniprot.org/uniprotkb/Q9FFG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FFG7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FFG7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWGIGGNYYWRKKNNNGGESEAIVVVFAWMSSEERNLKNHVDLYSSLLWDSLVCHSQFLNMFLPDKAADLASNVVSELVKELKAKPVPLVFASFSGGPNACMYKVLQILEGTCETGLNPDDCRLVRNCISGFIYDSCPVDFTSDLGARLAVHPTTLKMSSPPKPFVWAANGIASSLDYVFLNRFESQRAEYWQTLYSTIIMRVPYLILCSENDDLAPYQTIHNFATRLQELGGNVKLVKWNDSPHCGHYRYNQVDYKAAVSEFLSKAASVYSQKTRSLDREAMKGTCHDEITEPIQSLGQSTSGLNRSFNGTPLVTTDHFFVPSTVGYYVGRDGGYVQDEHKQDLICLSNTQTNESVKPNGVLGQILFDVYIPKNVEDWDIKLSETGRSRRRPGKRFIRRSRL", "length": 403, "header": "tr|Q9FFG7-1|Q9FFG7_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MLN1.18 PE=1 SV=1 CANONICAL=Q9FFG7-1" }, "isoforms": [ { "isoform_ac": "A8MQK0-1", "url": "https://www.uniprot.org/uniprotkb/A8MQK0/entry", "sequence": { "sequence": "MYKVLQILEGTCETGLNPDDCRLVRNCISGFIYDSCPVDFTSDLGARLAVHPTTLKMSSPPKPFVWAANGIASSLDYVFLNRFESQRAEYWQTLYSTIIMRVPYLILCSENDDLAPYQTIHNFATRLQELGGNVKLVKWNDSPHCGHYRYNQVDYKAAVSEFLSKAASVYSQKTRSLDREAMKGTCHDEITEPIQSLGQSTSGLNRSFNGTPLVTTDHFFVPSTVGYYVGRDGGYVQDEHKQDLICLSNTQTNESVKPNGVLGQILFDVYIPKNVEDWDIKLSETGRSRRRPGKRFIRRSRL", "length": 302, "header": "tr|A8MQK0-1|Q9FFG7_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MLN1.18 PE=1 SV=1 CANONICAL=Q9FFG7-1" }, "locus": { "chromosome": "5", "start_pos": 17823745, "end_pos": 17825762, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G44250.2", "url": "https://www.ensemblgenomes.org/id/AT5G44250.2" }, { "database": "Ensembl Peptide", "id": "AT5G44250.2", "url": "https://www.ensemblgenomes.org/id/AT5G44250.2" } ] } }, { "isoform_ac": "Q9FFG7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FFG7/entry", "sequence": { "sequence": "MWGIGGNYYWRKKNNNGGESEAIVVVFAWMSSEERNLKNHVDLYSSLLWDSLVCHSQFLNMFLPDKAADLASNVVSELVKELKAKPVPLVFASFSGGPNACMYKVLQILEGTCETGLNPDDCRLVRNCISGFIYDSCPVDFTSDLGARLAVHPTTLKMSSPPKPFVWAANGIASSLDYVFLNRFESQRAEYWQTLYSTIIMRVPYLILCSENDDLAPYQTIHNFATRLQELGGNVKLVKWNDSPHCGHYRYNQVDYKAAVSEFLSKAASVYSQKTRSLDREAMKGTCHDEITEPIQSLGQSTSGLNRSFNGTPLVTTDHFFVPSTVGYYVGRDGGYVQDEHKQDLICLSNTQTNESVKPNGVLGQILFDVYIPKNVEDWDIKLSETGRSRRRPGKRFIRRSRL", "length": 403, "header": "tr|Q9FFG7-1|Q9FFG7_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MLN1.18 PE=1 SV=1 CANONICAL=Q9FFG7-1" }, "locus": { "chromosome": "5", "start_pos": 17823714, "end_pos": 17825762, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G44250.1", "url": "https://www.ensemblgenomes.org/id/AT5G44250.1" }, { "database": "Ensembl Peptide", "id": "AT5G44250.1", "url": "https://www.ensemblgenomes.org/id/AT5G44250.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A8MQK0", "url": "https://www.uniprot.org/uniprotkb/A8MQK0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A8MQK0", "url": "https://www.uniprot.org/uniprotkb/A8MQK0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G44250", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G44250", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FFG7", "url": "https://www.uniprot.org/uniprotkb/Q9FFG7" } ], "pmid": "" }, { "name": "peroxisome", "id": "GO:0005777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005777", "evidence": [ { "database": "UniProtKB", "id": "Q9FFG7", "url": "https://www.uniprot.org/uniprotkb/Q9FFG7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 306, "end_pos": 308, "annotation": "n_glycosylation_sequon" }, { "start_pos": 310, "end_pos": 312, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 241, "end_pos": 243 }, { "start_pos": 306, "end_pos": 308 }, { "start_pos": 310, "end_pos": 312 }, { "start_pos": 354, "end_pos": 356 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FIK6-1", "uniprot_ac": "Q9FIK6", "uniprot_id": "Q9FIK6_ARATH", "mass": { "chemical_mass": 38861.0, "monoisotopic_mass": 38861.0 }, "refseq": { "ac": "NP_001330995", "name": "Sec14p-like phosphatidylinositol transfer family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001330995" }, "gene_names": [ { "name": "MCA23.5", "type": "recommended", "evidence": [ { "id": "Q9FIK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIK6" } ] }, { "name": "MCA23.5", "type": "synonym", "evidence": [ { "id": "NP_001330995", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001330995" } ] }, { "name": "MCA23_5", "type": "synonym", "evidence": [ { "id": "NP_001330995", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001330995" }, { "id": "Q9FIK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIK6" } ] } ], "protein_names": [ { "name": "Sec14p-like phosphatidylinositol transfer family protein", "type": "synonym", "evidence": [ { "id": "NP_001330995", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001330995" }, { "id": "Q9FIK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIK6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FIK6", "url": "https://www.uniprot.org/uniprotkb/Q9FIK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MCA23.5", "url": "https://www.uniprot.org/uniprotkb/Q9FIK6", "locus": {} } ], "crossref": [ { "id": "AT5G47730", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G47730", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00170", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00170", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "834824", "url": "https://www.ncbi.nlm.nih.gov/gene/834824", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011074", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011074", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036273", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036273", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G47730", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G47730", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VCKAKTM", "url": "https://omabrowser.org/oma/group/VCKAKTM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A8MQW6", "url": "https://www.orthodb.org/?gene=A8MQW6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FIK6", "url": "https://www.orthodb.org/?gene=Q9FIK6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46226:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46226:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00650", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00650", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001330995", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001330995", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G47730", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G47730", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A8MQW6", "url": "https://www.uniprot.org/uniprotkb/A8MQW6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A8MQW6-1", "url": "https://www.uniprot.org/uniprotkb/A8MQW6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FIK6", "url": "https://www.uniprot.org/uniprotkb/Q9FIK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FIK6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGIVSEEAIDEFQELMDQVEEPLKKTYERVHQGYLRENLGRFLKARDWNVCKAHTMLVECLRWRVDNEIDSILSKPIVPTELYRDVRDSQLIGMSGYTKEGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVLLPSISKKNGRPITTCVKVLDMTGLKLSALSQIKLVTIISTIDDLNYPEKTNTYYVVNAPYIFSACWKVVKPLLQERTRKKVHVLSGCGRDELLKIMDFTSLPHFCRSGSSGSSHHTQSANCFSINHPFHQQLYNYVKHHYETQGQAEPAKQGSFHVGFPEPEAERCVIAKTIESELHKFENRNGLAVSIDDRKSSHETLANGDL", "length": 341, "header": "tr|Q9FIK6-1|Q9FIK6_ARATH Isoform 1 of Sec14p-like phosphatidylinositol transfer family protein OS=Arabidopsis thaliana OX=3702 GN=MCA23.5 PE=1 SV=1 CANONICAL=Q9FIK6-1" }, "isoforms": [ { "isoform_ac": "A8MQW6-1", "url": "https://www.uniprot.org/uniprotkb/A8MQW6/entry", "sequence": { "sequence": "MLVECLRWRVDNEIDSILSKPIVPTELYRDVRDSQLIGMSGYTKEGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVLLPSISKKNGRPITTCVKVLDMTGLKLSALSQIKLVTIISTIDDLNYPEKTNTYYVVNAPYIFSACWKVVKPLLQERTRKKVHVLSGCGRDELLKIMDFTSLPHFCRSGSSGSSHHTQSANCFSINHPFHQQLYNYVKHHYETQGQAEPAKQGSFHVGFPEPEAERCVIAKTIESELHKFENRNGLAVSIDDRKSSHETLANGDL", "length": 286, "header": "tr|A8MQW6-1|Q9FIK6_ARATH Computationally mapped isoform of Sec14p-like phosphatidylinositol transfer family protein OS=Arabidopsis thaliana OX=3702 GN=MCA23.5 PE=1 SV=1 CANONICAL=Q9FIK6-1" }, "locus": { "chromosome": "5", "start_pos": 19334250, "end_pos": 19336390, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G47730.3", "url": "https://www.ensemblgenomes.org/id/AT5G47730.3" }, { "database": "Ensembl Peptide", "id": "AT5G47730.3", "url": "https://www.ensemblgenomes.org/id/AT5G47730.3" } ] } }, { "isoform_ac": "Q9FIK6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIK6/entry", "sequence": { "sequence": "MGIVSEEAIDEFQELMDQVEEPLKKTYERVHQGYLRENLGRFLKARDWNVCKAHTMLVECLRWRVDNEIDSILSKPIVPTELYRDVRDSQLIGMSGYTKEGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVLLPSISKKNGRPITTCVKVLDMTGLKLSALSQIKLVTIISTIDDLNYPEKTNTYYVVNAPYIFSACWKVVKPLLQERTRKKVHVLSGCGRDELLKIMDFTSLPHFCRSGSSGSSHHTQSANCFSINHPFHQQLYNYVKHHYETQGQAEPAKQGSFHVGFPEPEAERCVIAKTIESELHKFENRNGLAVSIDDRKSSHETLANGDL", "length": 341, "header": "tr|Q9FIK6-1|Q9FIK6_ARATH Isoform 1 of Sec14p-like phosphatidylinositol transfer family protein OS=Arabidopsis thaliana OX=3702 GN=MCA23.5 PE=1 SV=1 CANONICAL=Q9FIK6-1" }, "locus": { "chromosome": "5", "start_pos": 19334250, "end_pos": 19337148, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G47730.1", "url": "https://www.ensemblgenomes.org/id/AT5G47730.1" }, { "database": "Ensembl Peptide", "id": "AT5G47730.1", "url": "https://www.ensemblgenomes.org/id/AT5G47730.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 290, "end_pos": 290, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MQW6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MQW6" }, { "database": "iPTMnet", "id": "Q9FIK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIK6" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser290" }, { "start_pos": 332, "end_pos": 332, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MQW6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MQW6" }, { "database": "iPTMnet", "id": "Q9FIK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser332" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A8MQW6", "url": "https://www.uniprot.org/uniprotkb/A8MQW6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FIK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIK6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FIK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A8MQW6", "url": "https://www.uniprot.org/uniprotkb/A8MQW6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G47730", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G47730", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FIK6", "url": "https://www.uniprot.org/uniprotkb/Q9FIK6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FIK6", "url": "https://www.uniprot.org/uniprotkb/Q9FIK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FIK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIK6" }, { "id": "PS50191", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50191" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CRAL-TRIO", "eco_id": "ECO_0000259", "start_pos": 79, "end_pos": 239, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 290, 332 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FF97-1", "uniprot_ac": "Q9FF97", "uniprot_id": "Q9FF97_ARATH", "mass": { "chemical_mass": 18089.0, "monoisotopic_mass": 18089.0 }, "refseq": { "ac": "NP_197772", "name": "MD-2-related lipid recognition domain-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197772" }, "gene_names": [ { "name": "MRO11.13", "type": "recommended", "evidence": [ { "id": "Q9FF97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF97" } ] }, { "name": "MRO11.13", "type": "synonym", "evidence": [ { "id": "NP_197772", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197772" } ] }, { "name": "MRO11_13", "type": "synonym", "evidence": [ { "id": "NP_197772", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197772" }, { "id": "Q9FF97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF97" } ] } ], "protein_names": [ { "name": "MD-2-related lipid recognition domain-containing protein", "type": "synonym", "evidence": [ { "id": "NP_197772", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197772" }, { "id": "Q9FF97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF97/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FF97", "url": "https://www.uniprot.org/uniprotkb/Q9FF97" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MRO11.13", "url": "https://www.uniprot.org/uniprotkb/Q9FF97", "locus": {} } ], "crossref": [ { "id": "cd00917", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00917", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "832448", "url": "https://www.ncbi.nlm.nih.gov/gene/832448", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G23830", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G23830", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RYDICAM", "url": "https://omabrowser.org/oma/group/RYDICAM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "B3H438", "url": "https://www.orthodb.org/?gene=B3H438", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FF97", "url": "https://www.orthodb.org/?gene=Q9FF97", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF02221", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02221", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_197772", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197772", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G23830", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G23830", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "B3H438", "url": "https://www.uniprot.org/uniprotkb/B3H438", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H438-1", "url": "https://www.uniprot.org/uniprotkb/B3H438-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FF97", "url": "https://www.uniprot.org/uniprotkb/Q9FF97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FF97-1", "url": "https://www.uniprot.org/uniprotkb/Q9FF97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAMSHVQPVLFFLASLFFLLALCSANDFEYCTKNGHDYGVVSWIEVFRVGPQENPTLTINVFGTATKEISAGTLVYVAYRSGDFTGLLKTYDLCDVSLACNIDSEIEAGDVFDFSLKDVLYVGFDEGIKYSVSLRQKTAEEEDPIIKMCIDFKVPASASAFVSI", "length": 164, "header": "tr|Q9FF97-1|Q9FF97_ARATH Isoform 1 of MD-2-related lipid recognition domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MRO11.13 PE=1 SV=1 CANONICAL=Q9FF97-1" }, "isoforms": [ { "isoform_ac": "B3H438-1", "url": "https://www.uniprot.org/uniprotkb/B3H438/entry", "sequence": { "sequence": "MAMSHVQPVLFFLASLFFLLALCSANDFEYCTKNGHDYGVVSWIEVFRVGPQENPTLTINVFAKEISAGTLVYVAYRSGDFTGLLKTYDLCDVSLACNIDSEIEAGDVFDFSLKDVLYVGFDEGIKYSVSLRQKTAEEEDPIIKMCIDFKVPASASAFVSI", "length": 161, "header": "tr|B3H438-1|Q9FF97_ARATH Computationally mapped isoform of MD-2-related lipid recognition domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MRO11.13 PE=1 SV=1 CANONICAL=Q9FF97-1" }, "locus": { "chromosome": "5", "start_pos": 8033738, "end_pos": 8034930, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G23830.2", "url": "https://www.ensemblgenomes.org/id/AT5G23830.2" }, { "database": "Ensembl Peptide", "id": "AT5G23830.2", "url": "https://www.ensemblgenomes.org/id/AT5G23830.2" } ] } }, { "isoform_ac": "Q9FF97-1", "url": "https://www.uniprot.org/uniprotkb/Q9FF97/entry", "sequence": { "sequence": "MAMSHVQPVLFFLASLFFLLALCSANDFEYCTKNGHDYGVVSWIEVFRVGPQENPTLTINVFGTATKEISAGTLVYVAYRSGDFTGLLKTYDLCDVSLACNIDSEIEAGDVFDFSLKDVLYVGFDEGIKYSVSLRQKTAEEEDPIIKMCIDFKVPASASAFVSI", "length": 164, "header": "tr|Q9FF97-1|Q9FF97_ARATH Isoform 1 of MD-2-related lipid recognition domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MRO11.13 PE=1 SV=1 CANONICAL=Q9FF97-1" }, "locus": { "chromosome": "5", "start_pos": 8033665, "end_pos": 8034977, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G23830.1", "url": "https://www.ensemblgenomes.org/id/AT5G23830.1" }, { "database": "Ensembl Peptide", "id": "AT5G23830.1", "url": "https://www.ensemblgenomes.org/id/AT5G23830.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "B3H438", "url": "https://www.uniprot.org/uniprotkb/B3H438" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H438", "url": "https://www.uniprot.org/uniprotkb/B3H438" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G23830", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G23830", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular sterol transport", "id": "GO:0032366", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032366", "evidence": [ { "database": "UniProtKB", "id": "Q9FF97", "url": "https://www.uniprot.org/uniprotkb/Q9FF97" } ], "pmid": "" }, { "name": "sterol transport", "id": "GO:0015918", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015918", "evidence": [ { "database": "UniProtKB", "id": "Q9FF97", "url": "https://www.uniprot.org/uniprotkb/Q9FF97" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9FF97", "url": "https://www.uniprot.org/uniprotkb/Q9FF97" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "sterol binding", "id": "GO:0032934", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032934", "evidence": [ { "database": "UniProtKB", "id": "Q9FF97", "url": "https://www.uniprot.org/uniprotkb/Q9FF97" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FF97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF97" }, { "id": "SM00737", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00737" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C824-1", "uniprot_ac": "Q9C824", "uniprot_id": "Q9C824_ARATH", "mass": { "chemical_mass": 90455.0, "monoisotopic_mass": 90455.0 }, "refseq": {}, "gene_names": [ { "name": "F19K6.7", "type": "synonym", "evidence": [ { "id": "Q9C824", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C824" } ] }, { "name": "F19K6_7", "type": "synonym", "evidence": [ { "id": "Q9C824", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C824" } ] } ], "protein_names": [ { "name": "Kinesin-like protein", "type": "synonym", "evidence": [ { "id": "Q9C824", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C824/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C824", "url": "https://www.uniprot.org/uniprotkb/Q9C824" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C824", "locus": {} } ], "crossref": [ { "id": "AT1G52320", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G52320", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "841662", "url": "https://www.ncbi.nlm.nih.gov/gene/841662", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006868", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006868", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G52320", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G52320", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RQFEEWY", "url": "https://omabrowser.org/oma/group/RQFEEWY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21450", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21450", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21450:SF59", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21450:SF59", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04782", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04782", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04783", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04783", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G52320", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G52320", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "B3H4W5", "url": "https://www.uniprot.org/uniprotkb/B3H4W5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H4W5-1", "url": "https://www.uniprot.org/uniprotkb/B3H4W5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ICW0", "url": "https://www.uniprot.org/uniprotkb/F4ICW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ICW0-1", "url": "https://www.uniprot.org/uniprotkb/F4ICW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C824", "url": "https://www.uniprot.org/uniprotkb/Q9C824", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C824-1", "url": "https://www.uniprot.org/uniprotkb/Q9C824-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCAQSKIENEEAVTRCKERKQLMKDAVTARNAFAAAHSAYAMALKNTGAALSDYSHGEFLVSNHSSSSAAAAIASTSSLPTAISPPLPSSTAPVSNSTASSSSAAVPQPIPDTLPPPPPPPPLPLQRAATMPEMNGRSGGGHAGSGLNGIEEDGALDNDDDDDDDDDDSEMENRDRLIRKSRSRGGSTRGNRTTIEDHHLQEEKAPPPPPLANSRPIPPPRQHQHQHQQQQQQPFYDYFFPNVENMPGTTLEDTPPQPQPQPTRPVPPQPHSPVVTEDDEDEEEEEEEEEEEEETVIERKPLVEERPKRVEEVTIELEKVTNLRGMKKSKGIGIPGERRGMRMPVTATHLANVFIELDDNFLKASESAHDVSKMLEATRLHYHSNFADNRGHIDHSARVMRVITWNRSFRGIPNADDGKDDVDLEENETHATVLDKLLAWEKKLYDEVKAGELMKIEYQKKVAHLNRVKKRGGHSDSLERAKAAVSHLHTRYIVDMQSMDSTVSEINRLRDEQLYLKLVHLVEAMGKMWEMMQIHHQRQAEISKVLRSLDVSQAVKETNDHHHERTIQLLAVVQEWHTQFCRMIDHQKEYIKALGGWLKLNLIPIESTLKEKVSSPPRVPNPAIQKLLHAWYDRLDKIPDEMAKSAIINFAAVVSTIMQQQEDEISLRNKCEETRKELGRKIRQFEDWYHKYIQKRGPEGMNPDEADNDHNDEVAVRQFNVEQIKKRLEEEEEAYHRQSHQVREKSLASLRTRLPELFQAMSEVAYSCSDMYRAITYASKRQSQSERHQKPSQGQSS", "length": 798, "header": "tr|Q9C824-1|Q9C824_ARATH Isoform 1 of Kinesin-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C824-1" }, "isoforms": [ { "isoform_ac": "B3H4W5-1", "url": "https://www.uniprot.org/uniprotkb/B3H4W5/entry", "sequence": { "sequence": "MKKSKGIGIPGERRGMRMPVTATHLANVFIELDDNFLKASESAHDVSKMLEATRLHYHSNFADNRGHIDHSARVMRVITWNRSFRGIPNADDGKDDVDLEENETHATVLDKLLAWEKKLYDEVKAGELMKIEYQKKVAHLNRVKKRGGHSDSLERAKAAVSHLHTRYIVDMQSMDSTVSEINRLRDEQLYLKLVHLVEAMGKMWEMMQIHHQRQAEISKVLRSLDVSQAVKETNDHHHERTIQLLAVVQEWHTQFCRMIDHQKEYIKALGGWLKLNLIPIESTLKEKVSSPPRVPNPAIQKLLHAWYDRLDKIPDEMAKSAIINFAAVVSTIMQQQEDEISLRNKCEETRKELGRKIRQFEDWYHKYIQKRGPEGMNPDEADNDHNDEVAVRQFNVEQIKKRLEEEEEAYHRQSHQVREKSLASLRTRLPELFQAMSEVAYSCSDMYRAITYASKRQSQSERHQKPSQGQSS", "length": 472, "header": "tr|B3H4W5-1|Q9C824_ARATH Computationally mapped isoform of Kinesin-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C824-1" }, "locus": { "chromosome": "1", "start_pos": 19485392, "end_pos": 19487941, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G52320.4", "url": "https://www.ensemblgenomes.org/id/AT1G52320.4" }, { "database": "Ensembl Peptide", "id": "AT1G52320.4", "url": "https://www.ensemblgenomes.org/id/AT1G52320.4" } ] } }, { "isoform_ac": "F4ICW0-1", "url": "https://www.uniprot.org/uniprotkb/F4ICW0/entry", "sequence": { "sequence": "MKDAVTARNAFAAAHSAYAMALKNTGAALSDYSHGEFLVSNHSSSSAAAAIASTSSLPTAISPPLPSSTAPVSNSTASSSSAAVPQPIPDTLPPPPPPPPLPLQRAATMPEMNGRSGGGHAGSGLNGIEEDGALDNDDDDDDDDDDSEMENRDRLIRKSRSRGGSTRGNRTTIEDHHLQEEKAPPPPPLANSRPIPPPRQHQHQHQQQQQQPFYDYFFPNVENMPGTTLEDTPPQPQPQPTRPVPPQPHSPVVTEDDEDEEEEEEEEEEEEETVIERKPLVEERPKRVEEVTIELEKVTNLRGMKKSKGIGIPGERRGMRMPVTATHLANVFIELDDNFLKASESAHDVSKMLEATRLHYHSNFADNRGHIDHSARVMRVITWNRSFRGIPNADDGKDDVDLEENETHATVLDKLLAWEKKLYDEVKAGELMKIEYQKKVAHLNRVKKRGGHSDSLERAKAAVSHLHTRYIVDMQSMDSTVSEINRLRDEQLYLKLVHLVEAMGKMWEMMQIHHQRQAEISKVLRSLDVSQAVKETNDHHHERTIQLLAVVQEWHTQFCRMIDHQKEYIKALGGWLKLNLIPIESTLKEKVSSPPRVPNPAIQKLLHAWYDRLDKIPDEMAKSAIINFAAVVSTIMQQQEDEISLRNKCEETRKELGRKIRQFEDWYHKYIQKRGPEGMNPDEADNDHNDEVAVRQFNVEQIKKRLEEEEEAYHRQSHQVREKSLASLRTRLPELFQAMSEVAYSCSDMYRAITYASKRQSQSERHQKPSQGQSS", "length": 775, "header": "tr|F4ICW0-1|Q9C824_ARATH Computationally mapped isoform of Kinesin-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C824-1" }, "locus": { "chromosome": "1", "start_pos": 19484465, "end_pos": 19487204, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G52320.1", "url": "https://www.ensemblgenomes.org/id/AT1G52320.1" }, { "database": "Ensembl Peptide", "id": "AT1G52320.1", "url": "https://www.ensemblgenomes.org/id/AT1G52320.1" } ] } }, { "isoform_ac": "Q9C824-1", "url": "https://www.uniprot.org/uniprotkb/Q9C824/entry", "sequence": { "sequence": "MGCAQSKIENEEAVTRCKERKQLMKDAVTARNAFAAAHSAYAMALKNTGAALSDYSHGEFLVSNHSSSSAAAAIASTSSLPTAISPPLPSSTAPVSNSTASSSSAAVPQPIPDTLPPPPPPPPLPLQRAATMPEMNGRSGGGHAGSGLNGIEEDGALDNDDDDDDDDDDSEMENRDRLIRKSRSRGGSTRGNRTTIEDHHLQEEKAPPPPPLANSRPIPPPRQHQHQHQQQQQQPFYDYFFPNVENMPGTTLEDTPPQPQPQPTRPVPPQPHSPVVTEDDEDEEEEEEEEEEEEETVIERKPLVEERPKRVEEVTIELEKVTNLRGMKKSKGIGIPGERRGMRMPVTATHLANVFIELDDNFLKASESAHDVSKMLEATRLHYHSNFADNRGHIDHSARVMRVITWNRSFRGIPNADDGKDDVDLEENETHATVLDKLLAWEKKLYDEVKAGELMKIEYQKKVAHLNRVKKRGGHSDSLERAKAAVSHLHTRYIVDMQSMDSTVSEINRLRDEQLYLKLVHLVEAMGKMWEMMQIHHQRQAEISKVLRSLDVSQAVKETNDHHHERTIQLLAVVQEWHTQFCRMIDHQKEYIKALGGWLKLNLIPIESTLKEKVSSPPRVPNPAIQKLLHAWYDRLDKIPDEMAKSAIINFAAVVSTIMQQQEDEISLRNKCEETRKELGRKIRQFEDWYHKYIQKRGPEGMNPDEADNDHNDEVAVRQFNVEQIKKRLEEEEEAYHRQSHQVREKSLASLRTRLPELFQAMSEVAYSCSDMYRAITYASKRQSQSERHQKPSQGQSS", "length": 798, "header": "tr|Q9C824-1|Q9C824_ARATH Isoform 1 of Kinesin-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C824-1" }, "locus": { "chromosome": "1", "start_pos": 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isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q9C824", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C824" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, 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"MKFDFTVINRSFEWRQPLLELDAAPSLSQKHQQIAKREEAVKEKIILSQERHIQRLNDLVRSLQMQLQRCKGENETRNATETSHNNKQFIELERKHIVED", "length": 100, "header": "tr|B3H5W3-1|Q9FMS3_ARATH Computationally mapped isoform of Peptidyl-prolyl cis-trans isomerase G OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FMS3-1" }, "locus": { "chromosome": "5", "start_pos": 7373995, "end_pos": 7375719, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22280.2", "url": "https://www.ensemblgenomes.org/id/AT5G22280.2" }, { "database": "Ensembl Peptide", "id": "AT5G22280.2", "url": "https://www.ensemblgenomes.org/id/AT5G22280.2" } ] } }, { "isoform_ac": "F4K8H6-1", "url": "https://www.uniprot.org/uniprotkb/F4K8H6/entry", "sequence": { "sequence": "MSRPIMLVFLLVILIVTSQFEWRQPLLELDAAPSLSQKHQQIAKREEAVKEKMRLVEKHRLIGLATLKFHWMYDEPHNFSIILNLKIEEDLSILSLLIVTDHLVTRETYPEAKRPCTKSSNAVTAMQRRERDTKRH", "length": 136, "header": "tr|F4K8H6-1|Q9FMS3_ARATH Computationally mapped isoform of Peptidyl-prolyl cis-trans 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G68250", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "B3H767", "url": "https://www.uniprot.org/uniprotkb/B3H767", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H767-1", "url": "https://www.uniprot.org/uniprotkb/B3H767-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C9G0", "url": "https://www.uniprot.org/uniprotkb/Q9C9G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C9G0-1", "url": "https://www.uniprot.org/uniprotkb/Q9C9G0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNDRDTVEFWSSLFQSFADSEPKDNPYPVVRSPIMTMSTPMAIDEPVEPWKVLEYGGKEVRPMAIDEPAEPWKALEYGGKDVRPMAIDVPAEPWKVGGKEAQPANAAAEAGYKNVNTDQEKSTQKATEKVIM", "length": 133, "header": "tr|Q9C9G0-1|Q9C9G0_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C9G0-1" }, "isoforms": [ { "isoform_ac": "B3H767-1", "url": "https://www.uniprot.org/uniprotkb/B3H767/entry", "sequence": { "sequence": "MDNDRDTVEFWSSLFQSFADSEPKDNPYPVVRSPIMTMSTPMAIDEPVEPWKVLEYGGKDVRPMAIDVPAEPWKVGGKEAQPANAAAEAGYKNVNTDQEKSTQKATEKVIM", "length": 111, "header": "tr|B3H767-1|Q9C9G0_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C9G0-1" }, "locus": { "chromosome": "1", "start_pos": 25579373, "end_pos": 25580194, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G68250.2", "url": "https://www.ensemblgenomes.org/id/AT1G68250.2" }, { "database": "Ensembl Peptide", "id": "AT1G68250.2", "url": "https://www.ensemblgenomes.org/id/AT1G68250.2" } ] } }, { "isoform_ac": "Q9C9G0-1", "url": "https://www.uniprot.org/uniprotkb/Q9C9G0/entry", "sequence": { "sequence": "MDNDRDTVEFWSSLFQSFADSEPKDNPYPVVRSPIMTMSTPMAIDEPVEPWKVLEYGGKEVRPMAIDEPAEPWKALEYGGKDVRPMAIDVPAEPWKVGGKEAQPANAAAEAGYKNVNTDQEKSTQKATEKVIM", "length": 133, "header": "tr|Q9C9G0-1|Q9C9G0_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C9G0-1" }, "locus": { "chromosome": "1", "start_pos": 25579373, "end_pos": 25580199, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G68250.1", "url": "https://www.ensemblgenomes.org/id/AT1G68250.1" }, { "database": "Ensembl Peptide", "id": "AT1G68250.1", "url": "https://www.ensemblgenomes.org/id/AT1G68250.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "B3H767", "url": "https://www.uniprot.org/uniprotkb/B3H767" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H767", "url": "https://www.uniprot.org/uniprotkb/B3H767" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G68250", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G68250", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9C9G0", "url": "https://www.uniprot.org/uniprotkb/Q9C9G0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], 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"MGGVTSSIAAKFAFFPPSPPSYGFVSDVDRLYITEVPRRDDVDVLKLKTRRGNEIVAIYIKHPKANGTLLYSHGNAADLGQMFELFIELSNRLRLNLMGYDYSGYGQSTGKASECNTYADIDAAYTCLKEHYGVKDDQLILYGQSVGSGPTIDLASRTPNLRGVVLHSPILSGMRVLYPVKRTYWFDIYKNIDKIGAVTCPVLVIHMKWLIVLMENNFGNFQKKSMSLYGYLEEDTAI", "length": 238, "header": "tr|F4KA49-1|Q9FF34_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MXA21.9 PE=1 SV=1 CANONICAL=Q9FF34-1" }, "locus": { "chromosome": "5", "start_pos": 15268783, "end_pos": 15271335, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G38220.2", "url": "https://www.ensemblgenomes.org/id/AT5G38220.2" }, { "database": "Ensembl Peptide", "id": "AT5G38220.2", "url": "https://www.ensemblgenomes.org/id/AT5G38220.2" } ] } }, { "isoform_ac": "Q9FF34-1", "url": "https://www.uniprot.org/uniprotkb/Q9FF34/entry", "sequence": { "sequence": "MGGVTSSIAAKFAFFPPSPPSYGFVSDVDRLYITEVPRRDDVDVLKLKTRRGNEIVAIYIKHPKANGTLLYSHGNAADLGQMFELFIELSNRLRLNLMGYDYSGYGQSTGKASECNTYADIDAAYTCLKEHYGVKDDQLILYGQSVGSGPTIDLASRTPNLRGVVLHSPILSGMRVLYPVKRTYWFDIYKNIDKIGAVTCPVLVIHGTADEVVDCSHGKQLWELSKEKYEPLWVSGGGHCNLELYPEFIKHLKKYVISISKGPRTGSNKTATTDAAKKQSKPAENGRADTFQLGCCLPEVSRNSVDSQLEKSKKTSKPEKSRMSIDRFRRKKGSVW", "length": 336, "header": "tr|Q9FF34-1|Q9FF34_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MXA21.9 PE=1 SV=1 CANONICAL=Q9FF34-1" }, "locus": { "chromosome": "5", "start_pos": 15268674, "end_pos": 15271456, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G38220.1", "url": "https://www.ensemblgenomes.org/id/AT5G38220.1" }, { "database": "Ensembl Peptide", "id": "AT5G38220.1", "url": "https://www.ensemblgenomes.org/id/AT5G38220.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 151, "start_aa": "Thr", "end_pos": 151, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr151", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [ { "start_pos": 304, "end_pos": 304, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FF34", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FF34" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser304" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4KA49", "url": "https://www.uniprot.org/uniprotkb/F4KA49" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FF34", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FF34" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4KA49", "url": "https://www.uniprot.org/uniprotkb/F4KA49" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G38220", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G38220", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9FF34", "url": "https://www.uniprot.org/uniprotkb/Q9FF34" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9FF34", "url": "https://www.uniprot.org/uniprotkb/Q9FF34" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "palmitoyl-(protein) hydrolase activity", "id": "GO:0008474", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008474", "evidence": [ { "database": "UniProtKB", "id": "Q9FF34", "url": "https://www.uniprot.org/uniprotkb/Q9FF34" } ], "pmid": "" } ] } ] }, 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}, { "uniprot_canonical_ac": "Q9FF96-1", "uniprot_ac": "Q9FF96", "uniprot_id": "Q9FF96_ARATH", "mass": { "chemical_mass": 18466.0, "monoisotopic_mass": 18466.0 }, "refseq": { "ac": "NP_197773", "name": "MD-2-related lipid recognition domain-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197773" }, "gene_names": [ { "name": "MRO11.12", "type": "recommended", "evidence": [ { "id": "Q9FF96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF96" } ] }, { "name": "MRO11.12", "type": "synonym", "evidence": [ { "id": "NP_197773", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197773" } ] }, { "name": "MRO11_12", "type": "synonym", "evidence": [ { "id": "NP_197773", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197773" }, { "id": "Q9FF96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF96" } ] } ], "protein_names": [ { "name": "MD-2-related lipid recognition domain-containing protein", "type": "synonym", "evidence": [ { "id": "NP_197773", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197773" }, { "id": "Q9FF96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF96/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FF96", "url": "https://www.uniprot.org/uniprotkb/Q9FF96" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MRO11.12", "url": "https://www.uniprot.org/uniprotkb/Q9FF96", "locus": {} } ], "crossref": [ { "id": "AT5G23840", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G23840", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "832449", "url": "https://www.ncbi.nlm.nih.gov/gene/832449", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G23840", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G23840", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GRYSICK", "url": "https://omabrowser.org/oma/group/GRYSICK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4KEB4", "url": "https://www.orthodb.org/?gene=F4KEB4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FF96", "url": "https://www.orthodb.org/?gene=Q9FF96", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF02221", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02221", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_197773", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197773", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G23840", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G23840", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4KEB4", "url": "https://www.uniprot.org/uniprotkb/F4KEB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4KEB4-1", "url": "https://www.uniprot.org/uniprotkb/F4KEB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FF96", "url": "https://www.uniprot.org/uniprotkb/Q9FF96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FF96-1", "url": "https://www.uniprot.org/uniprotkb/Q9FF96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAMSHIQPVLFFLASLFFLPALCSAIDFEYCTKNGHDYGSISQIWVSPSDGPQENPTITIHLFGSASKDISAGTLVYVTYRSGDFTGLLKTYDLCDVSACNPEYVIEAGTDFELTLSDVLYVGFDEEIKYSVSLREKTSEEKNPIIKMCVDFKVPHPAFPPPALVSM", "length": 167, "header": "tr|Q9FF96-1|Q9FF96_ARATH Isoform 1 of MD-2-related lipid recognition domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MRO11.12 PE=1 SV=1 CANONICAL=Q9FF96-1" }, "isoforms": [ { "isoform_ac": "F4KEB4-1", "url": "https://www.uniprot.org/uniprotkb/F4KEB4/entry", "sequence": { "sequence": "MAMSHIQPVLFFLASLFFLPALCSAIDFEYCTKNGHDYGSISQIWVSPSDGPQENPTITIHLFGSASKDISAGTLVYVTYRSGDFTGLLKTYDLCDVSACNPEYVIEAGTDFELTLSDVLYVGFDEVTCFYNKYKEPNRI", "length": 140, "header": "tr|F4KEB4-1|Q9FF96_ARATH Computationally mapped isoform of MD-2-related lipid recognition domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MRO11.12 PE=1 SV=1 CANONICAL=Q9FF96-1" }, "locus": { "chromosome": "5", "start_pos": 8035767, "end_pos": 8036982, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G23840.2", "url": "https://www.ensemblgenomes.org/id/AT5G23840.2" }, { "database": "Ensembl Peptide", "id": "AT5G23840.2", "url": 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Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4KGJ9", "url": "https://www.uniprot.org/uniprotkb/F4KGJ9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4KGJ9", "url": "https://www.uniprot.org/uniprotkb/F4KGJ9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", 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"id": "Q9FLU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLU4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FLU4", "url": "https://www.uniprot.org/uniprotkb/Q9FLU4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FLU4", "locus": {} } ], "crossref": [ { "id": "AT5G24600", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G24600", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "832531", "url": "https://www.ncbi.nlm.nih.gov/gene/832531", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G24600", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G24600", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MFVACVA", "url": "https://omabrowser.org/oma/group/MFVACVA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4KH70", "url": "https://www.orthodb.org/?gene=F4KH70", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FLU4", "url": "https://www.orthodb.org/?gene=Q9FLU4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31168", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31168", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31168:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31168:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04654", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04654", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G24600", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G24600", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4KH70", "url": "https://www.uniprot.org/uniprotkb/F4KH70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4KH70-1", "url": "https://www.uniprot.org/uniprotkb/F4KH70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLU4", "url": "https://www.uniprot.org/uniprotkb/Q9FLU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLU4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLU4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKREYLDYTLVPLGLALMVFYHLWLLYRIIHRPSSTVVGLNAFNRRLWVQAMMEDSSKNGVLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSATGERSVWFVFGDKSDRAFSLKFFAILVCFLVAFLLNVQSIRYYSHASILINVPFKQLMAVSSGGRGNGSLMINQDYVAATVNRGSYFWSLGLRAFYFSSPLFLWIFGPIPMFITCCVLVCSLYFLDLTFDSMKCSVGAADAEEPEIRSLAQNV", "length": 248, "header": "tr|Q9FLU4-1|Q9FLU4_ARATH Isoform 1 of DUF599 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FLU4-1" }, "isoforms": [ { "isoform_ac": "F4KH70-1", "url": "https://www.uniprot.org/uniprotkb/F4KH70/entry", "sequence": { "sequence": "MKREYLDYTLVPLGLALMVFYHLWLLYRIIHRPSSTVVGLNAFNRRLWVQAMMEDSSKNGVLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSATGERSVWFVFGDKSDRAFSLKFFAILVCFLVAFLLNVQSIRYYSHASILINVPFKQLMAVSSGGRGNGSLMINQDYVAATVNRGSYFWSLGLRAFYFSSPLFLWIFGPIPMFITCCVLVCSLYFLDLTGSDILKRVLFNGTYKSCKLY", "length": 243, "header": "tr|F4KH70-1|Q9FLU4_ARATH Computationally mapped isoform of DUF599 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FLU4-1" }, "locus": { "chromosome": "5", "start_pos": 8421624, "end_pos": 8423499, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G24600.2", "url": "https://www.ensemblgenomes.org/id/AT5G24600.2" }, { "database": "Ensembl Peptide", "id": "AT5G24600.2", "url": "https://www.ensemblgenomes.org/id/AT5G24600.2" } ] } }, { "isoform_ac": "Q9FLU4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLU4/entry", "sequence": { "sequence": "MKREYLDYTLVPLGLALMVFYHLWLLYRIIHRPSSTVVGLNAFNRRLWVQAMMEDSSKNGVLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSATGERSVWFVFGDKSDRAFSLKFFAILVCFLVAFLLNVQSIRYYSHASILINVPFKQLMAVSSGGRGNGSLMINQDYVAATVNRGSYFWSLGLRAFYFSSPLFLWIFGPIPMFITCCVLVCSLYFLDLTFDSMKCSVGAADAEEPEIRSLAQNV", "length": 248, "header": "tr|Q9FLU4-1|Q9FLU4_ARATH Isoform 1 of DUF599 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FLU4-1" }, "locus": { "chromosome": "5", "start_pos": 8421558, "end_pos": 8423525, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G24600.1", "url": "https://www.ensemblgenomes.org/id/AT5G24600.1" }, { "database": "Ensembl Peptide", "id": "AT5G24600.1", "url": "https://www.ensemblgenomes.org/id/AT5G24600.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4KH70", "url": "https://www.uniprot.org/uniprotkb/F4KH70" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4KH70", "url": "https://www.uniprot.org/uniprotkb/F4KH70" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G24600", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G24600", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FLU4", "url": "https://www.uniprot.org/uniprotkb/Q9FLU4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 162, "end_pos": 164 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FKV7-1", "uniprot_ac": "Q9FKV7", "uniprot_id": "Q9FKV7_ARATH", "mass": { 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"reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FKV7", "locus": {} } ], "crossref": [ { "id": "AT5G44310", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G44310", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834454", "url": "https://www.ncbi.nlm.nih.gov/gene/834454", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR060477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G44310", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G44310", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KDKANDM", "url": "https://omabrowser.org/oma/group/KDKANDM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47372", "url": 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"https://www.uniprot.org/uniprotkb/Q3E8H9/entry", "sequence": { "sequence": "MCEEISMVVDFQGRYDPVEKARDSRADLAYDSKKWREESGEYAEAGKGKAHKTKEEAKDKAYDMKERTKDYAEQTKNKVNEGASRAADKAYETKEKAKDKAYDVKEKTKDYAEEAKDKVNEGASRAADKAYETKEKAKDKAYDVKEKTKDFAEETKEKVNEGASRAADKAYDVKEKTKNYAEQTKDKVNEGASRAADKAEETKDKAKDYAEDSKEKAEDMAHGFKEKAQDIGEKTMDTVKDVWETAKSTAQKVTEAVVGSGEEADKARDDVDKGLEDLSKKAKENRNKDDDFKRF", "length": 295, "header": "tr|Q3E8H9-1|Q9FKV7_ARATH Computationally mapped isoform of Late embryogenesis abundant protein (LEA) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FKV7-1" }, "locus": { "chromosome": "5", "start_pos": 17847823, "end_pos": 17849024, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G44310.1", "url": "https://www.ensemblgenomes.org/id/AT5G44310.1" }, { "database": "Ensembl Peptide", "id": "AT5G44310.1", "url": "https://www.ensemblgenomes.org/id/AT5G44310.1" } ] } }, { "isoform_ac": "Q9FKV7-1", "url": 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"end_pos": 26, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKV7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKV7" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr26" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, 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"database": "UniProtKB", "id": "Q3E8H9", "url": "https://www.uniprot.org/uniprotkb/Q3E8H9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FKV7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKV7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q3E8H9", "url": "https://www.uniprot.org/uniprotkb/Q3E8H9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G44310", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G44310", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], 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"categories": [ "Enzyme and Pathway" ] }, { "id": "PRNDEKH", "url": "https://omabrowser.org/oma/group/PRNDEKH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33646", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33646", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33646:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33646:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF20705", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20705", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_197314", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197314", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G18130", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G18130", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q3E9G1", 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"MDLEDWEILPKINYKGLELDLGHEEDHEVTKMMRNTAKSFDSDYFICPIQDSVGKTEFLHQRSSVVPTQLLQIPITWEPLSPVDDKDHNKYLDPDFSEPDPELLTESFPSPRITFKKSKETEFADMKIDSPAARFTSPLPQNDERHSDSEGGLGGESYDEIMGSEVEESSDLSSKKEVDWDEGERTNLWKKGLNGIGAICSFGVAAAAATICVFFLGHNSSIQGGRNKNQILRFQIYSDDNKRMNEVVKHATKLNEAISVMKGLPVARAQISFGGYYDAL", "length": 280, "header": "tr|Q9FK57-1|Q9FK57_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=MRG7.9 PE=1 SV=1 CANONICAL=Q9FK57-1" }, "locus": { "chromosome": "5", "start_pos": 5995323, "end_pos": 5997498, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G18130.1", "url": "https://www.ensemblgenomes.org/id/AT5G18130.1" }, { "database": "Ensembl Peptide", "id": "AT5G18130.1", "url": "https://www.ensemblgenomes.org/id/AT5G18130.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, 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"AT1G52330", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G52330", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "841664", "url": "https://www.ncbi.nlm.nih.gov/gene/841664", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004864", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004864", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044839", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044839", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G52330", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G52330", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IKVHPVP", "url": "https://omabrowser.org/oma/group/IKVHPVP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31234", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31234", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31234:SF69", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31234:SF69", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G52330", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G52330", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q5BPW9", "url": "https://www.uniprot.org/uniprotkb/Q5BPW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q5BPW9-1", "url": "https://www.uniprot.org/uniprotkb/Q5BPW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C825", "url": "https://www.uniprot.org/uniprotkb/Q9C825", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C825-1", "url": "https://www.uniprot.org/uniprotkb/Q9C825-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTVEEDPKATPSLPDYKPLPSSSSHELNDAVLISSHPSPPSRRRFIISIFLISFASILIYIFWPSDPRIKIIRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGGHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLKAKVACGILVDTVNQTISRQSCSPL", "length": 214, "header": "tr|Q9C825-1|Q9C825_ARATH Isoform 1 of Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C825-1" }, "isoforms": [ { "isoform_ac": "Q5BPW9-1", "url": "https://www.uniprot.org/uniprotkb/Q5BPW9/entry", "sequence": { "sequence": "MTVEEDPKATPSLPDYKPLPSSSSHELNDAVLISSHPSPPSRRRFIISIFLISFASILIYIFWPSDPRIKIIRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGGHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLKVRNLSFYSIIWFIKLYTFSSFEFDFLDYIIIENVCSF", "length": 227, "header": "tr|Q5BPW9-1|Q9C825_ARATH Computationally mapped isoform of Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C825-1" }, "locus": { "chromosome": "1", "start_pos": 19488755, "end_pos": 19489914, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G52330.2", "url": "https://www.ensemblgenomes.org/id/AT1G52330.2" }, { "database": "Ensembl Peptide", "id": "AT1G52330.2", "url": "https://www.ensemblgenomes.org/id/AT1G52330.2" } ] } }, { "isoform_ac": "Q9C825-1", "url": "https://www.uniprot.org/uniprotkb/Q9C825/entry", "sequence": { "sequence": "MTVEEDPKATPSLPDYKPLPSSSSHELNDAVLISSHPSPPSRRRFIISIFLISFASILIYIFWPSDPRIKIIRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGGHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLKAKVACGILVDTVNQTISRQSCSPL", "length": 214, "header": "tr|Q9C825-1|Q9C825_ARATH Isoform 1 of Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C825-1" }, "locus": { "chromosome": "1", "start_pos": 19488755, "end_pos": 19489805, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G52330.1", "url": "https://www.ensemblgenomes.org/id/AT1G52330.1" }, { "database": "Ensembl Peptide", "id": "AT1G52330.1", "url": "https://www.ensemblgenomes.org/id/AT1G52330.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": 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"Q5BPW9", "url": "https://www.uniprot.org/uniprotkb/Q5BPW9" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q5BPW9", "url": "https://www.uniprot.org/uniprotkb/Q5BPW9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G52330", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G52330", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response to other organism", "id": "GO:0098542", 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"https://www.uniprot.org/uniprotkb/Q9C745-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C746", "url": "https://www.uniprot.org/uniprotkb/Q9C746", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C746-1", "url": "https://www.uniprot.org/uniprotkb/Q9C746-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MICTEALQRISFSSDLGQSDKAPPPVIEPSGLIRRDETLLDSSNSDFEFHISNSFDPGDSSPADEIFADGMILPFHVTAASTVPKRLYKYELPPITSSLSPSPLSPQPLPTKHSEKETNGRASGANSDSEAEKSSKSFWSFKRSSSLNCDIKKSLICSFPRLTRSNSTGSVTNSKRAMLRDVNNHRPSSRSSCCNAYQFRPQKHTGKKGEGGGSFSVIPVLNGPSTFGLGSILRHSNSKDKTKTKKKKNKK", "length": 251, "header": "tr|Q9C746-1|Q9C746_ARATH Isoform 1 of Membrane-associated kinase regulator OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C746-1" }, "isoforms": [ { "isoform_ac": "Q5BPX7-1", "url": "https://www.uniprot.org/uniprotkb/Q5BPX7/entry", "sequence": { "sequence": "MILPFHVTAASTVPKRLYKYELPPITSSLSPSPLSPQPLPTKHSEKETNGRASGANSDSEAEKSSKSFWSFKRSSSLNCDIKKSLICSFPRLTRSNSTGSVTNSKRAMLRDVNNHRPSSRSSCCNAYQFRPQKHTGKKGEGGGSFSVIPVLNGPSTFGLGSILRHSNSKDKTKTKKKKNKK", "length": 181, "header": "tr|Q5BPX7-1|Q9C746_ARATH Computationally mapped isoform of Membrane-associated kinase regulator OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C746-1" }, "locus": { "chromosome": "1", "start_pos": 18041380, "end_pos": 18042886, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G48780.2", "url": "https://www.ensemblgenomes.org/id/AT1G48780.2" }, { "database": "Ensembl Peptide", "id": "AT1G48780.2", "url": "https://www.ensemblgenomes.org/id/AT1G48780.2" } ] } }, { "isoform_ac": "Q9C745-1", "url": "https://www.uniprot.org/uniprotkb/Q9C745/entry", "sequence": { "sequence": "MEPPFERSKRLHNFSLPQLRWGQQRFLRCVNLPSPPPSSSSPDHAATNRSVSIAGVSLTRGGGGGAKNGEVVAAAKPWNLRMRRAACSEPGEEIEIGVNKRRSIIDNEDGGGDKKNEKSKFSIALSRDEIEQDFSFVFGKKPPKRPKKRPRLVQKKLNTIFPGLWLNEEEVTIDSYNGA", "length": 179, "header": "tr|Q9C745-1|Q9C745_ARATH Computationally mapped isoform of DUF1639 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C746-1" }, "locus": { "chromosome": "1", "start_pos": 18040129, "end_pos": 18041447, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G48770.3", "url": "https://www.ensemblgenomes.org/id/AT1G48770.3" }, { "database": "Ensembl Peptide", "id": "AT1G48770.3", "url": "https://www.ensemblgenomes.org/id/AT1G48770.3" } ] } }, { "isoform_ac": "Q9C746-1", "url": "https://www.uniprot.org/uniprotkb/Q9C746/entry", "sequence": { "sequence": "MICTEALQRISFSSDLGQSDKAPPPVIEPSGLIRRDETLLDSSNSDFEFHISNSFDPGDSSPADEIFADGMILPFHVTAASTVPKRLYKYELPPITSSLSPSPLSPQPLPTKHSEKETNGRASGANSDSEAEKSSKSFWSFKRSSSLNCDIKKSLICSFPRLTRSNSTGSVTNSKRAMLRDVNNHRPSSRSSCCNAYQFRPQKHTGKKGEGGGSFSVIPVLNGPSTFGLGSILRHSNSKDKTKTKKKKNKK", "length": 251, "header": "tr|Q9C746-1|Q9C746_ARATH Isoform 1 of Membrane-associated kinase regulator OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C746-1" }, "locus": { "chromosome": "1", "start_pos": 18041448, "end_pos": 18042744, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G48780.1", "url": "https://www.ensemblgenomes.org/id/AT1G48780.1" }, { "database": "Ensembl Peptide", "id": "AT1G48780.1", "url": "https://www.ensemblgenomes.org/id/AT1G48780.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 42, "end_pos": 42, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C745", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C745" } ], "site_lbl": "Ser42" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q5BPX7", "url": "https://www.uniprot.org/uniprotkb/Q5BPX7" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q5BPX7", "url": "https://www.uniprot.org/uniprotkb/Q5BPX7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G48770", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G48770", "resource": "KEGG Pathway" }, { "id": "ath:AT1G48780", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G48780", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9C746", "url": "https://www.uniprot.org/uniprotkb/Q9C746" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 42 ], "sequon_annotation_sites": [ { "start_pos": 166, "end_pos": 168 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FLL7-1", "uniprot_ac": "Q9FLL7", "uniprot_id": "Q9FLL7_ARATH", "mass": { "chemical_mass": 77850.0, "monoisotopic_mass": 77850.0 }, "refseq": { "ac": "NP_001331275", "name": "Esterase/lipase/thioesterase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001331275" }, "gene_names": [ { "name": "ELT4", "type": "recommended", "evidence": [ { "id": "Q9FLL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLL7" } ] }, { "name": "MEE6.19", "type": "synonym", "evidence": [ { "id": "NP_001331275", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001331275" }, { "id": "Q9FLL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLL7" } ] }, { "name": "MEE6_19", "type": "synonym", "evidence": [ { "id": "NP_001331275", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001331275" }, { "id": "Q9FLL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLL7" } ] } ], "protein_names": [ { "name": "Esterase/lipase/thioesterase family protein", "type": "synonym", "evidence": [ { "id": "NP_001331275", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001331275" }, { "id": "Q9FLL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLL7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FLL7", "url": "https://www.uniprot.org/uniprotkb/Q9FLL7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ELT4", "url": "https://www.uniprot.org/uniprotkb/Q9FLL7", "locus": {} } ], "crossref": [ { "id": "AT5G41120", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G41120", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd07987", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07987", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "834114", "url": "https://www.ncbi.nlm.nih.gov/gene/834114", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G41120", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41120", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GYPFSAM", "url": "https://omabrowser.org/oma/group/GYPFSAM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22753", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22753", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22753:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22753:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03982", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03982", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001331275", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001331275", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G41120", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G41120", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BDF4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BDF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDF4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLL7", "url": "https://www.uniprot.org/uniprotkb/Q9FLL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLL7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIITTTTVRFTDGTSPTFFSSASTKAYNLHFLYSNSTQRLTNPKFGIGGKLKVTVNPYSYTEEVRPEERKSLTDFLTEAGDFVNSDGGDGGPPRWFSPLECGARAPESPLLLYLPGIDGTGLGLIRQHKRLGEIFDIWCLHFPVKDRTPARDIGKLIEKTVRSEHYRFPNRPIYIVGESIGASLALDVAASNPDIDLVLILANPVTRFTNLMLQPVLALLEILPDGVPGLITENFGFYQASPLTEMFETMLNENDAAQMGRGLLGDFFATSSNLPTLIRIFPKDTLLWKLQLLKSASASANSQMDTVNAQTLILLSGRDQWLMNKEDIERLRGALPRCEVRELENNGQFLFLEDGVDLVSIIKRAYYYRRGKSLDYISDYILPTPFEFKEYEESQRLLTAVTSPVFLSTLKNGAVVRSLAGIPSEGPVLYVGNHMLLGMELHAIALHFLKERNILLRGLAHPLMFTKKTGSKLPDMQLYDLFRIIGAVPVSGMNFYKLLRSKAHVALYPGGVREALHRKGEEYKLFWPEHSEFVRIASKFGAKIIPFGVVGEDDLCEMVLDYDDQMKIPFLKNLIEEITQDSVNLRNDEEGELGKQDLHLPGIVPKIPGRFYAYFGKPIDTEGREKELNNKEKAHEVYLQVKSEVERCMNYLKIKRETDPYRNILPRSLYYLTHGFSSQIPTFDLRNH", "length": 689, "header": "tr|Q9FLL7-1|Q9FLL7_ARATH Isoform 1 of Esterase/lipase/thioesterase family protein OS=Arabidopsis thaliana OX=3702 GN=ELT4 PE=1 SV=1 CANONICAL=Q9FLL7-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BDF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDF4/entry", "sequence": { "sequence": "MVVRHGGSHRWNVAHVLLNLLFFSTYLFFKISGIDGTGLGLIRQHKRLGEIFDIWCLHFPVKDRTPARDIGKLIEKTVRSEHYRFPNRPIYIVGESIGASLALDVAASNPDIDLVLILANPVTRFTNLMLQPVLALLEILPDGVPGLITENFGFYQASPLTEMFETMLNENDAAQMGRGLLGDFFATSSNLPTLIRIFPKDTLLWKLQLLKSASASANSQMDTVNAQTLILLSGRDQWLMNKEDIERLRGALPRCEVRELENNGQFLFLEDGVDLVSIIKRAYYYRRGKSLDYISDYILPTPFEFKEYEESQRLLTAVTSPVFLSTLKNGAVVRSLAGIPSEGPVLYVGNHMLLGMELHAIALHFLKERNILLRGLAHPLMFTKKTGSKLPDMQLYDLFRIIGAVPVSGMNFYKLLRSKAHVALYPGGVREALHRKGEEYKLFWPEHSEFVRIASKFGAKIIPFGVVGEDDLCEMVLDYDDQMKIPFLKNLIEEITQDSVNLRNDEEGELGKQDLHLPGIVPKIPGRFYAYFGKPIDTEGREKELNNKEKAHEVYLQVKSEVERCMNYLKIKRETDPYRNILPRSLYYLTHGFSSQIPTFDLRNH", "length": 605, "header": "tr|A0A1P8BDF4-1|Q9FLL7_ARATH Computationally mapped isoform of Esterase/lipase/thioesterase family protein OS=Arabidopsis thaliana OX=3702 GN=ELT4 PE=1 SV=1 CANONICAL=Q9FLL7-1" }, "locus": { "chromosome": "5", "start_pos": 16455094, "end_pos": 16459253, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G41120.2", "url": "https://www.ensemblgenomes.org/id/AT5G41120.2" }, { "database": "Ensembl Peptide", "id": "AT5G41120.2", "url": "https://www.ensemblgenomes.org/id/AT5G41120.2" } ] } }, { "isoform_ac": "Q9FLL7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLL7/entry", "sequence": { "sequence": "MAIITTTTVRFTDGTSPTFFSSASTKAYNLHFLYSNSTQRLTNPKFGIGGKLKVTVNPYSYTEEVRPEERKSLTDFLTEAGDFVNSDGGDGGPPRWFSPLECGARAPESPLLLYLPGIDGTGLGLIRQHKRLGEIFDIWCLHFPVKDRTPARDIGKLIEKTVRSEHYRFPNRPIYIVGESIGASLALDVAASNPDIDLVLILANPVTRFTNLMLQPVLALLEILPDGVPGLITENFGFYQASPLTEMFETMLNENDAAQMGRGLLGDFFATSSNLPTLIRIFPKDTLLWKLQLLKSASASANSQMDTVNAQTLILLSGRDQWLMNKEDIERLRGALPRCEVRELENNGQFLFLEDGVDLVSIIKRAYYYRRGKSLDYISDYILPTPFEFKEYEESQRLLTAVTSPVFLSTLKNGAVVRSLAGIPSEGPVLYVGNHMLLGMELHAIALHFLKERNILLRGLAHPLMFTKKTGSKLPDMQLYDLFRIIGAVPVSGMNFYKLLRSKAHVALYPGGVREALHRKGEEYKLFWPEHSEFVRIASKFGAKIIPFGVVGEDDLCEMVLDYDDQMKIPFLKNLIEEITQDSVNLRNDEEGELGKQDLHLPGIVPKIPGRFYAYFGKPIDTEGREKELNNKEKAHEVYLQVKSEVERCMNYLKIKRETDPYRNILPRSLYYLTHGFSSQIPTFDLRNH", "length": 689, "header": "tr|Q9FLL7-1|Q9FLL7_ARATH Isoform 1 of Esterase/lipase/thioesterase family protein OS=Arabidopsis thaliana OX=3702 GN=ELT4 PE=1 SV=1 CANONICAL=Q9FLL7-1" }, "locus": { "chromosome": "5", "start_pos": 16455094, "end_pos": 16459253, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G41120.3", "url": "https://www.ensemblgenomes.org/id/AT5G41120.3" }, { "database": "Ensembl Peptide", "id": "AT5G41120.3", "url": "https://www.ensemblgenomes.org/id/AT5G41120.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 385, "start_aa": "Thr", "end_pos": 385, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr385", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BDF4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDF4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BDF4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDF4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G41120", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41120", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "triglyceride biosynthetic process", "id": "GO:0019432", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019432", "evidence": [ { "database": "UniProtKB", "id": "Q9FLL7", "url": "https://www.uniprot.org/uniprotkb/Q9FLL7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "diacylglycerol O-acyltransferase activity", "id": "GO:0004144", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004144", "evidence": [ { "database": "UniProtKB", "id": "Q9FLL7", "url": "https://www.uniprot.org/uniprotkb/Q9FLL7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "Q9FLL7", "url": "https://www.uniprot.org/uniprotkb/Q9FLL7" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9FLL7", "url": "https://www.uniprot.org/uniprotkb/Q9FLL7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 36, "end_pos": 38, "annotation": 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"url": "https://www.ncbi.nlm.nih.gov/protein/NP_199998" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FLH6", "url": "https://www.uniprot.org/uniprotkb/Q9FLH6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "TRM24", "url": "https://www.uniprot.org/uniprotkb/Q9FLH6", "locus": { "chromosome": "CP002688.1", "start_pos": 21081632, "end_pos": 21079106, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "AT5G51850", "url": "https://www.ensemblgenomes.org/id/AT5G51850" } ] } } ], "crossref": [ { "id": "AT5G51850", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G51850", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835260", "url": "https://www.ncbi.nlm.nih.gov/gene/835260", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025486", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025486", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G51850", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G51850", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TANGCMA", "url": "https://omabrowser.org/oma/group/TANGCMA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8BGA2", "url": "https://www.orthodb.org/?gene=A0A1P8BGA2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FLH6", "url": "https://www.orthodb.org/?gene=Q9FLH6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37751", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37751", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37751:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37751:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14309", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14309", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14383", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14383", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199998", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199998", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G51850", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G51850", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BGA2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGA2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLH6", "url": "https://www.uniprot.org/uniprotkb/Q9FLH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLH6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLH6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRDCGMFDDGHGSEGGGRGGAFSSSRSKKTANGCMAAFYHLFDSHHHLTIDSPSRSKGLKLMEESLPSTTYKDKEISNIPVGMRVKTDTGTKSSRLRALVTDSSTSSSEICNSPGSKTPNLVARLMGLDLLPDKTDLNHSLSDLHTMSSHHITSHRLSKKGTRSLPVSPRISSARKSDFDIHRLSLQLNREKEFGRSRLKEDQEESHSPRDYARQIVKQIKERVVTRRVVGMDITNSVKNREARPSHELRRDTTVSCSPRTRFSEKENKQSTSHKPNSSSSSRPEPIIQKPKPTPVILGEKQSQNRVKQRQLKPINLCKKAETETRRPIKPSPTSDIRNRKRETFLSDSRDVKAKPLHKIKKFKKIPKSNDLENISATRPPHQQINERERLISNEAASIRSSSMHKTEKNSPQVARNHKFDDAATEINSEQDYIIRIMNLAGIKSDSQAMLDLSIFRKLEHFGDYPSGTLALGCNRRLLFDLVNEILIETVAKRRGNYQGSELISELCSAVARYSTKCYPVPEEIALVDVKRLLEKKKKLEEEGEEIIVEIEREIIDALVRETLSELSLNKRSNKTTSDGKLNHYVLLE", "length": 590, "header": "tr|Q9FLH6-1|Q9FLH6_ARATH Isoform 1 of DUF3741 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM24 PE=4 SV=1 CANONICAL=Q9FLH6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BGA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGA2/entry", "sequence": { "sequence": "MEESLPSTTYKDKEISNIPVGMRVKTDTGTKSSRLRALVTDSSTSSSEICNSPGSKTPNLVARLMGLDLLPDKTDLNHSLSDLHTMSSHHITSHRLSKKGTRSLPVSPRISSARKSDFDIHRLSLQLNREKEFGRSRLKEDQEESHSPRDYARQIVKQIKERVVTRRVVGMDITNSVKNREARPSHELRRDTTVSCSPRTRFSEKENKQSTSHKPNSSSSSRPEPIIQKPKPTPVILGEKQSQNRVKQRQLKPINLCKKAETETRRPIKPSPTSDIRNRKRETFLSDSRDVKAKPLHKIKKFKKIPKSNDLENISATRPPHQQINERERLISNEAASIRSSSMHKTEKNSPQVARNHKFDDAATEINSEQDYIIRIMNLAGIKSDSQAMLDLSIFRKLEHFGDYPSGTLALGCNRRLLFDLVNEILIETVAKRRGNYQGSELISELCSAVARYSTKCYPVPEEIALVDVKRLLEKKKKLEEEGEEIIVEIEREIIDALVRETLSELSLNKRSNKTTSDGKLNHYVLLE", "length": 528, "header": "tr|A0A1P8BGA2-1|Q9FLH6_ARATH Computationally mapped isoform of DUF3741 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM24 PE=4 SV=1 CANONICAL=Q9FLH6-1" }, "locus": { "chromosome": "5", "start_pos": 21079124, "end_pos": 21081578, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G51850.2", "url": "https://www.ensemblgenomes.org/id/AT5G51850.2" }, { "database": "Ensembl Peptide", "id": "AT5G51850.2", "url": "https://www.ensemblgenomes.org/id/AT5G51850.2" } ] } }, { "isoform_ac": "Q9FLH6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLH6/entry", "sequence": { "sequence": "MGRDCGMFDDGHGSEGGGRGGAFSSSRSKKTANGCMAAFYHLFDSHHHLTIDSPSRSKGLKLMEESLPSTTYKDKEISNIPVGMRVKTDTGTKSSRLRALVTDSSTSSSEICNSPGSKTPNLVARLMGLDLLPDKTDLNHSLSDLHTMSSHHITSHRLSKKGTRSLPVSPRISSARKSDFDIHRLSLQLNREKEFGRSRLKEDQEESHSPRDYARQIVKQIKERVVTRRVVGMDITNSVKNREARPSHELRRDTTVSCSPRTRFSEKENKQSTSHKPNSSSSSRPEPIIQKPKPTPVILGEKQSQNRVKQRQLKPINLCKKAETETRRPIKPSPTSDIRNRKRETFLSDSRDVKAKPLHKIKKFKKIPKSNDLENISATRPPHQQINERERLISNEAASIRSSSMHKTEKNSPQVARNHKFDDAATEINSEQDYIIRIMNLAGIKSDSQAMLDLSIFRKLEHFGDYPSGTLALGCNRRLLFDLVNEILIETVAKRRGNYQGSELISELCSAVARYSTKCYPVPEEIALVDVKRLLEKKKKLEEEGEEIIVEIEREIIDALVRETLSELSLNKRSNKTTSDGKLNHYVLLE", "length": 590, "header": "tr|Q9FLH6-1|Q9FLH6_ARATH Isoform 1 of DUF3741 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM24 PE=4 SV=1 CANONICAL=Q9FLH6-1" }, "locus": { "chromosome": "5", "start_pos": 21079106, "end_pos": 21081632, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G51850.1", "url": "https://www.ensemblgenomes.org/id/AT5G51850.1" }, { "database": "Ensembl Peptide", "id": "AT5G51850.1", "url": "https://www.ensemblgenomes.org/id/AT5G51850.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 295, "start_aa": "Thr", "end_pos": 295, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr295", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [ { "start_pos": 69, "end_pos": 69, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLH6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLH6" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser69" }, { "start_pos": 70, "end_pos": 70, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLH6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLH6" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Thr70" }, { "start_pos": 71, "end_pos": 71, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLH6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLH6" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Thr71" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGA2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGA2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9FLH6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLH6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGA2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGA2" } ], "reference": [ { "type": 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"InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G11590", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G11590", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GDEMQGY", "url": "https://omabrowser.org/oma/group/GDEMQGY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31071", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31071", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31071:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31071:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_566392", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_566392", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G11590", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G11590", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LSS1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LSS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSS1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CAW9", "url": "https://www.uniprot.org/uniprotkb/Q9CAW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CAW9-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRQNQSVENLLLLGKIRKRGCSSPTSSTSSILREGYRFKRAIVVGKRGGSTTPVPTWRLMGRSPSPRASGALHAAASPSSHCGSKTGKVSAPAPVSARKLAATLWEMNEMPSPRVVEEAAPMIRKSRKERIAPLPPPRSSVHSGSLPPHLSDPSHSPVSERMERSGTGSRQRRASSTVQKLRLGDCNVGARDPINSGSFMDIETRSRVETPTGSTVGVKTRLKDCSNALTTSKELLKIINRMWGQDDRPSSSMSLVSALHSELERARLQVNQLIHEHKPENNDISYLMKRFAEEKAVWKSNEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGKELAETKSALMKAVKEIENEKRARVMVEKVCDELARDISEDKAEVEELKRESFKVKEEVEKEREMLQLADALREERVQMKLSEAKHQLEEKNAAVDKLRNQLQTYLKAKRCKEKTREPPQTQLHNEEAGDYLNHHISFGSYNIEDGEVENGNEEGSGESDLHSIELNIDNKSYKWPYGEENRGRKSTPRKSLSLQRSISDCVDWVVQSEKLQKSGDGGLDWGRSIDVEPKGYIDETQAYKPNKASSKDHHILSGSRLSNFRGGSVSKSRLSDASKGENQNARKSRW", "length": 622, "header": "tr|Q9CAW9-1|Q9CAW9_ARATH Isoform 1 of Golgin family A protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAW9-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LSS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSS1/entry", "sequence": { "sequence": "MERSGTGSRQRRASSTVQKLRLGDCNVGARDPINSGSFMDIETRSRVETPTGSTVGVKTRLKDCSNALTTSKELLKIINRMWGQDDRPSSSMSLVSALHSELERARLQVNQLIHEHKPENNDISYLMKRFAEEKAVWKSNEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGKELAETKSALMKAVKEIENEKRARVMVEKVCDELARDISEDKAEVEELKRESFKVKEEVEKEREMLQLADALREERVQMKLSEAKHQLEEKNAAVDKLRNQLQTYLKAKRCKEKTREPPQTQLHNEEAGDYLNHHISFGSYNIEDGEVENGNEEGSGESDLHSIELNIDNKSYKWPYGEENRGRKSTPRKSLSLQRSISDCVDWVVQSEKLQKSGDGGLDWGRSIDVEPKGYIDETQAYKPNKASSKDHHILSGSRLSNFRGGSVSKSRLSDASKGENQNARKSRW", "length": 460, "header": "tr|A0A1I9LSS1-1|Q9CAW9_ARATH Computationally mapped isoform of Golgin family A protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAW9-1" }, "locus": { "chromosome": "3", "start_pos": 3661164, "end_pos": 3663537, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G11590.2", "url": "https://www.ensemblgenomes.org/id/AT3G11590.2" }, { "database": "Ensembl Peptide", "id": "AT3G11590.2", "url": "https://www.ensemblgenomes.org/id/AT3G11590.2" } ] } }, { "isoform_ac": "Q9CAW9-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAW9/entry", "sequence": { "sequence": "MPRQNQSVENLLLLGKIRKRGCSSPTSSTSSILREGYRFKRAIVVGKRGGSTTPVPTWRLMGRSPSPRASGALHAAASPSSHCGSKTGKVSAPAPVSARKLAATLWEMNEMPSPRVVEEAAPMIRKSRKERIAPLPPPRSSVHSGSLPPHLSDPSHSPVSERMERSGTGSRQRRASSTVQKLRLGDCNVGARDPINSGSFMDIETRSRVETPTGSTVGVKTRLKDCSNALTTSKELLKIINRMWGQDDRPSSSMSLVSALHSELERARLQVNQLIHEHKPENNDISYLMKRFAEEKAVWKSNEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGKELAETKSALMKAVKEIENEKRARVMVEKVCDELARDISEDKAEVEELKRESFKVKEEVEKEREMLQLADALREERVQMKLSEAKHQLEEKNAAVDKLRNQLQTYLKAKRCKEKTREPPQTQLHNEEAGDYLNHHISFGSYNIEDGEVENGNEEGSGESDLHSIELNIDNKSYKWPYGEENRGRKSTPRKSLSLQRSISDCVDWVVQSEKLQKSGDGGLDWGRSIDVEPKGYIDETQAYKPNKASSKDHHILSGSRLSNFRGGSVSKSRLSDASKGENQNARKSRW", "length": 622, "header": "tr|Q9CAW9-1|Q9CAW9_ARATH Isoform 1 of Golgin family A protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAW9-1" }, "locus": { "chromosome": "3", "start_pos": 3660298, "end_pos": 3663734, "strand": "+", "evidence": [ { "database": 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"AT1G77700.3", "url": "https://www.ensemblgenomes.org/id/AT1G77700.3" } ] } }, { "isoform_ac": "A0A1P8AMN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AMN6/entry", "sequence": { "sequence": "MQVILSSSLKKPVSLQDQKITLHLILKYFLVKMPIRFGLSPRILLLFLTILSGTKWSESARVFTIINSCDQTIWPAITPGENFNGGGFELKPGQSIVFHAPVGWSGRIWGRTGCKFDSTGTGTCETGSCGSTLKCSASGKPPASLAEFTLAALDFYDVSLVDGFNLPMSVTPMNGKGNCSVAGCVADLRPHCPQELAVKSNGKVISCRSACDVFDRDEYCCRGVYGNPVVCQPTYYSKIFKQACPTAYSYAYDDPTSIMTCTASDYVISFCSSRKKPVCTYHDNKLVCSDGSGGFKKMIGRLLWLVLMLSLVVFS", "length": 315, "header": "tr|A0A1P8AMN6-1|Q9CA24_ARATH Computationally mapped isoform of Pathogenesis-related thaumatin superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CA24-1" }, "locus": { "chromosome": "1", "start_pos": 29205047, "end_pos": 29206511, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G77700.2", "url": "https://www.ensemblgenomes.org/id/AT1G77700.2" }, { "database": "Ensembl Peptide", "id": "AT1G77700.2", "url": "https://www.ensemblgenomes.org/id/AT1G77700.2" } ] } }, { "isoform_ac": "Q9CA24-1", "url": "https://www.uniprot.org/uniprotkb/Q9CA24/entry", "sequence": { "sequence": "MDRTIEIEFDINGPYDSLIRPNISVASLTSRSENNITFDPKIFSSKDANSFRFVTKDLVTLSHHIIRVWITIRTPVNYSTGTKWSESARVFTIINSCDQTIWPAITPGENFNGGGFELKPGQSIVFHAPVGWSGRIWGRTGCKFDSTGTGTCETGSCGSTLKCSASGKPPASLAEFTLAALDFYDVSLVDGFNLPMSVTPMNGKGNCSVAGCVADLRPHCPQELAVKSNGKVISCRSACDVFDRDEYCCRGVYGNPVVCQPTYYSKIFKQACPTAYSYAYDDPTSIMTCTASDYVISFCSSRFVLFTFLTTSHDYFNYDSNQVSFILDHDFYIYMIYFIHPLLISYAKVKVIQMQK", "length": 356, "header": "tr|Q9CA24-1|Q9CA24_ARATH Isoform 1 of Pathogenesis-related thaumatin superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CA24-1" }, "locus": { "chromosome": "1", "start_pos": 29204747, "end_pos": 29206376, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G77700.1", "url": "https://www.ensemblgenomes.org/id/AT1G77700.1" }, { "database": "Ensembl Peptide", "id": "AT1G77700.1", "url": "https://www.ensemblgenomes.org/id/AT1G77700.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 106, "start_aa": "Thr", "end_pos": 106, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr106", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AMN5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AMN5" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AMN5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AMN5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G77700", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G77700", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9CA24", "url": "https://www.uniprot.org/uniprotkb/Q9CA24" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q9CA24", "url": "https://www.uniprot.org/uniprotkb/Q9CA24" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" }, { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 106 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 206, "end_pos": 208 }, { "start_pos": 22, "end_pos": 24 }, { "start_pos": 35, "end_pos": 37 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C7J8-1", "uniprot_ac": "Q9C7J8", "uniprot_id": "Q9C7J8_ARATH", "mass": { "chemical_mass": 86021.0, "monoisotopic_mass": 86021.0 }, "refseq": {}, "gene_names": [ { "name": "F14G9.16", "type": "synonym", "evidence": [ { "id": "Q9C7J8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C7J8" } ] }, { "name": "F14G9_16", "type": "synonym", "evidence": [ { "id": "Q9C7J8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C7J8" } ] } ], "protein_names": [ { "name": "Enolase (DUF1399)", "type": "synonym", "evidence": [ { "id": "Q9C7J8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C7J8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C7J8", "url": "https://www.uniprot.org/uniprotkb/Q9C7J8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C7J8", "locus": {} } ], "crossref": [ { "id": "AT1G56230", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G56230", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "842076", "url": "https://www.ncbi.nlm.nih.gov/gene/842076", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009836", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009836", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057518", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057518", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G56230", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G56230", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WYRNAAH", "url": "https://omabrowser.org/oma/group/WYRNAAH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8AMT7", "url": "https://www.orthodb.org/?gene=A0A1P8AMT7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8AMU5", "url": "https://www.orthodb.org/?gene=A0A1P8AMU5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4I3L9", "url": "https://www.orthodb.org/?gene=F4I3L9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9C7J8", "url": "https://www.orthodb.org/?gene=Q9C7J8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34365", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34365", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34365:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34365:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07173", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07173", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25335", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25335", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G56230", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G56230", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AMT7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AMT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AMT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AMT7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AMU5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AMU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AMU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AMU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I3L9", "url": "https://www.uniprot.org/uniprotkb/F4I3L9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I3L9-1", "url": "https://www.uniprot.org/uniprotkb/F4I3L9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C7J8", "url": "https://www.uniprot.org/uniprotkb/Q9C7J8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C7J8-1", "url": "https://www.uniprot.org/uniprotkb/Q9C7J8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser21" }, { "start_pos": 535, "end_pos": 535, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C7J8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7J8" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser535" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AMT7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AMT7" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry.", "journal": "Mol. Cell. Proteomics", "date": "2003", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AMT7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AMT7" } ], "reference": [ { "type": "PubMed", "id": "14506206", "url": "https://glygen.org/publication/PubMed/14506206" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AMT7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AMT7" }, { "database": "iPTMnet", "id": "Q9C7J8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7J8" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9C7J8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7J8" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9C7J8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7J8" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9C7J8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7J8" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9C7J8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7J8" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9C7J8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7J8" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9C7J8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7J8" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9C7J8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7J8" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9C7J8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7J8" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli 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CANONICAL=Q9C9L6-1" }, "locus": { "chromosome": "1", "start_pos": 24840899, "end_pos": 24842609, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G66590.1", "url": "https://www.ensemblgenomes.org/id/AT1G66590.1" }, { "database": "Ensembl Peptide", "id": "AT1G66590.1", "url": "https://www.ensemblgenomes.org/id/AT1G66590.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ANA0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANA0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, 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Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=TRM12 PE=1 SV=1 CANONICAL=Q9CAD2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8ANH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANH4/entry", "sequence": { "sequence": "MEKKRSPRSSKSPGPAIFPKSPLVYESYKSGCGWKLIKFFDFGHVKSGNKRLGSEKKKFVRDSAGNVYTKSQLDLLKKLHEKCQCNDRIVEEERSCKPKTRRRSLSSDRELEKYESKPVQGLLEREIRRIKNLKDETCDVPDKQKQSSLSEIENDSDKQMDMKNGRDCKKSSEINLQACVNEAAETFICSKAEEKGKDRSKQFMEALDILSSNKELFITLLQDPHSFSAKKSLDLEGSKVKEPRDKSPSMADDLDSIVLLKPRLSSSVDDKVYLRFKHLAKKLKLVVGSNKDSNHAENKPEGSSRGREIEAAAFRTSDVSTSTVGHRSPESPVFRRKKRVESDVFKLSIENDVLPRRFMVERQQERLNSSPVYEVPYALSSLQTKLKERRQKLEKKRESFKLWSLDKNFEVFDPNPYNSNLRFLENNCTGSSEYKSLRTHVEDGFVEDRYLESSLAETNLSLERQDCNIHDPKQEQEQPSPVSVLERIHLEDETVIPGNVKISNLGKSP", "length": 509, "header": "tr|A0A1P8ANH4-1|Q9CAD2_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=TRM12 PE=1 SV=1 CANONICAL=Q9CAD2-1" }, "locus": { "chromosome": "1", "start_pos": 23608090, "end_pos": 23610653, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63670.5", "url": "https://www.ensemblgenomes.org/id/AT1G63670.5" }, { "database": "Ensembl Peptide", "id": "AT1G63670.5", "url": "https://www.ensemblgenomes.org/id/AT1G63670.5" } ] } }, { "isoform_ac": "Q9CAD2-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAD2/entry", "sequence": { "sequence": "MEKKRSPRSSKSPGPAIFPKSPLVYESYKSGCGWKLIKFFDFGHVKSGNKRLGSEKKKFVRDSAGNVYTKSQLDLLKKLHEKCQCNDRIVEEERSCKPKTRRRSLSSDRELEKYESKPVQGLLEREIRRIKNLKDETCDVPDKQKQSSLSEIENDSDKQMDMKNGRDCKKSSEINLQACVNEAAETFICSKAEEKGKDRSKQFMEALDILSSNKELFITLLQDPHSFSAKKSLDLEGSKVKEPRDKSPSMADDLDSIVLLKPRLSSSVDDKVYLRFKHLAKKLKLVVGSNKDSNHAENKPEGSSRGREIEAAAFRTSDVSTSTVGHRSPESPVFRRKKRVESDVFKLSIENDVLPRRFMVERQQERLNSSPVYEVPYALSSLQTKLKERRQKLEKKRESFKLWSLDKNFEVFDPNPYNSNLRFLENNCTGSSEYKSLRTHVEDGFVEDRYLESSLAETNLSLERQDCNIHDPKQEQEQPSPVSVLERIHLEDETVIPGNVKISNLEEKIGLSFDDPNIDLIEKESVHEFVKKVLEASRLNWTNLMARCNEDTSLLDEFSHGSHNDQLLLVLDYTDEILREIYRQDIKFWPFSPSKSSRVLNLESSLREDDLIHETMRHFDWSLLCSDSPTRSLDQIIETDLIKPCLWLDFGGESEGVVSDIVEKIQQQLVLEISHELRTMQRSILCRLI", "length": 689, "header": "tr|Q9CAD2-1|Q9CAD2_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=TRM12 PE=1 SV=1 CANONICAL=Q9CAD2-1" }, "locus": { "chromosome": "1", "start_pos": 23607377, "end_pos": 23610779, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63670.2", "url": "https://www.ensemblgenomes.org/id/AT1G63670.2" }, { "database": "Ensembl Peptide", "id": "AT1G63670.2", "url": "https://www.ensemblgenomes.org/id/AT1G63670.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ANH4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANH4" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ANH4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANH4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G63670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G63670", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9CAD2", "url": "https://www.uniprot.org/uniprotkb/Q9CAD2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 368, "end_pos": 370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 427, "end_pos": 429, "annotation": "n_glycosylation_sequon" }, { "start_pos": 459, "end_pos": 461, "annotation": "n_glycosylation_sequon" }, { "start_pos": 540, "end_pos": 542, "annotation": 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"start_aa": "His", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 154, "end_pos": 156 }, { "start_pos": 368, "end_pos": 370 }, { "start_pos": 427, "end_pos": 429 }, { "start_pos": 459, "end_pos": 461 }, { "start_pos": 540, "end_pos": 542 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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"sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G73770", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "843712", "url": "https://www.ncbi.nlm.nih.gov/gene/843712", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT1G73770", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G73770", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KYPINDS", "url": "https://omabrowser.org/oma/group/KYPINDS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8ANI4", "url": "https://www.orthodb.org/?gene=A0A1P8ANI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9C9T5", "url": "https://www.orthodb.org/?gene=Q9C9T5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "AT1G73770", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G73770", "database": "TAIR", "categories": [ 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"MRRFLQRVPSLLARNILHSPANFRHLRINNPRVVVPLFERAISRFVFFSSESDSSRGFRTEEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEVMDVVRKYPVNDAHKVDDIDSDIESDGHGDSSDSDIESDDLRDGDSSDSDVEFDGFNDVGLSDVNIKTDALKANRSSYSYSESD", "length": 191, "header": "tr|Q9C9T5-1|Q9C9T5_ARATH Isoform 1 of Coiled-coil protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C9T5-1" }, "locus": { "chromosome": "1", "start_pos": 27742081, "end_pos": 27743565, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G73770.2", "url": "https://www.ensemblgenomes.org/id/AT1G73770.2" }, { "database": "Ensembl Peptide", "id": "AT1G73770.2", "url": "https://www.ensemblgenomes.org/id/AT1G73770.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 104, "end_pos": 104, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C9T5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C9T5" }, { "database": 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"MAKPNIDELNQILTSYQNTINDTLQLFEQVPSPTQDKLYWNDVLQISDHLSKQATIVGMLWITGEPPKAEAMKETMEAYFNALQGFLLHCHGSMVGAGTTLSSTIHASVKQIVDSSFRLLQGSVSLYEGSYEKGRKPTIPQLAGAVWEACSNLKNVPETNIKAIGRAMAHVAVSMKDVLREMKELKPASSSPDHNVSTNSDDDDLGDELSPEEFEVAKMVADIVSETLVVIKELIRAITCMIKLENPKDNSEFVDSFEKLLKLCQGIGVQIDELGACVYPPQEFGLMKQTVENMRESIGEIESDVKSSKNSSSEALSGSCRRLQSLIEHMVTELDTRIEAEVVYKMQNVTL", "length": 351, "header": "tr|Q9C993-1|Q9C993_ARATH Isoform 1 of Cyclin-D1-binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C993-1" }, "locus": { "chromosome": "1", "start_pos": 26827146, "end_pos": 26828674, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G71150.1", "url": "https://www.ensemblgenomes.org/id/AT1G71150.1" }, { "database": "Ensembl Peptide", "id": "AT1G71150.1", "url": "https://www.ensemblgenomes.org/id/AT1G71150.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ANU0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANU0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ANU0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANU0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G71150", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G71150", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9C993", "url": "https://www.uniprot.org/uniprotkb/Q9C993" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9C993", "url": "https://www.uniprot.org/uniprotkb/Q9C993" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 21, "end_pos": 23, "annotation": "n_glycosylation_sequon" }, { "start_pos": 310, "end_pos": 312, "annotation": "n_glycosylation_sequon" }, { "start_pos": 348, "end_pos": 350, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9C993", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C993" }, { "id": "PF20936", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20936" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cyclin-D1-binding protein 1-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 202, "end_pos": 302, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "Q9C993", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C993" }, { "id": "PF13324", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13324" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cyclin-D1-binding protein 1-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 187, "start_aa": "Asp", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 195, "end_pos": 197 }, { "start_pos": 21, "end_pos": 23 }, { "start_pos": 310, "end_pos": 312 }, { "start_pos": 348, "end_pos": 350 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9CAC8-1", "uniprot_ac": "Q9CAC8", "uniprot_id": "Q9CAC8_ARATH", "mass": { "chemical_mass": 37955.0, "monoisotopic_mass": 37955.0 }, "refseq": { "ac": "NP_176549", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176549" }, "gene_names": [ { "name": "F2K11.3", "type": "synonym", "evidence": [ { "id": "NP_176549", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176549" }, { "id": "Q9CAC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAC8" } ] }, { "name": "F2K11_3", "type": "synonym", "evidence": [ { "id": "NP_176549", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176549" }, { "id": "Q9CAC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAC8" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "Q9CAC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAC8/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_176549", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176549" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9CAC8", "url": "https://www.uniprot.org/uniprotkb/Q9CAC8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9CAC8", "locus": {} } ], "crossref": [ { "id": "AT1G63610", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G63610", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "842666", "url": "https://www.ncbi.nlm.nih.gov/gene/842666", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G63610", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G63610", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PAQMKTS", "url": "https://omabrowser.org/oma/group/PAQMKTS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33598", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33598", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33598:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33598:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05542", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05542", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_176549", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176549", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G63610", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G63610", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8ANV0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8ANV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANV0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I3N6", "url": "https://www.uniprot.org/uniprotkb/F4I3N6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I3N6-1", "url": "https://www.uniprot.org/uniprotkb/F4I3N6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CAC8", "url": "https://www.uniprot.org/uniprotkb/Q9CAC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CAC8-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAC8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCSLSMQFSLLQSPPSRPCPSFLANHEPKLSTTSSSVTFPLKTNTWKCSGTGNLLVLRVKAYGSSSDSSADSSTPPNGTRQPKSRRDILLEYVQNVKPEFMEMFVKRAPKHVVEAMRQTVTNMIGTLPPQFFAVTVTSVAENLAQLMMSVLMTGYMFRNAQYRLELQQSLEQVALPEPRDQKGGDEDYAPGTQKNVSGEVIRWNNVSGPEKIDAKKYIELLEAEIEELNRQVGRKSANQQNEILEYLKSLEPQNLKELTSTAGEDVAVAMNTFVKRLLAVSDPNQMKTNVTETSAADLAKLLYWLMVVGYSIRNIEVRFDMERVLGTQPKLAELPPGEII", "length": 340, "header": "tr|Q9CAC8-1|Q9CAC8_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAC8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8ANV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANV0/entry", "sequence": { "sequence": "MCSLSMQFSLLQSPPSRPCPSFLANHEPKLSTTSSSVTFPLKTNTWKCSGTGNLLVLRVKAYGSSSDSSADSSTPPNGTRQPKSRRDILLEYVQNVKPEFMEMFVKRAPKHVVEAMRQTVTNMIGTLPPQFFAVTVTSVAENLAQLMMSVLMTGYMFRNAQYRLELQQSLEQVALPEPRDQKPGG", "length": 185, "header": "tr|A0A1P8ANV0-1|Q9CAC8_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAC8-1" }, "locus": { "chromosome": "1", "start_pos": 23583378, "end_pos": 23585723, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63610.3", "url": "https://www.ensemblgenomes.org/id/AT1G63610.3" }, { "database": "Ensembl Peptide", "id": "AT1G63610.3", "url": "https://www.ensemblgenomes.org/id/AT1G63610.3" } ] } }, { "isoform_ac": "F4I3N6-1", "url": "https://www.uniprot.org/uniprotkb/F4I3N6/entry", "sequence": { "sequence": "MCSLSMQFSLLQSPPSRPCPSFLANHEPKLSTTSSSVTFPLKTNTWKCSGTGNLLVLRVKAYGSSSDSSADSSTPPNGTRQPKSRRDILLEYVQNVKPEFMEMFVKRAPKHVVEAMRQTVTNMIGTLPPQFFAVTVTSVAENLAQLMMSVLMTGYMFRNAQYRLELQQSLEQVALPEPRDQKGGDEDYAPGTQKNVSGEVIRWNNVSGPEKIDAKKYIELLEAEIEELNRQVGRKSANQQNEILEYLKSLEPQNLKA", "length": 257, "header": "tr|F4I3N6-1|Q9CAC8_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=Q9CAC8-1" }, "locus": { "chromosome": "1", "start_pos": 23583378, "end_pos": 23585723, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63610.2", "url": "https://www.ensemblgenomes.org/id/AT1G63610.2" }, { "database": "Ensembl Peptide", "id": "AT1G63610.2", "url": "https://www.ensemblgenomes.org/id/AT1G63610.2" } ] } }, { "isoform_ac": "Q9CAC8-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAC8/entry", "sequence": { "sequence": "MCSLSMQFSLLQSPPSRPCPSFLANHEPKLSTTSSSVTFPLKTNTWKCSGTGNLLVLRVKAYGSSSDSSADSSTPPNGTRQPKSRRDILLEYVQNVKPEFMEMFVKRAPKHVVEAMRQTVTNMIGTLPPQFFAVTVTSVAENLAQLMMSVLMTGYMFRNAQYRLELQQSLEQVALPEPRDQKGGDEDYAPGTQKNVSGEVIRWNNVSGPEKIDAKKYIELLEAEIEELNRQVGRKSANQQNEILEYLKSLEPQNLKELTSTAGEDVAVAMNTFVKRLLAVSDPNQMKTNVTETSAADLAKLLYWLMVVGYSIRNIEVRFDMERVLGTQPKLAELPPGEII", "length": 340, "header": "tr|Q9CAC8-1|Q9CAC8_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAC8-1" }, "locus": { "chromosome": "1", "start_pos": 23583196, "end_pos": 23585784, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63610.1", "url": "https://www.ensemblgenomes.org/id/AT1G63610.1" }, { "database": "Ensembl Peptide", "id": "AT1G63610.1", "url": "https://www.ensemblgenomes.org/id/AT1G63610.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ANV0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANV0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ANV0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANV0" } ], 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{ "database": "Ensembl Peptide", "id": "AT1G33420.2", "url": "https://www.ensemblgenomes.org/id/AT1G33420.2" } ] } }, { "isoform_ac": "Q9C810-1", "url": "https://www.uniprot.org/uniprotkb/Q9C810/entry#Q9C810-1", "sequence": { "sequence": "MAVMNGGRATKRARRSNRISADLYDFSTFPTAEINGESTTLPPFRDGVRTFLATHARVTFPPSTLFSSLMTWQIMLRPGDSTDGSDLSSKLVSLDVVEEDVTRSSRSVYCEHCCVVGWSSHPVCRKRYRFIIRSGGDTKACTRCGNTQNLSEGSNCKWCSMALDIENWVYSQLEDNTHLLHGVIHSNGYAHLLCLNGREGGSGFLTGRAIMDFWDRLCSSLAVRKASVMDVSRKYGMDYRLLHGITRGCSWYSEWGYEFKSGSYALTKEAYQSAVDTLSAIPLSEFLFQGRKPRTQLHSIISFYQSLSCSELVTVKDLFSFLLQMIRENSSKPASKSSVLCAWSKSDVERVQQTMVKILKASGRPQANWVTRWALKRSICKSASPQLIDYCLKHFGGVLVDDGSRVVSSRCNPGSNDFEYRLESVNNVHRLSNQDVNNASVEHVKQDLRYLYETLLHPQTMAEFRSRATREKMIDAATKILDCKHFIKDYLSSTVNPVAINLWCCVELSDELKESPAPPPERLVLPLNATVSDLKIEAAKAFQEVYAMFKRFEVEELLGYGSIDDSITLKFLVGTNGVIRIKGRCSKHGLLRYRMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELYSKKPKQSKKERGSSQVPKAGFVCRGESAAMGSGSNLSVTLRVG", "length": 697, "header": "sp|Q9C810-1|Y1342_ARATH Isoform 1 of PHD finger protein At1g33420 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C810-1" }, "locus": { "chromosome": "1", "start_pos": 12120886, "end_pos": 12123576, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G33420.1", "url": "https://www.ensemblgenomes.org/id/AT1G33420.1" }, { "database": "Ensembl Peptide", "id": "AT1G33420.1", "url": "https://www.ensemblgenomes.org/id/AT1G33420.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 390, "end_pos": 390, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C810", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C810" } ], "site_lbl": "Tyr390" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C877-1", "uniprot_ac": "Q9C877", "uniprot_id": "Q9C877_ARATH", "mass": { "chemical_mass": 42250.0, "monoisotopic_mass": 42250.0 }, "refseq": {}, "gene_names": [ { "name": "T16O9.17", "type": "synonym", "evidence": [ { "id": "Q9C877", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C877" } ] }, { "name": "T16O9_17", "type": "synonym", "evidence": [ { "id": "Q9C877", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C877" } ] } ], "protein_names": [ { "name": "P-loop containing nucleoside triphosphate hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "Q9C877", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C877/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C877", "url": "https://www.uniprot.org/uniprotkb/Q9C877" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C877", "locus": {} } ], "crossref": [ { "id": "AT1G33290", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G33290", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00009", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00009", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "840224", "url": "https://www.ncbi.nlm.nih.gov/gene/840224", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045735", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045735", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G33290", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G33290", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WCKVALL", "url": "https://omabrowser.org/oma/group/WCKVALL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8AQI6", "url": "https://www.orthodb.org/?gene=A0A1P8AQI6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9C877", "url": "https://www.orthodb.org/?gene=Q9C877", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20953", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20953", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20953:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20953:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF19568", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19568", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G33290", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G33290", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AQI6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AQI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQI6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C877", "url": "https://www.uniprot.org/uniprotkb/Q9C877", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C877-1", "url": "https://www.uniprot.org/uniprotkb/Q9C877-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGVCVPWGGGACRLISPIRRRFPVSSSVASLALPDSSSMIVDDNLGAFLEILPKDLRHRLLNDSRRNQLVEVIMDLGRPPEARYLGEPGGQYLRNNEVSMEELEDAQELVGEFGADNRAGIEGTLHRISAIRNRKGFIVGLTCRVGRAVSGHIDMLYDLLHYGKSILFVGRPGVGKTTVLREIARVLSDEFQKRVVIIDTSNEIGGDGDIPHSAIGGSRRMQVPKPSLQHKVMIEAVENHMPQVIIVDEIGTEAEALACRSIAERGVMLIGTAHGEQLQNIIKNPTLSDLIGGIETVTLGDEEARARRSQKSILERKAPPTFYFLIEMRERDYWIAHQTEKSVDMLLRGRNPMVEVRRRDEEYKVVIERWKAYDGQGI", "length": 379, "header": "tr|Q9C877-1|Q9C877_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C877-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AQI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQI6/entry", "sequence": { "sequence": "MDLGRPPEARYLGEPGGQYLRNNEVSMEELEDAQELVGEFGADNRAGIEGTLHRISAIRNRKGFIVGLTCRVGRAVSGHIDMLYDLLHYGKSILFVGRPGVGKTTVLREIARVLSDEFQKRVVIIDTSNEIGGDGDIPHSAIGGSRRMQVPKPSLQHKVMIEAVENHMPQVIIVDEIGTEAEALACRSIAERGVMLIGTAHGEQLQNIIKNPTLSDLIGGIETVTLGDEEARARRSQKSILERKAPPTFYFLIEMRERDYWIAHQTEKSVDMLLRGRNPMVEVRRRDEEYKVVIERWKAYDGQGI", "length": 305, "header": "tr|A0A1P8AQI6-1|Q9C877_ARATH Computationally mapped isoform of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C877-1" }, "locus": { "chromosome": "1", "start_pos": 12074289, "end_pos": 12076162, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G33290.3", "url": "https://www.ensemblgenomes.org/id/AT1G33290.3" }, { "database": "Ensembl Peptide", "id": "AT1G33290.3", "url": "https://www.ensemblgenomes.org/id/AT1G33290.3" } ] } }, { "isoform_ac": "Q9C877-1", "url": "https://www.uniprot.org/uniprotkb/Q9C877/entry", "sequence": { "sequence": "MAGVCVPWGGGACRLISPIRRRFPVSSSVASLALPDSSSMIVDDNLGAFLEILPKDLRHRLLNDSRRNQLVEVIMDLGRPPEARYLGEPGGQYLRNNEVSMEELEDAQELVGEFGADNRAGIEGTLHRISAIRNRKGFIVGLTCRVGRAVSGHIDMLYDLLHYGKSILFVGRPGVGKTTVLREIARVLSDEFQKRVVIIDTSNEIGGDGDIPHSAIGGSRRMQVPKPSLQHKVMIEAVENHMPQVIIVDEIGTEAEALACRSIAERGVMLIGTAHGEQLQNIIKNPTLSDLIGGIETVTLGDEEARARRSQKSILERKAPPTFYFLIEMRERDYWIAHQTEKSVDMLLRGRNPMVEVRRRDEEYKVVIERWKAYDGQGI", "length": 379, "header": "tr|Q9C877-1|Q9C877_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C877-1" }, "locus": { "chromosome": "1", "start_pos": 12074099, "end_pos": 12076289, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G33290.1", "url": "https://www.ensemblgenomes.org/id/AT1G33290.1" }, { "database": "Ensembl Peptide", "id": "AT1G33290.1", "url": "https://www.ensemblgenomes.org/id/AT1G33290.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 228, "end_pos": 228, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C877", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C877" } ], "site_lbl": "Ser228" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AQI6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQI6" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AQI6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQI6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G33290", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G33290", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "Q9C877", "url": "https://www.uniprot.org/uniprotkb/Q9C877" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "Q9C877", "url": "https://www.uniprot.org/uniprotkb/Q9C877" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9C877", "url": "https://www.uniprot.org/uniprotkb/Q9C877" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9C877", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C877" }, { "id": "SM00382", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00382" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AAA+ ATPase", "eco_id": "ECO_0000259", 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Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G55030", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G55030", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WHCEKEY", "url": "https://omabrowser.org/oma/group/WHCEKEY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9C7M1", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9C7M1", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT1G55030", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G55030", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AQZ2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AQZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C7M1", "url": "https://www.uniprot.org/uniprotkb/Q9C7M1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C7M1-1", "url": "https://www.uniprot.org/uniprotkb/Q9C7M1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNNRGAVTDMISQLPEPLILQILGSLPTKVAITTSVLSKQWQSHWKMMPKLEFDSFLRRLDLENVTKCLLSHKAPVLQTFSLKVRLDRRNNAVDIGCLIGIAMTRNVRKLVLEVYFHRGTFTFPRSLYHCETLETLELILNVVMDVPPSVYLKSLKTLYLLAVDFKDDESVINLLSGCPNLQDLVMRRNSSSNVKTFTIAVPSLQRLAIHNGSGTPQHCGYTINTPSLKYLKLEGSKAFESFMVENVSELIEVNITDVSEIIDEKLRVFLTSVTRLSLALSPSVFTFPTGIIFNQLVYLEICTNKTSWWKLLPLMLHSSPKLQVLKLIDDTDGMNYVEASGEWNQPKNVPECLHHLEKFIWEGYKWKREEIEVAKYILKNTNRLKRAIFSLKGISSEDRLVVVEDLKSVVMATTNSCQFQFI", "length": 422, "header": "sp|Q9C7M1-1|FBD2_ARATH Isoform 1 of Putative FBD-associated F-box protein At1g55030 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C7M1-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AQZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQZ2/entry", "sequence": { "sequence": "MKQCKRDGESMNNRGAVTDMISQLPEPLILQILGSLPTKVAITTSVLSKQWQSHWKMMPKLEFDSFLRRLDLENVTKCLLSHKAPVLQTFSLKVRLDRRNNAVDIGCLIGIAMTRNVRKLVLEVYFHRGTFTFPRSLYHCETLETLELILNVVMDVPPSVYLKSLKTLYLLAVDFKDDESVINLLSGCPNLQDLVMRRNSSSNVKTFTIAVPSLQRLAIHNGSGTPQHCGYTINTPSLKYLKLEGSKAFESFMVENVSELIEVNITDVSEIIDEKLRVFLTSVTRLSLALSPSVFTFPTGIIFNQLVYLEICTNKTSWWKLLPLMLHSSPKLQVLKLIDDTDGMNYVEASGEWNQPKNVPECLHHLEKFIWEGYKWKREEIEVAKYILKNTNRLKRAIFSLKGISSEDRLVVVEDLKSVVMATTNSCQFQFI", "length": 432, "header": "tr|A0A1P8AQZ2-1|FBD2_ARATH Computationally mapped isoform of Putative FBD-associated F-box protein At1g55030 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C7M1-1" }, "locus": { "chromosome": "1", "start_pos": 20530417, "end_pos": 20532151, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G55030.2", "url": "https://www.ensemblgenomes.org/id/AT1G55030.2" }, { "database": "Ensembl Peptide", "id": "AT1G55030.2", "url": "https://www.ensemblgenomes.org/id/AT1G55030.2" } ] } }, { "isoform_ac": "Q9C7M1-1", "url": "https://www.uniprot.org/uniprotkb/Q9C7M1/entry#Q9C7M1-1", "sequence": { "sequence": "MNNRGAVTDMISQLPEPLILQILGSLPTKVAITTSVLSKQWQSHWKMMPKLEFDSFLRRLDLENVTKCLLSHKAPVLQTFSLKVRLDRRNNAVDIGCLIGIAMTRNVRKLVLEVYFHRGTFTFPRSLYHCETLETLELILNVVMDVPPSVYLKSLKTLYLLAVDFKDDESVINLLSGCPNLQDLVMRRNSSSNVKTFTIAVPSLQRLAIHNGSGTPQHCGYTINTPSLKYLKLEGSKAFESFMVENVSELIEVNITDVSEIIDEKLRVFLTSVTRLSLALSPSVFTFPTGIIFNQLVYLEICTNKTSWWKLLPLMLHSSPKLQVLKLIDDTDGMNYVEASGEWNQPKNVPECLHHLEKFIWEGYKWKREEIEVAKYILKNTNRLKRAIFSLKGISSEDRLVVVEDLKSVVMATTNSCQFQFI", "length": 422, "header": "sp|Q9C7M1-1|FBD2_ARATH Isoform 1 of Putative FBD-associated F-box protein At1g55030 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C7M1-1" }, "locus": { "chromosome": "1", "start_pos": 20530417, "end_pos": 20531768, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G55030.1", "url": "https://www.ensemblgenomes.org/id/AT1G55030.1" }, { "database": "Ensembl Peptide", "id": "AT1G55030.1", "url": "https://www.ensemblgenomes.org/id/AT1G55030.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AQZ2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQZ2" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AQZ2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQZ2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G55030", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G55030", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 246, "end_pos": 248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 304, "end_pos": 306, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9C7M1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 422, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9C7M1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9C7M1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9C7M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C7M1" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 8, "end_pos": 60, "start_aa": "Thr", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 189, "end_pos": 191 }, { "start_pos": 211, "end_pos": 213 }, { "start_pos": 246, "end_pos": 248 }, { "start_pos": 254, "end_pos": 256 }, { "start_pos": 304, "end_pos": 306 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9CAM9-1", "uniprot_ac": "Q9CAM9", "uniprot_id": "Q9CAM9_ARATH", "mass": { "chemical_mass": 42535.0, "monoisotopic_mass": 42535.0 }, "refseq": {}, "gene_names": [ { "name": "F16M19.12", "type": "synonym", "evidence": [ { "id": "Q9CAM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9" } ] }, { "name": "F16M19_12", "type": "synonym", "evidence": [ { "id": "Q9CAM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9" } ] } ], "protein_names": [ { "name": "O-methyltransferase family protein", "type": "synonym", "evidence": [ { "id": "Q9CAM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9CAM9", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9", "locus": {} } ], "crossref": [ { "id": "AT1G63140", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G63140", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "842618", "url": "https://www.ncbi.nlm.nih.gov/gene/842618", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001077", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001077", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012967", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012967", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G63140", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G63140", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR11746", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11746", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00891", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00891", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08100", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08100", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G63140", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G63140", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AS31", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AS31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AS31-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AS31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AS59", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AS59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AS59-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AS59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I1Z6", "url": "https://www.uniprot.org/uniprotkb/F4I1Z6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I1Z6-1", "url": "https://www.uniprot.org/uniprotkb/F4I1Z6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CAM9", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CAM9-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENHLQHSLTIIPKPDLIKEEQRYHEDTVSLQAERILHAMTFPMVLKTALELGVIDMITSVDDGVWLSPSEIALGLPTKPTNPEAPVLLDRMLVLLASHSILKYRTVETGDNIGSRKTERVYAAEPVCTFFLNRGDGLGSLATLFMVLQGEVCMKPWEHLKDMILEGKDAFTSAHGMRFFELIGSNEQFAEMFNRAMSEASTLIMKKVLEVYKGFEDVNTLVDVGGGIGTIIGQVTSKYPHIKGINFDLASVLAHAPFNKGVEHVSGDMFKEIPKGDAIFMKWILHDWTDEDCVKILKNYWKSLPEKGKVIIVEVVTPEEPKINDISSNIVFGMDMLMLAVSSGGKERSLSQFETLASDSGFLRCEIICHAFSYSVIELHK", "length": 381, "header": "tr|Q9CAM9-1|Q9CAM9_ARATH Isoform 1 of O-methyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9CAM9-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AS31-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AS31/entry", "sequence": { "sequence": "MNTIYTFITYLSRFSNQTTTMENHLQHSLTIIPKPDLIKEEQRYHEDTVSLQAERILHAMTFPMVLKTALELGVIDMITSVDDGVWLSPSEIALGLPTKPTNPEAPVLLDRMLVLLASHSILKYRTVETGDNIGSRKTERVYAAEPVCTFFLNRGDGLGSLATLFMVLQGEVCMKPWEHLKDMILEGKDAFTSAHGMRFFELIGSNEQFAEMFNRAMSEASTLIMKKVLEVYKGFEDVNTLVDVGGGIGTIIGQVTSKYPHIKGINFDLASVLAHAPFNKGVEHVSGDMFKEIPKGDAIFMKWILHDWTDEDCVKILKNYWKSLPEKGKVIIVEVVTPEEPKINDISSNIVFGMDMLMLAVSSGGKERSLSQFETLASDSGFLRCEIICHAFSYSVIELHK", "length": 401, "header": "tr|A0A1P8AS31-1|Q9CAM9_ARATH Computationally mapped isoform of O-methyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9CAM9-1" }, "locus": { "chromosome": "1", "start_pos": 23417441, "end_pos": 23419002, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63140.4", "url": "https://www.ensemblgenomes.org/id/AT1G63140.4" }, { "database": "Ensembl Peptide", "id": "AT1G63140.4", "url": "https://www.ensemblgenomes.org/id/AT1G63140.4" } ] } }, { "isoform_ac": "A0A1P8AS59-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AS59/entry", "sequence": { "sequence": "MNTIYTFITYLSRFSNQTTTMENHLQHSLTIIPKPDLIKEEQRYHEDTVSLQAERILHAMTFPMVLKTALELGVIDMITSVDDGVWLSPSEIALGLPTKPTNPEAPVLLDRMLVLLASHSILKYRTVETGDNIGSRKTERVYAAEPVCTFFLNRGDGLGSLATLFMVLQGEVCMKPWEHLKDMILEGKDAFTSAHGMRFFELIGSNEQFAEMFNRAMSEASTLIMKKVLEVYKGFEDVNTLVDVGGGIGTIIGQVTSKYPHIKGINFDLASVLAHAPFNKGTRPLSDN", "length": 288, "header": "tr|A0A1P8AS59-1|Q9CAM9_ARATH Computationally mapped isoform of O-methyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9CAM9-1" }, "locus": { "chromosome": "1", "start_pos": 23417441, "end_pos": 23419045, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63140.3", "url": "https://www.ensemblgenomes.org/id/AT1G63140.3" }, { "database": "Ensembl Peptide", "id": "AT1G63140.3", "url": "https://www.ensemblgenomes.org/id/AT1G63140.3" } ] } }, { "isoform_ac": "F4I1Z6-1", "url": "https://www.uniprot.org/uniprotkb/F4I1Z6/entry", "sequence": { "sequence": "MNTIYTFITYLSRFSNQTTTMENHLQHSLTIIPKPDLIKEEQRYHEDTVSLQAERILHAMTFPMVLKTALELGVIDMITSVDDGVWLSPSEIALGLPTKPTNPEAPVLLDRMLVLLASHSILKYRTVETGDNIGSRKTERVYAAEPVCTFFLNRGDGLGSLATLFMVLQGEVCMKPWEHLKDMILEGKDAFTSAHGMRFFELIGSNEQFAEMFNRAMSEASTLIMKKVLEVYKGFEDVNTLVDVGGGIGTIIGQVTSKYPHIKGINFDLASVLAHAPFNKGVEHVSGDMFKEIPKGDAIFMKVSRK", "length": 306, "header": "tr|F4I1Z6-1|Q9CAM9_ARATH Computationally mapped isoform of O-methyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9CAM9-1" }, "locus": { "chromosome": "1", "start_pos": 23417441, "end_pos": 23419045, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63140.1", "url": "https://www.ensemblgenomes.org/id/AT1G63140.1" }, { "database": "Ensembl Peptide", "id": "AT1G63140.1", "url": "https://www.ensemblgenomes.org/id/AT1G63140.1" } ] } }, { "isoform_ac": "Q9CAM9-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9/entry", "sequence": { "sequence": "MENHLQHSLTIIPKPDLIKEEQRYHEDTVSLQAERILHAMTFPMVLKTALELGVIDMITSVDDGVWLSPSEIALGLPTKPTNPEAPVLLDRMLVLLASHSILKYRTVETGDNIGSRKTERVYAAEPVCTFFLNRGDGLGSLATLFMVLQGEVCMKPWEHLKDMILEGKDAFTSAHGMRFFELIGSNEQFAEMFNRAMSEASTLIMKKVLEVYKGFEDVNTLVDVGGGIGTIIGQVTSKYPHIKGINFDLASVLAHAPFNKGVEHVSGDMFKEIPKGDAIFMKWILHDWTDEDCVKILKNYWKSLPEKGKVIIVEVVTPEEPKINDISSNIVFGMDMLMLAVSSGGKERSLSQFETLASDSGFLRCEIICHAFSYSVIELHK", "length": 381, "header": "tr|Q9CAM9-1|Q9CAM9_ARATH Isoform 1 of O-methyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9CAM9-1" }, "locus": { "chromosome": "1", "start_pos": 23417494, "end_pos": 23419002, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63140.2", "url": "https://www.ensemblgenomes.org/id/AT1G63140.2" }, { "database": "Ensembl Peptide", "id": "AT1G63140.2", "url": "https://www.ensemblgenomes.org/id/AT1G63140.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AS31", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AS31" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AS31", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AS31" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G63140", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G63140", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "Q9CAM9", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9CAM9", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "Q9CAM9", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9" } ], "pmid": "" }, { "name": "S-adenosylmethionine-dependent methyltransferase activity", "id": "GO:0008757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008757", "evidence": [ { "database": "UniProtKB", "id": "Q9CAM9", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9" } ], "pmid": "" }, { "name": "O-methyltransferase activity", "id": "GO:0008171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008171", "evidence": [ { "database": "UniProtKB", "id": "Q9CAM9", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "Q9CAM9", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9CAM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAM9" }, { "id": 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR053781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G66300", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G66300", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SICCNIW", "url": "https://omabrowser.org/oma/group/SICCNIW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9C8Y7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9C8Y7", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT1G66300", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G66300", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AS92", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AS92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AS92-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AS92-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C8Y7", "url": 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"https://www.ensemblgenomes.org/id/AT1G66300.2" } ] } }, { "isoform_ac": "Q9C8Y7-1", "url": "https://www.uniprot.org/uniprotkb/Q9C8Y7/entry#Q9C8Y7-1", "sequence": { "sequence": "MDEDGEKRVRTKRLCSPESSDKKSGYEVDWVRDLPESLICHVLLNLSTKDVIKNCVLSTKWRYLWRYVPGLDLDCSDFTEYNTFVSFVDRFLSTNTESYLNKFKLGFDCDLVGDEETGNAQMARWINDVVKRKVQHLDLEWGALEIPPIVYVCKSLVSLKLCGVILPIPEFVCLPSVKVIVLDWVKFANDLALEMLISGCLVLKSLTLCRSNNDNVKVLRVRSQSLLSFNYNGPNTMGPEYEELIVEIDTPKLQDLTLSHRMTASFIIKNRSSLVGAHINIEFNFCFGEKFDPKNLPKREMIRNFLVGISGVKNMAIAACTLEVIYDYSRCEPLPLFRNLCLLSVEFYEDRWEMLPFFLESCPNLKSLVVGSNRYRMERTSIISGHRCLLSSLEYVEIETPLTGEVFEMKLVSYLLENSPILKKLTIHLHDNSRKKAECEILTIPRRSSSCQVILL", "length": 456, "header": "sp|Q9C8Y7-1|FDL8_ARATH Isoform 1 of Putative F-box/FBD/LRR-repeat protein At1g66300 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C8Y7-1" }, "locus": { "chromosome": "1", "start_pos": 24716365, "end_pos": 24718050, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G66300.1", "url": "https://www.ensemblgenomes.org/id/AT1G66300.1" }, { "database": "Ensembl Peptide", "id": "AT1G66300.1", "url": "https://www.ensemblgenomes.org/id/AT1G66300.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AS92", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AS92" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AS92", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AS92" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G66300", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G66300", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9C8Y7", "url": "https://www.uniprot.org/uniprotkb/Q9C8Y7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9C8Y7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 456, 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Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AU16", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AU16" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AU16", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AU16" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G52820", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G52820", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C9S0-1", "url": "https://www.uniprot.org/uniprotkb/Q9C9S0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKSKKISTGQIFGCESLLGCIFQSWSPRRRKPSLPEKDHRAKDNLSSKSSTTVTNPKILPRKSTDTSSQPKKSDSQKPQQKPKPDENHPRKSSESARKSSDSARKSISSGSSRTESKRFSLNGVMGNIIVKPQPAVKTDVTQTKSRWEGKPVNHRLDPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEAGKYTETKHIEQVEDVVKCLRRCDEARRSKEWNVALKETLFAISYGADSSPRVYALQTEALLHLQRHEEAYSVYQKGTKRFDIDSFIKIFGLSLTSYLLMVGAQVYIAVGRFEDAVTASRQAARLDPSSEEVNAVARKARAVASARLSGNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPEDEETRRALTEVNVRFKKQTGGDVRFKGVGSELVVAN", "length": 530, "header": "tr|Q9C9S0-1|Q9C9S0_ARATH Isoform 1 of Tetratricopeptide repeat (TPR)-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN=TPR12 PE=1 SV=1 CANONICAL=Q9C9S0-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AVA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AVA2/entry", "sequence": { "sequence": "MAKSKKISTGQIFGCESLLGCIFQSWSPRRRKPSLPEKDHRAKDNLSSKSSTTVTNPKILPRKSTDTSSQPKKSDSQKPQQKPKPDENHPRKSSESARKSSDSARKSISSGSSRTESKRFSLNGVMGNIIVKPQPAVKTDVTQTKSRWEGKPVNHRLDPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEAGKYTETKHIEQVEDVVKCLRRCDEARRSKEWNVALKETLFAISYGADSSPRVYALQTEALLHLQRHEEAYSVYQKGTKRFDIDSFIKIFGLSLTSYLLMVGAQVYIAVGRFEDAVTASRQAARLDPSSEEVNAVARKARAVASARLSGNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKVFKSLI", "length": 480, "header": "tr|A0A1P8AVA2-1|Q9C9S0_ARATH Computationally mapped isoform of Tetratricopeptide repeat (TPR)-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN=TPR12 PE=1 SV=1 CANONICAL=Q9C9S0-1" }, "locus": { "chromosome": "1", "start_pos": 29393813, "end_pos": 29396105, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G78120.2", "url": "https://www.ensemblgenomes.org/id/AT1G78120.2" }, 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29393813, "end_pos": 29396105, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G78120.1", "url": "https://www.ensemblgenomes.org/id/AT1G78120.1" }, { "database": "Ensembl Peptide", "id": "AT1G78120.1", "url": "https://www.ensemblgenomes.org/id/AT1G78120.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AVA2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AVA2" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": 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"categories": [ "Protein Classification" ] }, { "id": "PTHR11746", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11746", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00891", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00891", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08100", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08100", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G77530", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G77530", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AVT1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AVT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AVT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AVT1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CAQ3", "url": 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"MSNHLQDPLTTYPKPGLTKEEQEIDEKMVSLQAESIVNAVAFPMVLKAALELGVIDTIAAASNGTWLSPSEIAVSLPNKPTNPEAPVLLDRMLRLLVSHSILKCCMVESRENGQTGKIERVYAAEPICKYFLKDSDGSGSLSSLLLLLHSQVILKTWTNLKDVILEGKDAFSSAHDMRLFEYISSDDQFSKLFHRAMSESSTMVMKKVLEEYRGFEDVNTLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLTQAPFYPGTKLYLVYLLC", "length": 271, "header": "tr|A0A1P8AVT1-1|Q9CAQ3_ARATH Computationally mapped isoform of O-methyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAQ3-1" }, "locus": { "chromosome": "1", "start_pos": 29135904, "end_pos": 29137640, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G77530.2", "url": "https://www.ensemblgenomes.org/id/AT1G77530.2" }, { "database": "Ensembl Peptide", "id": "AT1G77530.2", "url": "https://www.ensemblgenomes.org/id/AT1G77530.2" } ] } }, { "isoform_ac": "Q9CAQ3-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAQ3/entry", "sequence": { "sequence": "MSNHLQDPLTTYPKPGLTKEEQEIDEKMVSLQAESIVNAVAFPMVLKAALELGVIDTIAAASNGTWLSPSEIAVSLPNKPTNPEAPVLLDRMLRLLVSHSILKCCMVESRENGQTGKIERVYAAEPICKYFLKDSDGSGSLSSLLLLLHSQVILKTWTNLKDVILEGKDAFSSAHDMRLFEYISSDDQFSKLFHRAMSESSTMVMKKVLEEYRGFEDVNTLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLTQAPFYPGVKHVSGDMFIEVPKGDAIFMKWILHDWGDEDCIKILKNCWKSLPEKGKVIIVEMITPMEPKPNDFSCNTVLGMDLLMLTQCSGGKERSLSQFENLAFASGFLLCEIICLSYSYSVIEFHK", "length": 381, "header": "tr|Q9CAQ3-1|Q9CAQ3_ARATH Isoform 1 of O-methyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAQ3-1" }, "locus": { "chromosome": "1", "start_pos": 29135904, "end_pos": 29137640, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G77530.1", "url": "https://www.ensemblgenomes.org/id/AT1G77530.1" }, { "database": "Ensembl Peptide", "id": "AT1G77530.1", "url": "https://www.ensemblgenomes.org/id/AT1G77530.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AVT1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AVT1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AVT1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AVT1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G77530", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G77530", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "Q9CAQ3", "url": "https://www.uniprot.org/uniprotkb/Q9CAQ3" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9CAQ3", "url": "https://www.uniprot.org/uniprotkb/Q9CAQ3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "Q9CAQ3", "url": "https://www.uniprot.org/uniprotkb/Q9CAQ3" } ], "pmid": "" }, { "name": "O-methyltransferase activity", "id": "GO:0008171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008171", "evidence": [ { "database": "UniProtKB", "id": "Q9CAQ3", "url": "https://www.uniprot.org/uniprotkb/Q9CAQ3" } ], "pmid": "" }, { "name": "S-adenosylmethionine-dependent methyltransferase activity", "id": "GO:0008757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008757", "evidence": [ { "database": "UniProtKB", "id": "Q9CAQ3", "url": "https://www.uniprot.org/uniprotkb/Q9CAQ3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "Q9CAQ3", "url": "https://www.uniprot.org/uniprotkb/Q9CAQ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9CAQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAQ3" }, { "id": "PF00891", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00891" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "O-methyltransferase C-terminal", "eco_id": "ECO_0000259", "start_pos": 157, "end_pos": 362, "start_aa": "Trp", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "Q9CAQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAQ3" }, { "id": "PF08100", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08100" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "O-methyltransferase dimerisation", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 134, "start_aa": "Ile", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C803-1", "uniprot_ac": "Q9C803", "uniprot_id": "Q9C803_ARATH", "mass": { "chemical_mass": 18828.0, "monoisotopic_mass": 18828.0 }, "refseq": {}, "gene_names": [ { "name": "F10C21.22", "type": "synonym", "evidence": [ { "id": "Q9C803", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C803" } ] }, { "name": "F10C21_22", "type": "synonym", "evidence": [ { "id": "Q9C803", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C803" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase", "type": "synonym", "evidence": [ { "id": "Q9C803", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C803/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C803", "url": "https://www.uniprot.org/uniprotkb/Q9C803" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C803", "locus": {} } ], "crossref": [ { "id": "AT1G33490", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G33490", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "840243", "url": "https://www.ncbi.nlm.nih.gov/gene/840243", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9C803", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9C803*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR018639", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018639", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G33490", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G33490", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GHASHEV", "url": "https://omabrowser.org/oma/group/GHASHEV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8AW92", "url": "https://www.orthodb.org/?gene=A0A1P8AW92", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8AW94", "url": "https://www.orthodb.org/?gene=A0A1P8AW94", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9C803", "url": "https://www.orthodb.org/?gene=Q9C803", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35102", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35102", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35102:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35102:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09835", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09835", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G33490", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G33490", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AW92", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AW92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AW92-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AW92-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AW94", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AW94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AW94-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AW94-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C803", "url": "https://www.uniprot.org/uniprotkb/Q9C803", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C803-1", "url": "https://www.uniprot.org/uniprotkb/Q9C803-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAISKGRLKVWFDKKISEPLIQILRRGAEPKQLAFSAALGITMGVFPICGVTVLLCGVAIASLGSLCHAPTVMLANFIATPIELSLVVPFLRLGEKITGGPHFPLTSDALKKVFTGQASRDVFLSIGNALLGWLIAAPFVIVALYIMFLPCFKILVRKFSSVDSTAKTPTKERIA", "length": 175, "header": "tr|Q9C803-1|Q9C803_ARATH Isoform 1 of E3 ubiquitin-protein ligase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C803-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AW92-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AW92/entry", "sequence": { "sequence": "MAISKGRLKVWFDKKISEPLIQILRRGAEPKQLAFSAALGITMGVFPICGVTVLLCGVAIASLGSLCHAPTVMLANFIATPIELSLVVPFLRLGEKITGGPHFPLTSDALKKVFTGQASRDVFLSIGNAVRFFCLSLVV", "length": 139, "header": "tr|A0A1P8AW92-1|Q9C803_ARATH Computationally mapped isoform of E3 ubiquitin-protein ligase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C803-1" }, "locus": { "chromosome": "1", "start_pos": 12150688, "end_pos": 12152460, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G33490.3", "url": "https://www.ensemblgenomes.org/id/AT1G33490.3" }, { "database": "Ensembl Peptide", "id": "AT1G33490.3", "url": "https://www.ensemblgenomes.org/id/AT1G33490.3" } ] } }, { "isoform_ac": "A0A1P8AW94-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AW94/entry", "sequence": { "sequence": "MGVFPICGVTVLLCGVAIASLGSLCHAPTVMLANFIATPIELSLVVPFLRLGEKITGGPHFPLTSDALKKVFTGQASRDVFLSIGNALLGWLIAAPFVIVALYIMFLPCFKILVRKFSSVDSTAKTPTKERIA", "length": 133, "header": "tr|A0A1P8AW94-1|Q9C803_ARATH Computationally mapped isoform of E3 ubiquitin-protein ligase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C803-1" }, "locus": { "chromosome": "1", "start_pos": 12150674, "end_pos": 12152394, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G33490.2", "url": "https://www.ensemblgenomes.org/id/AT1G33490.2" }, { "database": "Ensembl Peptide", "id": "AT1G33490.2", "url": "https://www.ensemblgenomes.org/id/AT1G33490.2" } ] } }, { "isoform_ac": "Q9C803-1", "url": "https://www.uniprot.org/uniprotkb/Q9C803/entry", "sequence": { "sequence": "MAISKGRLKVWFDKKISEPLIQILRRGAEPKQLAFSAALGITMGVFPICGVTVLLCGVAIASLGSLCHAPTVMLANFIATPIELSLVVPFLRLGEKITGGPHFPLTSDALKKVFTGQASRDVFLSIGNALLGWLIAAPFVIVALYIMFLPCFKILVRKFSSVDSTAKTPTKERIA", "length": 175, "header": "tr|Q9C803-1|Q9C803_ARATH Isoform 1 of E3 ubiquitin-protein ligase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C803-1" }, "locus": { "chromosome": "1", "start_pos": 12150688, "end_pos": 12152460, "strand": "+", "evidence": [ { 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"MADSLRTSFSERDVEQAITSLKKGSYLLKYGRRGKPKFCPFQLTSDESALVWYSGKEEKQIKLSQVLRIVPGQRTPTFKRYPRPEKEYQSFSLICPDRSLDLICKDKDEAEVWVVGLKSLITRVKVSKWKTTIKPEITSAECPTPHARRVSPFVTILDQVIQPSNETSTQTRLGKVFSDIVAITAPPSNNNQTEASGNLFCPFSPTPANVENSNLRFSTNDPFRLSLSSAVSTSSHGSYHEDFDALGDVFVWGESISDGVLSGTGNSLNSTTEDALLPKALESTIVLDAQNIACGKCHAVLVTKQGEIFSWGEGKGGKLGHGLETDAQKPKFISSVRGLGFKSLACGDFHTCAITQSGDLYSWGDGTHNVDLLGHGNESSCWIPKRVTGDLQGLYVSDVACGPWHTAVVASSGQLFTFGDGTFGALGHGDRRSTSVPREVESLIGLIVTKVACGVWHTAAVVEVTNEASEAEVDSSRGQVFTWGDGEKGQLGHGDNDTKLLPECVISLTNENICQVACGHSLTVSRTSRGHVYTMGSTAYGQLGNPTAKGNFPERVEGDIVEASVEEIACGSYHVAVLTSKSEIYTWGKGLNGQLGHGNVENKREPAVVGFLREKQVKAITCGSNFTAVICVHKWVPGSEHSLCAGCRNPFNFRRKRHNCYNCGLVFCKVCSSRKSLRAALAPDMNKPYRVCYGCFTKLKKSRESSPSTPTSRTRKLLNMRKSTDVSERDSLTQKFLSVNARLSSADSSLHYSERRHHRRDLKPEVNNSNVFPSMNGSLQPVGSPFSKGSTALPKIPKNMMVKIPGSGMSSRTTSPVSVKSTSPRRSYEVAAAESKQLKDSFNQDMAGLKEQVEQLASKAHQLEEELEKTKRQLKVVTAMAADEAEENRSAKEVIRSLTTQLKEMAEKQSQKDSISTNSKHTDKEKSETVTQTSNQTHIRSMVSQDSQNENNLTSKSFANGHRKQNDKPEKVVQDEPGVYLTLLSLPGGGTELKRVRFSRKQFTEEQAEKWWGENGAKVCERHNILVS", 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T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I378", "url": "https://www.uniprot.org/uniprotkb/F4I378" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I378", "url": "https://www.uniprot.org/uniprotkb/F4I378" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G29980", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G29980", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9C8S1", "url": "https://www.uniprot.org/uniprotkb/Q9C8S1" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9C8S1", "url": "https://www.uniprot.org/uniprotkb/Q9C8S1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "Q9C8S1", "url": "https://www.uniprot.org/uniprotkb/Q9C8S1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "Q9C8S1", "url": "https://www.uniprot.org/uniprotkb/Q9C8S1" } ], "pmid": "" }, { "name": 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"length": 992, "header": "tr|F4I3Q6-1|Q9CAD9_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAD9-1" }, "locus": { "chromosome": "1", "start_pos": 23645429, "end_pos": 23649287, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63740.1", "url": "https://www.ensemblgenomes.org/id/AT1G63740.1" }, { "database": "Ensembl Peptide", "id": "AT1G63740.1", "url": "https://www.ensemblgenomes.org/id/AT1G63740.1" } ] } }, { "isoform_ac": "Q9CAD9-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAD9/entry", "sequence": { "sequence": 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"id": "IPR055357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G56400", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G56400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FNENFFV", "url": "https://omabrowser.org/oma/group/FNENFFV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4I537", "url": "https://www.orthodb.org/?gene=F4I537", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9C7X8", "url": "https://www.orthodb.org/?gene=Q9C7X8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9C7X8", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9C7X8", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT1G56400", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G56400", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I537", "url": "https://www.uniprot.org/uniprotkb/F4I537", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I537-1", "url": "https://www.uniprot.org/uniprotkb/F4I537-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C7X8", "url": "https://www.uniprot.org/uniprotkb/Q9C7X8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C7X8-1", "url": "https://www.uniprot.org/uniprotkb/Q9C7X8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTFKRIASSIQQDRLSNLPDVLLIMIISCLSFKECIRTSVLAKRWRYLCRETRNISFKETEYVDHFVSDKRSKRVSFAAYMCQWVSRYHGRYIETLEIYFSIPSDFLAAVESLIEFAVSRQVKNLVLDFSDPSWISTSCASRYDYVCVQLPVCVYSLTTLESLKIYSCGFDPSKFSNSRLPRKLSIGWIKLTDVESLLLNSPTLKSLSINYCWGIEIRNIAGDMKEFVFESCDFSSFMVCCFDLPNVEIFKYSGQILSFDVKRMNMSIKDVILDFTAEGLYEDRNQRTKLEGSVLSAFLNNLRGARTLSVCPYLLQTIQECEDPFDLLRPMETQHLVLRTRLHVMEFKGIKLLLDNCPNLETLTFDIFSRSLFSYNKSYYGVGPRSYWKKNLTYKSLPKTLKVVVVRNFTGRFGELNVLKFLIQSGRGRWPGREHGPMLERVELYMDSSMAESQKELADDGAMMLQSISGDVQVLVYDP", "length": 479, "header": "sp|Q9C7X8-1|FBL33_ARATH Isoform 1 of Putative F-box/LRR-repeat protein At1g56400 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C7X8-1" }, "isoforms": [ { "isoform_ac": "F4I537-1", "url": "https://www.uniprot.org/uniprotkb/F4I537/entry", "sequence": { "sequence": "MTFKRIASSIQQDRLSNLPDVLLIMIISCLSFKECIRTSVLAKRWRYHGRYIETLEIYFSIPSDFLAAVESLIEFAVSRQVKNLVLDFSDPSWISTSCASRYDYVCVQLPVCVYSLTTLESLKIYSCGFDPSKFSNSRLPRKLSIGWIKLTDVESLLLNSPTLKSLSINYCWGIEIRNIAGDMKEFVFESCDFSSFMVCCFDLPNVEIFKYSGQILSFDVKRMNMSIKDVILDFTAEGLYEDRNQRTKLEGSVLSAFLNNLRGARTLSVCPYLLQTIQECEDPFDLLRPMETQHLVLRTRLHVMEFKGIKLLLDNCPNLETLTFDIFSRSLFSYNKSYYGVGPRSYWKKNLTYKSLPKTLKVVVVRNFTGRFGELNVLKFLIQSGRGRWPGREHGPMLERVELYMDSSMAESQKELADDGAMMLQSISGDVQVLVYDP", "length": 438, "header": "tr|F4I537-1|FBL33_ARATH Computationally mapped isoform of Putative F-box/LRR-repeat protein At1g56400 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C7X8-1" }, "locus": { "chromosome": "1", "start_pos": 21111727, "end_pos": 21113621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G56400.2", "url": "https://www.ensemblgenomes.org/id/AT1G56400.2" }, { "database": "Ensembl Peptide", "id": "AT1G56400.2", "url": "https://www.ensemblgenomes.org/id/AT1G56400.2" } ] } }, { "isoform_ac": "Q9C7X8-1", "url": "https://www.uniprot.org/uniprotkb/Q9C7X8/entry#Q9C7X8-1", "sequence": { "sequence": "MTFKRIASSIQQDRLSNLPDVLLIMIISCLSFKECIRTSVLAKRWRYLCRETRNISFKETEYVDHFVSDKRSKRVSFAAYMCQWVSRYHGRYIETLEIYFSIPSDFLAAVESLIEFAVSRQVKNLVLDFSDPSWISTSCASRYDYVCVQLPVCVYSLTTLESLKIYSCGFDPSKFSNSRLPRKLSIGWIKLTDVESLLLNSPTLKSLSINYCWGIEIRNIAGDMKEFVFESCDFSSFMVCCFDLPNVEIFKYSGQILSFDVKRMNMSIKDVILDFTAEGLYEDRNQRTKLEGSVLSAFLNNLRGARTLSVCPYLLQTIQECEDPFDLLRPMETQHLVLRTRLHVMEFKGIKLLLDNCPNLETLTFDIFSRSLFSYNKSYYGVGPRSYWKKNLTYKSLPKTLKVVVVRNFTGRFGELNVLKFLIQSGRGRWPGREHGPMLERVELYMDSSMAESQKELADDGAMMLQSISGDVQVLVYDP", "length": 479, "header": "sp|Q9C7X8-1|FBL33_ARATH Isoform 1 of Putative F-box/LRR-repeat protein At1g56400 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C7X8-1" }, "locus": { "chromosome": "1", "start_pos": 21111805, "end_pos": 21113621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G56400.1", "url": "https://www.ensemblgenomes.org/id/AT1G56400.1" }, { "database": "Ensembl Peptide", "id": "AT1G56400.1", "url": "https://www.ensemblgenomes.org/id/AT1G56400.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I537", "url": "https://www.uniprot.org/uniprotkb/F4I537" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I537", "url": "https://www.uniprot.org/uniprotkb/F4I537" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G56400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G56400", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" }, { "start_pos": 376, "end_pos": 378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 391, "end_pos": 393, "annotation": "n_glycosylation_sequon" }, { "start_pos": 408, "end_pos": 410, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9C7X8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 479, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9C7X8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9C7X8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9C7X8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C7X8" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 12, "end_pos": 60, "start_aa": "Gln", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 265, "end_pos": 267 }, { "start_pos": 376, "end_pos": 378 }, { "start_pos": 391, "end_pos": 393 }, { "start_pos": 408, "end_pos": 410 }, { "start_pos": 54, "end_pos": 56 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C7X2-1", "uniprot_ac": "Q9C7X2", "uniprot_id": "Q9C7X2_ARATH", "mass": { "chemical_mass": 59649.0, "monoisotopic_mass": 59649.0 }, "refseq": {}, "gene_names": [ { "name": "F13N6.4", "type": "synonym", "evidence": [ { "id": "Q9C7X2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C7X2" } ] }, { "name": "F13N6_4", "type": "synonym", "evidence": [ { "id": "Q9C7X2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C7X2" } ] } ], "protein_names": [ { "name": "HIT zinc finger and PAPA-1-like domain-containing protein", "type": "synonym", "evidence": [ { "id": "Q9C7X2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C7X2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C7X2", "url": "https://www.uniprot.org/uniprotkb/Q9C7X2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C7X2", "locus": {} } ], "crossref": [ { "id": "AT1G56460", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G56460", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd23021", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23021", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "842099", "url": "https://www.ncbi.nlm.nih.gov/gene/842099", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006880", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006880", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007529", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007529", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029523", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029523", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G56460", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G56460", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR21561", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21561", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21561:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21561:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04438", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04438", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04795", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04795", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G56460", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G56460", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I548", "url": "https://www.uniprot.org/uniprotkb/F4I548", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I548-1", "url": "https://www.uniprot.org/uniprotkb/F4I548-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C7X2", "url": "https://www.uniprot.org/uniprotkb/Q9C7X2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C7X2-1", "url": "https://www.uniprot.org/uniprotkb/Q9C7X2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9C7X2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7X2" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "Q9C7X2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7X2" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9C7X2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7X2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9C7X2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7X2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": 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"title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9C7X2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7X2" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I548", "url": "https://www.uniprot.org/uniprotkb/F4I548" } ], "reference": [ { "type": "PubMed", 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983, "header": "tr|Q9FLL5-1|Q9FLL5_ARATH Isoform 1 of Myosin heavy chain-related protein OS=Arabidopsis thaliana OX=3702 GN=MEE6.21 PE=1 SV=1 CANONICAL=Q9FLL5-1" }, "isoforms": [ { "isoform_ac": "F4JWY3-1", "url": "https://www.uniprot.org/uniprotkb/F4JWY3/entry", "sequence": { "sequence": 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"header": "tr|F4JWY3-1|Q9FLL5_ARATH Computationally mapped isoform of Myosin heavy chain-related protein OS=Arabidopsis thaliana OX=3702 GN=MEE6.21 PE=1 SV=1 CANONICAL=Q9FLL5-1" }, "locus": { "chromosome": "5", "start_pos": 16468344, "end_pos": 16472810, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G41140.2", "url": "https://www.ensemblgenomes.org/id/AT5G41140.2" }, { "database": "Ensembl Peptide", "id": "AT5G41140.2", "url": "https://www.ensemblgenomes.org/id/AT5G41140.2" } ] } }, { "isoform_ac": "Q9FLL5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLL5/entry", "sequence": { "sequence": "MFKSSRWRSEKSNKIKIVFKLQFHATQVTQLKAEGLTISVVPGDVGKSTGKAEKAMVLDGHCRWESPVYETVKFLQDVKTGKVNQRIYHLVMSTTGSTKSGVVGETSIDFADYVDAIKTCNVSLPLQNSNSKAMLHVAIQRQLENADPQRVVKESDSLVKRSRGQDLKSHLSIEADESHKSDSQEEGPFGKASRITELRRRASIESDSTLSSFDSVSELDTLGEVEIRGDHIQQNHSTMHHHSVRNVYEEPHISESEWSGSSDQGISTDDSMNSSNDTIPRDTTRTSSDNEVDKLKAELGALARRTDLSELELQSLRKQIVKETKRSQDLLREVTSLKQERDLLKADNESNKASDKRKEEAKIRNKLQLEGRDPHVLLEETREELDYEKDLNSNLRLQLQKTQESNTELILAVQDLEAMEGQRTKKTVDLPGPRTCERNTEESRRMSCTSETDDDEDQKALDELVKGHMDAKEAHVLERRITDLYNEIEIYKRDKEDLEIQVEQLSLDYEILKQENHDISYKLEQSQVQEQLKMQYECSSSLVNVNELENHVESLEAKLKKQYKECSESLYRIKELETQIKGMEEELEKQAQIFEGDIEAVTRAKVEQEQRAIEAEEALRKTRWKNASVAGKIQDEFKRISEQMSSTLAANEKVTMKAMTETRELRMQKRQLEELLMNANDELRVNRVEYEAKLNELSGKTDLKTKEMKRMSADLEYQKRQKEDVNADLTHEITRRKDEIEILRLDLEETRKSSMETEASLSEELQRIIDEKEAVITALKSQLETAIAPCDNLKHSLSNNESEIENLRKQVVQVRSELEKKEEEMANLENREASADNITKTEQRSNEDRIKQLEGQIKLKENALEASSKIFIEKEKDLKNRIEELQTKLNEVSQNSQETDETLQGPEAIAMQYTEVLPLSKSDNLQDLVNEVASLREQNGLMETELKEMQERYSEISLRFAEVEGERQQLVMTVRYLKNAKKR", "length": 983, "header": "tr|Q9FLL5-1|Q9FLL5_ARATH Isoform 1 of Myosin heavy chain-related protein OS=Arabidopsis thaliana OX=3702 GN=MEE6.21 PE=1 SV=1 CANONICAL=Q9FLL5-1" }, "locus": { "chromosome": "5", "start_pos": 16468327, "end_pos": 16472810, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G41140.1", "url": "https://www.ensemblgenomes.org/id/AT5G41140.1" }, { "database": "Ensembl Peptide", "id": "AT5G41140.1", "url": "https://www.ensemblgenomes.org/id/AT5G41140.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 157, "end_pos": 157, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLL5" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser157" }, { "start_pos": 887, "end_pos": 887, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLL5" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr887" }, { "start_pos": 922, "end_pos": 922, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLL5" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser922" }, { "start_pos": 934, "end_pos": 934, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLL5" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser934" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JWY3", "url": "https://www.uniprot.org/uniprotkb/F4JWY3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FLL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLL5" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JWY3", "url": "https://www.uniprot.org/uniprotkb/F4JWY3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9FLL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLL5" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "pathway": [ { "id": "ath:AT5G41140", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41140", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", 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"https://www.ensemblgenomes.org/id/AT5G42840.2" }, { "database": "Ensembl Peptide", "id": "AT5G42840.2", "url": "https://www.ensemblgenomes.org/id/AT5G42840.2" } ] } }, { "isoform_ac": "Q9FMN5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMN5/entry", "sequence": { "sequence": "MSLYFEGHEHHVSIIKHRDGLECDACDRSFGDVISCGECKFTVHRKCVFMFDIQEIFDHPSHDGHCLKLLTTGAPDDTDQKCHLCGKKTKRLLYHCSDCKLNVDIDCIIDYICARSPLKLPWHDHPLIKVDLGANMPCDFCNESGIDYCCPRCRFMIHERCASVFDSPEITHPSHVRHPLKLRSNGAPDYTNLNCHICGDATGNLLYHCDICKFNLNMRCAIREPTPVALSNMKVHEHTLTLMPRLISFVCDACGMKGDRAPYVCVQCDFMIFHQECAKLPRVIHVNHHDHRVSYKYPLGPGEWRCGVCWEEIDWSYGAYSCSLCPNYAMHSLCATRKDVWDGRELDGVLEEIEDIEPFKRNDDNTITHFTHEHNLSKDGITLKKSILCVACVCPIGTDTFYNCSESSCSFVLHETCANISKKKRHFLSPVPLVLCLQNQRNTETCNACQQVFCKGFIYSSFPKTVYREKFYDLQCSSITVPFFHGSHDHHLLFLKLGRGNVKTCECCGIVQKEYAIGCTKCNYFLDFRCATLPLTVRLPRYDDHPLTLCYGDEKASGKCWCDICERETNPKSWFYTCKDCGVTFHIFCVVWDIRFSKQGETIRDGVELLPNNTSSRPLCKNCQCRCLGPFFVKDYDNICYCSYYCYARLHSLRYIWSKFRCPPWISEPST", "length": 671, "header": "tr|Q9FMN5-1|Q9FMN5_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN=MBD2.3 PE=1 SV=1 CANONICAL=Q9FMN5-1" }, "locus": { "chromosome": "5", "start_pos": 17179073, "end_pos": 17181365, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G42840.1", "url": "https://www.ensemblgenomes.org/id/AT5G42840.1" }, { "database": "Ensembl Peptide", "id": "AT5G42840.1", "url": "https://www.ensemblgenomes.org/id/AT5G42840.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K343", "url": "https://www.uniprot.org/uniprotkb/F4K343" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K343", "url": "https://www.uniprot.org/uniprotkb/F4K343" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G42840", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G42840", 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"https://www.uniprot.org/uniprotkb/F4K4X9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K4X9-1", "url": "https://www.uniprot.org/uniprotkb/F4K4X9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FM77", "url": "https://www.uniprot.org/uniprotkb/Q9FM77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FM77-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM77-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGIALVLDLLKKSQSKNTLHSSSFYSASAAAVSAAASAPFASRFLFGSFEPRVAYCDAAAAIDDDYLGAIRKMSADVLQRQPLAYISRSKEYNIQPKPVLSAFEFRALAMTTVRSLLMFYLPLLEPKTASEDDDDFLNNAAEENRHTDLIVPLKKSAKQIARETTVVTTRRVLERLALSYVSQRMAWKLLKDVPQSALRKAQRGLPTHVYIFKVSQTTLRGHFLGIAASWVVQVGIEIYRCVFPNVKPEEEEEEEKVEISQQAKDLGNKVVGITVRCGASLVFAAIGAGICSCLIRPSTGQWIGCALGDLAGPMVVSVCLQKTLQADY", "length": 329, "header": "tr|Q9FM77-1|Q9FM77_ARATH Isoform 1 of Isopentenyl-diphosphate delta-isomerase OS=Arabidopsis thaliana OX=3702 GN=MDF20.5 PE=1 SV=1 CANONICAL=Q9FM77-1" }, "isoforms": [ { "isoform_ac": "F4K4X9-1", "url": "https://www.uniprot.org/uniprotkb/F4K4X9/entry", "sequence": { "sequence": "MAGIALVLDLLKKSQSKNTLHSSSFYSASAAAVSAAASAPFASRFLFGSFEPRVAYCDAAAAIDDDYLGAIRKMSADVLQRQPLAYISRSKEYNIQPKPVLSAFEFRALAMTTVRSLLMFYLPLLEPKTASEDDDDFLNNAAEENRHTDLIVPLKKSAKQIARETTVVTTRRVLERLALSYVSQRMAWKLLKDVPQSALRKAQRGLPTHVYIFKVSQTTLRGIIKHFGFSTLRDPPIKCSFFFQIRHCLVLLKPICMFCLWLCLCRSLPGNRSIMGSSSRH", "length": 281, "header": "tr|F4K4X9-1|Q9FM77_ARATH Computationally mapped isoform of Isopentenyl-diphosphate delta-isomerase OS=Arabidopsis thaliana OX=3702 GN=MDF20.5 PE=1 SV=1 CANONICAL=Q9FM77-1" }, "locus": { "chromosome": "5", "start_pos": 22525807, "end_pos": 22528048, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G55610.2", "url": "https://www.ensemblgenomes.org/id/AT5G55610.2" }, { "database": "Ensembl Peptide", "id": "AT5G55610.2", "url": "https://www.ensemblgenomes.org/id/AT5G55610.2" } ] } }, { "isoform_ac": "Q9FM77-1", 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"keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K4X9", "url": "https://www.uniprot.org/uniprotkb/F4K4X9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K4X9", "url": "https://www.uniprot.org/uniprotkb/F4K4X9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G55610", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G55610", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FM77", "url": "https://www.uniprot.org/uniprotkb/Q9FM77" } ], "pmid": "" }, { "name": "plastid", "id": "GO:0009536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009536", "evidence": [ { "database": "UniProtKB", "id": "Q9FM77", "url": 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"AT5G22320.1", "url": "https://www.ensemblgenomes.org/id/AT5G22320.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 275, "end_pos": 275, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMS0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMS0" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr275" }, { "start_pos": 393, "end_pos": 393, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMS0", "url": 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T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K9U4", "url": "https://www.uniprot.org/uniprotkb/F4K9U4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9FMS0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMS0" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. 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Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C763", "url": "https://www.uniprot.org/uniprotkb/Q9C763" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C763", "url": "https://www.uniprot.org/uniprotkb/Q9C763" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G42190", 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], "protein_names": [ { "name": "Son of sevenless protein", "type": "synonym", "evidence": [ { "id": "Q9C794", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C794/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C794", "url": "https://www.uniprot.org/uniprotkb/Q9C794" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C794", "locus": {} } ], "crossref": [ { "id": "843275", "url": "https://www.ncbi.nlm.nih.gov/gene/843275", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9C794", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9C794*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "ath:AT1G69430", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G69430", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YFSCRSF", "url": "https://omabrowser.org/oma/group/YFSCRSF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9C794", "url": "https://www.orthodb.org/?gene=Q9C794", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33133", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33133", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33133:SF58", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33133:SF58", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT1G69430", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G69430", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C794", "url": "https://www.uniprot.org/uniprotkb/Q9C794", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C794-1", "url": "https://www.uniprot.org/uniprotkb/Q9C794-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEMGLSGMMNHGGSNSKLRKFEIESSSSSPSSSSDHKFHSMNALEILRETVRILRYNLGAFMLIALLLICPVSAILLPNLLVDQSVVNSLTVRLLLVSKSSGLPLLPFVRNSCQKFSETAVSSAMCFPLFITLSLLSRAAVVYSVDCTYSRKKVVVTKFVVIMQRLWKRLVITYLWICTVIVVCLTSFCVFLVAVCSSFYVLGFSPDFNAYGAILVGLVFSVVFANAIIICNTTIVISILEDVSGPGALVRASDLIKGQTQVGLLIFLGSTIGLTFVEGLFEHRVKSLSYGDGSSRLWEGPLLVVMYSFVVLIDTMMSAVFYFSCRSYSMEAVEALEASGEIVSQDLSLL", "length": 350, "header": "tr|Q9C794-1|Q9C794_ARATH Isoform 1 of Son of sevenless protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C794-1" }, "isoforms": [ { "isoform_ac": "Q9C794-1", "url": "https://www.uniprot.org/uniprotkb/Q9C794/entry", "sequence": { "sequence": "MEMGLSGMMNHGGSNSKLRKFEIESSSSSPSSSSDHKFHSMNALEILRETVRILRYNLGAFMLIALLLICPVSAILLPNLLVDQSVVNSLTVRLLLVSKSSGLPLLPFVRNSCQKFSETAVSSAMCFPLFITLSLLSRAAVVYSVDCTYSRKKVVVTKFVVIMQRLWKRLVITYLWICTVIVVCLTSFCVFLVAVCSSFYVLGFSPDFNAYGAILVGLVFSVVFANAIIICNTTIVISILEDVSGPGALVRASDLIKGQTQVGLLIFLGSTIGLTFVEGLFEHRVKSLSYGDGSSRLWEGPLLVVMYSFVVLIDTMMSAVFYFSCRSYSMEAVEALEASGEIVSQDLSLL", "length": 350, "header": "tr|Q9C794-1|Q9C794_ARATH Isoform 1 of Son of sevenless protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C794-1" }, "locus": { "chromosome": "1", "start_pos": 26097729, "end_pos": 26099388, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G69430.1", "url": "https://www.ensemblgenomes.org/id/AT1G69430.1" }, { "database": "Ensembl Peptide", "id": "AT1G69430.1", "url": "https://www.ensemblgenomes.org/id/AT1G69430.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 100, "end_pos": 100, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C794" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser100" }, { "start_pos": 307, "end_pos": 307, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C794" } ], "site_lbl": "Tyr307" }, { "start_pos": 318, "end_pos": 318, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C794" } ], "site_lbl": "Ser318" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C794", "url": "https://www.uniprot.org/uniprotkb/Q9C794" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9C794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C794" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C794", "url": "https://www.uniprot.org/uniprotkb/Q9C794" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G69430", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G69430", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "Q9C794", "url": "https://www.uniprot.org/uniprotkb/Q9C794" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 232, "end_pos": 234, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 100, 307, 318 ], "sequon_annotation_sites": [ { "start_pos": 232, "end_pos": 234 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C7A5-1", "uniprot_ac": "Q9C7A5", "uniprot_id": "Q9C7A5_ARATH", "mass": { "chemical_mass": 27497.0, "monoisotopic_mass": 27497.0 }, "refseq": { "ac": "NP_187849", "name": "Polynucleotidyl transferase, ribonuclease H-like superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187849" }, "gene_names": [], "protein_names": [ { "name": "Polynucleotidyl transferase, ribonuclease H-like superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_187849", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187849" }, { "id": "Q9C7A5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C7A5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C7A5", "url": "https://www.uniprot.org/uniprotkb/Q9C7A5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C7A5", "locus": {} } ], "crossref": [ { "id": "cd06141", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06141", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "820422", "url": "https://www.ncbi.nlm.nih.gov/gene/820422", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002562", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002562", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G12430", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12430", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VQWTPSC", "url": "https://omabrowser.org/oma/group/VQWTPSC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13620", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13620", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13620:SF59", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13620:SF59", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_187849", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187849", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G12430", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G12430", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C7A5", "url": "https://www.uniprot.org/uniprotkb/Q9C7A5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C7A5-1", "url": "https://www.uniprot.org/uniprotkb/Q9C7A5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPTIRTIGTYATQQRYLVDFFGEEFIVIVTPDPSVIGQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRYRSDSPPVRYRSDSPRVRRRFDPPADTLQLCVGNRCIIIQLSHCERVPQVLRNFLADRDYTFVGIWNSQDAGKLKRSKHELEIAVLLDLRKFVSDSSGRTMKRCSFEKIVEENLGHSGVRLDRKVSRSDWRVYDLRYVQILQASIDVYACCKLAILDHLWEY", "length": 238, "header": "tr|Q9C7A5-1|Q9C7A5_ARATH Isoform 1 of Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C7A5-1" }, "isoforms": [ { "isoform_ac": "Q9C7A5-1", "url": "https://www.uniprot.org/uniprotkb/Q9C7A5/entry", "sequence": { "sequence": "MAPTIRTIGTYATQQRYLVDFFGEEFIVIVTPDPSVIGQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRYRSDSPPVRYRSDSPRVRRRFDPPADTLQLCVGNRCIIIQLSHCERVPQVLRNFLADRDYTFVGIWNSQDAGKLKRSKHELEIAVLLDLRKFVSDSSGRTMKRCSFEKIVEENLGHSGVRLDRKVSRSDWRVYDLRYVQILQASIDVYACCKLAILDHLWEY", "length": 238, "header": "tr|Q9C7A5-1|Q9C7A5_ARATH Isoform 1 of Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C7A5-1" }, "locus": { "chromosome": "3", "start_pos": 3949405, "end_pos": 3950430, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12430.1", "url": "https://www.ensemblgenomes.org/id/AT3G12430.1" }, { "database": "Ensembl Peptide", "id": "AT3G12430.1", "url": "https://www.ensemblgenomes.org/id/AT3G12430.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, 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J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C7H3", "url": "https://www.uniprot.org/uniprotkb/Q9C7H3" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9C7H3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7H3" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9C7H3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C7H3" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid 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"MSSPVINQDMIQEFLSYLPASKIGKFRLLNKECNKRSYESWFVNLNLLRTNRISGYFIQHYIVKGHELRTSFVHERSDLQNNGVSIDFLPPGMIKIEACDASHGILLCVKYTKPSRGYIVFKPTTKQYQVIPKPEVKGWDMSLGLAVIGLNPFRYKIQRLSQSRRMCMSRGIYHLNHRTFMCEVFDSDSFTWKRLENLRLPKTDRLIFSNPIQVSGFLHWISRNNNVIRFCLKTETWSFFHTPNSDVFSGLVRYEGKLGAIRQWTNKDQEDVHELWVLKSSFEKSWVKVKDIKSIGVDLITWTPSNDVVLFRSSDRGCLYNINAEKLNLVYAKKEGSDCSFVCFPFCSDYERVDLNGRSNGPTL", "length": 364, "header": "tr|Q9C7V3-1|Q9C7V3_ARATH Isoform 1 of F-box protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C7V3-1" }, "isoforms": [ { "isoform_ac": "Q9C7V3-1", "url": "https://www.uniprot.org/uniprotkb/Q9C7V3/entry", "sequence": { "sequence": 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Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C7V3", "url": "https://www.uniprot.org/uniprotkb/Q9C7V3" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": 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Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9C836", "url": "https://www.uniprot.org/uniprotkb/Q9C836" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C836", "url": "https://www.uniprot.org/uniprotkb/Q9C836" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G66656", "name": "", "url": 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"length": 206, "header": "tr|Q9C842-1|Q9C842_ARATH Isoform 1 of General transcription factor 2-related zinc finger protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C842-1" }, "locus": { "chromosome": "1", "start_pos": 16077592, "end_pos": 16078567, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G42710.1", "url": "https://www.ensemblgenomes.org/id/AT1G42710.1" }, { "database": "Ensembl Peptide", "id": "AT1G42710.1", "url": "https://www.ensemblgenomes.org/id/AT1G42710.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 132, "end_pos": 132, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C842", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C842" } ], "site_lbl": "Ser132" }, { "start_pos": 134, "end_pos": 134, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { 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Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C842", "url": "https://www.uniprot.org/uniprotkb/Q9C842" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C842", "url": "https://www.uniprot.org/uniprotkb/Q9C842" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], 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"https://www.uniprot.org/uniprotkb/Q9C872-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAHIMWKVVLTNTNDKGAKRRELTPLRNTKRQKYGERQDTNASWLSDDRTIKPKLPSCGFRSMLPLNELLDVNGGFMVNGEVKIVAEVGVLEVVRKSDVLVETSLVMESIDVNGFQVLPSQVESVKSLFEKHPDIASKFRPKNPHLRTTSLNSLLSLTEILCHCQSPEELSIDDLANAYSTLICLTKAGFKLD", "length": 193, "header": "tr|Q9C872-1|Q9C872_ARATH Isoform 1 of Ubiquitin-specific protease family C19-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9C872-1" }, "isoforms": [ { "isoform_ac": "Q9C872-1", "url": "https://www.uniprot.org/uniprotkb/Q9C872/entry", "sequence": { "sequence": "MAHIMWKVVLTNTNDKGAKRRELTPLRNTKRQKYGERQDTNASWLSDDRTIKPKLPSCGFRSMLPLNELLDVNGGFMVNGEVKIVAEVGVLEVVRKSDVLVETSLVMESIDVNGFQVLPSQVESVKSLFEKHPDIASKFRPKNPHLRTTSLNSLLSLTEILCHCQSPEELSIDDLANAYSTLICLTKAGFKLD", "length": 193, "header": "tr|Q9C872-1|Q9C872_ARATH Isoform 1 of Ubiquitin-specific protease family C19-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 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"https://www.uniprot.org/uniprotkb/Q9C872" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "peptidase activity", "id": "GO:0008233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008233", "evidence": [ { "database": "UniProtKB", "id": "Q9C872", "url": "https://www.uniprot.org/uniprotkb/Q9C872" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 41, "end_pos": 43 } ] }, "class_list": [], 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"MSREKQGKRSGSNGTEKVLVAVKASREISKTAFVWALTHIVHPGDCITLIVVVTSYNAGRKLWTFPRFAGDCATGHWKLHSDPMSEIKSDLTDTCSQMILQLHDVYDPNKVNVRIKIVSGSPCGAVAAEAKKSQANWVVLDKHLKHEEKRCIDELQCNIVAMKRSEAKVLRLNLVGSSTKEPELASEKNKNRLLDSVKAVVTTTPMSSPEVETSFTGTEAWTSSVSSSDLGTSSPVFTAEVRKDETLVVKENESDSDSESENLSLPSLSKRFQPWISEYLSTHCVSMQESTRGDDKAVQVSTKKALLEKISKLDEGEEAAMSSKRKDLEEYSGTLRALSRNAPPVSPPLCSICQHKAPVFGKPPRFFSYKELELATNGFSRANFLAEGGFGSVHRGVLPEGQIVAVKQHKVASTQGDVEFCSEVEVLSCAQHRNVVMLIGFCIEDTRRLLVYEYICNGSLDSHLYGRHKDTLGWPARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDYEPLVGDFGLARWQPDGELGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLIELITGRKAMDIYRPKGQQCLTEWARSLLEEYAVEELVDPRLEKRYSETQVICMIHTASLCIRRDPHLRPRMSQVLRLLEGDMLMNEISGRFNGRLSTEKGLRDHN", "length": 676, "header": "tr|Q9C890-1|Q9C890_ARATH Isoform 1 of Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C890-1" }, "isoforms": [ { "isoform_ac": "Q9C890-1", "url": "https://www.uniprot.org/uniprotkb/Q9C890/entry", 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"strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G55200.2", "url": "https://www.ensemblgenomes.org/id/AT1G55200.2" }, { "database": "Ensembl Peptide", "id": "AT1G55200.2", "url": "https://www.ensemblgenomes.org/id/AT1G55200.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 133, "end_pos": 133, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C890", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C890" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser133" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C890", "url": "https://www.uniprot.org/uniprotkb/Q9C890" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9C890", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C890" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C890", "url": "https://www.uniprot.org/uniprotkb/Q9C890" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G55200", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G55200", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein kinase activity", "id": "GO:0004672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004672", "evidence": [ { "database": "UniProtKB", "id": "Q9C890", "url": "https://www.uniprot.org/uniprotkb/Q9C890" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "Q9C890", "url": "https://www.uniprot.org/uniprotkb/Q9C890" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": 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"evidence": [ { "database": "UniProtKB", "id": "Q9C890", "url": "https://www.uniprot.org/uniprotkb/Q9C890" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 457, "end_pos": 459, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9C890", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C890" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 379, "end_pos": 655, "start_aa": "Phe", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 133 ], "sequon_annotation_sites": [ { "start_pos": 13, "end_pos": 15 }, { "start_pos": 252, "end_pos": 254 }, { "start_pos": 262, "end_pos": 264 }, { "start_pos": 457, "end_pos": 459 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C8I1", "url": "https://www.uniprot.org/uniprotkb/Q9C8I1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C8I1", "url": "https://www.uniprot.org/uniprotkb/Q9C8I1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G51730", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G51730", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1V7T1-1", "protein_name": "RWD domain-containing protein 1", "gene_name": "RWDD1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQLNLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKQLFHGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAGKNKLSGRQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNPADPESDLTD", "length": 243 }, "evidence": [ { "id": "Q9C8I1", "url": "https://omabrowser.org/oma/group/Q9C8I1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1Q5G7-1", "protein_name": "RWD domain-containing protein 1", "gene_name": "rwdd1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTDYGEEQRNELEAIESIYPDSFTVLSDAPTSFTITVTSDTGENEETLELTLKFTYVEKYPDEPPLWEIFSQENLEDSDAEEILTLLKQQAEENLGMVMIFTLVTAVQEKLNEIIDQIKSRREEEKQRKQKEAEEAEKRAFQGTVVTIETFLSWKAKFEAEMIELKKKRQKEEEQSGKKKLTGKQLFETDHNLDTSDIQFLEDGGNSVEVDESLFQEMDDLDLDEDDPDFDPLDLGSDED", "length": 240 }, "evidence": [ { "id": "Q9C8I1", "url": "https://omabrowser.org/oma/group/Q9C8I1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q03768-1", "protein_name": "Protein GIR2", "gene_name": "GIR2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDYKEEQKQELEVLESIYPDELRIINDEYPKIKFEVAIKLELDTGDSTSVLTKEHTIIAEFKLPENYPDEPCLISLEAQEVALNDNEEDNEEDEDEVEYDDHGNKVLKKFENLPDLISFKGYLPELTVQLESQIETDMLLGMQMCFALISSIKERCEQWYSEQLNKLEKQYELEAQEREKKEQAKFHGTKVTRESYLEWRSKFRQELKLDERDQVRRMKAHHGKLTGKQMFEQGVVGTGDEYMEEDDASVDDVAKGLAKTEIANQ", "length": 265 }, "evidence": [ { "id": "Q9C8I1", "url": "https://omabrowser.org/oma/group/Q9C8I1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q556K0-1", "protein_name": "RWD domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSEEKDMEVEALSAIYMDHFNSIDSDHVQITLLPNPGGDEPNFVAIILDIIFSVDYPNSIPKIDLIPHLGLEKEDILELQGKVIQEAENNIGMSMIFILCGLIKEWVDENNIDPDLEESEQSSSSEAEDDERPFEGTPVTEEAFLAWRKKFIEETKPFKKEKQLNKLTGRQLFEQDTSLNASDSRLMEEGEEASNITVASIKPKLEEVAAQVDWSLFADEEIKDVDYEEEE", "length": 231 }, "evidence": [ { "id": "Q9C8I1", "url": "https://omabrowser.org/oma/group/Q9C8I1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q99ND9-1", "protein_name": "RWD domain-containing protein 1", "gene_name": "Rwdd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAGKNKLSGKQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDGEDDPDYNPVAPGSDSSD", "length": 243 }, "evidence": [ { "id": "Q9C8I1", "url": "https://omabrowser.org/oma/group/Q9C8I1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9CQK7-1", "protein_name": "RWD domain-containing protein 1", "gene_name": "Rwdd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTDYGEEQRNELEALESIYPDSFTVLSESPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDETPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAGKNKLSGKQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDGEDDPDYNPVAPGSDSSD", "length": 243 }, "evidence": [ { "id": "Q9C8I1", "url": "https://omabrowser.org/oma/group/Q9C8I1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H446-1", "protein_name": "RWD domain-containing protein 1", "gene_name": "RWDD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAGKNKLSGKQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNPADPESDSAD", "length": 243 }, "evidence": [ { "id": "Q9C8I1", "url": "https://omabrowser.org/oma/group/Q9C8I1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VCB9-1", "protein_name": "RWD domain-containing protein", "gene_name": "Dmel\\CG5515", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSRNYKEDQTNEVEALDSIYCGDMEILATEPHHKFQIPIATEEYSSEEPEKGLACKLVFTFTATYPDGAPVVEIEEPENFEDMFETRLLEHLQKTIEENLGMEMIFSLVSSAQEWLNERWDEHKFHQEELREQKLREIEEEERKKFEGTRVTVESFLKWKLEFEESTGIAAKREKNNVSKKQTGRELFMCDNTLNDSDIKFLLEAGENIENVKIDETLFQDIGELDLDDDDDEDWVPGADDDDD", "length": 244 }, "evidence": [ { "id": "Q9C8I1", "url": "https://omabrowser.org/oma/group/Q9C8I1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9C8I1", "url": "https://www.uniprot.org/uniprotkb/Q9C8I1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9C8I1", "url": "https://www.uniprot.org/uniprotkb/Q9C8I1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "Q9C8I1", "url": "https://www.uniprot.org/uniprotkb/Q9C8I1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9C8I1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I1" }, { "id": "PS50908", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50908" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RWD", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 125, "start_aa": "Met", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 34, "end_pos": 36 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C8K7-1", "uniprot_ac": "Q9C8K7", "uniprot_id": "FBK21_ARATH", "mass": { "chemical_mass": 53167.0, "monoisotopic_mass": 53167.0 }, "refseq": {}, "gene_names": [ { "name": "F5D21.4", "type": "synonym", "evidence": [ { "id": "Q9C8K7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8K7" } ] } ], "protein_names": [ { "name": "F-box/kelch-repeat protein At1g51550", "type": "recommended", "evidence": [ { "id": "Q9C8K7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8K7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8K7", "url": "https://www.uniprot.org/uniprotkb/Q9C8K7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C8K7", "locus": {} } ], "crossref": [ { "id": "Q9C8K7", "url": "https://alphafold.ebi.ac.uk/entry/Q9C8K7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G51550", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G51550", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "841580", "url": "https://www.ncbi.nlm.nih.gov/gene/841580", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G51550", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G51550", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YRHRKND", "url": "https://omabrowser.org/oma/group/YRHRKND/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9C8K7", "url": "https://www.orthodb.org/?gene=Q9C8K7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46175", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46175", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46175:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46175:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9C8K7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9C8K7", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT1G51550", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G51550", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C8K7", "url": "https://www.uniprot.org/uniprotkb/Q9C8K7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C8K7-1", "url": "https://www.uniprot.org/uniprotkb/Q9C8K7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAESTRNSSPPSTSQSSSPIINLPDDHLLTILLLLPVDSILSFSMTCKRYKSLACSDSLWEALCEREWGPTSVDALKLSSLRDGFSWMLMFQRVYKMDSVCCHKISDPDDDDEESSSFPIPRASHSLNFVNDHLVLFGGGCQGGRHLDDTWTSYVDKSNQSILKWKKVKSGTPSGRFGHTCIVIGEYLLLFGGINDRGERLNDTWIGQVFCHEGLSWKLLNVGSLQRPRPPPRGAHSACCIAEKKMVVHGGIGLNGVRLGDTWILELSEDFSSGTWHMVESPQLPPPRSGHTLTCIRENQVVLFGGRGLGYDVLDDVWILDIQEPCEEKWIQIFYDFQDVPEYASLPRVGHSATLVLGGRILIYGGEDSYRHRKDDFWVLDVKTIPSSGLKPQGLSLNGSSVWKKLDRISYGPKSRSFHRACADCSGRFLYVFGGMVDGLLQPAASSGLRFDGELFMVELVLGFSDLDHQQRPGKSM", "length": 478, "header": "sp|Q9C8K7-1|FBK21_ARATH Isoform 1 of F-box/kelch-repeat protein At1g51550 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9C8K7-1" }, "isoforms": [ { "isoform_ac": "Q9C8K7-1", "url": 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"AT1G36050.2", "url": "https://www.ensemblgenomes.org/id/AT1G36050.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 111, "end_pos": 111, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I1K2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1K2" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "iPTMnet", "id": "Q9C8W1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8W1" } ], "site_lbl": "Ser111" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C8W1", "url": "https://www.uniprot.org/uniprotkb/Q9C8W1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "F4I1K2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1K2" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C8W1", "url": "https://www.uniprot.org/uniprotkb/Q9C8W1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G36050", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G36050", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287A0W6-1", "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein", "gene_name": "ERGIC3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEALGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGIPVSSEAERHELGKVEIKVFDPDSLDPDRCESCYGAETEDIKCCNSCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHAVEIHDLQSFGLDNINMTHYIQHLSFGEDYPGIVNPLDRTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVASGLMGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT", "length": 388 }, "evidence": [ { "id": "Q9C8W1", "url": "https://omabrowser.org/oma/group/Q9C8W1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "D3ZU83-1", "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein", "gene_name": "Ergic3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAGLIAFEKASEGWSPTYALLRLRKTARGVTPTSGRKREAGGAGRLVSPFRPVPMEALGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKKRLDKDGIPVSSEAERHELGKVEVTVFDPDSLDPNRCESCYGAESEDIKCCNSCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHAVEIHDLQSFGLDNINMTHYIKHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT", "length": 443 }, "evidence": [ { "id": "Q9C8W1", "url": "https://omabrowser.org/oma/group/Q9C8W1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HAQ9-1", "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein", "gene_name": "Ergic3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEALGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKSRGDKLKINIDVIFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKKRLDKDGIPVSSEAERHELGKVEVAVFDPNSLDPNRCESCYGAESDDIKCCNSCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHYIKHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT", "length": 383 }, "evidence": [ { "id": "Q9C8W1", "url": "https://omabrowser.org/oma/group/Q9C8W1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P39727-1", "protein_name": "ER-derived vesicles protein ERV46", "gene_name": "ERV46", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MKRSTLLSLDAFAKTEEDVRVRTRAGGLITLSCILTTLFLLVNEWGQFNSVVTRPQLVVDRDRHAKLELNMDVTFPSMPCDLVNLDIMDDSGEMQLDILDAGFTMSRLNSEGRPVGDATELHVGGNGDGTAPVNNDPNYCGPCYGAKDQSQNENLAQEEKVCCQDCDAVRSAYLEAGWAFFDGKNIEQCEREGYVSKINEHLNEGCRIKGSAQINRIQGNLHFAPGKPYQNAYGHFHDTSLYDKTSNLNFNHIINHLSFGKPIQSHSKLLGNDKRHGGAVVATSPLDGRQVFPDRNTHFHQFSYFAKIVPTRYEYLDNVVIETAQFSATFHSRPLAGGRDKDHPNTLHVRGGIPGMFVFFEMSPLKVINKEQHGQTWSGFILNCITSIGGVLAVGTVMDKLFYKAQRSIWGKKSQ", "length": 415 }, "evidence": [ { "id": "Q9C8W1", "url": "https://omabrowser.org/oma/group/Q9C8W1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54DW2-1", "protein_name": "Probable endoplasmic reticulum-Golgi intermediate compartment protein 3", "gene_name": "ergic3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLISQLKKFDAYPKTVDDFRVKTYTGAIVSIIGGVFILWLFFSQVTLYFSTDIHHELFVDTTRGEKLKINMDITFHHLPCAYLSLDAMDVSGEHQFDVAHNIFKKRLSPTGQPIIEAPPIREEEINKKESVKDNNDVVGCGSCYGAEDPSKGIGCCNTCEEVRVAYSKKGWGLDPSGIPQCIREGFTKNLVEQNGEGCQVYGFILVNKVAGNFHFAPGKSFQQHHMHVHDLQPFKDGSFNVSHTINRLSFGNDFPGIKNPLDDVTKTEMVGVGMFQYFVKVVPTIYEGLNGNRIATNQYSVTEHYRLLAKKGEEPSGLPGLFFMYDLSPIMMKVSERGKSFASFLTNVCAIIGGVFTVFGIFDSFIYYSTKNLQKKIDLGKTF", "length": 383 }, "evidence": [ { "id": "Q9C8W1", "url": "https://omabrowser.org/oma/group/Q9C8W1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5EAE0-1", "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein 3", "gene_name": "ERGIC3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEALGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKSRGDKLKININVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKKRLDKDGFPVSSEAERHELGKVEVKVFDPDSLDPDRCESCYGAEMEDIKCCNSCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHYIRHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLMGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT", "length": 383 }, "evidence": [ { "id": "Q9C8W1", "url": "https://omabrowser.org/oma/group/Q9C8W1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q803I2-1", "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein 3", "gene_name": "ergic3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDALNKLKQFDAYPKTLEDFRIKTCGGATVTIISGLIMLILFFSELQYYLTKEVHPELFVDTSRGDKLRINIDVIFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGQPVTTEAEKHDLGKEEEGVFDPSTLDPDRCESCYGAETDDLKCCNTCDDVREAYRRRGWAFKTPDTIEQCKREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHFIKHLSFGKDYPGIVNPLDDTNVAAPQASMMYQYFVKIVPTIYVKGDGEVVKTNQFSVTRHEKIANGLIGDQGLPGVFVLYELSPMMVKFTEKQRSFTHFLTGVCAIIGGVFTVAGLIDSLIYHSARAIQKKIELGKAS", "length": 383 }, "evidence": [ { "id": "Q9C8W1", "url": "https://omabrowser.org/oma/group/Q9C8W1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9CQE7-1", "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein 3", "gene_name": "Ergic3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEALGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKKRLDKDGVPVSSEAERHELGKVEVTVFDPNSLDPNRCESCYGAESEDIKCCNSCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHYIKHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT", "length": 383 }, "evidence": [ { "id": "Q9C8W1", "url": "https://omabrowser.org/oma/group/Q9C8W1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VUM3-1", "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein 3", "gene_name": "Dmel\\CG7011", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MKFADVLRRLDAYPRTLDDFSVRTVGGAAVTIISTSIISLLIFLEVLNYMQPTLNEELFVDTTRDHKLRINLDVTLHNLACNYISLDAMDSSGDTHLRVDHDVFKHRLDLNGEPLKETPIKEIVAVSPPNKNVTCGSCYGAEHNATHCCNTCEDVLDAYRLRKWTVAVDKIEQCKGKYKRSDEDAFKEGCRIQGHLEVNRMAGSFHFAPGKSFSIRQFHIHDFQFSNVKLSHTINHLSFGEKIEFAKTHPLDGLRVDVAETKSEMFNYYLKIVPTLYMRGNSDGEPIYTNQFSVTRYRKDLSDRERGMPGIFFSYELSPLMVKYAERHSSFGHFATNCCSIIGGVFTVAGILAVLLNNSWEAIQRKLEVGKLS", "length": 373 }, "evidence": [ { "id": "Q9C8W1", "url": "https://omabrowser.org/oma/group/Q9C8W1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y282-1", "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein 3", "gene_name": "ERGIC3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEALGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGIPVSSEAERHELGKVEVTVFDPDSLDPDRCESCYGAEAEDIKCCNTCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHYIQHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT", "length": 383 }, "evidence": [ { "id": "Q9C8W1", "url": "https://omabrowser.org/oma/group/Q9C8W1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "R4GJ83-1", "protein_name": "Endoplasmic reticulum-Golgi intermediate compartment protein", "gene_name": "ERGIC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MESLWRLKRFDAFPKTLEDFRVKTCGGALVTVVSGLIMVLLFFSELQYYLTKEVHPELYVDKSRGDKLKINIDVVFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKAGNRVTPEAERHELGKEEEKVFDPNSLDADRCESCYGAESEDIRCCNTCDDVREAYRRRGWAFKNPDTIEQCKREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHAVEIHDLQSFGLDNINMTHYIKHLSFGRDYPGIVNPLDGTDVTAQQASMMFQYFVKVVPTVYMKVDGEVVRTNQFSVTRHEKIANGLIGDQGLPGVFVLYELSPMMVKLTEKHRPFTHFLTGVCAIVGGIFTVAGFIDSLIYHSARAIQKKIELGKTI", "length": 388 }, "evidence": [ { "id": "Q9C8W1", "url": "https://omabrowser.org/oma/group/Q9C8W1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "Q9C8W1", "url": "https://www.uniprot.org/uniprotkb/Q9C8W1" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "Q9C8W1", "url": "https://www.uniprot.org/uniprotkb/Q9C8W1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "Q9C8W1", "url": "https://www.uniprot.org/uniprotkb/Q9C8W1" } ], "pmid": "" }, { "name": "plant-type vacuole", "id": "GO:0000325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000325", "evidence": [ { "database": "UniProtKB", "id": "Q9C8W1", "url": "https://www.uniprot.org/uniprotkb/Q9C8W1" } ], "pmid": "" }, { "name": "COPII-coated ER to Golgi transport vesicle", "id": "GO:0030134", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030134", "evidence": [ { "database": "UniProtKB", "id": "Q9C8W1", "url": "https://www.uniprot.org/uniprotkb/Q9C8W1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 245, "end_pos": 247, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9C8W1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8W1" }, { "id": "PF07970", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07970" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Endoplasmic reticulum vesicle transporter C-terminal", "eco_id": "ECO_0000259", "start_pos": 149, "end_pos": 366, "start_aa": "Cys", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "Q9C8W1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8W1" }, { "id": "PF13850", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Endoplasmic reticulum vesicle transporter N-terminal", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 97, "start_aa": "Leu", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 111 ], "sequon_annotation_sites": [ { "start_pos": 142, "end_pos": 144 }, { "start_pos": 245, "end_pos": 247 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"https://www.ebi.ac.uk/interpro/entry/IPR005123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044861", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044861", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050231", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050231", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G52790", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G52790", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NFMWPNG", "url": "https://omabrowser.org/oma/group/NFMWPNG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47990", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47990", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03171", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03171", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G52790", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G52790", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C939", "url": "https://www.uniprot.org/uniprotkb/Q9C939", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C939-1", "url": "https://www.uniprot.org/uniprotkb/Q9C939-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPKIPTLDFSREDLKPGTKYWESTRENIRQALEEYGCFIIDLKDKTPLDLLDRVFGSLVDLFDLPTQTKMKNKYDKPLNGYVGQIPALPLHESLGIDNATSLEATRSFTGLMWPQGNEHFSECLYKYAEFAAELDQMVTRMVFQSYNVEKYYDPYIESTTYLLRVLKNRAPNNENPTLGFVTHTDKSFTTILHQDQVNGLEMETREGERININLSSPSLFMVVAGDALMAWSNDRVWSPRHQVLVSGETDRYSLGMFAFNNGTLQVPEELIDHQHPLMYKPFDHLGLLRFYRTDTGYKSECPIKAYCGF", "length": 310, "header": "tr|Q9C939-1|Q9C939_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C939-1" }, "isoforms": [ { "isoform_ac": "Q9C939-1", "url": "https://www.uniprot.org/uniprotkb/Q9C939/entry", "sequence": { "sequence": "MSPKIPTLDFSREDLKPGTKYWESTRENIRQALEEYGCFIIDLKDKTPLDLLDRVFGSLVDLFDLPTQTKMKNKYDKPLNGYVGQIPALPLHESLGIDNATSLEATRSFTGLMWPQGNEHFSECLYKYAEFAAELDQMVTRMVFQSYNVEKYYDPYIESTTYLLRVLKNRAPNNENPTLGFVTHTDKSFTTILHQDQVNGLEMETREGERININLSSPSLFMVVAGDALMAWSNDRVWSPRHQVLVSGETDRYSLGMFAFNNGTLQVPEELIDHQHPLMYKPFDHLGLLRFYRTDTGYKSECPIKAYCGF", "length": 310, "header": "tr|Q9C939-1|Q9C939_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C939-1" }, "locus": { "chromosome": "1", "start_pos": 19662194, "end_pos": 19663301, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G52790.1", "url": "https://www.ensemblgenomes.org/id/AT1G52790.1" }, { "database": "Ensembl Peptide", "id": "AT1G52790.1", "url": "https://www.ensemblgenomes.org/id/AT1G52790.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C939", "url": "https://www.uniprot.org/uniprotkb/Q9C939" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C939", "url": "https://www.uniprot.org/uniprotkb/Q9C939" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G52790", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G52790", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9C939", "url": "https://www.uniprot.org/uniprotkb/Q9C939" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "Q9C939", "url": "https://www.uniprot.org/uniprotkb/Q9C939" } ], "pmid": "" }, { "name": "2-oxoglutarate-dependent dioxygenase activity", "id": "GO:0016706", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016706", "evidence": [ { "database": "UniProtKB", "id": "Q9C939", "url": "https://www.uniprot.org/uniprotkb/Q9C939" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9C939", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C939" }, { "id": "PS51471", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51471" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fe2OG dioxygenase", "eco_id": "ECO_0000259", "start_pos": 162, "end_pos": 263, "start_aa": "Tyr", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 214, "end_pos": 216 }, { "start_pos": 262, "end_pos": 264 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"chemical_mass": 50313.0, "monoisotopic_mass": 50313.0 }, "refseq": {}, "gene_names": [ { "name": "F14G24.4", "type": "synonym", "evidence": [ { "id": "Q9C941", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C941" } ] }, { "name": "F14G24_4", "type": "synonym", "evidence": [ { "id": "Q9C941", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C941" } ] } ], "protein_names": [ { "name": "Phototropic-responsive NPH3 family protein", "type": "synonym", "evidence": [ { "id": "Q9C941", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C941/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C941", "url": "https://www.uniprot.org/uniprotkb/Q9C941" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9C941", "locus": {} } ], "crossref": [ { "id": "AT1G52770", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G52770", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "841710", "url": "https://www.ncbi.nlm.nih.gov/gene/841710", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9C941", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9C941*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR027356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043454", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043454", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G52770", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G52770", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FAGLDNE", "url": "https://omabrowser.org/oma/group/FAGLDNE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32370", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32370", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03000", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03000", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G52770", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G52770", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C941", "url": "https://www.uniprot.org/uniprotkb/Q9C941", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C941-1", "url": "https://www.uniprot.org/uniprotkb/Q9C941-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKTSSPESATISTKSPSTSTGKMECSWFDDGCILGIDYFVKTIAGIKSKGVRPDLIGSIIVHYASQWLPDLSDIVLNSDDQQPQPQQQSESFSVTAFVMKKRSFVETLIGIIPPERDSVPCDFLLRLLRTANMVGADANYKAELEARISWQLDQASLKELMIPSFSHTCGTLLDVELMTRLVKKFAGLDNEGVKSGASLIKVAKLVDSYLAEAALDGDLTLSEFISLVEALPNHARVTEDGLYRAIDTYLKAHPNVTKQERKRLCGLIDSNKLSMEASLHAAQNDRLPVRTIIQVLFSEQAKLSHRSHNNIEWSGSSFSGVRSSPNPSGSHYSDSGPARCTSKREINVQQAEIRRLREDMAKLKCECEAMQTQLHKLVEKKGTCTSGNKGFFRWKKLGFRSGLSVSVVENTNGEEFGNNGEGENFEYVTQTPGNMMTKLVKGRTPSRWRKSMS", "length": 454, "header": "tr|Q9C941-1|Q9C941_ARATH Isoform 1 of Phototropic-responsive NPH3 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C941-1" }, "isoforms": [ { "isoform_ac": "Q9C941-1", "url": "https://www.uniprot.org/uniprotkb/Q9C941/entry", "sequence": { "sequence": "MDKTSSPESATISTKSPSTSTGKMECSWFDDGCILGIDYFVKTIAGIKSKGVRPDLIGSIIVHYASQWLPDLSDIVLNSDDQQPQPQQQSESFSVTAFVMKKRSFVETLIGIIPPERDSVPCDFLLRLLRTANMVGADANYKAELEARISWQLDQASLKELMIPSFSHTCGTLLDVELMTRLVKKFAGLDNEGVKSGASLIKVAKLVDSYLAEAALDGDLTLSEFISLVEALPNHARVTEDGLYRAIDTYLKAHPNVTKQERKRLCGLIDSNKLSMEASLHAAQNDRLPVRTIIQVLFSEQAKLSHRSHNNIEWSGSSFSGVRSSPNPSGSHYSDSGPARCTSKREINVQQAEIRRLREDMAKLKCECEAMQTQLHKLVEKKGTCTSGNKGFFRWKKLGFRSGLSVSVVENTNGEEFGNNGEGENFEYVTQTPGNMMTKLVKGRTPSRWRKSMS", "length": 454, "header": "tr|Q9C941-1|Q9C941_ARATH Isoform 1 of Phototropic-responsive NPH3 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C941-1" }, "locus": { "chromosome": "1", "start_pos": 19655831, "end_pos": 19657795, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G52770.1", "url": "https://www.ensemblgenomes.org/id/AT1G52770.1" }, { "database": "Ensembl Peptide", "id": "AT1G52770.1", "url": "https://www.ensemblgenomes.org/id/AT1G52770.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 11, "end_pos": 11, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C941", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C941" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Thr11" }, { "start_pos": 16, "end_pos": 16, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C941", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser16" }, { "start_pos": 325, "end_pos": 325, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C941", "url": 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"MGAEKKWLFTLFSVVFLSVFLLLLYSISAFTSKPFPSSIRHGAHYPPAFAYYITGGRGDNDRISRLLLAVYHPRNRYLIHLGAEATDAERLALLSDLKSVPAVNAFGNVDVLGKVDRLSENGASKIASTLHAVSILLKLDPTWNWFIELSALDYPLITQDDLSHVFASVNRSLNFIDHTSDLAWKESQRIKPIVVDPALYLARRTQLFTATEKRPTPDAFKVFTGSPWIVLSRPFLEYCIFGWDNLPRILLMYFNNVILSEECYFHTVICNAPEFSNTTVNGDLRYMIWDSPPKMEPHFLTISDFDQMAQSGAAFARQFKKDDPVLDMVDREILKRGRYRVTPGAWCSSHSSWWTDPCSEWDEVNIVKAGPQAKKLDETITNFLDDLNSQSNQCK", "length": 395, "header": "tr|Q9C9A1-1|Q9C9A1_ARATH Isoform 1 of Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C9A1-1" }, "locus": { "chromosome": "1", "start_pos": 26807183, "end_pos": 26809520, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G71070.1", "url": "https://www.ensemblgenomes.org/id/AT1G71070.1" }, { "database": "Ensembl Peptide", "id": "AT1G71070.1", "url": "https://www.ensemblgenomes.org/id/AT1G71070.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 342, "start_aa": "Thr", "end_pos": 342, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr342", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [ { "start_pos": 339, "end_pos": 339, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C9A1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C9A1" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Tyr339" }, { "start_pos": 348, "end_pos": 348, 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Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C9A1", "url": "https://www.uniprot.org/uniprotkb/Q9C9A1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9C9A1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C9A1" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C9A1", "url": "https://www.uniprot.org/uniprotkb/Q9C9A1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G71070", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G71070", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "Q9C9A1", "url": "https://www.uniprot.org/uniprotkb/Q9C9A1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "Q9C9A1", "url": "https://www.uniprot.org/uniprotkb/Q9C9A1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "glucuronosyltransferase activity", "id": "GO:0015020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015020", "evidence": [ { "database": "UniProtKB", "id": "Q9C9A1", "url": "https://www.uniprot.org/uniprotkb/Q9C9A1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 342 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 339, 348, 349 ], "sequon_annotation_sites": [ { "start_pos": 170, "end_pos": 172 }, { "start_pos": 277, "end_pos": 279 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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}, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9C9B4-1", "uniprot_ac": "Q9C9B4", "uniprot_id": "Q9C9B4_ARATH", "mass": { "chemical_mass": 70386.0, "monoisotopic_mass": 70386.0 }, "refseq": {}, "gene_names": [ { "name": "F2P9.20", 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"locus": {} } ], "crossref": [ { "id": "AT1G73930", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G73930", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "843730", "url": "https://www.ncbi.nlm.nih.gov/gene/843730", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024224", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024224", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G73930", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G73930", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EANLEHW", "url": "https://omabrowser.org/oma/group/EANLEHW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13677", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13677", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13677:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13677:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT1G73930", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G73930", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9C9B4", "url": "https://www.uniprot.org/uniprotkb/Q9C9B4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9C9B4-1", "url": "https://www.uniprot.org/uniprotkb/Q9C9B4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRSPSFSVKPELSIKPDPESLKRWIHAFCIMRFDLEQGQLLEECYPPDCLSQEEEIEVSFNSFPDSVSQHHNRSSIHDCIFFFRFRRPKKNTEERDGSERYLYGYVFNRQRHDERLKRGGEQKSVVILSHTPYSSVFRPLLQIIGPLYFDVGNKAIEHIAGYVSMWPAPVPGKLMELPIGNAMLKVNLPPAHSLPLENGILYEESASSMAPLLPTNQSVPQGLFHDADLFGIYRGLLLQLWTLWELLLIGEPILIIAPTPPQCSEAVACLVSLVAPLFCSVDFRPYFTIHDPGFARLNSLREGDTFPPMVLGVTNIFFLKALRNIPHVVSVGTPAPNSNRVAFTSRSAGKLSVKPEGLGVQQLSLRRFSPTNLLNAVKLRRDGPLCLMTEHKEAVWTTYSAVTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFQVNAPSDGSSPYVTPPALPSFGADEFLSNLSGRGVGKFLSKRMKSNWPDLYRRFLRGPNFSPWFQRRRAVAEQEQRRLWRLARMKTDMRQITSQMNELEAVDSFNAIEKHISEEVKSLESGGGADSEGTFQKLKKDLQAVFSVLPKDMQQLLLLNPQRASLLQDPSELQ", "length": 623, "header": "tr|Q9C9B4-1|Q9C9B4_ARATH Isoform 1 of Polarity axis stabilization protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C9B4-1" }, "isoforms": [ { "isoform_ac": "Q9C9B4-1", "url": "https://www.uniprot.org/uniprotkb/Q9C9B4/entry", "sequence": { "sequence": "MSRSPSFSVKPELSIKPDPESLKRWIHAFCIMRFDLEQGQLLEECYPPDCLSQEEEIEVSFNSFPDSVSQHHNRSSIHDCIFFFRFRRPKKNTEERDGSERYLYGYVFNRQRHDERLKRGGEQKSVVILSHTPYSSVFRPLLQIIGPLYFDVGNKAIEHIAGYVSMWPAPVPGKLMELPIGNAMLKVNLPPAHSLPLENGILYEESASSMAPLLPTNQSVPQGLFHDADLFGIYRGLLLQLWTLWELLLIGEPILIIAPTPPQCSEAVACLVSLVAPLFCSVDFRPYFTIHDPGFARLNSLREGDTFPPMVLGVTNIFFLKALRNIPHVVSVGTPAPNSNRVAFTSRSAGKLSVKPEGLGVQQLSLRRFSPTNLLNAVKLRRDGPLCLMTEHKEAVWTTYSAVTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFQVNAPSDGSSPYVTPPALPSFGADEFLSNLSGRGVGKFLSKRMKSNWPDLYRRFLRGPNFSPWFQRRRAVAEQEQRRLWRLARMKTDMRQITSQMNELEAVDSFNAIEKHISEEVKSLESGGGADSEGTFQKLKKDLQAVFSVLPKDMQQLLLLNPQRASLLQDPSELQ", "length": 623, "header": "tr|Q9C9B4-1|Q9C9B4_ARATH Isoform 1 of Polarity axis stabilization protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9C9B4-1" }, "locus": { "chromosome": "1", "start_pos": 27795040, "end_pos": 27798005, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G73930.2", "url": "https://www.ensemblgenomes.org/id/AT1G73930.2" }, { "database": "Ensembl Peptide", "id": "AT1G73930.2", "url": "https://www.ensemblgenomes.org/id/AT1G73930.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 260, "start_aa": "Thr", "end_pos": 260, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr260", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 468, "start_aa": "Thr", "end_pos": 468, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr468", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [ { "start_pos": 365, "end_pos": 365, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C9B4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C9B4" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser365" }, { "start_pos": 420, "end_pos": 420, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C9B4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C9B4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser420" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9C9B4", "url": "https://www.uniprot.org/uniprotkb/Q9C9B4" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9C9B4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C9B4" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9C9B4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C9B4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9C9B4", "url": "https://www.uniprot.org/uniprotkb/Q9C9B4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G73930", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G73930", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NY14-1", "protein_name": "DENN domain containing 6A", "gene_name": "DENND6A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALWERGAGGAAEAGEDATEEPERGLPLLPWDRFSAWLHCVCVVGFDLELGQAVEVIYPPHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRRSSGRKASLCCFLDHLDRDLPVYLKKDPAYYYGYVYFRQVRDKSLKRGYFQKSLVLISKLPYIHLFRTVLKQIAPEYFEKSEAFLEAVCSDVDRWPPPVPGEVLHLPIMGVVMKLRIPTYRDKPGTTPVVQNMHQADAQISMTLPTVHEVDLFRCFCPVFFHIQMLWELVLLGEPLVVMAPSPAESSETVLALVSCISPLKYCSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTLQHWPHIIRIGDMKLPGDVPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNKDEEIVKQLQKGVQQKRPTEAQSAILRRYFLELTESFIIPLERYVASLMPLQKCISPWKSPPQLRHFSQDDFMKTLEKAGPQLTSGLKGDWIGLYRHFLKSPNFDGWFRSRQKEMTQKLEALHLEALCNENLVFWSQKHTEVETVDLVLKLKNKLLQADREHLPVKTDTLKKLQTHIRDIILALPDDLQDILLKTGTA", "length": 584 }, "evidence": [ { "id": "Q9C9B4", "url": "https://omabrowser.org/oma/group/Q9C9B4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8C2MSG4-1", "protein_name": "Protein DENND6A isoform X1", "gene_name": "Dennd6a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MALRGPAVFGPGSRGSLDEAGAEGREAAALEAAGVALEDDDEEDGRRGLLRWDGFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGVLMKVRIPTCHDKPGTTQMVQLTQQADTHTSIILPTVHEVDLFRCFCPVFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTLQHWPHIIRIGDLKPAGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQKGVQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPEEFMKTLEKTGPQLTSGIKGDWIGLYRHFLKSPNFDGWFKTRRKEMTQKLEALHLEALCEEDLLLWIQKHTEVETVDLVLKLKNKLLQADRENLPVKPDTVAKLRTHIDAIILALPEDLQGILLKTGMT", "length": 605 }, "evidence": [ { "id": "Q9C9B4", "url": "https://omabrowser.org/oma/group/Q9C9B4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4A544-1", "protein_name": "DENN domain containing 6A", "gene_name": "Dennd6a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRDQAVFGPGSRGSLDEAGAEGREAAALAAAGVALEDDEEDDGRRGLLRWDGFSAWLHCVCVVGFDLELGQAVEVIYPQHCKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDEFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGLVMKVRIPTCHDKPGTTQLTQQADTHTSIILPTVHEVDLFRCFCPVFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTLQHWPHIIRIGDLKPAGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQKGVQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPEEFMKTLEKTGPQLTSGIKGDWIGLYRQFLKSPNFDGWFKTRRKEMTHKLEALHLEALCEEDLLLWIQKHTEVETVDLVLKLKNKLLQADRENLPVKPDTVEKLRTHIDAIILALPEDLQGILLKTGMT", "length": 602 }, "evidence": [ { "id": "Q9C9B4", "url": "https://omabrowser.org/oma/group/Q9C9B4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54VA9-1", "protein_name": "Protein DENND6 homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIIGGTDPLSMIFKEEEIKKQQILLEKEEKEKQEQQQKKLNKDNIFKLEEEGKKLELSTKVHIQHPNISTTSDNNSLLDPSNLTLNGKKKKWINSFCIINFDLEIGQVLDYSFPQVNFKEEESTNLCFLSFPDSNSHLQGDIIYSFKLKETSSLGNGQCNFQYGYVFFRQEKDSSISRGYLQKSVVLLSDESFVGLFKKVMEIVGPLYFDHGNTLLEVAYQNIMNWPELKLGQTYELPILGYILTFHVPHTRGTPHIIDPVVKQHQLGGGSGGGLSSSPSSSSGGGNIPTSNTTGVSPSIWSEMKLVSNLKSIDIYGCFKSFTTKLWMLWELVLLGHPLLVISPNPPMCSDSVLALVSLISPLHYCGDYRPYFTIHDTDFHKYTSFSHLSGTRPDDSNNNNNQDDSEYNNNNNNNGIPPSILGVTNPFFLKALGNWPNILTIGTTQQRLGGFKKIKSSLPNIMSKDLLTRHVLDNKEKILSEYKPFISPDKSVLKKITESADDDIINEVLRTHFLQLTQKFLIPLERYFSLLLPLAKTISIFQRPPRLKPFIKEECLNKIMETDERFIIDNKSKEIELYKQFLDCVNFKQWLDDKRAQAIKHLNILYRKAILDADIHTLLRGKPISTATDLLKRVEDQLILEENLFQTSKEIKDKFKSHIEIIRQYKNNCDNNNENNNNNILLTSPIKSTSLSSIALPPSSTTVTTKTTTTTK", "length": 715 }, "evidence": [ { "id": "Q9C9B4", "url": "https://omabrowser.org/oma/group/Q9C9B4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BH65-1", "protein_name": "Protein DENND6A", "gene_name": "Dennd6a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALPGPAVFGPGSRGSLDEAGAEGREAAALAAAGVALEDEEEDDGRRGLLRWDGFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDEFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGLVMKVRIPTCHDKPGTTQMVQLTQQADTHTSIILPTVHEVDLFRCFCPVFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTLQHWPHIIRIGDLKPAGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQKGIQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPEEFMKTLEKTGPQLTSGIKGDWIGLYRQFLKSPNFDGWFKTRRKEMTQKLEALHLEALCEEDLLLWIQKHTEVETVDLVLKLKNKLLQAGRESLPVKPDTVEKLRTHIDAIILALPDDLQGILLKTGMT", "length": 605 }, "evidence": [ { "id": "Q9C9B4", "url": "https://omabrowser.org/oma/group/Q9C9B4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IWF6-1", "protein_name": "Protein DENND6A", "gene_name": "DENND6A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALRGPAGLGPGSRRPLDEAVAGAEGREAPALVAAGGAPEDDEEDDGRGRGLLRWDSFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDREKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGVVMKVRIPTCHDKPGTTQIVQLTQQVDTNISVILPTVHEVDIFRCFCPVFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTLQHWPHIIRIGDLKPTGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQKGVQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPEEFMKTLEKTGPQLTSRIKGDWIGLYRHFLKSPNFDGWFKTRRKEMTQKLEALHLEALCEEDLLLWIQKHTEVETVDLVLKLKNKLLQADREHLPVKPDTMEKLRTHIDAIILALPEDLQGILLKTGMT", "length": 608 }, "evidence": [ { "id": "Q9C9B4", "url": "https://omabrowser.org/oma/group/Q9C9B4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W4D1-1", "protein_name": "UDENN domain-containing protein", "gene_name": "BEST:LD39762", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSADARIKQMAPSLDTTEREREHQNVDATNSNSEPSASDWVNFSQWMHCFCVVTFDLNLGQALEHVYPPAFMPSDQEVSNICYMAFPDSNSGCMGDTKFHMRLRCTTRRDSLPGYNAECSPALRQDGSHYWGFVYFRQKRDANLPRGYFQKSFIIITRLPFFNLYYDILSQLAPRYFEEGTDVLRLASEQINRQWPGLRVGKPLQLPLLDCSYQICIPRTSSSRKSTADGGIAGGAVESPPAMAACPAAKVLASVNEIELFRSLDFVMEQLYTLWELVITAEPIVVVGTSPADCSHMVQTLLAMIAPLEYCAEARPYFTIHDSEFREFTQECSSKTTLPACILGVTNPFFVKLLKDWPHMLRLVDNQKNMQQQQHLLLGQKHARNIASATSFSSSTELGGRIALKSNTNLNGSSSSSNGSGDASSAGLHSKYRPYLKKDKALIKKVLLGMKTKRPEHVQTALIRRHLLELTQSFMIPLERYMASLMPLQKDISPFKSAPNANSFKLDDFLGTLETAGPQLTSPLKGDWKGLYRRFFRSPNFRGWYGARHRELQLTLQDLQLQALSVANLEHWAHDKQEVEIIDMILKLKQKLNLYGDKATQLEGNNGSTQQQIRAQIECMKGLLPPDLKNVVNL", "length": 634 }, "evidence": [ { "id": "Q9C9B4", "url": "https://omabrowser.org/oma/group/Q9C9B4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "Q9C9B4", "url": "https://www.uniprot.org/uniprotkb/Q9C9B4" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9C9B4", "url": "https://www.uniprot.org/uniprotkb/Q9C9B4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "Q9C9B4", "url": "https://www.uniprot.org/uniprotkb/Q9C9B4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 483, "end_pos": 485, "annotation": "n_glycosylation_sequon" }, { "start_pos": 513, "end_pos": 515, "annotation": 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"sequon_annotation_sites": [ { "start_pos": 217, "end_pos": 219 }, { "start_pos": 483, "end_pos": 485 }, { "start_pos": 513, "end_pos": 515 }, { "start_pos": 73, "end_pos": 75 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9C9Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C9Y3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9C9Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C9Y3" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9C9Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C9Y3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen 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"https://www.ncbi.nlm.nih.gov/protein/NP_001327389", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G49480", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G49480", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9CA04", "url": "https://www.uniprot.org/uniprotkb/Q9CA04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CA04-1", "url": "https://www.uniprot.org/uniprotkb/Q9CA04-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTELVEHRVCEDRISSLPDDLLVKILLCVPTKDAAATTFLSKRWRFVWRMLPRLNYIETTSDVKSNTVWWFLEESFRFHKAPLLERLWIDLGPQCPINVNPVKWVAKARAPPASNVGPPLLDTRVRWLTFRLLWKGEPIRMPKSFYFCKTLERLTLSDKILVDVPCQVSLPSLRELDLFCVVYKDEDSHVKLLSSCPVLKHLKVTRNRRVEDNVRTFRVEVPSLLRLDYKAGMMFREDSDMSDPFLVTDTPNLLSLHIFDTVGYSLSVWYMPHLVTVVTDELFPSEKFMRPLSSVKYLALSPFDTMVPWCDAVNNYSRLVECMIHLSEYDLLESLLVLLSKCSKLKVFLVDSDIPRWNHDPALWNQPSSIPRCLSSHLEIFEWDGYVGREDEKKIIRYILENSKYLKTAGISPNSTFSGEEKQKMEELESMHRTPTSVLLSSARMSFRY", "length": 449, "header": "sp|Q9CA04-1|FDL45_ARATH Isoform 1 of Putative F-box/FBD/LRR-repeat protein At3g49480 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=3 CANONICAL=Q9CA04-1" }, "isoforms": [ { "isoform_ac": "Q9CA04-1", "url": "https://www.uniprot.org/uniprotkb/Q9CA04/entry#Q9CA04-1", "sequence": { "sequence": "MTELVEHRVCEDRISSLPDDLLVKILLCVPTKDAAATTFLSKRWRFVWRMLPRLNYIETTSDVKSNTVWWFLEESFRFHKAPLLERLWIDLGPQCPINVNPVKWVAKARAPPASNVGPPLLDTRVRWLTFRLLWKGEPIRMPKSFYFCKTLERLTLSDKILVDVPCQVSLPSLRELDLFCVVYKDEDSHVKLLSSCPVLKHLKVTRNRRVEDNVRTFRVEVPSLLRLDYKAGMMFREDSDMSDPFLVTDTPNLLSLHIFDTVGYSLSVWYMPHLVTVVTDELFPSEKFMRPLSSVKYLALSPFDTMVPWCDAVNNYSRLVECMIHLSEYDLLESLLVLLSKCSKLKVFLVDSDIPRWNHDPALWNQPSSIPRCLSSHLEIFEWDGYVGREDEKKIIRYILENSKYLKTAGISPNSTFSGEEKQKMEELESMHRTPTSVLLSSARMSFRY", "length": 449, "header": "sp|Q9CA04-1|FDL45_ARATH Isoform 1 of Putative F-box/FBD/LRR-repeat protein At3g49480 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=3 CANONICAL=Q9CA04-1" }, "locus": { "chromosome": "3", "start_pos": 18342544, "end_pos": 18344137, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G49480.2", "url": "https://www.ensemblgenomes.org/id/AT3G49480.2" }, { "database": "Ensembl Peptide", "id": "AT3G49480.2", "url": "https://www.ensemblgenomes.org/id/AT3G49480.2" } ] } } ], "glycosylation": [], 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Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9CA04", "url": "https://www.uniprot.org/uniprotkb/Q9CA04" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9CA04", "url": "https://www.uniprot.org/uniprotkb/Q9CA04" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G49480", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G49480", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9CA04", "url": "https://www.uniprot.org/uniprotkb/Q9CA04" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to bacterium", "id": "GO:0009617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009617", "evidence": [ { "database": "UniProtKB", "id": "Q9CA04", "url": "https://www.uniprot.org/uniprotkb/Q9CA04" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 414, "end_pos": 416, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9CA04-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 449, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9CA04-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9CA04" } ], "lectin_list": [], "domain_list": [], "binding_sites": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9CA10-1", "uniprot_ac": "Q9CA10", "uniprot_id": "Q9CA10_ARATH", "mass": { "chemical_mass": 23658.0, "monoisotopic_mass": 23658.0 }, "refseq": { "ac": "NP_001327755", "name": "Plant invertase/pectin methylesterase inhibitor superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327755" }, "gene_names": [], "protein_names": [ { "name": "Plant invertase/pectin methylesterase inhibitor superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_001327755", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327755" }, { "id": "Q9CA10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CA10/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9CA10", "url": "https://www.uniprot.org/uniprotkb/Q9CA10" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9CA10", "locus": {} } ], "crossref": [ { "id": "AT3G49330", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G49330", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd15797", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15797", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "824095", "url": "https://www.ncbi.nlm.nih.gov/gene/824095", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006501", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006501", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034086", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034086", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035513", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035513", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G49330", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G49330", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DMAIYAS", "url": "https://omabrowser.org/oma/group/DMAIYAS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9CA10", "url": "https://www.orthodb.org/?gene=Q9CA10", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9M3A0", "url": "https://www.orthodb.org/?gene=Q9M3A0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36710", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36710", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36710:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36710:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04043", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04043", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001327755", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327755", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G49330", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G49330", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9CA10", "url": "https://www.uniprot.org/uniprotkb/Q9CA10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CA10-1", "url": "https://www.uniprot.org/uniprotkb/Q9CA10-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9M3A0", "url": "https://www.uniprot.org/uniprotkb/Q9M3A0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9M3A0-1", "url": "https://www.uniprot.org/uniprotkb/Q9M3A0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MILPIKLSLEHIIKTTPYEQMAYVHLLMSLLIFITFKSSISVVPDPPTQNLINRICKQTIDFKFCNQTITSQLVRRQTSIKTIAKLTAAKAWINAIQTLDNIEDSLLPKAKDKRDKAEFDACRKAYKLVDAHLDNALKYLYLRDYRFMRAYQALALVNISMCRTSFFHPTPMVYANWNMKMLTDIAIYAGKILSPPPPLTKKSKSP", "length": 206, "header": "tr|Q9CA10-1|Q9CA10_ARATH Isoform 1 of Plant invertase/pectin methylesterase inhibitor superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CA10-1" }, "isoforms": [ { "isoform_ac": "Q9CA10-1", "url": "https://www.uniprot.org/uniprotkb/Q9CA10/entry", "sequence": { "sequence": "MILPIKLSLEHIIKTTPYEQMAYVHLLMSLLIFITFKSSISVVPDPPTQNLINRICKQTIDFKFCNQTITSQLVRRQTSIKTIAKLTAAKAWINAIQTLDNIEDSLLPKAKDKRDKAEFDACRKAYKLVDAHLDNALKYLYLRDYRFMRAYQALALVNISMCRTSFFHPTPMVYANWNMKMLTDIAIYAGKILSPPPPLTKKSKSP", "length": 206, "header": "tr|Q9CA10-1|Q9CA10_ARATH Isoform 1 of Plant invertase/pectin methylesterase inhibitor superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CA10-1" }, "locus": { "chromosome": "3", "start_pos": 18291339, "end_pos": 18292227, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G49330.2", "url": "https://www.ensemblgenomes.org/id/AT3G49330.2" }, { "database": "Ensembl Peptide", "id": "AT3G49330.2", "url": "https://www.ensemblgenomes.org/id/AT3G49330.2" } ] } }, { "isoform_ac": "Q9M3A0-1", "url": "https://www.uniprot.org/uniprotkb/Q9M3A0/entry", "sequence": { "sequence": "MAYVHLLMSLLIFITFKSSISVVPDPPTQNLINRICKQTIDFKFCNQTITSQLVRRQTSIKTIAKLTAAKAWINAIQTLDNIEDSLLPKAKDKRDKAEFDACRKAYKLVDAHLDNALKYLYLRDYRFMRAYQALALVNISMCRTSFFHPTPMVYANWNMKMLTDIAIYAGKILSPPPPLTKKSKSP", "length": 186, "header": "tr|Q9M3A0-1|Q9CA10_ARATH Computationally mapped isoform of Plant invertase/pectin methylesterase inhibitor superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CA10-1" }, "locus": { "chromosome": "3", "start_pos": 18291429, "end_pos": 18292267, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G49330.1", "url": "https://www.ensemblgenomes.org/id/AT3G49330.1" }, { "database": "Ensembl Peptide", "id": "AT3G49330.1", "url": "https://www.ensemblgenomes.org/id/AT3G49330.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, 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"date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria 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Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9CA11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CA11" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9CA11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CA11" } ], "reference": [ { "type": 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D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9CA85", "url": "https://www.uniprot.org/uniprotkb/Q9CA85" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9CA85", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CA85" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": 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"tr|Q9CAD8-1|Q9CAD8_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAD8-1" }, "isoforms": [ { "isoform_ac": "Q9CAD8-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAD8/entry", "sequence": { "sequence": "MASSSSSPRTWRYRVFTSFHGPDVRKTVLSHLRKQFICNGITMFDDQRIERGQTISPELTRGIRESRISIVVLSKNYASSSWCLDELLEILKCKEDIGQIVMTVFYGVDPSDVRKQTGEFGIRFSETWARKTEEEKQKWSQALNDVGNIAGEHFLNWDKESKMVETIARDVSNKLNTTISKDFEDMVGIEAHLQKMQSLLHLDNEDEAMIVGICGPSGIGKTTIARALHSRLSSSFQLTCFMENLKGSYNSGLDEYGLKLCLQQQLLSKILNQNDLRIFHLGAIPERLCDQNVLIILDGVDDLQQLEALTNETSWFGPGSRIIVTTEDQELLEQHDINNTYHVDFPTIKEARKIFCRSAFRQSSAPYGFEKLVERVLKLCSNLPLGLRVMGSSLRRKKEDDWESILHRQENSLDRKIEGVLRVGYDNLHKNDQFLFLLIAFFFNYQDNDHVKAMLGDSKLDVRYGLKTLAYKSLIQISIKGDIVMHKLLQQVGKEAVQRQDHGKRQILIDSDEICDVLENDSGNRNVMGISFDISTLLNDVYISAEAFKRIRNLRFLSIYKTRLDTNVRLHLSEDMVFPPQLRLLHWEVYPGKSLPHTFRPEYLVELNLRDNQLEKLWEGIQPLTNLKKMELLRSSNLKVLPNLSDATNLEVLNLALCESLVEIPPSIGNLHKLEKLIMDFCRKLKVVPTHFNLASLESLGMMGCWQLKNIPDISTNITTLKITDTMLEDLPQSIRLWSGLQVLDIYGSVNIYHAPAEIYLEGRGADIKKIPDCIKDLDGLKELHIYGCPKIVSLPELPSSLKRLIVDTCESLETLVHFPFESAIEDLYFSNCFKLGQEARRVITKQSRDAWLPGRNVPAEFHYRAVGNSLTIPTDTYECRICVVISPKQKMVEFFDLLCRQRKNGFSTGQKRLQLLPKVQAEHLFIGHFTLSDKLDSGVLLEFSTSSKDIDIIECGIQIFHGHYR", "length": 966, "header": "tr|Q9CAD8-1|Q9CAD8_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAD8-1" }, "locus": { "chromosome": "1", "start_pos": 23641770, "end_pos": 23645132, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63730.1", "url": "https://www.ensemblgenomes.org/id/AT1G63730.1" }, { "database": "Ensembl Peptide", "id": "AT1G63730.1", "url": "https://www.ensemblgenomes.org/id/AT1G63730.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 161, "end_pos": 161, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9CAD8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CAD8" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser161" }, { "start_pos": 734, "end_pos": 734, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9CAD8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CAD8" } ], "site_lbl": "Ser734" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9CAD8", "url": "https://www.uniprot.org/uniprotkb/Q9CAD8" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9CAD8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CAD8" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9CAD8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CAD8" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9CAD8", "url": "https://www.uniprot.org/uniprotkb/Q9CAD8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G63730", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G63730", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q9CAD8", "url": "https://www.uniprot.org/uniprotkb/Q9CAD8" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9CAD8", "url": "https://www.uniprot.org/uniprotkb/Q9CAD8" } ], "pmid": "" }, { "name": "response to insect", "id": "GO:0009625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009625", "evidence": [ { "database": "UniProtKB", "id": "Q9CAD8", "url": "https://www.uniprot.org/uniprotkb/Q9CAD8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "Q9CAD8", "url": "https://www.uniprot.org/uniprotkb/Q9CAD8" } ], "pmid": "" }, { "name": "NAD+ nucleosidase activity, cyclic ADP-ribose generating", "id": "GO:0061809", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061809", "evidence": [ { "database": "UniProtKB", "id": "Q9CAD8", "url": "https://www.uniprot.org/uniprotkb/Q9CAD8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { 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CANONICAL=Q9CAJ2-1" }, "isoforms": [ { "isoform_ac": "Q9CAJ2-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAJ2/entry", "sequence": { "sequence": "MAESSKLSATTVEAAPAMIKAKDVISPSEKEESDQTEITKVSVLKNLDEKEMIKEFADRLQRLEAKVDLLVTKADLLAIKADIQELLISAKGEKVPAMKTSAKASSESDDSYMDTSSEDESSSAEEPVNKPAASAAKPATKDSLFSAGFKPAAKDSLFSAGFKPDSLFSAGFEPAAKDSLFSAGFKPGSLFSAGFEPAAKDSLFSAGFKPDSLFSVGVKPAAKDSLFSVGVNGRSFSVTGFDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGAEKALELGRHDVGGWDLVVGKAEPIRSGSTWPFPGRCGNQGRCTFC", "length": 335, "header": "tr|Q9CAJ2-1|Q9CAJ2_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAJ2-1" }, "locus": { "chromosome": "1", "start_pos": 27397089, "end_pos": 27398500, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G72800.1", "url": "https://www.ensemblgenomes.org/id/AT1G72800.1" }, { "database": "Ensembl Peptide", "id": "AT1G72800.1", "url": "https://www.ensemblgenomes.org/id/AT1G72800.1" } ] } 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J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9CAJ2", "url": "https://www.uniprot.org/uniprotkb/Q9CAJ2" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9CAJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CAJ2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9CAJ2", "url": "https://www.uniprot.org/uniprotkb/Q9CAJ2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G72800", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G72800", "resource": 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"locus": { "chromosome": "1", "start_pos": 23689603, "end_pos": 23690807, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63840.1", "url": "https://www.ensemblgenomes.org/id/AT1G63840.1" }, { "database": "Ensembl Peptide", "id": "AT1G63840.1", "url": "https://www.ensemblgenomes.org/id/AT1G63840.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9CAJ8", "url": "https://www.uniprot.org/uniprotkb/Q9CAJ8" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9CAJ8", "url": "https://www.uniprot.org/uniprotkb/Q9CAJ8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G63840", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G63840", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9CAJ8", "url": "https://www.uniprot.org/uniprotkb/Q9CAJ8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "Q9CAJ8", "url": "https://www.uniprot.org/uniprotkb/Q9CAJ8" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "Q9CAJ8", "url": "https://www.uniprot.org/uniprotkb/Q9CAJ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "Q9CAJ8", "url": "https://www.uniprot.org/uniprotkb/Q9CAJ8" } ], "pmid": "" }, { "name": "response to abscisic acid", "id": "GO:0009737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009737", "evidence": [ { "database": "UniProtKB", "id": "Q9CAJ8", "url": "https://www.uniprot.org/uniprotkb/Q9CAJ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], 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"Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07725", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07725", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "16301", "url": "https://www.rhea-db.org/rhea/16301", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT1G63870", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G63870", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9CAK0", "url": "https://www.uniprot.org/uniprotkb/Q9CAK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CAK0-1", "url": 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR006501", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035513", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035513", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G70540", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G70540", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DFDTCND", "url": "https://omabrowser.org/oma/group/DFDTCND/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9CAL1", "url": "https://www.orthodb.org/?gene=Q9CAL1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF04043", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04043", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_564990", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_564990", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012334", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012334", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G70500", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G70500", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GPCQEKL", "url": "https://omabrowser.org/oma/group/GPCQEKL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31375", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31375", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00295", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00295", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G70500", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G70500", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9CAL5", "url": "https://www.uniprot.org/uniprotkb/Q9CAL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CAL5-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKPFIISLFALLMVASYGATGKMLFKELDILGKLENLDVPEDDIEDDVTFFDFSSFTSQYSGKNLVNVDSFNASGDGVSDDTQAFIRAWTMACSAPNSVLLVPQGRSYLVNATKFDGPCQEKLIIQIDGTIIAPDEPSQWDPKFPRNWLQFSKLQGVVFQGNGVIDGSGTKWWAASCKKNKSNPCVGAPTALTIYSSSNVYVRGLTIRNSQQMHLIIQRSTTVRISRVMVTSPGDSPNTDGIHITASTDVVVQDSKISTGDDCVSIVNGSAKIKMKRIYCGPGHGISIGSLGQGHSKGTVTAVVLETAFLKNTTNGLRIKTWQGGNGYVKGVRFENVVMQDVANPIIIDQFYCDSPSTCQNQTSAVHISEIMYRNITGTTKSSKAINFKCSDAVPCSHIVLNNINLEGNDGKVEAYCNSAEGFGYGVVHPSADCLYSHDDKSLNQTDQYLAETIMVEKETENAHDEL", "length": 468, "header": "tr|Q9CAL5-1|Q9CAL5_ARATH Isoform 1 of endo-polygalacturonase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAL5-1" }, "isoforms": [ { "isoform_ac": "Q9CAL5-1", "url": 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"https://www.ensemblgenomes.org/id/AT1G70500.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 227, "end_pos": 227, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9CAL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CAL5" } ], "site_lbl": "Ser227" }, { "start_pos": 246, "end_pos": 246, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9CAL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CAL5" } ], "site_lbl": "Thr246" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan 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Classification" ] }, { "id": "ath:AT1G63200", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G63200", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NIGVKYY", "url": "https://omabrowser.org/oma/group/NIGVKYY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31260", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31260", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31260:SF78", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31260:SF78", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT1G63200", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G63200", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9CAM3", "url": "https://www.uniprot.org/uniprotkb/Q9CAM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CAM3-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAM3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCDIDGSWVAWLEPAYLLWKPGGRGYVRPSCMTRTEEDKPELTPEEELALMTKQVNASDGFDIDFSSFLCVFNYHPAILHSDQFADDEFDTTEDLLKSLAQEALDDHNGRHGTEYEFVKVVKANFHFACAMMFLITFQVKDPYDDMVKLFQTRVRHGKHITTNYVFCRPKPNQGVKYFGIKKVVKRDIEQVVKSHVPKDVVKKQKLEDEPLCATRS", "length": 216, "header": "tr|Q9CAM3-1|Q9CAM3_ARATH Isoform 1 of Cystatin/monellin superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9CAM3-1" }, "isoforms": [ { "isoform_ac": "Q9CAM3-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAM3/entry", "sequence": { "sequence": "MCDIDGSWVAWLEPAYLLWKPGGRGYVRPSCMTRTEEDKPELTPEEELALMTKQVNASDGFDIDFSSFLCVFNYHPAILHSDQFADDEFDTTEDLLKSLAQEALDDHNGRHGTEYEFVKVVKANFHFACAMMFLITFQVKDPYDDMVKLFQTRVRHGKHITTNYVFCRPKPNQGVKYFGIKKVVKRDIEQVVKSHVPKDVVKKQKLEDEPLCATRS", "length": 216, "header": "tr|Q9CAM3-1|Q9CAM3_ARATH Isoform 1 of Cystatin/monellin superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9CAM3-1" }, "locus": { "chromosome": "1", "start_pos": 23433520, "end_pos": 23434600, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63200.1", "url": "https://www.ensemblgenomes.org/id/AT1G63200.1" }, { "database": "Ensembl Peptide", "id": "AT1G63200.1", "url": "https://www.ensemblgenomes.org/id/AT1G63200.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 194, "end_pos": 194, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9CAM3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CAM3" } ], "site_lbl": "Ser194" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, 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"url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9CAM3", "url": "https://www.uniprot.org/uniprotkb/Q9CAM3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G63200", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G63200", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], 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"categories": [ "Protein" ] } ], "sequence": { "sequence": "MQRSISLTAKRLFVHWNLQGIGNPPTVPSFFNLCGSGCWERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNMLHDGRLDKSFLNMLS", "length": 629, "header": "sp|Q9CAM8-1|PP100_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9CAM8-1" }, "isoforms": [ { "isoform_ac": "Q9CAM8-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAM8/entry#Q9CAM8-1", "sequence": { "sequence": "MQRSISLTAKRLFVHWNLQGIGNPPTVPSFFNLCGSGCWERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNMLHDGRLDKSFLNMLS", "length": 629, "header": "sp|Q9CAM8-1|PP100_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9CAM8-1" }, "locus": { "chromosome": "1", "start_pos": 23419294, "end_pos": 23421714, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63150.1", "url": "https://www.ensemblgenomes.org/id/AT1G63150.1" }, { "database": "Ensembl Peptide", "id": "AT1G63150.1", "url": "https://www.ensemblgenomes.org/id/AT1G63150.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9CAM8", "url": "https://www.uniprot.org/uniprotkb/Q9CAM8" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q9CAM8", "url": "https://www.uniprot.org/uniprotkb/Q9CAM8" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.", "journal": "Plant Cell", "date": "2004", "authors": "Lurin Claire, Andr\u00e9s Charles, Aubourg S\u00e9bastien, Bellaoui Mohammed, Bitton Fr\u00e9d\u00e9rique, Bruy\u00e8re Cl\u00e9mence, Caboche Michel, Debast C\u00e9drig, Gualberto Jos\u00e9, Hoffmann Beate, Lecharny Alain, Le Ret Monique, Martin-Magniette Marie-Laure, Mireau Hakim, Peeters Nemo, Renou Jean-Pierre, Szurek Boris, Taconnat Ludivine, Small Ian", "evidence": [ { "database": "UniProtKB", "id": "Q9CAM8", "url": "https://www.uniprot.org/uniprotkb/Q9CAM8" } ], "reference": [ { "type": "PubMed", "id": "15269332", "url": "https://glygen.org/publication/PubMed/15269332" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9CAM8", "url": "https://www.uniprot.org/uniprotkb/Q9CAM8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G63150", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G63150", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9CAM8", "url": "https://www.uniprot.org/uniprotkb/Q9CAM8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9CAM8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 629, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9CAM8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9CAM8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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"sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9CAN7-1", "uniprot_ac": "Q9CAN7", "uniprot_id": "Q9CAN7_ARATH", "mass": { "chemical_mass": 15956.0, "monoisotopic_mass": 15956.0 }, "refseq": {}, "gene_names": [ { "name": "F16M19.2", "type": "synonym", "evidence": [ { "id": 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"842609", "url": "https://www.ncbi.nlm.nih.gov/gene/842609", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT1G63060", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G63060", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "APVYIVC", "url": "https://omabrowser.org/oma/group/APVYIVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9CAN7", "url": "https://www.orthodb.org/?gene=Q9CAN7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33919", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33919", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33919:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33919:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT1G63060", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G63060", 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"tr|Q9CAN7-1|Q9CAN7_ARATH Isoform 1 of Ribosome biogenesis NEP1-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAN7-1" }, "locus": { "chromosome": "1", "start_pos": 23383971, "end_pos": 23385109, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G63060.1", "url": "https://www.ensemblgenomes.org/id/AT1G63060.1" }, { "database": "Ensembl Peptide", "id": "AT1G63060.1", "url": "https://www.ensemblgenomes.org/id/AT1G63060.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong 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"https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G77670", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00609", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00609", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "844103", "url": "https://www.ncbi.nlm.nih.gov/gene/844103", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004839", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004839", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015424", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015424", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051326", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051326", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G77670", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G77670", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SQGANQY", "url": "https://omabrowser.org/oma/group/SQGANQY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR43807", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43807", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43807:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43807:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00155", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00155", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9CAP1", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9CAP1", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT1G77670", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G77670", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9CAP1", "url": "https://www.uniprot.org/uniprotkb/Q9CAP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CAP1-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAP1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYLDINGVMIKQFSFKASLLPFSSNFRQSSAKIHRPIGATMTTVSTQNESTQKPVQVAKRLEKFKTTIFTQMSILAVKHGAINLGQGFPNFDGPDFVKEAAIQAIKDGKNQYARGYGIPQLNSAIAARFREDTGLVVDPEKEVTVTSGCTEAIAAAMLGLINPGDEVILFAPFYDSYEATLSMAGAKVKGITLRPPDFSIPLEELKAAVTNKTRAILMNTPHNPTGKMFTREELETIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSYLTFATSTPAQWAAVAALKAPESYFKELKRDYNVKKETLVKGLKEVGFTVFPSSGTYFVVADHTPFGMENDVAFCEYLIEEVGVVAIPTSVFYLNPEEGKNLVRFAFCKDEETLRGAIERMKQKLKRKV", "length": 440, "header": "tr|Q9CAP1-1|Q9CAP1_ARATH Isoform 1 of Pyridoxal phosphate (PLP)-dependent transferases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAP1-1" }, "isoforms": [ { "isoform_ac": "Q9CAP1-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAP1/entry", "sequence": { "sequence": "MYLDINGVMIKQFSFKASLLPFSSNFRQSSAKIHRPIGATMTTVSTQNESTQKPVQVAKRLEKFKTTIFTQMSILAVKHGAINLGQGFPNFDGPDFVKEAAIQAIKDGKNQYARGYGIPQLNSAIAARFREDTGLVVDPEKEVTVTSGCTEAIAAAMLGLINPGDEVILFAPFYDSYEATLSMAGAKVKGITLRPPDFSIPLEELKAAVTNKTRAILMNTPHNPTGKMFTREELETIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSYLTFATSTPAQWAAVAALKAPESYFKELKRDYNVKKETLVKGLKEVGFTVFPSSGTYFVVADHTPFGMENDVAFCEYLIEEVGVVAIPTSVFYLNPEEGKNLVRFAFCKDEETLRGAIERMKQKLKRKV", "length": 440, "header": "tr|Q9CAP1-1|Q9CAP1_ARATH Isoform 1 of Pyridoxal phosphate (PLP)-dependent transferases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAP1-1" }, "locus": { "chromosome": "1", "start_pos": 29188843, "end_pos": 29191079, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G77670.1", "url": "https://www.ensemblgenomes.org/id/AT1G77670.1" }, { "database": "Ensembl Peptide", "id": "AT1G77670.1", "url": "https://www.ensemblgenomes.org/id/AT1G77670.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9CAP1", "url": "https://www.uniprot.org/uniprotkb/Q9CAP1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9CAP1", "url": "https://www.uniprot.org/uniprotkb/Q9CAP1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G77670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G77670", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AH66-1", "protein_name": "Kynurenine--oxoglutarate transaminase 1", "gene_name": "KYAT1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLRRVGPFLRHFLLERNCSAGYSSYCSEAKMSRPVQARRLEGVDKNIWVEFVKLAATYSTVNLGQGFPDFPPPEFLKEAFSRAVSGEEEHMLHQYTRAFGHPPLVKILAQLFGKLLGRDLDPMTNVMVTVGAYQALFCCFQAFIDEGDEVIIIEPFFDCYEPMVKMAGGTPVYIPLRPKAPKEGKLMSSADWQLDPAELASKFSEQTKAIVLNSPNNPLGKVFSRGELELIADLCVKHDALCISDEVYEWLVYDGKQHIRIASLPGMWDRTVIIGSAGKTFSVTGWKVGWTVGPNRLLQHLRTVHQNSVYHCATAAQDAVAKGFQRELEHYGKPDSYFVQLPRELQQKRDQLVQSLVAVGMKPIIPEGTYFLVADISEFKSEVPDVPNSDEPYDSRFAKWMVKNKGLAAIPLSAFYCGAHKDNYNTFIRFCFAKEDATLKAADDILQRWKLEKTAP", "length": 456 }, "evidence": [ { "id": "Q9CAP1", "url": "https://omabrowser.org/oma/group/Q9CAP1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TKC4-1", "protein_name": "Kynurenine--oxoglutarate transaminase 1", "gene_name": "KYAT1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAERARKRPCGSLTMAKRLQAQRLDGIDYSPRVEFVQLASEEADVVNLGQGFPDFSPPEFAVEAFQHAVSGDFMLNQYTKAFGYPPLTKILANFFGKLLGQEIDPLKNVLVTVGAYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTLMAGGRPVFVSLKPSPTQKGEPDSSSNWQLDPTELASKFTSRTKAFILNTPNNPLGKVFSKEELELVASLCQQHDVVCISDEVYQWMVFDGFQHISIASLPGMWERTLTIGSAGKTFSVTGWKVGWVLGPDSLMKHLRTVHQNSIYHCATQGQAAVAQSFEREQLHFGRPSSYFVQLPQYIQRCRDHMIQSLQSMGFRPVIPQGSYFLITDISDFKNKMPDLPGAAGEPYDRRFVKWMIKNKGLVAVPVSIFFSLPHQKFFDHYIRFCFVKVKDSPGEGRAPQASSDLLGRGVGLICVGAG", "length": 448 }, "evidence": [ { "id": "Q9CAP1", "url": "https://omabrowser.org/oma/group/Q9CAP1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1QAI8-1", "protein_name": "Kynurenine--oxoglutarate transaminase 1", "gene_name": "kyat1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": 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"MSKQLQARRLEGIDHNPWVEFTRLSKEYDVVNLGQGFPDFSPPDFAVQAFQQATTGNFMLNQYTSAFGYPPLTKILASFFGKLLGQEMDPLKNVLVTVGAYGALFTAFQALVDEGDEVIIIEPAFNCYEPMTMMAGGRPVFVSLRLSPAPKGQLGSSNDWQLDPTELASKFTPRTKILVLNTPNNPLGKVFSKKELELVAALCQQHDVLCFSDEVYQWLVYDGHQHISIASLPGMWERTLTIGSAGKSFSATGWKVGWVMGPDNIMKHLRTVHQNSIFHCPTQAQAAVAQCFEREQQHFGQPSSYFLQLPQAMGLNRDHMIQSLQSVGLKPLIPQGSYFLIADISDFKSSMPDLPGAMDEPYDTRFAKWMIKNKGLSAIPVSTFYSQPHHKDFDHYIRFCFVKDKATLQAMDKRLCSWKGEPQA", "length": 424 }, "evidence": [ { "id": "Q9CAP1", "url": "https://omabrowser.org/oma/group/Q9CAP1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9CAP1", "url": "https://www.uniprot.org/uniprotkb/Q9CAP1" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9CAP1", "url": "https://www.uniprot.org/uniprotkb/Q9CAP1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "kynurenine-oxoglutarate transaminase activity", "id": "GO:0016212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016212", "evidence": [ { "database": "UniProtKB", "id": "Q9CAP1", "url": "https://www.uniprot.org/uniprotkb/Q9CAP1" } ], "pmid": "" }, { "name": "pyridoxal phosphate binding", "id": "GO:0030170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030170", "evidence": [ { "database": "UniProtKB", "id": "Q9CAP1", "url": "https://www.uniprot.org/uniprotkb/Q9CAP1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], 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"MSQKKLTRTQSSLLRSSPTIRSSIQSLSSITECDDFNETSHHRREQDLEAGEKEEKQRRRKPVKSFGSMNRIKPGLAFTLACLSFLSLSSFLLFFVDEIFTSENLLLGLIFVALALFFASRNMAVINQTVIAIKQIRVRSRIKHKPKPVQWYIGDSKPEPIKEEETRLVVKEGVQFFSNGDFYEGEFNRGKCNGSGVYYYYVNGRYEGDWINGRYDGYGIECWSKGSKYKGQYKQGLRHGFGVYWFYTGDSYSGEWFNGQSHGFGVQTCADGSSFVGEFKFGVKHGLGSYHFRNGDKYAGEYFGDKIHGFGVYHFANGHYYEGAWHEGRKQGYGTYRFRTGDIKSGEWDDGNLVNHLPLDSDPVRRAVQSARERAKNGVNQRRIDEQVIRAVAAANKAATAARVAAVKAVQNQMDGKICDN", "length": 421, "header": "tr|Q9CAP2-1|Q9CAP2_ARATH Isoform 1 of Histone H3 K4-specific methyltransferase SET7/9 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAP2-1" }, "isoforms": [ { "isoform_ac": "Q9CAP2-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAP2/entry", "sequence": { "sequence": 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Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9CAP2", "url": "https://www.uniprot.org/uniprotkb/Q9CAP2" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9CAP2", "url": "https://www.uniprot.org/uniprotkb/Q9CAP2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G77660", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G77660", "resource": "KEGG Pathway" } ], 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"MAFLSLPSDVVEEFLFKTPIESLVLCKPTCKQLYALCNDKRFIYNHLDLSEERLMRIYLDKIKIINPVTLDILCLPVPAEFDSVTFNVIHCDGLLLCRWTTRGLDRYNKLAVWNPISGQLKFVESFFHGVTDLYGFGYANNGPRDSYKILRVSYWRKECEIYDLKSKLWRAFSATLDWVVNTPQQNVFMNGNMYWIADTLGDNIRETFIQSFDFSKETFKPICSFPYENKIIDTLIMNGIHRIADSVILSSFRVDRLSLFRQQRLEDKKYEMEVWVTNKVTDEVVSWTKYFNVTHHPDLPILNPYLFTYMRVPTFFIHETNSIMLWCDKAAGKGFACTSFYEIGDQGEVKHQLETRKRFRANGERNSCVSSCVYVPSLVPIPE", "length": 383, "header": "sp|Q9CAP3-1|FB89_ARATH Isoform 1 of Putative F-box protein At1g77650 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9CAP3-1" }, "locus": { "chromosome": "1", "start_pos": 29181110, "end_pos": 29182261, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G77650.1", "url": "https://www.ensemblgenomes.org/id/AT1G77650.1" }, { "database": "Ensembl Peptide", "id": "AT1G77650.1", "url": "https://www.ensemblgenomes.org/id/AT1G77650.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 107, "end_pos": 107, "kinase_uniprot_canonical_ac": 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Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9CAP3", "url": "https://www.uniprot.org/uniprotkb/Q9CAP3" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9CAP3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CAP3" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9CAP3", "url": "https://www.uniprot.org/uniprotkb/Q9CAP3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G77650", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G77650", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9CAP3", "url": "https://www.uniprot.org/uniprotkb/Q9CAP3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 292, "end_pos": 294, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9CAP3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 383, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9CAP3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9CAP3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], 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& cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9CAS2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CAS2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9CAS2", "url": "https://www.uniprot.org/uniprotkb/Q9CAS2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G69890", "name": "", "url": 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"date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9CAV2-1", "uniprot_ac": "Q9CAV2", "uniprot_id": "Q9CAV2_ARATH", "mass": { "chemical_mass": 32136.0, "monoisotopic_mass": 32136.0 }, "refseq": {}, "gene_names": [ { "name": "T9J14.19", "type": "synonym", "evidence": [ { "id": "Q9CAV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAV2" } ] }, { "name": "T9J14_19", "type": "synonym", "evidence": [ { "id": "Q9CAV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAV2" } ] } ], "protein_names": [ { "name": "DUF868 family protein (DUF868)", "type": "recommended", "evidence": [ { "id": "Q9CAV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAV2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": 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"https://www.uniprot.org/uniprotkb/Q9CAV2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRDFPSCSGENGVQIADSSSSSSAGRNAQNLVICIYRCRIRGRTCLITVTWTKNLMGQCVTVGVDDSCNRSLCKVEIKPWLFTKRKGSKTLEAYACNIDVFWDLSSAKFGSSPEPLGGFYVGVVVDKEMVLLLGDMKKEAFKKTNAAPSSSLGAVFIAKKEHVFGKRTFATKAQFSGDGKTHDLVIECDTSLSDPCLIVRVDGKILMQVQRLHWKFRGNDTIIVNRISVEVLWDVHSWFFGLPSSPGNAVFMFRTCQSVEKTWSFTQVPTSSKSQSFGFSLILYAWKNE", "length": 289, "header": "tr|Q9CAV2-1|Q9CAV2_ARATH Isoform 1 of DUF868 family protein (DUF868) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9CAV2-1" }, "isoforms": [ { "isoform_ac": "Q9CAV2-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAV2/entry", "sequence": { "sequence": 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Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9CAV2", "url": "https://www.uniprot.org/uniprotkb/Q9CAV2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9CAV2", "url": "https://www.uniprot.org/uniprotkb/Q9CAV2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G04860", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G04860", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9CAV2", "url": "https://www.uniprot.org/uniprotkb/Q9CAV2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 61 ], "snv_sites": [], 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Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9CAW3", "url": "https://www.uniprot.org/uniprotkb/Q9CAW3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9CAW3", "url": "https://www.uniprot.org/uniprotkb/Q9CAW3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G04990", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G04990", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9CAW3", "url": "https://www.uniprot.org/uniprotkb/Q9CAW3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ 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Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, 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"MSMRHNLQRHAKRILAYSNRPRFFCSYTNVTLSSPATNQTLQSRIEAASHQKAEITTVLEQWLQQQQQQGKQLNPSLLRGIVEKLRSSNRPRQALEVSDWMVEQKMYNLPEDFSARFHLTEKVLNLEEAEKFFESIPENMRFESMYNSLLRSYARQSGEKALKKAESVFKKMKKLGLLLRPSPYNSMTSLYSSLGNRDKVDEILREMKENNVELDNVTVNNALRVYAAVSDVATMDKFLADRKEITRLDGLTMLAMAKAYELMSLYGEAGEIEDVHRVWDKYKATRQKDNEEFRTLIGSLLKLGDTKGAEKIYYNEWECSGLEFDNRIPDMLVSGYREKGMVMKADKLVNKTLWIRGLATPITLLLEEMDKKGNKVSPPGLRDLIKNLRDSNQLSKALEASTWMCQKKVFNLFSEDYATRLHLTEKVLGLEEAENFFESSIPENMKDYSVYDTLLSCYARSSNTQSKAEAVFEKMRELGLQSKLSPFNSLISLYSGQGKLSVVNILLCDMKHKNIEPDIVTRNNVLRANAYILAIDSMEKV", "length": 541, "header": "tr|Q9CAY6-1|Q9CAY6_ARATH Isoform 1 of Pentatricopeptide repeat (PPR) superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9CAY6-1" }, "isoforms": [ { "isoform_ac": "Q9CAY6-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAY6/entry", "sequence": { "sequence": "MSMRHNLQRHAKRILAYSNRPRFFCSYTNVTLSSPATNQTLQSRIEAASHQKAEITTVLEQWLQQQQQQGKQLNPSLLRGIVEKLRSSNRPRQALEVSDWMVEQKMYNLPEDFSARFHLTEKVLNLEEAEKFFESIPENMRFESMYNSLLRSYARQSGEKALKKAESVFKKMKKLGLLLRPSPYNSMTSLYSSLGNRDKVDEILREMKENNVELDNVTVNNALRVYAAVSDVATMDKFLADRKEITRLDGLTMLAMAKAYELMSLYGEAGEIEDVHRVWDKYKATRQKDNEEFRTLIGSLLKLGDTKGAEKIYYNEWECSGLEFDNRIPDMLVSGYREKGMVMKADKLVNKTLWIRGLATPITLLLEEMDKKGNKVSPPGLRDLIKNLRDSNQLSKALEASTWMCQKKVFNLFSEDYATRLHLTEKVLGLEEAENFFESSIPENMKDYSVYDTLLSCYARSSNTQSKAEAVFEKMRELGLQSKLSPFNSLISLYSGQGKLSVVNILLCDMKHKNIEPDIVTRNNVLRANAYILAIDSMEKV", "length": 541, "header": "tr|Q9CAY6-1|Q9CAY6_ARATH Isoform 1 of Pentatricopeptide repeat (PPR) superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9CAY6-1" }, "locus": { "chromosome": "3", "start_pos": 3564079, "end_pos": 3565779, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G11380.1", "url": "https://www.ensemblgenomes.org/id/AT3G11380.1" }, { "database": "Ensembl Peptide", "id": "AT3G11380.1", "url": "https://www.ensemblgenomes.org/id/AT3G11380.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, 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"PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9CAY6", "url": "https://www.uniprot.org/uniprotkb/Q9CAY6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G11380", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G11380", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "Q9CAY6", 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9CAY7-1", "uniprot_ac": "Q9CAY7", "uniprot_id": "Q9CAY7_ARATH", "mass": { "chemical_mass": 68171.0, "monoisotopic_mass": 68171.0 }, "refseq": { "ac": "NP_187744", "name": "Cysteine/Histidine-rich C1 domain family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187744" }, "gene_names": [ { "name": "F11B9.29", "type": "synonym", "evidence": [ { "id": "NP_187744", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187744" }, { "id": "Q9CAY7", 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"https://www.ncbi.nlm.nih.gov/gene/820309", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G11370", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G11370", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CCVTVHL", "url": "https://omabrowser.org/oma/group/CCVTVHL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9CAY7", "url": "https://www.orthodb.org/?gene=Q9CAY7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF168", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF168", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_187744", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187744", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G11370", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G11370", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9CAY7", "url": "https://www.uniprot.org/uniprotkb/Q9CAY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9CAY7-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAY7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGGNPRCPLSHPTNPHTLSKSGQITKFGCFTCGKKAPLSKRDRRFSYYCITCDVSFHKGCHIFPRKLTHPYHLQHPLTFTFPDYESGITSDSFDYETYRTAVKCHSQFIITYSLKKPGSIECSWCGKNIEDDCFYRCSICNFYLDLSCSQSIPLLLVANPKSHQHPLVFYRRPLLTPCDACGLVNVLDPSYACFQCNYMVHQSCIDLPRVIKITRHRHRLSHIPCVQSPVSPCGVCYQKVENKYGLYSCNRYEDHSYVVHSKCATHENIWDGKELEWEPEEPENIEDILPFKKVGTDMIKYFSHEHNLKLEKYDAVRDAEKLCQACVCPINSRDFYNCIHCDFFLHEVCAGLLRKLDHALHKHTLILDPYPRDSYYLLDCPICSRGSTGFRYICSISNCNSHRIGIDIRCILVPDHFTHESHEHPLFISTSFKAEIRCQGCQKECMQSYLQCTICIFIMCYKCATIPTEVSYKHDKHPLSLCYGEKADDTYWCELCEKEVNPRNWFYTCNICCITIHLHCIFGSSSYMKPGSIFDYNYSKLEVLRNSNSTRPQCTRCGDRCPGYIYFKRKRDKHPVTFSCSVQCLEGG", "length": 589, "header": "tr|Q9CAY7-1|Q9CAY7_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9CAY7-1" }, "isoforms": [ { "isoform_ac": "Q9CAY7-1", "url": "https://www.uniprot.org/uniprotkb/Q9CAY7/entry", "sequence": { "sequence": "MDGGNPRCPLSHPTNPHTLSKSGQITKFGCFTCGKKAPLSKRDRRFSYYCITCDVSFHKGCHIFPRKLTHPYHLQHPLTFTFPDYESGITSDSFDYETYRTAVKCHSQFIITYSLKKPGSIECSWCGKNIEDDCFYRCSICNFYLDLSCSQSIPLLLVANPKSHQHPLVFYRRPLLTPCDACGLVNVLDPSYACFQCNYMVHQSCIDLPRVIKITRHRHRLSHIPCVQSPVSPCGVCYQKVENKYGLYSCNRYEDHSYVVHSKCATHENIWDGKELEWEPEEPENIEDILPFKKVGTDMIKYFSHEHNLKLEKYDAVRDAEKLCQACVCPINSRDFYNCIHCDFFLHEVCAGLLRKLDHALHKHTLILDPYPRDSYYLLDCPICSRGSTGFRYICSISNCNSHRIGIDIRCILVPDHFTHESHEHPLFISTSFKAEIRCQGCQKECMQSYLQCTICIFIMCYKCATIPTEVSYKHDKHPLSLCYGEKADDTYWCELCEKEVNPRNWFYTCNICCITIHLHCIFGSSSYMKPGSIFDYNYSKLEVLRNSNSTRPQCTRCGDRCPGYIYFKRKRDKHPVTFSCSVQCLEGG", "length": 589, "header": "tr|Q9CAY7-1|Q9CAY7_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9CAY7-1" }, "locus": { "chromosome": "3", "start_pos": 3561052, "end_pos": 3563059, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G11370.1", "url": "https://www.ensemblgenomes.org/id/AT3G11370.1" }, { "database": "Ensembl Peptide", "id": "AT3G11370.1", "url": "https://www.ensemblgenomes.org/id/AT3G11370.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 20, "end_pos": 20, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9CAY7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CAY7" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser20" }, { "start_pos": 22, "end_pos": 22, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9CAY7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9CAY7" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser22" }, { "start_pos": 365, "end_pos": 365, "kinase_uniprot_canonical_ac": "", 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"MDRISGLPDELLVKIISFVPTKVAVSTSILSKRWESLWKWVPKLECDCTEPALRDFILKNLPLQARIIESLYLRFRRESFLFQDIKLWGGIAISHCLRELRIDFFSHYANPYVILPRSLYTCKSLVTLKLLGLGIRVDVPRDVCLPSLKTLLLQCVAYSEEDPLRLLLSCCPVLEDLVIELDDANQNVKALVVIVPTLQCLSLKIPASCSDERYLIVTPSLKYFKVEDDREIFNALIENMPELEEADIYVTQHIETLLESVTSVKRLTLRQLYNSIDEYKCRAGIVFKQLEQLELSICSDNWTKLVIWLLQNSPNLRVLNLDADSDYERYEEYEQDNWKNIQRSVPKCLKSSLKTLEFAGYTARPEERDFLSFIFKKARCLKTSSISH", "length": 388, "header": "sp|Q9FF58-1|FBD30_ARATH Isoform 1 of FBD-associated F-box protein At5g60610 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FF58-1" }, "isoforms": [ { "isoform_ac": "Q9FF58-1", "url": "https://www.uniprot.org/uniprotkb/Q9FF58/entry#Q9FF58-1", "sequence": { "sequence": "MDRISGLPDELLVKIISFVPTKVAVSTSILSKRWESLWKWVPKLECDCTEPALRDFILKNLPLQARIIESLYLRFRRESFLFQDIKLWGGIAISHCLRELRIDFFSHYANPYVILPRSLYTCKSLVTLKLLGLGIRVDVPRDVCLPSLKTLLLQCVAYSEEDPLRLLLSCCPVLEDLVIELDDANQNVKALVVIVPTLQCLSLKIPASCSDERYLIVTPSLKYFKVEDDREIFNALIENMPELEEADIYVTQHIETLLESVTSVKRLTLRQLYNSIDEYKCRAGIVFKQLEQLELSICSDNWTKLVIWLLQNSPNLRVLNLDADSDYERYEEYEQDNWKNIQRSVPKCLKSSLKTLEFAGYTARPEERDFLSFIFKKARCLKTSSISH", "length": 388, "header": "sp|Q9FF58-1|FBD30_ARATH Isoform 1 of FBD-associated F-box protein At5g60610 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FF58-1" }, "locus": { "chromosome": "5", "start_pos": 24363591, "end_pos": 24365615, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G60610.1", "url": "https://www.ensemblgenomes.org/id/AT5G60610.1" }, { "database": "Ensembl Peptide", "id": "AT5G60610.1", "url": "https://www.ensemblgenomes.org/id/AT5G60610.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 214, "end_pos": 214, 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phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9FF58", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FF58" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FF58", "url": "https://www.uniprot.org/uniprotkb/Q9FF58" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of 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Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones.", "journal": "DNA Res.", "date": "1997", "authors": "Sato S, Kotani H, Nakamura Y, Kaneko T, Asamizu E, Fukami M, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FF58", "url": "https://www.uniprot.org/uniprotkb/Q9FF58" } ], "reference": [ { "type": "PubMed", "id": "9330910", "url": "https://glygen.org/publication/PubMed/9330910" } ] } ], "pathway": [ { "id": "ath:AT5G60610", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G60610", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FF58", "url": "https://www.uniprot.org/uniprotkb/Q9FF58" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FF58-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 388, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FF58-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FF58" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FF58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF58" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 1, "end_pos": 47, "start_aa": "Met", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 21, 26, 28, 31, 214 ], "sequon_annotation_sites": [ { "start_pos": 301, "end_pos": 303 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FF62-1", "uniprot_ac": "Q9FF62", "uniprot_id": "Q9FF62_ARATH", "mass": { "chemical_mass": 22450.0, "monoisotopic_mass": 22450.0 }, "refseq": { "ac": "NP_196131", "name": "C2H2 and C2HC zinc fingers superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196131" }, "gene_names": [ { "name": "MUG13.2", "type": "recommended", "evidence": [ { "id": "Q9FF62", "database": "UniProtKB", "url": 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"+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G23920.1", "url": "https://www.ensemblgenomes.org/id/AT5G23920.1" }, { "database": "Ensembl Peptide", "id": "AT5G23920.1", "url": "https://www.ensemblgenomes.org/id/AT5G23920.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, 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Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FFE2", "url": "https://www.uniprot.org/uniprotkb/Q9FFE2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FFE2", "url": "https://www.uniprot.org/uniprotkb/Q9FFE2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], 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Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FFG6", "url": "https://www.uniprot.org/uniprotkb/Q9FFG6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FFG6", "url": "https://www.uniprot.org/uniprotkb/Q9FFG6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G05480", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G05480", "resource": 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"categories": [ "Protein" ] } ], "sequence": { "sequence": "MQRQRANDTVTTFRYNTRSSSRHGISNTLRVVESKTSASSPRVRRWRKKVSDDRRSTNSDLLPMDLIKEILKRLPAKTLARFLCVSKLWSSIIRSRDLMKLFLTESSARPGRLFFTFRRKDDCFLFSSEESSVATYLFTIPASGYTNNCSFVHGLICYGTTAYASQLVVYNSSTRRSITLPEIEARSFVLKHLLGYDPIDGVYKVLCMTVPRLVLQKKKKLRNNVTDAGELILAPISLPDPPYYVIYYDPQRQSTRKVVIRGITEHNCKLLRCKKRHPCILYYVFSSQVESLMFM", "length": 295, "header": "sp|Q9FFG9-1|FB282_ARATH Isoform 1 of Putative F-box protein At5g44220 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FFG9-1" }, "isoforms": [ { "isoform_ac": "Q9FFG9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FFG9/entry#Q9FFG9-1", "sequence": { "sequence": "MQRQRANDTVTTFRYNTRSSSRHGISNTLRVVESKTSASSPRVRRWRKKVSDDRRSTNSDLLPMDLIKEILKRLPAKTLARFLCVSKLWSSIIRSRDLMKLFLTESSARPGRLFFTFRRKDDCFLFSSEESSVATYLFTIPASGYTNNCSFVHGLICYGTTAYASQLVVYNSSTRRSITLPEIEARSFVLKHLLGYDPIDGVYKVLCMTVPRLVLQKKKKLRNNVTDAGELILAPISLPDPPYYVIYYDPQRQSTRKVVIRGITEHNCKLLRCKKRHPCILYYVFSSQVESLMFM", "length": 295, "header": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF10294", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199230", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199230", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G44170", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G44170", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FFH2", "url": "https://www.uniprot.org/uniprotkb/Q9FFH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FFH2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FFH2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKFTDSPVIDLTVNGTKLSIQQDNGSMHVGTSVWPCSLILSKFAERWSTLDSSSSTTSPNPYAELFDFRRRRGIELGTGCGVAGMAFYLLGLTEIVLTDIAPVMPALKHNLKRNKTALGKSLKTSIVYWNNRDQISALKPPFDLVIAADVVYIEESVGQLVTAMELLVADDGAVLLGYQIRSPEADKLFWELCDIVFKIEKVPHEHLHSDYAYEETDVYIFRKKVKKNEAESVS", "length": 234, "header": 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"Ensembl Peptide", "id": "AT5G44170.1", "url": "https://www.ensemblgenomes.org/id/AT5G44170.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FFH2", "url": "https://www.uniprot.org/uniprotkb/Q9FFH2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FFH2", "url": "https://www.uniprot.org/uniprotkb/Q9FFH2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G44170", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G44170", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1UXV9-1", "protein_name": "Protein N-lysine methyltransferase METTL21A", "gene_name": "METTL21A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": 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D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FFL4", "url": "https://www.uniprot.org/uniprotkb/Q9FFL4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FFR7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FFR7", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G41630", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G41630", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FFR7", "url": "https://www.uniprot.org/uniprotkb/Q9FFR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FFR7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FFR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKMKDFGGGRDIISDLPDALIGHILSFLPTIEAVATTVLAKRWKPLLSFVHSLDFDDSLCLHPAKTNEEKRTNATSFMRFVDGVLALQGNARINKFRLNGKHIINERWVLDWIQNVLKRDVSDIRLYVSSCSDGFDSSFYHLPPEIFVSQTLVTLIIMFEGDINISVGREVSLPKLKTLHLYHFKIKLSTFNKLISGCHALEELMMINWKWDESSEPEPCFVTIYLPNLKILEYCRFERYDEANDKVSLLFHNPKVVYLEFFDSIADRYQQVSFGSLVEARLGIRLTYDQVYNHLETEYYVSSKEKSNVTNLLTGICNVKILYLSDETLEVFGCCRDTIPVFSNLIELTIQTKPHIIWKPLPAMLNNCPNLITLIFEGMHHIYSDRCEDEDGCLCRYPTNFVGGVVARPCLSSSPVKVLKILNFGEICDVHEDDEDDDDDDDDEDEEFVYCLRE", "length": 455, "header": "sp|Q9FFR7-1|FBL87_ARATH Isoform 1 of Putative F-box/LRR-repeat protein At5g41630 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FFR7-1" }, "isoforms": [ { "isoform_ac": "Q9FFR7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FFR7/entry#Q9FFR7-1", "sequence": { "sequence": "MSKMKDFGGGRDIISDLPDALIGHILSFLPTIEAVATTVLAKRWKPLLSFVHSLDFDDSLCLHPAKTNEEKRTNATSFMRFVDGVLALQGNARINKFRLNGKHIINERWVLDWIQNVLKRDVSDIRLYVSSCSDGFDSSFYHLPPEIFVSQTLVTLIIMFEGDINISVGREVSLPKLKTLHLYHFKIKLSTFNKLISGCHALEELMMINWKWDESSEPEPCFVTIYLPNLKILEYCRFERYDEANDKVSLLFHNPKVVYLEFFDSIADRYQQVSFGSLVEARLGIRLTYDQVYNHLETEYYVSSKEKSNVTNLLTGICNVKILYLSDETLEVFGCCRDTIPVFSNLIELTIQTKPHIIWKPLPAMLNNCPNLITLIFEGMHHIYSDRCEDEDGCLCRYPTNFVGGVVARPCLSSSPVKVLKILNFGEICDVHEDDEDDDDDDDDEDEEFVYCLRE", "length": 455, "header": "sp|Q9FFR7-1|FBL87_ARATH Isoform 1 of Putative F-box/LRR-repeat protein At5g41630 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FFR7-1" }, "locus": { "chromosome": "5", "start_pos": 16650282, "end_pos": 16651835, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G41630.1", "url": "https://www.ensemblgenomes.org/id/AT5G41630.1" }, { "database": "Ensembl Peptide", "id": "AT5G41630.1", "url": "https://www.ensemblgenomes.org/id/AT5G41630.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 197, "end_pos": 197, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FFR7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFR7" } ], "site_lbl": "Ser197" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FFR7", "url": "https://www.uniprot.org/uniprotkb/Q9FFR7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones.", "journal": "DNA Res.", "date": "1997", "authors": "Sato S, Kotani H, Nakamura Y, Kaneko T, Asamizu E, Fukami M, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FFR7", "url": "https://www.uniprot.org/uniprotkb/Q9FFR7" } ], "reference": [ { "type": "PubMed", "id": "9330910", "url": "https://glygen.org/publication/PubMed/9330910" } ] } ], "pathway": [ { "id": "ath:AT5G41630", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41630", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FFR7", "url": "https://www.uniprot.org/uniprotkb/Q9FFR7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 309, "end_pos": 311, "annotation": "n_glycosylation_sequon" }, { "start_pos": 74, "end_pos": 76, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FFR7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 455, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FFR7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FFR7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 197 ], "sequon_annotation_sites": [ { "start_pos": 165, "end_pos": 167 }, { "start_pos": 309, "end_pos": 311 }, { "start_pos": 74, "end_pos": 76 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9FFS5-1", "uniprot_ac": "Q9FFS5", "uniprot_id": "Q9FFS5_ARATH", "mass": { "chemical_mass": 122064.0, "monoisotopic_mass": 122064.0 }, "refseq": { "ac": "NP_198970", "name": "Disease resistance protein (TIR-NBS-LRR class) family", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198970" }, "gene_names": [ { "name": "MBK23.7", "type": "recommended", "evidence": [ { "id": "Q9FFS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFS5" } ] }, { "name": "MBK23.7", "type": "synonym", "evidence": [ { "id": "NP_198970", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198970" } ] }, { "name": "MBK23_7", "type": "synonym", "evidence": [ { "id": "NP_198970", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198970" }, { "id": "Q9FFS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFS5" } ] } ], "protein_names": [ { "name": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase", "type": "recommended", "evidence": [ { "id": "Q9FFS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFS5/entry#names_and_taxonomy" } ] }, { "name": "3.2.2.6", "type": "synonym", "evidence": [ { "id": "Q9FFS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFS5/entry#names_and_taxonomy" } ] }, { "name": "Disease resistance protein (TIR-NBS-LRR class) family", "type": "synonym", "evidence": [ { "id": "NP_198970", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198970" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFS5", "url": "https://www.uniprot.org/uniprotkb/Q9FFS5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MBK23.7", "url": "https://www.uniprot.org/uniprotkb/Q9FFS5", "locus": {} } ], "crossref": [ { "id": "AT5G41550", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G41550", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834157", "url": "https://www.ncbi.nlm.nih.gov/gene/834157", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011713", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011713", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G41550", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41550", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "REDQGQM", "url": "https://omabrowser.org/oma/group/REDQGQM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017:SF291", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017:SF291", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07725", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07725", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_198970", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198970", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16301", "url": "https://www.rhea-db.org/rhea/16301", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT5G41550", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G41550", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FFS5", "url": "https://www.uniprot.org/uniprotkb/Q9FFS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FFS5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FFS5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALSSSSSNIRRYHVFPSFHGPDVRKGFLSHLHYHFASKGITTFKDQEIEKGNTIGPELVNAIRESRVSIVLLSKKYASSSWCLDELVEILKCKEDQGQIVMTIFYDVDPSSVRKQKGDFGSTFMKTCEGKSEEVKQRWTKALTHVANIKGEHSLNWANEADMIQKIATDVSTKLSVTPSRDFEGMVGLEAHLTKLNSLLCFEGDDVKMIGIWGPAGIGKSTIARALYNQLSSSFQLKCFMGNLKGSLKSIVGVDHYEFQKSLQKLLLAKILNQGDMRVHNLAAIKEWLQDQRVLIILDDVDDLEQLEVLAKELSWFGSGSRIIVATEDKKILKEHGINDIYHVDFPSMEEALEILCLSAFKQSSVPDGFEELAKKVVHLCGNLPLGLSIVGSSLRGESKHEWELQLPRIEASLDGKIESILKVGYERLSKKNQSLFLHIACFFNYRSVDYVTVMLADSNLDVRNGLKTLADKCFVHISINGWIVMHHHLLQQLGRQIVLEQSDEPGKRQFLIEAEEIRAVLTDETGTGSVIGISYNTSNIGEVSVSKGAFEGMRNLRFLRIFNYLFSGKCTLQIPEDMEYLPPLRLLHWDRYPRKSLPTKFQPERLLELHMPHSNLEKLWGGIQPLPNIKSIDLSFSIRLKEIPNLSNATNLETLNLTHCKTLVELPSSISNLHKLKKLKMSGCEKLRVIPTNINLASLEVVRMNYCSRLRRFPDISSNIKTLSVGNTKIENFPPSVAGSWSRLARLEIGSRSLKILTHAPQSIISLNLSNSDIRRIPDCVISLPYLVELIVENCRKLVTIPALPPWLESLNANKCASLKRVCCSFGNPTILTFYNCLKLDEEARRGIIMQQPVDEYICLPGKEIPAEFSHKAVGNSITIPLAPGTFLASSRYKACFVILPVTGYRCHSISCIVSSKAGFAMRICDLARLSDWSPGTEHLFIFHGRLVYQRNMILSEIIFKFNCVINEFSDDPDLDNMIIECGVQIMTEEAKGSSSSDVDNFETKSSSSELENFETESSSSELDIFETESSSSEADYYEDEGLKFSQVESTKTSKHTSCWSWFTKHGLRKKKMNKTRANSRGIS", 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